sequenzo 0.1.18__cp311-cp311-win_amd64.whl → 0.1.20__cp311-cp311-win_amd64.whl

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  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +108 -6
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +2 -3
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  12. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd +0 -0
  13. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  14. sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd +0 -0
  15. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  16. sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd +0 -0
  17. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  18. sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd +0 -0
  19. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  20. sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd +0 -0
  21. sequenzo/multidomain/cat.py +0 -53
  22. sequenzo/multidomain/dat.py +11 -3
  23. sequenzo/multidomain/idcd.py +0 -3
  24. sequenzo/multidomain/linked_polyad.py +0 -1
  25. sequenzo/openmp_setup.py +233 -0
  26. sequenzo/visualization/plot_transition_matrix.py +21 -22
  27. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/METADATA +71 -10
  28. sequenzo-0.1.20.dist-info/RECORD +272 -0
  29. sequenzo/dissimilarity_measures/setup.py +0 -35
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  172. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  173. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  174. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  175. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  176. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  177. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  178. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  179. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  180. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  181. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  182. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  183. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  184. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  185. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  186. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  187. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  188. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  189. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  190. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  191. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  192. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  197. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  198. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  199. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  200. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  201. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  202. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  203. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  206. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  207. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  208. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  209. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  210. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  211. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  212. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  213. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  214. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
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  398. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/licenses/LICENSE +0 -0
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@@ -1,553 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #include "common.h"
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-
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- template<typename Index, typename Scalar, int StorageOrder, bool ConjugateLhs, bool ConjugateRhs>
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- struct general_matrix_vector_product_wrapper
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- {
15
- static void run(Index rows, Index cols,const Scalar *lhs, Index lhsStride, const Scalar *rhs, Index rhsIncr, Scalar* res, Index resIncr, Scalar alpha)
16
- {
17
- typedef internal::const_blas_data_mapper<Scalar,Index,StorageOrder> LhsMapper;
18
- typedef internal::const_blas_data_mapper<Scalar,Index,RowMajor> RhsMapper;
19
-
20
- internal::general_matrix_vector_product
21
- <Index,Scalar,LhsMapper,StorageOrder,ConjugateLhs,Scalar,RhsMapper,ConjugateRhs>::run(
22
- rows, cols, LhsMapper(lhs, lhsStride), RhsMapper(rhs, rhsIncr), res, resIncr, alpha);
23
- }
24
- };
25
-
26
- int EIGEN_BLAS_FUNC(gemv)(const char *opa, const int *m, const int *n, const RealScalar *palpha,
27
- const RealScalar *pa, const int *lda, const RealScalar *pb, const int *incb, const RealScalar *pbeta, RealScalar *pc, const int *incc)
28
- {
29
- typedef void (*functype)(int, int, const Scalar *, int, const Scalar *, int , Scalar *, int, Scalar);
30
- static const functype func[4] = {
31
- // array index: NOTR
32
- (general_matrix_vector_product_wrapper<int,Scalar,ColMajor,false,false>::run),
33
- // array index: TR
34
- (general_matrix_vector_product_wrapper<int,Scalar,RowMajor,false,false>::run),
35
- // array index: ADJ
36
- (general_matrix_vector_product_wrapper<int,Scalar,RowMajor,Conj ,false>::run),
37
- 0
38
- };
39
-
40
- const Scalar* a = reinterpret_cast<const Scalar*>(pa);
41
- const Scalar* b = reinterpret_cast<const Scalar*>(pb);
42
- Scalar* c = reinterpret_cast<Scalar*>(pc);
43
- Scalar alpha = *reinterpret_cast<const Scalar*>(palpha);
44
- Scalar beta = *reinterpret_cast<const Scalar*>(pbeta);
45
-
46
- // check arguments
47
- int info = 0;
48
- if(OP(*opa)==INVALID) info = 1;
49
- else if(*m<0) info = 2;
50
- else if(*n<0) info = 3;
51
- else if(*lda<std::max(1,*m)) info = 6;
52
- else if(*incb==0) info = 8;
53
- else if(*incc==0) info = 11;
54
- if(info)
55
- return xerbla_(SCALAR_SUFFIX_UP"GEMV ",&info,6);
56
-
57
- if(*m==0 || *n==0 || (alpha==Scalar(0) && beta==Scalar(1)))
58
- return 0;
59
-
60
- int actual_m = *m;
61
- int actual_n = *n;
62
- int code = OP(*opa);
63
- if(code!=NOTR)
64
- std::swap(actual_m,actual_n);
65
-
66
- const Scalar* actual_b = get_compact_vector(b,actual_n,*incb);
67
- Scalar* actual_c = get_compact_vector(c,actual_m,*incc);
68
-
69
- if(beta!=Scalar(1))
70
- {
71
- if(beta==Scalar(0)) make_vector(actual_c, actual_m).setZero();
72
- else make_vector(actual_c, actual_m) *= beta;
73
- }
74
-
75
- if(code>=4 || func[code]==0)
76
- return 0;
77
-
78
- func[code](actual_m, actual_n, a, *lda, actual_b, 1, actual_c, 1, alpha);
79
-
80
- if(actual_b!=b) delete[] actual_b;
81
- if(actual_c!=c) delete[] copy_back(actual_c,c,actual_m,*incc);
82
-
83
- return 1;
84
- }
85
-
86
- int EIGEN_BLAS_FUNC(trsv)(const char *uplo, const char *opa, const char *diag, const int *n, const RealScalar *pa, const int *lda, RealScalar *pb, const int *incb)
87
- {
88
- typedef void (*functype)(int, const Scalar *, int, Scalar *);
89
- static const functype func[16] = {
90
- // array index: NOTR | (UP << 2) | (NUNIT << 3)
91
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, false,ColMajor>::run),
92
- // array index: TR | (UP << 2) | (NUNIT << 3)
93
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, false,RowMajor>::run),
94
- // array index: ADJ | (UP << 2) | (NUNIT << 3)
95
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, Conj, RowMajor>::run),
96
- 0,
97
- // array index: NOTR | (LO << 2) | (NUNIT << 3)
98
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, false,ColMajor>::run),
99
- // array index: TR | (LO << 2) | (NUNIT << 3)
100
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, false,RowMajor>::run),
101
- // array index: ADJ | (LO << 2) | (NUNIT << 3)
102
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, Conj, RowMajor>::run),
103
- 0,
104
- // array index: NOTR | (UP << 2) | (UNIT << 3)
105
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,false,ColMajor>::run),
106
- // array index: TR | (UP << 2) | (UNIT << 3)
107
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,false,RowMajor>::run),
108
- // array index: ADJ | (UP << 2) | (UNIT << 3)
109
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,Conj, RowMajor>::run),
110
- 0,
111
- // array index: NOTR | (LO << 2) | (UNIT << 3)
112
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,false,ColMajor>::run),
113
- // array index: TR | (LO << 2) | (UNIT << 3)
114
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,false,RowMajor>::run),
115
- // array index: ADJ | (LO << 2) | (UNIT << 3)
116
- (internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,Conj, RowMajor>::run),
117
- 0
118
- };
119
-
120
- const Scalar* a = reinterpret_cast<const Scalar*>(pa);
121
- Scalar* b = reinterpret_cast<Scalar*>(pb);
122
-
123
- int info = 0;
124
- if(UPLO(*uplo)==INVALID) info = 1;
125
- else if(OP(*opa)==INVALID) info = 2;
126
- else if(DIAG(*diag)==INVALID) info = 3;
127
- else if(*n<0) info = 4;
128
- else if(*lda<std::max(1,*n)) info = 6;
129
- else if(*incb==0) info = 8;
130
- if(info)
131
- return xerbla_(SCALAR_SUFFIX_UP"TRSV ",&info,6);
132
-
133
- Scalar* actual_b = get_compact_vector(b,*n,*incb);
134
-
135
- int code = OP(*opa) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
136
- func[code](*n, a, *lda, actual_b);
137
-
138
- if(actual_b!=b) delete[] copy_back(actual_b,b,*n,*incb);
139
-
140
- return 0;
141
- }
142
-
143
-
144
-
145
- int EIGEN_BLAS_FUNC(trmv)(const char *uplo, const char *opa, const char *diag, const int *n, const RealScalar *pa, const int *lda, RealScalar *pb, const int *incb)
146
- {
147
- typedef void (*functype)(int, int, const Scalar *, int, const Scalar *, int, Scalar *, int, const Scalar&);
148
- static const functype func[16] = {
149
- // array index: NOTR | (UP << 2) | (NUNIT << 3)
150
- (internal::triangular_matrix_vector_product<int,Upper|0, Scalar,false,Scalar,false,ColMajor>::run),
151
- // array index: TR | (UP << 2) | (NUNIT << 3)
152
- (internal::triangular_matrix_vector_product<int,Lower|0, Scalar,false,Scalar,false,RowMajor>::run),
153
- // array index: ADJ | (UP << 2) | (NUNIT << 3)
154
- (internal::triangular_matrix_vector_product<int,Lower|0, Scalar,Conj, Scalar,false,RowMajor>::run),
155
- 0,
156
- // array index: NOTR | (LO << 2) | (NUNIT << 3)
157
- (internal::triangular_matrix_vector_product<int,Lower|0, Scalar,false,Scalar,false,ColMajor>::run),
158
- // array index: TR | (LO << 2) | (NUNIT << 3)
159
- (internal::triangular_matrix_vector_product<int,Upper|0, Scalar,false,Scalar,false,RowMajor>::run),
160
- // array index: ADJ | (LO << 2) | (NUNIT << 3)
161
- (internal::triangular_matrix_vector_product<int,Upper|0, Scalar,Conj, Scalar,false,RowMajor>::run),
162
- 0,
163
- // array index: NOTR | (UP << 2) | (UNIT << 3)
164
- (internal::triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,false,Scalar,false,ColMajor>::run),
165
- // array index: TR | (UP << 2) | (UNIT << 3)
166
- (internal::triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,false,Scalar,false,RowMajor>::run),
167
- // array index: ADJ | (UP << 2) | (UNIT << 3)
168
- (internal::triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,Conj, Scalar,false,RowMajor>::run),
169
- 0,
170
- // array index: NOTR | (LO << 2) | (UNIT << 3)
171
- (internal::triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,false,Scalar,false,ColMajor>::run),
172
- // array index: TR | (LO << 2) | (UNIT << 3)
173
- (internal::triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,false,Scalar,false,RowMajor>::run),
174
- // array index: ADJ | (LO << 2) | (UNIT << 3)
175
- (internal::triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,Conj, Scalar,false,RowMajor>::run),
176
- 0
177
- };
178
-
179
- const Scalar* a = reinterpret_cast<const Scalar*>(pa);
180
- Scalar* b = reinterpret_cast<Scalar*>(pb);
181
-
182
- int info = 0;
183
- if(UPLO(*uplo)==INVALID) info = 1;
184
- else if(OP(*opa)==INVALID) info = 2;
185
- else if(DIAG(*diag)==INVALID) info = 3;
186
- else if(*n<0) info = 4;
187
- else if(*lda<std::max(1,*n)) info = 6;
188
- else if(*incb==0) info = 8;
189
- if(info)
190
- return xerbla_(SCALAR_SUFFIX_UP"TRMV ",&info,6);
191
-
192
- if(*n==0)
193
- return 1;
194
-
195
- Scalar* actual_b = get_compact_vector(b,*n,*incb);
196
- Matrix<Scalar,Dynamic,1> res(*n);
197
- res.setZero();
198
-
199
- int code = OP(*opa) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
200
- if(code>=16 || func[code]==0)
201
- return 0;
202
-
203
- func[code](*n, *n, a, *lda, actual_b, 1, res.data(), 1, Scalar(1));
204
-
205
- copy_back(res.data(),b,*n,*incb);
206
- if(actual_b!=b) delete[] actual_b;
207
-
208
- return 1;
209
- }
210
-
211
- /** GBMV performs one of the matrix-vector operations
212
- *
213
- * y := alpha*A*x + beta*y, or y := alpha*A'*x + beta*y,
214
- *
215
- * where alpha and beta are scalars, x and y are vectors and A is an
216
- * m by n band matrix, with kl sub-diagonals and ku super-diagonals.
217
- */
218
- int EIGEN_BLAS_FUNC(gbmv)(char *trans, int *m, int *n, int *kl, int *ku, RealScalar *palpha, RealScalar *pa, int *lda,
219
- RealScalar *px, int *incx, RealScalar *pbeta, RealScalar *py, int *incy)
220
- {
221
- const Scalar* a = reinterpret_cast<const Scalar*>(pa);
222
- const Scalar* x = reinterpret_cast<const Scalar*>(px);
223
- Scalar* y = reinterpret_cast<Scalar*>(py);
224
- Scalar alpha = *reinterpret_cast<const Scalar*>(palpha);
225
- Scalar beta = *reinterpret_cast<const Scalar*>(pbeta);
226
- int coeff_rows = *kl+*ku+1;
227
-
228
- int info = 0;
229
- if(OP(*trans)==INVALID) info = 1;
230
- else if(*m<0) info = 2;
231
- else if(*n<0) info = 3;
232
- else if(*kl<0) info = 4;
233
- else if(*ku<0) info = 5;
234
- else if(*lda<coeff_rows) info = 8;
235
- else if(*incx==0) info = 10;
236
- else if(*incy==0) info = 13;
237
- if(info)
238
- return xerbla_(SCALAR_SUFFIX_UP"GBMV ",&info,6);
239
-
240
- if(*m==0 || *n==0 || (alpha==Scalar(0) && beta==Scalar(1)))
241
- return 0;
242
-
243
- int actual_m = *m;
244
- int actual_n = *n;
245
- if(OP(*trans)!=NOTR)
246
- std::swap(actual_m,actual_n);
247
-
248
- const Scalar* actual_x = get_compact_vector(x,actual_n,*incx);
249
- Scalar* actual_y = get_compact_vector(y,actual_m,*incy);
250
-
251
- if(beta!=Scalar(1))
252
- {
253
- if(beta==Scalar(0)) make_vector(actual_y, actual_m).setZero();
254
- else make_vector(actual_y, actual_m) *= beta;
255
- }
256
-
257
- ConstMatrixType mat_coeffs(a,coeff_rows,*n,*lda);
258
-
259
- int nb = std::min(*n,(*m)+(*ku));
260
- for(int j=0; j<nb; ++j)
261
- {
262
- int start = std::max(0,j - *ku);
263
- int end = std::min((*m)-1,j + *kl);
264
- int len = end - start + 1;
265
- int offset = (*ku) - j + start;
266
- if(OP(*trans)==NOTR)
267
- make_vector(actual_y+start,len) += (alpha*actual_x[j]) * mat_coeffs.col(j).segment(offset,len);
268
- else if(OP(*trans)==TR)
269
- actual_y[j] += alpha * ( mat_coeffs.col(j).segment(offset,len).transpose() * make_vector(actual_x+start,len) ).value();
270
- else
271
- actual_y[j] += alpha * ( mat_coeffs.col(j).segment(offset,len).adjoint() * make_vector(actual_x+start,len) ).value();
272
- }
273
-
274
- if(actual_x!=x) delete[] actual_x;
275
- if(actual_y!=y) delete[] copy_back(actual_y,y,actual_m,*incy);
276
-
277
- return 0;
278
- }
279
-
280
- #if 0
281
- /** TBMV performs one of the matrix-vector operations
282
- *
283
- * x := A*x, or x := A'*x,
284
- *
285
- * where x is an n element vector and A is an n by n unit, or non-unit,
286
- * upper or lower triangular band matrix, with ( k + 1 ) diagonals.
287
- */
288
- int EIGEN_BLAS_FUNC(tbmv)(char *uplo, char *opa, char *diag, int *n, int *k, RealScalar *pa, int *lda, RealScalar *px, int *incx)
289
- {
290
- Scalar* a = reinterpret_cast<Scalar*>(pa);
291
- Scalar* x = reinterpret_cast<Scalar*>(px);
292
- int coeff_rows = *k + 1;
293
-
294
- int info = 0;
295
- if(UPLO(*uplo)==INVALID) info = 1;
296
- else if(OP(*opa)==INVALID) info = 2;
297
- else if(DIAG(*diag)==INVALID) info = 3;
298
- else if(*n<0) info = 4;
299
- else if(*k<0) info = 5;
300
- else if(*lda<coeff_rows) info = 7;
301
- else if(*incx==0) info = 9;
302
- if(info)
303
- return xerbla_(SCALAR_SUFFIX_UP"TBMV ",&info,6);
304
-
305
- if(*n==0)
306
- return 0;
307
-
308
- int actual_n = *n;
309
-
310
- Scalar* actual_x = get_compact_vector(x,actual_n,*incx);
311
-
312
- MatrixType mat_coeffs(a,coeff_rows,*n,*lda);
313
-
314
- int ku = UPLO(*uplo)==UPPER ? *k : 0;
315
- int kl = UPLO(*uplo)==LOWER ? *k : 0;
316
-
317
- for(int j=0; j<*n; ++j)
318
- {
319
- int start = std::max(0,j - ku);
320
- int end = std::min((*m)-1,j + kl);
321
- int len = end - start + 1;
322
- int offset = (ku) - j + start;
323
-
324
- if(OP(*trans)==NOTR)
325
- make_vector(actual_y+start,len) += (alpha*actual_x[j]) * mat_coeffs.col(j).segment(offset,len);
326
- else if(OP(*trans)==TR)
327
- actual_y[j] += alpha * ( mat_coeffs.col(j).segment(offset,len).transpose() * make_vector(actual_x+start,len) ).value();
328
- else
329
- actual_y[j] += alpha * ( mat_coeffs.col(j).segment(offset,len).adjoint() * make_vector(actual_x+start,len) ).value();
330
- }
331
-
332
- if(actual_x!=x) delete[] actual_x;
333
- if(actual_y!=y) delete[] copy_back(actual_y,y,actual_m,*incy);
334
-
335
- return 0;
336
- }
337
- #endif
338
-
339
- /** DTBSV solves one of the systems of equations
340
- *
341
- * A*x = b, or A'*x = b,
342
- *
343
- * where b and x are n element vectors and A is an n by n unit, or
344
- * non-unit, upper or lower triangular band matrix, with ( k + 1 )
345
- * diagonals.
346
- *
347
- * No test for singularity or near-singularity is included in this
348
- * routine. Such tests must be performed before calling this routine.
349
- */
350
- int EIGEN_BLAS_FUNC(tbsv)(char *uplo, char *op, char *diag, int *n, int *k, RealScalar *pa, int *lda, RealScalar *px, int *incx)
351
- {
352
- typedef void (*functype)(int, int, const Scalar *, int, Scalar *);
353
- static const functype func[16] = {
354
- // array index: NOTR | (UP << 2) | (NUNIT << 3)
355
- (internal::band_solve_triangular_selector<int,Upper|0, Scalar,false,Scalar,ColMajor>::run),
356
- // array index: TR | (UP << 2) | (NUNIT << 3)
357
- (internal::band_solve_triangular_selector<int,Lower|0, Scalar,false,Scalar,RowMajor>::run),
358
- // array index: ADJ | (UP << 2) | (NUNIT << 3)
359
- (internal::band_solve_triangular_selector<int,Lower|0, Scalar,Conj, Scalar,RowMajor>::run),
360
- 0,
361
- // array index: NOTR | (LO << 2) | (NUNIT << 3)
362
- (internal::band_solve_triangular_selector<int,Lower|0, Scalar,false,Scalar,ColMajor>::run),
363
- // array index: TR | (LO << 2) | (NUNIT << 3)
364
- (internal::band_solve_triangular_selector<int,Upper|0, Scalar,false,Scalar,RowMajor>::run),
365
- // array index: ADJ | (LO << 2) | (NUNIT << 3)
366
- (internal::band_solve_triangular_selector<int,Upper|0, Scalar,Conj, Scalar,RowMajor>::run),
367
- 0,
368
- // array index: NOTR | (UP << 2) | (UNIT << 3)
369
- (internal::band_solve_triangular_selector<int,Upper|UnitDiag,Scalar,false,Scalar,ColMajor>::run),
370
- // array index: TR | (UP << 2) | (UNIT << 3)
371
- (internal::band_solve_triangular_selector<int,Lower|UnitDiag,Scalar,false,Scalar,RowMajor>::run),
372
- // array index: ADJ | (UP << 2) | (UNIT << 3)
373
- (internal::band_solve_triangular_selector<int,Lower|UnitDiag,Scalar,Conj, Scalar,RowMajor>::run),
374
- 0,
375
- // array index: NOTR | (LO << 2) | (UNIT << 3)
376
- (internal::band_solve_triangular_selector<int,Lower|UnitDiag,Scalar,false,Scalar,ColMajor>::run),
377
- // array index: TR | (LO << 2) | (UNIT << 3)
378
- (internal::band_solve_triangular_selector<int,Upper|UnitDiag,Scalar,false,Scalar,RowMajor>::run),
379
- // array index: ADJ | (LO << 2) | (UNIT << 3)
380
- (internal::band_solve_triangular_selector<int,Upper|UnitDiag,Scalar,Conj, Scalar,RowMajor>::run),
381
- 0,
382
- };
383
-
384
- Scalar* a = reinterpret_cast<Scalar*>(pa);
385
- Scalar* x = reinterpret_cast<Scalar*>(px);
386
- int coeff_rows = *k+1;
387
-
388
- int info = 0;
389
- if(UPLO(*uplo)==INVALID) info = 1;
390
- else if(OP(*op)==INVALID) info = 2;
391
- else if(DIAG(*diag)==INVALID) info = 3;
392
- else if(*n<0) info = 4;
393
- else if(*k<0) info = 5;
394
- else if(*lda<coeff_rows) info = 7;
395
- else if(*incx==0) info = 9;
396
- if(info)
397
- return xerbla_(SCALAR_SUFFIX_UP"TBSV ",&info,6);
398
-
399
- if(*n==0 || (*k==0 && DIAG(*diag)==UNIT))
400
- return 0;
401
-
402
- int actual_n = *n;
403
-
404
- Scalar* actual_x = get_compact_vector(x,actual_n,*incx);
405
-
406
- int code = OP(*op) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
407
- if(code>=16 || func[code]==0)
408
- return 0;
409
-
410
- func[code](*n, *k, a, *lda, actual_x);
411
-
412
- if(actual_x!=x) delete[] copy_back(actual_x,x,actual_n,*incx);
413
-
414
- return 0;
415
- }
416
-
417
- /** DTPMV performs one of the matrix-vector operations
418
- *
419
- * x := A*x, or x := A'*x,
420
- *
421
- * where x is an n element vector and A is an n by n unit, or non-unit,
422
- * upper or lower triangular matrix, supplied in packed form.
423
- */
424
- int EIGEN_BLAS_FUNC(tpmv)(char *uplo, char *opa, char *diag, int *n, RealScalar *pap, RealScalar *px, int *incx)
425
- {
426
- typedef void (*functype)(int, const Scalar*, const Scalar*, Scalar*, Scalar);
427
- static const functype func[16] = {
428
- // array index: NOTR | (UP << 2) | (NUNIT << 3)
429
- (internal::packed_triangular_matrix_vector_product<int,Upper|0, Scalar,false,Scalar,false,ColMajor>::run),
430
- // array index: TR | (UP << 2) | (NUNIT << 3)
431
- (internal::packed_triangular_matrix_vector_product<int,Lower|0, Scalar,false,Scalar,false,RowMajor>::run),
432
- // array index: ADJ | (UP << 2) | (NUNIT << 3)
433
- (internal::packed_triangular_matrix_vector_product<int,Lower|0, Scalar,Conj, Scalar,false,RowMajor>::run),
434
- 0,
435
- // array index: NOTR | (LO << 2) | (NUNIT << 3)
436
- (internal::packed_triangular_matrix_vector_product<int,Lower|0, Scalar,false,Scalar,false,ColMajor>::run),
437
- // array index: TR | (LO << 2) | (NUNIT << 3)
438
- (internal::packed_triangular_matrix_vector_product<int,Upper|0, Scalar,false,Scalar,false,RowMajor>::run),
439
- // array index: ADJ | (LO << 2) | (NUNIT << 3)
440
- (internal::packed_triangular_matrix_vector_product<int,Upper|0, Scalar,Conj, Scalar,false,RowMajor>::run),
441
- 0,
442
- // array index: NOTR | (UP << 2) | (UNIT << 3)
443
- (internal::packed_triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,false,Scalar,false,ColMajor>::run),
444
- // array index: TR | (UP << 2) | (UNIT << 3)
445
- (internal::packed_triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,false,Scalar,false,RowMajor>::run),
446
- // array index: ADJ | (UP << 2) | (UNIT << 3)
447
- (internal::packed_triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,Conj, Scalar,false,RowMajor>::run),
448
- 0,
449
- // array index: NOTR | (LO << 2) | (UNIT << 3)
450
- (internal::packed_triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,false,Scalar,false,ColMajor>::run),
451
- // array index: TR | (LO << 2) | (UNIT << 3)
452
- (internal::packed_triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,false,Scalar,false,RowMajor>::run),
453
- // array index: ADJ | (LO << 2) | (UNIT << 3)
454
- (internal::packed_triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,Conj, Scalar,false,RowMajor>::run),
455
- 0
456
- };
457
-
458
- Scalar* ap = reinterpret_cast<Scalar*>(pap);
459
- Scalar* x = reinterpret_cast<Scalar*>(px);
460
-
461
- int info = 0;
462
- if(UPLO(*uplo)==INVALID) info = 1;
463
- else if(OP(*opa)==INVALID) info = 2;
464
- else if(DIAG(*diag)==INVALID) info = 3;
465
- else if(*n<0) info = 4;
466
- else if(*incx==0) info = 7;
467
- if(info)
468
- return xerbla_(SCALAR_SUFFIX_UP"TPMV ",&info,6);
469
-
470
- if(*n==0)
471
- return 1;
472
-
473
- Scalar* actual_x = get_compact_vector(x,*n,*incx);
474
- Matrix<Scalar,Dynamic,1> res(*n);
475
- res.setZero();
476
-
477
- int code = OP(*opa) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
478
- if(code>=16 || func[code]==0)
479
- return 0;
480
-
481
- func[code](*n, ap, actual_x, res.data(), Scalar(1));
482
-
483
- copy_back(res.data(),x,*n,*incx);
484
- if(actual_x!=x) delete[] actual_x;
485
-
486
- return 1;
487
- }
488
-
489
- /** DTPSV solves one of the systems of equations
490
- *
491
- * A*x = b, or A'*x = b,
492
- *
493
- * where b and x are n element vectors and A is an n by n unit, or
494
- * non-unit, upper or lower triangular matrix, supplied in packed form.
495
- *
496
- * No test for singularity or near-singularity is included in this
497
- * routine. Such tests must be performed before calling this routine.
498
- */
499
- int EIGEN_BLAS_FUNC(tpsv)(char *uplo, char *opa, char *diag, int *n, RealScalar *pap, RealScalar *px, int *incx)
500
- {
501
- typedef void (*functype)(int, const Scalar*, Scalar*);
502
- static const functype func[16] = {
503
- // array index: NOTR | (UP << 2) | (NUNIT << 3)
504
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, false,ColMajor>::run),
505
- // array index: TR | (UP << 2) | (NUNIT << 3)
506
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, false,RowMajor>::run),
507
- // array index: ADJ | (UP << 2) | (NUNIT << 3)
508
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, Conj, RowMajor>::run),
509
- 0,
510
- // array index: NOTR | (LO << 2) | (NUNIT << 3)
511
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, false,ColMajor>::run),
512
- // array index: TR | (LO << 2) | (NUNIT << 3)
513
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, false,RowMajor>::run),
514
- // array index: ADJ | (LO << 2) | (NUNIT << 3)
515
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, Conj, RowMajor>::run),
516
- 0,
517
- // array index: NOTR | (UP << 2) | (UNIT << 3)
518
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,false,ColMajor>::run),
519
- // array index: TR | (UP << 2) | (UNIT << 3)
520
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,false,RowMajor>::run),
521
- // array index: ADJ | (UP << 2) | (UNIT << 3)
522
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,Conj, RowMajor>::run),
523
- 0,
524
- // array index: NOTR | (LO << 2) | (UNIT << 3)
525
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,false,ColMajor>::run),
526
- // array index: TR | (LO << 2) | (UNIT << 3)
527
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,false,RowMajor>::run),
528
- // array index: ADJ | (LO << 2) | (UNIT << 3)
529
- (internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,Conj, RowMajor>::run),
530
- 0
531
- };
532
-
533
- Scalar* ap = reinterpret_cast<Scalar*>(pap);
534
- Scalar* x = reinterpret_cast<Scalar*>(px);
535
-
536
- int info = 0;
537
- if(UPLO(*uplo)==INVALID) info = 1;
538
- else if(OP(*opa)==INVALID) info = 2;
539
- else if(DIAG(*diag)==INVALID) info = 3;
540
- else if(*n<0) info = 4;
541
- else if(*incx==0) info = 7;
542
- if(info)
543
- return xerbla_(SCALAR_SUFFIX_UP"TPSV ",&info,6);
544
-
545
- Scalar* actual_x = get_compact_vector(x,*n,*incx);
546
-
547
- int code = OP(*opa) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
548
- func[code](*n, ap, actual_x);
549
-
550
- if(actual_x!=x) delete[] copy_back(actual_x,x,*n,*incx);
551
-
552
- return 1;
553
- }