scientific-writer 2.3.1__py3-none-any.whl

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Files changed (315) hide show
  1. scientific_writer/.claude/WRITER.md +822 -0
  2. scientific_writer/.claude/settings.local.json +30 -0
  3. scientific_writer/.claude/skills/citation-management/SKILL.md +1046 -0
  4. scientific_writer/.claude/skills/citation-management/assets/bibtex_template.bib +264 -0
  5. scientific_writer/.claude/skills/citation-management/assets/citation_checklist.md +386 -0
  6. scientific_writer/.claude/skills/citation-management/references/bibtex_formatting.md +908 -0
  7. scientific_writer/.claude/skills/citation-management/references/citation_validation.md +794 -0
  8. scientific_writer/.claude/skills/citation-management/references/google_scholar_search.md +725 -0
  9. scientific_writer/.claude/skills/citation-management/references/metadata_extraction.md +870 -0
  10. scientific_writer/.claude/skills/citation-management/references/pubmed_search.md +839 -0
  11. scientific_writer/.claude/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
  12. scientific_writer/.claude/skills/citation-management/scripts/extract_metadata.py +569 -0
  13. scientific_writer/.claude/skills/citation-management/scripts/format_bibtex.py +349 -0
  14. scientific_writer/.claude/skills/citation-management/scripts/search_google_scholar.py +282 -0
  15. scientific_writer/.claude/skills/citation-management/scripts/search_pubmed.py +398 -0
  16. scientific_writer/.claude/skills/citation-management/scripts/validate_citations.py +497 -0
  17. scientific_writer/.claude/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
  18. scientific_writer/.claude/skills/clinical-reports/README.md +236 -0
  19. scientific_writer/.claude/skills/clinical-reports/SKILL.md +1088 -0
  20. scientific_writer/.claude/skills/clinical-reports/assets/case_report_template.md +352 -0
  21. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
  22. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
  23. scientific_writer/.claude/skills/clinical-reports/assets/consult_note_template.md +305 -0
  24. scientific_writer/.claude/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
  25. scientific_writer/.claude/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
  26. scientific_writer/.claude/skills/clinical-reports/assets/history_physical_template.md +305 -0
  27. scientific_writer/.claude/skills/clinical-reports/assets/lab_report_template.md +309 -0
  28. scientific_writer/.claude/skills/clinical-reports/assets/pathology_report_template.md +249 -0
  29. scientific_writer/.claude/skills/clinical-reports/assets/quality_checklist.md +338 -0
  30. scientific_writer/.claude/skills/clinical-reports/assets/radiology_report_template.md +318 -0
  31. scientific_writer/.claude/skills/clinical-reports/assets/soap_note_template.md +253 -0
  32. scientific_writer/.claude/skills/clinical-reports/references/case_report_guidelines.md +570 -0
  33. scientific_writer/.claude/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
  34. scientific_writer/.claude/skills/clinical-reports/references/data_presentation.md +530 -0
  35. scientific_writer/.claude/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
  36. scientific_writer/.claude/skills/clinical-reports/references/medical_terminology.md +588 -0
  37. scientific_writer/.claude/skills/clinical-reports/references/patient_documentation.md +744 -0
  38. scientific_writer/.claude/skills/clinical-reports/references/peer_review_standards.md +585 -0
  39. scientific_writer/.claude/skills/clinical-reports/references/regulatory_compliance.md +577 -0
  40. scientific_writer/.claude/skills/clinical-reports/scripts/check_deidentification.py +346 -0
  41. scientific_writer/.claude/skills/clinical-reports/scripts/compliance_checker.py +78 -0
  42. scientific_writer/.claude/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
  43. scientific_writer/.claude/skills/clinical-reports/scripts/format_adverse_events.py +103 -0
  44. scientific_writer/.claude/skills/clinical-reports/scripts/generate_report_template.py +163 -0
  45. scientific_writer/.claude/skills/clinical-reports/scripts/terminology_validator.py +133 -0
  46. scientific_writer/.claude/skills/clinical-reports/scripts/validate_case_report.py +334 -0
  47. scientific_writer/.claude/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
  48. scientific_writer/.claude/skills/document-skills/docx/LICENSE.txt +30 -0
  49. scientific_writer/.claude/skills/document-skills/docx/SKILL.md +197 -0
  50. scientific_writer/.claude/skills/document-skills/docx/docx-js.md +350 -0
  51. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  52. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  53. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  54. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  55. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  56. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  57. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  58. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  59. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  60. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  61. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  62. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  63. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  64. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  65. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  66. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  67. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  68. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  69. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  70. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  71. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  72. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  73. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  74. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  75. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  76. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  77. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  78. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  79. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  80. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  81. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  82. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
  83. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  84. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  85. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  86. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  87. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  88. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  89. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  90. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
  91. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
  92. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
  93. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
  94. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
  95. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
  96. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
  97. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
  98. scientific_writer/.claude/skills/document-skills/docx/ooxml.md +610 -0
  99. scientific_writer/.claude/skills/document-skills/docx/scripts/__init__.py +1 -0
  100. scientific_writer/.claude/skills/document-skills/docx/scripts/document.py +1276 -0
  101. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
  102. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
  103. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
  104. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
  105. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/people.xml +3 -0
  106. scientific_writer/.claude/skills/document-skills/docx/scripts/utilities.py +374 -0
  107. scientific_writer/.claude/skills/document-skills/pdf/LICENSE.txt +30 -0
  108. scientific_writer/.claude/skills/document-skills/pdf/SKILL.md +294 -0
  109. scientific_writer/.claude/skills/document-skills/pdf/forms.md +205 -0
  110. scientific_writer/.claude/skills/document-skills/pdf/reference.md +612 -0
  111. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
  112. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
  113. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
  114. scientific_writer/.claude/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
  115. scientific_writer/.claude/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
  116. scientific_writer/.claude/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
  117. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
  118. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
  119. scientific_writer/.claude/skills/document-skills/pptx/LICENSE.txt +30 -0
  120. scientific_writer/.claude/skills/document-skills/pptx/SKILL.md +484 -0
  121. scientific_writer/.claude/skills/document-skills/pptx/html2pptx.md +625 -0
  122. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  123. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  124. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  125. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  126. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  127. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  128. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  129. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  130. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  131. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  132. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  133. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  134. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  135. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  136. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  137. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  138. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  139. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  140. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  141. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  142. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  143. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  144. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  145. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  146. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  147. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  148. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  149. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  150. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  151. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  152. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  153. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
  154. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  155. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  156. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  157. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  158. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  159. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  160. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  161. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/pack.py +159 -0
  162. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/unpack.py +29 -0
  163. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validate.py +69 -0
  164. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +15 -0
  165. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/base.py +951 -0
  166. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +274 -0
  167. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +315 -0
  168. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +279 -0
  169. scientific_writer/.claude/skills/document-skills/pptx/ooxml.md +427 -0
  170. scientific_writer/.claude/skills/document-skills/pptx/scripts/html2pptx.js +979 -0
  171. scientific_writer/.claude/skills/document-skills/pptx/scripts/inventory.py +1020 -0
  172. scientific_writer/.claude/skills/document-skills/pptx/scripts/rearrange.py +231 -0
  173. scientific_writer/.claude/skills/document-skills/pptx/scripts/replace.py +385 -0
  174. scientific_writer/.claude/skills/document-skills/pptx/scripts/thumbnail.py +450 -0
  175. scientific_writer/.claude/skills/document-skills/xlsx/LICENSE.txt +30 -0
  176. scientific_writer/.claude/skills/document-skills/xlsx/SKILL.md +289 -0
  177. scientific_writer/.claude/skills/document-skills/xlsx/recalc.py +178 -0
  178. scientific_writer/.claude/skills/hypothesis-generation/SKILL.md +155 -0
  179. scientific_writer/.claude/skills/hypothesis-generation/assets/hypothesis_output_template.md +302 -0
  180. scientific_writer/.claude/skills/hypothesis-generation/references/experimental_design_patterns.md +327 -0
  181. scientific_writer/.claude/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +196 -0
  182. scientific_writer/.claude/skills/hypothesis-generation/references/literature_search_strategies.md +505 -0
  183. scientific_writer/.claude/skills/latex-posters/README.md +417 -0
  184. scientific_writer/.claude/skills/latex-posters/SKILL.md +919 -0
  185. scientific_writer/.claude/skills/latex-posters/assets/baposter_template.tex +257 -0
  186. scientific_writer/.claude/skills/latex-posters/assets/beamerposter_template.tex +244 -0
  187. scientific_writer/.claude/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
  188. scientific_writer/.claude/skills/latex-posters/assets/tikzposter_template.tex +251 -0
  189. scientific_writer/.claude/skills/latex-posters/references/latex_poster_packages.md +745 -0
  190. scientific_writer/.claude/skills/latex-posters/references/poster_content_guide.md +748 -0
  191. scientific_writer/.claude/skills/latex-posters/references/poster_design_principles.md +806 -0
  192. scientific_writer/.claude/skills/latex-posters/references/poster_layout_design.md +900 -0
  193. scientific_writer/.claude/skills/latex-posters/scripts/review_poster.sh +214 -0
  194. scientific_writer/.claude/skills/literature-review/SKILL.md +546 -0
  195. scientific_writer/.claude/skills/literature-review/assets/review_template.md +412 -0
  196. scientific_writer/.claude/skills/literature-review/references/citation_styles.md +166 -0
  197. scientific_writer/.claude/skills/literature-review/references/database_strategies.md +381 -0
  198. scientific_writer/.claude/skills/literature-review/scripts/generate_pdf.py +176 -0
  199. scientific_writer/.claude/skills/literature-review/scripts/search_databases.py +303 -0
  200. scientific_writer/.claude/skills/literature-review/scripts/verify_citations.py +222 -0
  201. scientific_writer/.claude/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
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  242. scientific_writer/.claude/skills/scholar-evaluation/scripts/calculate_scores.py +378 -0
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  264. scientific_writer/.claude/skills/scientific-writing/SKILL.md +443 -0
  265. scientific_writer/.claude/skills/scientific-writing/references/citation_styles.md +720 -0
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  267. scientific_writer/.claude/skills/scientific-writing/references/imrad_structure.md +658 -0
  268. scientific_writer/.claude/skills/scientific-writing/references/reporting_guidelines.md +748 -0
  269. scientific_writer/.claude/skills/scientific-writing/references/writing_principles.md +824 -0
  270. scientific_writer/.claude/skills/treatment-plans/README.md +488 -0
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  273. scientific_writer/.claude/skills/treatment-plans/assets/chronic_disease_management_plan.tex +665 -0
  274. scientific_writer/.claude/skills/treatment-plans/assets/general_medical_treatment_plan.tex +547 -0
  275. scientific_writer/.claude/skills/treatment-plans/assets/medical_treatment_plan.sty +222 -0
  276. scientific_writer/.claude/skills/treatment-plans/assets/mental_health_treatment_plan.tex +774 -0
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  278. scientific_writer/.claude/skills/treatment-plans/assets/pain_management_plan.tex +799 -0
  279. scientific_writer/.claude/skills/treatment-plans/assets/perioperative_care_plan.tex +753 -0
  280. scientific_writer/.claude/skills/treatment-plans/assets/quality_checklist.md +471 -0
  281. scientific_writer/.claude/skills/treatment-plans/assets/rehabilitation_treatment_plan.tex +756 -0
  282. scientific_writer/.claude/skills/treatment-plans/references/goal_setting_frameworks.md +411 -0
  283. scientific_writer/.claude/skills/treatment-plans/references/intervention_guidelines.md +507 -0
  284. scientific_writer/.claude/skills/treatment-plans/references/regulatory_compliance.md +476 -0
  285. scientific_writer/.claude/skills/treatment-plans/references/specialty_specific_guidelines.md +655 -0
  286. scientific_writer/.claude/skills/treatment-plans/references/treatment_plan_standards.md +485 -0
  287. scientific_writer/.claude/skills/treatment-plans/scripts/check_completeness.py +318 -0
  288. scientific_writer/.claude/skills/treatment-plans/scripts/generate_template.py +244 -0
  289. scientific_writer/.claude/skills/treatment-plans/scripts/timeline_generator.py +369 -0
  290. scientific_writer/.claude/skills/treatment-plans/scripts/validate_treatment_plan.py +367 -0
  291. scientific_writer/.claude/skills/venue-templates/SKILL.md +590 -0
  292. scientific_writer/.claude/skills/venue-templates/assets/grants/nih_specific_aims.tex +235 -0
  293. scientific_writer/.claude/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
  294. scientific_writer/.claude/skills/venue-templates/assets/journals/nature_article.tex +171 -0
  295. scientific_writer/.claude/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
  296. scientific_writer/.claude/skills/venue-templates/assets/journals/plos_one.tex +317 -0
  297. scientific_writer/.claude/skills/venue-templates/assets/posters/beamerposter_academic.tex +311 -0
  298. scientific_writer/.claude/skills/venue-templates/references/conferences_formatting.md +564 -0
  299. scientific_writer/.claude/skills/venue-templates/references/grants_requirements.md +787 -0
  300. scientific_writer/.claude/skills/venue-templates/references/journals_formatting.md +486 -0
  301. scientific_writer/.claude/skills/venue-templates/references/posters_guidelines.md +628 -0
  302. scientific_writer/.claude/skills/venue-templates/scripts/customize_template.py +206 -0
  303. scientific_writer/.claude/skills/venue-templates/scripts/query_template.py +260 -0
  304. scientific_writer/.claude/skills/venue-templates/scripts/validate_format.py +255 -0
  305. scientific_writer/__init__.py +43 -0
  306. scientific_writer/api.py +393 -0
  307. scientific_writer/cli.py +326 -0
  308. scientific_writer/core.py +275 -0
  309. scientific_writer/models.py +76 -0
  310. scientific_writer/utils.py +289 -0
  311. scientific_writer-2.3.1.dist-info/METADATA +272 -0
  312. scientific_writer-2.3.1.dist-info/RECORD +315 -0
  313. scientific_writer-2.3.1.dist-info/WHEEL +4 -0
  314. scientific_writer-2.3.1.dist-info/entry_points.txt +2 -0
  315. scientific_writer-2.3.1.dist-info/licenses/LICENSE +22 -0
@@ -0,0 +1,745 @@
1
+ # LaTeX Poster Packages: Comprehensive Comparison
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+
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+ ## Overview
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+
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+ Three major LaTeX packages dominate research poster creation: beamerposter, tikzposter, and baposter. Each has distinct strengths, syntax, and use cases. This guide provides detailed comparisons and practical examples.
6
+
7
+ ## Package Comparison Matrix
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+
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+ | Feature | beamerposter | tikzposter | baposter |
10
+ |---------|--------------|------------|----------|
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+ | **Learning Curve** | Easy (if familiar with Beamer) | Moderate | Moderate |
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+ | **Flexibility** | Moderate | High | Moderate-High |
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+ | **Default Aesthetics** | Traditional/Academic | Modern/Colorful | Professional/Clean |
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+ | **Theme Support** | Extensive (Beamer themes) | Built-in + Custom | Limited built-in |
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+ | **Customization** | Moderate effort | Easy with TikZ | Structured approach |
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+ | **Layout System** | Frame-based | Block-based | Box-based with grid |
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+ | **Multi-column** | Manual | Automatic | Automatic |
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+ | **Graphics Integration** | Standard includegraphics | TikZ + includegraphics | Standard + advanced |
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+ | **Community Support** | Large (Beamer community) | Growing | Smaller |
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+ | **Best For** | Traditional academic, institutional branding | Creative designs, custom graphics | Structured multi-column layouts |
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+ | **File Size** | Small | Medium-Large (TikZ overhead) | Medium |
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+ | **Compilation Speed** | Fast | Slower (TikZ processing) | Fast-Medium |
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+
24
+ ## 1. beamerposter
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+
26
+ ### Overview
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+
28
+ beamerposter extends the popular Beamer presentation class for poster-sized documents. It inherits all Beamer functionality, themes, and customization options.
29
+
30
+ ### Advantages
31
+
32
+ - **Familiar syntax**: If you know Beamer, you know beamerposter
33
+ - **Extensive themes**: Access to all Beamer themes and color schemes
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+ - **Institutional branding**: Easy to match university templates
35
+ - **Stable and mature**: Well-tested, extensive documentation
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+ - **Block structure**: Clear organizational units
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+ - **Good for traditional posters**: Academic conferences, thesis defenses
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+
39
+ ### Disadvantages
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+
41
+ - **Less flexible layouts**: Column-based system can be restrictive
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+ - **Manual positioning**: Requires careful spacing adjustments
43
+ - **Traditional aesthetics**: Can look dated compared to modern designs
44
+ - **Limited built-in styling**: Requires theme customization for unique looks
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+
46
+ ### Basic Template
47
+
48
+ ```latex
49
+ \documentclass[final,t]{beamer}
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+ \usepackage[size=a0,scale=1.4,orientation=portrait]{beamerposter}
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+ \usetheme{Berlin}
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+ \usecolortheme{beaver}
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+
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+ % Configure fonts
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+ \setbeamerfont{title}{size=\VeryHuge,series=\bfseries}
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+ \setbeamerfont{author}{size=\Large}
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+ \setbeamerfont{block title}{size=\large,series=\bfseries}
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+
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+ \title{Your Research Title}
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+ \author{Author Names}
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+ \institute{Institution}
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+
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+ \begin{document}
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+ \begin{frame}[t]
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+
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+ % Title block
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+ \begin{block}{}
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+ \maketitle
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+ \end{block}
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+
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+ \begin{columns}[t]
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+ \begin{column}{.45\linewidth}
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+
74
+ \begin{block}{Introduction}
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+ Your introduction text here...
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+ \end{block}
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+
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+ \begin{block}{Methods}
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+ Your methods text here...
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+ \end{block}
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+
82
+ \end{column}
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+
84
+ \begin{column}{.45\linewidth}
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+
86
+ \begin{block}{Results}
87
+ Your results text here...
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+ \includegraphics[width=\linewidth]{figure.pdf}
89
+ \end{block}
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+
91
+ \begin{block}{Conclusions}
92
+ Your conclusions here...
93
+ \end{block}
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+
95
+ \end{column}
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+ \end{columns}
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+
98
+ \end{frame}
99
+ \end{document}
100
+ ```
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+
102
+ ### Popular Themes
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+
104
+ ```latex
105
+ % Traditional academic
106
+ \usetheme{Berlin}
107
+ \usecolortheme{beaver}
108
+
109
+ % Modern minimal
110
+ \usetheme{Madrid}
111
+ \usecolortheme{whale}
112
+
113
+ % Blue professional
114
+ \usetheme{Singapore}
115
+ \usecolortheme{dolphin}
116
+
117
+ % Dark theme
118
+ \usetheme{Warsaw}
119
+ \usecolortheme{seahorse}
120
+ ```
121
+
122
+ ### Custom Colors
123
+
124
+ ```latex
125
+ % Define custom colors
126
+ \definecolor{primarycolor}{RGB}{0,51,102} % Dark blue
127
+ \definecolor{secondarycolor}{RGB}{204,0,0} % Red
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+ \definecolor{accentcolor}{RGB}{255,204,0} % Gold
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+
130
+ % Apply to beamer elements
131
+ \setbeamercolor{structure}{fg=primarycolor}
132
+ \setbeamercolor{block title}{bg=primarycolor,fg=white}
133
+ \setbeamercolor{block body}{bg=primarycolor!10,fg=black}
134
+ ```
135
+
136
+ ### Advanced Customization
137
+
138
+ ```latex
139
+ % Remove navigation symbols
140
+ \setbeamertemplate{navigation symbols}{}
141
+
142
+ % Custom title formatting
143
+ \setbeamertemplate{title page}{
144
+ \begin{center}
145
+ {\usebeamerfont{title}\usebeamercolor[fg]{title}\inserttitle}\\[1cm]
146
+ {\usebeamerfont{author}\insertauthor}\\[0.5cm]
147
+ {\usebeamerfont{institute}\insertinstitute}
148
+ \end{center}
149
+ }
150
+
151
+ % Custom block style
152
+ \setbeamertemplate{block begin}{
153
+ \par\vskip\medskipamount
154
+ \begin{beamercolorbox}[colsep*=.75ex,rounded=true]{block title}
155
+ \usebeamerfont*{block title}\insertblocktitle
156
+ \end{beamercolorbox}
157
+ {\parskip0pt\par}
158
+ \usebeamerfont{block body}
159
+ \begin{beamercolorbox}[colsep*=.75ex,vmode,rounded=true]{block body}
160
+ }
161
+ ```
162
+
163
+ ### Three-Column Layout
164
+
165
+ ```latex
166
+ \begin{columns}[t]
167
+ \begin{column}{.3\linewidth}
168
+ % Left column content
169
+ \end{column}
170
+ \begin{column}{.3\linewidth}
171
+ % Middle column content
172
+ \end{column}
173
+ \begin{column}{.3\linewidth}
174
+ % Right column content
175
+ \end{column}
176
+ \end{columns}
177
+ ```
178
+
179
+ ## 2. tikzposter
180
+
181
+ ### Overview
182
+
183
+ tikzposter is built on the powerful TikZ graphics package, offering modern designs with extensive customization through TikZ commands.
184
+
185
+ ### Advantages
186
+
187
+ - **Modern aesthetics**: Contemporary, colorful designs out-of-the-box
188
+ - **Flexible block placement**: Easy positioning anywhere on poster
189
+ - **Beautiful themes**: Multiple professionally designed themes included
190
+ - **TikZ integration**: Seamless graphics and custom drawings
191
+ - **Color customization**: Easy to create custom color palettes
192
+ - **Automatic spacing**: Intelligent block spacing and alignment
193
+
194
+ ### Disadvantages
195
+
196
+ - **Compilation time**: TikZ processing can be slow for large posters
197
+ - **File size**: PDFs can be larger due to TikZ elements
198
+ - **Learning curve**: TikZ syntax can be complex for advanced customization
199
+ - **Less institutional theme support**: Requires more work to match branding
200
+
201
+ ### Basic Template
202
+
203
+ ```latex
204
+ \documentclass[25pt, a0paper, portrait, margin=0mm, innermargin=15mm,
205
+ blockverticalspace=15mm, colspace=15mm, subcolspace=8mm]{tikzposter}
206
+
207
+ \title{Your Research Title}
208
+ \author{Author Names}
209
+ \institute{Institution}
210
+
211
+ % Choose theme and color style
212
+ \usetheme{Rays}
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+ \usecolorstyle{Denmark}
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+
215
+ \begin{document}
216
+
217
+ \maketitle
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+
219
+ % First column
220
+ \begin{columns}
221
+ \column{0.5}
222
+
223
+ \block{Introduction}{
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+ Your introduction text here...
225
+ }
226
+
227
+ \block{Methods}{
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+ Your methods text here...
229
+ }
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+
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+ % Second column
232
+ \column{0.5}
233
+
234
+ \block{Results}{
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+ Your results text here...
236
+ \begin{tikzfigure}
237
+ \includegraphics[width=0.9\linewidth]{figure.pdf}
238
+ \end{tikzfigure}
239
+ }
240
+
241
+ \block{Conclusions}{
242
+ Your conclusions here...
243
+ }
244
+
245
+ \end{columns}
246
+
247
+ \end{document}
248
+ ```
249
+
250
+ ### Available Themes
251
+
252
+ ```latex
253
+ % Modern with radiating background
254
+ \usetheme{Rays}
255
+
256
+ % Clean with decorative wave
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+ \usetheme{Wave}
258
+
259
+ % Minimal with envelope corners
260
+ \usetheme{Envelope}
261
+
262
+ % Traditional academic
263
+ \usetheme{Basic}
264
+
265
+ % Board-style with texture
266
+ \usetheme{Board}
267
+
268
+ % Clean minimal
269
+ \usetheme{Simple}
270
+
271
+ % Professional with lines
272
+ \usetheme{Default}
273
+
274
+ % Autumn color scheme
275
+ \usetheme{Autumn}
276
+
277
+ % Desert color palette
278
+ \usetheme{Desert}
279
+ ```
280
+
281
+ ### Color Styles
282
+
283
+ ```latex
284
+ % Professional blue
285
+ \usecolorstyle{Denmark}
286
+
287
+ % Warm colors
288
+ \usecolorstyle{Australia}
289
+
290
+ % Cool tones
291
+ \usecolorstyle{Sweden}
292
+
293
+ % Earth tones
294
+ \usecolorstyle{Britain}
295
+
296
+ % Default color scheme
297
+ \usecolorstyle{Default}
298
+ ```
299
+
300
+ ### Custom Color Definition
301
+
302
+ ```latex
303
+ \definecolorstyle{CustomStyle}{
304
+ \definecolor{colorOne}{RGB}{0,51,102} % Dark blue
305
+ \definecolor{colorTwo}{RGB}{255,204,0} % Gold
306
+ \definecolor{colorThree}{RGB}{204,0,0} % Red
307
+ }{
308
+ % Background Colors
309
+ \colorlet{backgroundcolor}{white}
310
+ \colorlet{framecolor}{colorOne}
311
+ % Title Colors
312
+ \colorlet{titlefgcolor}{white}
313
+ \colorlet{titlebgcolor}{colorOne}
314
+ % Block Colors
315
+ \colorlet{blocktitlebgcolor}{colorOne}
316
+ \colorlet{blocktitlefgcolor}{white}
317
+ \colorlet{blockbodybgcolor}{white}
318
+ \colorlet{blockbodyfgcolor}{black}
319
+ % Innerblock Colors
320
+ \colorlet{innerblocktitlebgcolor}{colorTwo}
321
+ \colorlet{innerblocktitlefgcolor}{black}
322
+ \colorlet{innerblockbodybgcolor}{colorTwo!10}
323
+ \colorlet{innerblockbodyfgcolor}{black}
324
+ % Note colors
325
+ \colorlet{notefgcolor}{black}
326
+ \colorlet{notebgcolor}{colorThree!20}
327
+ }
328
+
329
+ \usecolorstyle{CustomStyle}
330
+ ```
331
+
332
+ ### Block Placement and Sizing
333
+
334
+ ```latex
335
+ % Full-width block
336
+ \block{Title}{Content}
337
+
338
+ % Specify width
339
+ \block[width=0.8\linewidth]{Title}{Content}
340
+
341
+ % Position manually
342
+ \block[x=10, y=50, width=30]{Title}{Content}
343
+
344
+ % Inner blocks (nested, different styling)
345
+ \block{Outer Title}{
346
+ \innerblock{Inner Title}{
347
+ Highlighted content
348
+ }
349
+ }
350
+
351
+ % Note blocks (for emphasis)
352
+ \note[width=0.4\linewidth]{
353
+ Important note text
354
+ }
355
+ ```
356
+
357
+ ### Advanced Features
358
+
359
+ ```latex
360
+ % QR codes with tikzposter styling
361
+ \block{Scan for More}{
362
+ \begin{center}
363
+ \qrcode[height=5cm]{https://github.com/project}\\
364
+ \vspace{0.5cm}
365
+ Visit our GitHub repository
366
+ \end{center}
367
+ }
368
+
369
+ % Multi-column within block
370
+ \block{Results}{
371
+ \begin{tabular}{cc}
372
+ \includegraphics[width=0.45\linewidth]{fig1.pdf} &
373
+ \includegraphics[width=0.45\linewidth]{fig2.pdf}
374
+ \end{tabular}
375
+ }
376
+
377
+ % Custom TikZ graphics
378
+ \block{Methodology}{
379
+ \begin{tikzpicture}
380
+ \node[draw, rectangle, fill=blue!20] (A) {Step 1};
381
+ \node[draw, rectangle, fill=green!20, right=of A] (B) {Step 2};
382
+ \draw[->, thick] (A) -- (B);
383
+ \end{tikzpicture}
384
+ }
385
+ ```
386
+
387
+ ## 3. baposter
388
+
389
+ ### Overview
390
+
391
+ baposter (Box Area Poster) uses a box-based layout system with automatic positioning and spacing. Excellent for structured, professional multi-column layouts.
392
+
393
+ ### Advantages
394
+
395
+ - **Automatic layout**: Intelligent box positioning and spacing
396
+ - **Professional defaults**: Clean, polished appearance out-of-the-box
397
+ - **Multi-column excellence**: Best-in-class column-based layouts
398
+ - **Header/footer boxes**: Easy institutional branding
399
+ - **Consistent spacing**: Automatic vertical and horizontal alignment
400
+ - **Print-ready**: Excellent CMYK support
401
+
402
+ ### Disadvantages
403
+
404
+ - **Less flexible**: Box-based system can be constraining
405
+ - **Fewer themes**: Limited built-in theme options
406
+ - **Learning curve**: Unique syntax requires time to master
407
+ - **Less active development**: Smaller community compared to others
408
+
409
+ ### Basic Template
410
+
411
+ ```latex
412
+ \documentclass[a0paper,portrait]{baposter}
413
+
414
+ \usepackage{graphicx}
415
+ \usepackage{multicol}
416
+
417
+ \begin{document}
418
+
419
+ \begin{poster}{
420
+ % Options
421
+ grid=false,
422
+ columns=3,
423
+ colspacing=1em,
424
+ bgColorOne=white,
425
+ bgColorTwo=white,
426
+ borderColor=blue!50,
427
+ headerColorOne=blue!80,
428
+ headerColorTwo=blue!70,
429
+ headerFontColor=white,
430
+ boxColorOne=white,
431
+ boxColorTwo=blue!10,
432
+ textborder=roundedleft,
433
+ eyecatcher=true,
434
+ headerborder=open,
435
+ headerheight=0.12\textheight,
436
+ headershape=roundedright,
437
+ headershade=plain,
438
+ headerfont=\Large\sf\bf,
439
+ linewidth=2pt
440
+ }
441
+ % Eye Catcher (Logo)
442
+ {
443
+ \includegraphics[height=6em]{logo.pdf}
444
+ }
445
+ % Title
446
+ {
447
+ Your Research Title
448
+ }
449
+ % Authors
450
+ {
451
+ Author Names\\
452
+ Institution Name
453
+ }
454
+ % University Logo
455
+ {
456
+ \includegraphics[height=6em]{university-logo.pdf}
457
+ }
458
+
459
+ % First column boxes
460
+ \headerbox{Introduction}{name=intro,column=0,row=0}{
461
+ Your introduction text here...
462
+ }
463
+
464
+ \headerbox{Methods}{name=methods,column=0,below=intro}{
465
+ Your methods text here...
466
+ }
467
+
468
+ % Second column boxes
469
+ \headerbox{Results}{name=results,column=1,row=0,span=2}{
470
+ Your results here...
471
+ \includegraphics[width=0.9\linewidth]{results.pdf}
472
+ }
473
+
474
+ \headerbox{Analysis}{name=analysis,column=1,below=results}{
475
+ Analysis details...
476
+ }
477
+
478
+ \headerbox{Validation}{name=validation,column=2,below=results}{
479
+ Validation results...
480
+ }
481
+
482
+ % Bottom spanning box
483
+ \headerbox{Conclusions}{name=conclusions,column=0,span=3,above=bottom}{
484
+ Your conclusions here...
485
+ }
486
+
487
+ \end{poster}
488
+ \end{document}
489
+ ```
490
+
491
+ ### Box Positioning
492
+
493
+ ```latex
494
+ % Position by column and row
495
+ \headerbox{Title}{name=box1, column=0, row=0}{Content}
496
+
497
+ % Position relative to other boxes
498
+ \headerbox{Title}{name=box2, column=0, below=box1}{Content}
499
+
500
+ % Above another box
501
+ \headerbox{Title}{name=box3, column=1, above=bottom}{Content}
502
+
503
+ % Span multiple columns
504
+ \headerbox{Title}{name=box4, column=0, span=2, row=0}{Content}
505
+
506
+ % Between two boxes vertically
507
+ \headerbox{Title}{name=box5, column=0, below=box1, above=box3}{Content}
508
+
509
+ % Aligned with another box
510
+ \headerbox{Title}{name=box6, column=1, aligned=box1}{Content}
511
+ ```
512
+
513
+ ### Styling Options
514
+
515
+ ```latex
516
+ \begin{poster}{
517
+ % Grid and layout
518
+ grid=false, % Show layout grid (debug)
519
+ columns=3, % Number of columns
520
+ colspacing=1em, % Space between columns
521
+
522
+ % Background
523
+ background=plain, % plain, shadetb, shadelr, user
524
+ bgColorOne=white,
525
+ bgColorTwo=lightgray,
526
+
527
+ % Borders
528
+ borderColor=blue!50,
529
+ linewidth=2pt,
530
+
531
+ % Header
532
+ headerColorOne=blue!80,
533
+ headerColorTwo=blue!70,
534
+ headerFontColor=white,
535
+ headerheight=0.12\textheight,
536
+ headershape=roundedright, % rectangle, rounded, roundedright, roundedleft
537
+ headershade=plain, % plain, shadetb, shadelr
538
+ headerborder=open, % open, closed
539
+
540
+ % Boxes
541
+ boxColorOne=white,
542
+ boxColorTwo=blue!10,
543
+ boxshade=plain, % plain, shadetb, shadelr
544
+ textborder=roundedleft, % none, rectangle, rounded, roundedleft, roundedright
545
+
546
+ % Eye catcher
547
+ eyecatcher=true
548
+ }
549
+ ```
550
+
551
+ ### Color Schemes
552
+
553
+ ```latex
554
+ % Professional blue
555
+ \begin{poster}{
556
+ headerColorOne=blue!80,
557
+ headerColorTwo=blue!70,
558
+ boxColorTwo=blue!10,
559
+ borderColor=blue!50
560
+ }
561
+
562
+ % Academic green
563
+ \begin{poster}{
564
+ headerColorOne=green!70!black,
565
+ headerColorTwo=green!60!black,
566
+ boxColorTwo=green!10,
567
+ borderColor=green!50
568
+ }
569
+
570
+ % Corporate gray
571
+ \begin{poster}{
572
+ headerColorOne=gray!60,
573
+ headerColorTwo=gray!50,
574
+ boxColorTwo=gray!10,
575
+ borderColor=gray!40
576
+ }
577
+ ```
578
+
579
+ ## Package Selection Guide
580
+
581
+ ### Choose beamerposter if:
582
+ - ✅ You're already familiar with Beamer
583
+ - ✅ You need to match institutional Beamer themes
584
+ - ✅ You prefer traditional academic aesthetics
585
+ - ✅ You want extensive theme options
586
+ - ✅ You need fast compilation times
587
+ - ✅ You're creating posters for conservative academic conferences
588
+
589
+ ### Choose tikzposter if:
590
+ - ✅ You want modern, colorful designs
591
+ - ✅ You plan to create custom graphics with TikZ
592
+ - ✅ You value aesthetic flexibility
593
+ - ✅ You want built-in professional themes
594
+ - ✅ You don't mind slightly longer compilation
595
+ - ✅ You're presenting at design-conscious or public-facing events
596
+
597
+ ### Choose baposter if:
598
+ - ✅ You need structured multi-column layouts
599
+ - ✅ You want automatic box positioning
600
+ - ✅ You prefer clean, professional defaults
601
+ - ✅ You need precise control over box relationships
602
+ - ✅ You're creating posters with many sections
603
+ - ✅ You value consistent spacing and alignment
604
+
605
+ ## Conversion Between Packages
606
+
607
+ ### From beamerposter to tikzposter
608
+
609
+ ```latex
610
+ % beamerposter
611
+ \begin{block}{Title}
612
+ Content
613
+ \end{block}
614
+
615
+ % tikzposter equivalent
616
+ \block{Title}{
617
+ Content
618
+ }
619
+ ```
620
+
621
+ ### From beamerposter to baposter
622
+
623
+ ```latex
624
+ % beamerposter
625
+ \begin{block}{Introduction}
626
+ Content
627
+ \end{block}
628
+
629
+ % baposter equivalent
630
+ \headerbox{Introduction}{name=intro, column=0, row=0}{
631
+ Content
632
+ }
633
+ ```
634
+
635
+ ### From tikzposter to baposter
636
+
637
+ ```latex
638
+ % tikzposter
639
+ \block{Methods}{
640
+ Content
641
+ }
642
+
643
+ % baposter equivalent
644
+ \headerbox{Methods}{name=methods, column=0, row=0}{
645
+ Content
646
+ }
647
+ ```
648
+
649
+ ## Compilation Tips
650
+
651
+ ### Faster Compilation
652
+
653
+ ```bash
654
+ # Use draft mode for initial edits
655
+ \documentclass[draft]{tikzposter}
656
+
657
+ # Compile with faster engines when possible
658
+ pdflatex -interaction=nonstopmode poster.tex
659
+
660
+ # For tikzposter, use externalization to cache TikZ graphics
661
+ \usetikzlibrary{external}
662
+ \tikzexternalize
663
+ ```
664
+
665
+ ### Memory Issues
666
+
667
+ ```latex
668
+ % Increase TeX memory for large posters
669
+ % Add to poster preamble:
670
+ \pdfminorversion=7
671
+ \pdfobjcompresslevel=2
672
+ ```
673
+
674
+ ### Font Embedding
675
+
676
+ ```bash
677
+ # Ensure fonts are embedded (required for printing)
678
+ pdflatex -dEmbedAllFonts=true poster.tex
679
+
680
+ # Check font embedding
681
+ pdffonts poster.pdf
682
+ ```
683
+
684
+ ## Hybrid Approaches
685
+
686
+ You can combine strengths of different packages:
687
+
688
+ ### beamerposter with TikZ Graphics
689
+
690
+ ```latex
691
+ \documentclass[final]{beamer}
692
+ \usepackage[size=a0]{beamerposter}
693
+ \usepackage{tikz}
694
+
695
+ \begin{block}{Flowchart}
696
+ \begin{tikzpicture}
697
+ % Custom TikZ graphics within beamerposter
698
+ \end{tikzpicture}
699
+ \end{block}
700
+ ```
701
+
702
+ ### tikzposter with Beamer Themes
703
+
704
+ ```latex
705
+ \documentclass{tikzposter}
706
+
707
+ % Import specific Beamer color definitions
708
+ \definecolor{beamerblue}{RGB}{0,51,102}
709
+ \colorlet{blocktitlebgcolor}{beamerblue}
710
+ ```
711
+
712
+ ## Recommended Packages for All Systems
713
+
714
+ ```latex
715
+ % Essential packages for any poster
716
+ \usepackage{graphicx} % Images
717
+ \usepackage{amsmath,amssymb} % Math symbols
718
+ \usepackage{booktabs} % Professional tables
719
+ \usepackage{multicol} % Multiple columns in text
720
+ \usepackage{qrcode} % QR codes
721
+ \usepackage{hyperref} % Hyperlinks
722
+ \usepackage{caption} % Caption customization
723
+ \usepackage{subcaption} % Subfigures
724
+ ```
725
+
726
+ ## Performance Comparison
727
+
728
+ | Package | Compile Time (A0) | PDF Size | Memory Usage |
729
+ |---------|-------------------|----------|--------------|
730
+ | beamerposter | ~5-10 seconds | 2-5 MB | Low |
731
+ | tikzposter | ~15-30 seconds | 5-15 MB | Medium-High |
732
+ | baposter | ~8-15 seconds | 3-8 MB | Medium |
733
+
734
+ *Note: Times for poster with 5 figures, typical conference content*
735
+
736
+ ## Conclusion
737
+
738
+ All three packages are excellent choices for different scenarios:
739
+
740
+ - **beamerposter**: Best for traditional academic settings and Beamer users
741
+ - **tikzposter**: Best for modern, visually striking presentations
742
+ - **baposter**: Best for structured, professional multi-section posters
743
+
744
+ Choose based on your specific needs, aesthetic preferences, and time constraints. When in doubt, start with tikzposter for modern conferences or beamerposter for traditional academic venues.
745
+