scientific-writer 2.3.1__py3-none-any.whl

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Files changed (315) hide show
  1. scientific_writer/.claude/WRITER.md +822 -0
  2. scientific_writer/.claude/settings.local.json +30 -0
  3. scientific_writer/.claude/skills/citation-management/SKILL.md +1046 -0
  4. scientific_writer/.claude/skills/citation-management/assets/bibtex_template.bib +264 -0
  5. scientific_writer/.claude/skills/citation-management/assets/citation_checklist.md +386 -0
  6. scientific_writer/.claude/skills/citation-management/references/bibtex_formatting.md +908 -0
  7. scientific_writer/.claude/skills/citation-management/references/citation_validation.md +794 -0
  8. scientific_writer/.claude/skills/citation-management/references/google_scholar_search.md +725 -0
  9. scientific_writer/.claude/skills/citation-management/references/metadata_extraction.md +870 -0
  10. scientific_writer/.claude/skills/citation-management/references/pubmed_search.md +839 -0
  11. scientific_writer/.claude/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
  12. scientific_writer/.claude/skills/citation-management/scripts/extract_metadata.py +569 -0
  13. scientific_writer/.claude/skills/citation-management/scripts/format_bibtex.py +349 -0
  14. scientific_writer/.claude/skills/citation-management/scripts/search_google_scholar.py +282 -0
  15. scientific_writer/.claude/skills/citation-management/scripts/search_pubmed.py +398 -0
  16. scientific_writer/.claude/skills/citation-management/scripts/validate_citations.py +497 -0
  17. scientific_writer/.claude/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
  18. scientific_writer/.claude/skills/clinical-reports/README.md +236 -0
  19. scientific_writer/.claude/skills/clinical-reports/SKILL.md +1088 -0
  20. scientific_writer/.claude/skills/clinical-reports/assets/case_report_template.md +352 -0
  21. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
  22. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
  23. scientific_writer/.claude/skills/clinical-reports/assets/consult_note_template.md +305 -0
  24. scientific_writer/.claude/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
  25. scientific_writer/.claude/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
  26. scientific_writer/.claude/skills/clinical-reports/assets/history_physical_template.md +305 -0
  27. scientific_writer/.claude/skills/clinical-reports/assets/lab_report_template.md +309 -0
  28. scientific_writer/.claude/skills/clinical-reports/assets/pathology_report_template.md +249 -0
  29. scientific_writer/.claude/skills/clinical-reports/assets/quality_checklist.md +338 -0
  30. scientific_writer/.claude/skills/clinical-reports/assets/radiology_report_template.md +318 -0
  31. scientific_writer/.claude/skills/clinical-reports/assets/soap_note_template.md +253 -0
  32. scientific_writer/.claude/skills/clinical-reports/references/case_report_guidelines.md +570 -0
  33. scientific_writer/.claude/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
  34. scientific_writer/.claude/skills/clinical-reports/references/data_presentation.md +530 -0
  35. scientific_writer/.claude/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
  36. scientific_writer/.claude/skills/clinical-reports/references/medical_terminology.md +588 -0
  37. scientific_writer/.claude/skills/clinical-reports/references/patient_documentation.md +744 -0
  38. scientific_writer/.claude/skills/clinical-reports/references/peer_review_standards.md +585 -0
  39. scientific_writer/.claude/skills/clinical-reports/references/regulatory_compliance.md +577 -0
  40. scientific_writer/.claude/skills/clinical-reports/scripts/check_deidentification.py +346 -0
  41. scientific_writer/.claude/skills/clinical-reports/scripts/compliance_checker.py +78 -0
  42. scientific_writer/.claude/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
  43. scientific_writer/.claude/skills/clinical-reports/scripts/format_adverse_events.py +103 -0
  44. scientific_writer/.claude/skills/clinical-reports/scripts/generate_report_template.py +163 -0
  45. scientific_writer/.claude/skills/clinical-reports/scripts/terminology_validator.py +133 -0
  46. scientific_writer/.claude/skills/clinical-reports/scripts/validate_case_report.py +334 -0
  47. scientific_writer/.claude/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
  48. scientific_writer/.claude/skills/document-skills/docx/LICENSE.txt +30 -0
  49. scientific_writer/.claude/skills/document-skills/docx/SKILL.md +197 -0
  50. scientific_writer/.claude/skills/document-skills/docx/docx-js.md +350 -0
  51. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  52. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  53. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  54. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  55. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  56. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  57. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  58. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  59. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  60. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  61. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  62. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  63. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  64. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  65. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  66. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  67. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  68. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  69. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  70. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  71. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  72. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  73. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  74. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  75. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  76. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  77. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  78. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  79. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  80. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  81. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  82. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
  83. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  84. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  85. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  86. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  87. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  88. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  89. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  90. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
  91. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
  92. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
  93. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
  94. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
  95. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
  96. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
  97. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
  98. scientific_writer/.claude/skills/document-skills/docx/ooxml.md +610 -0
  99. scientific_writer/.claude/skills/document-skills/docx/scripts/__init__.py +1 -0
  100. scientific_writer/.claude/skills/document-skills/docx/scripts/document.py +1276 -0
  101. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
  102. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
  103. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
  104. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
  105. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/people.xml +3 -0
  106. scientific_writer/.claude/skills/document-skills/docx/scripts/utilities.py +374 -0
  107. scientific_writer/.claude/skills/document-skills/pdf/LICENSE.txt +30 -0
  108. scientific_writer/.claude/skills/document-skills/pdf/SKILL.md +294 -0
  109. scientific_writer/.claude/skills/document-skills/pdf/forms.md +205 -0
  110. scientific_writer/.claude/skills/document-skills/pdf/reference.md +612 -0
  111. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
  112. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
  113. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
  114. scientific_writer/.claude/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
  115. scientific_writer/.claude/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
  116. scientific_writer/.claude/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
  117. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
  118. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
  119. scientific_writer/.claude/skills/document-skills/pptx/LICENSE.txt +30 -0
  120. scientific_writer/.claude/skills/document-skills/pptx/SKILL.md +484 -0
  121. scientific_writer/.claude/skills/document-skills/pptx/html2pptx.md +625 -0
  122. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  123. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  124. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  125. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  126. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  127. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  128. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  129. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  130. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  131. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  132. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  133. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  134. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  135. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  136. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  137. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  138. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  139. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  140. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  141. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  142. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  143. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  144. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  145. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  146. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  147. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  148. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  149. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  150. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  151. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  152. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  153. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
  154. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  155. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  156. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  157. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  158. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  159. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  160. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  161. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/pack.py +159 -0
  162. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/unpack.py +29 -0
  163. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validate.py +69 -0
  164. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +15 -0
  165. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/base.py +951 -0
  166. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +274 -0
  167. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +315 -0
  168. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +279 -0
  169. scientific_writer/.claude/skills/document-skills/pptx/ooxml.md +427 -0
  170. scientific_writer/.claude/skills/document-skills/pptx/scripts/html2pptx.js +979 -0
  171. scientific_writer/.claude/skills/document-skills/pptx/scripts/inventory.py +1020 -0
  172. scientific_writer/.claude/skills/document-skills/pptx/scripts/rearrange.py +231 -0
  173. scientific_writer/.claude/skills/document-skills/pptx/scripts/replace.py +385 -0
  174. scientific_writer/.claude/skills/document-skills/pptx/scripts/thumbnail.py +450 -0
  175. scientific_writer/.claude/skills/document-skills/xlsx/LICENSE.txt +30 -0
  176. scientific_writer/.claude/skills/document-skills/xlsx/SKILL.md +289 -0
  177. scientific_writer/.claude/skills/document-skills/xlsx/recalc.py +178 -0
  178. scientific_writer/.claude/skills/hypothesis-generation/SKILL.md +155 -0
  179. scientific_writer/.claude/skills/hypothesis-generation/assets/hypothesis_output_template.md +302 -0
  180. scientific_writer/.claude/skills/hypothesis-generation/references/experimental_design_patterns.md +327 -0
  181. scientific_writer/.claude/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +196 -0
  182. scientific_writer/.claude/skills/hypothesis-generation/references/literature_search_strategies.md +505 -0
  183. scientific_writer/.claude/skills/latex-posters/README.md +417 -0
  184. scientific_writer/.claude/skills/latex-posters/SKILL.md +919 -0
  185. scientific_writer/.claude/skills/latex-posters/assets/baposter_template.tex +257 -0
  186. scientific_writer/.claude/skills/latex-posters/assets/beamerposter_template.tex +244 -0
  187. scientific_writer/.claude/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
  188. scientific_writer/.claude/skills/latex-posters/assets/tikzposter_template.tex +251 -0
  189. scientific_writer/.claude/skills/latex-posters/references/latex_poster_packages.md +745 -0
  190. scientific_writer/.claude/skills/latex-posters/references/poster_content_guide.md +748 -0
  191. scientific_writer/.claude/skills/latex-posters/references/poster_design_principles.md +806 -0
  192. scientific_writer/.claude/skills/latex-posters/references/poster_layout_design.md +900 -0
  193. scientific_writer/.claude/skills/latex-posters/scripts/review_poster.sh +214 -0
  194. scientific_writer/.claude/skills/literature-review/SKILL.md +546 -0
  195. scientific_writer/.claude/skills/literature-review/assets/review_template.md +412 -0
  196. scientific_writer/.claude/skills/literature-review/references/citation_styles.md +166 -0
  197. scientific_writer/.claude/skills/literature-review/references/database_strategies.md +381 -0
  198. scientific_writer/.claude/skills/literature-review/scripts/generate_pdf.py +176 -0
  199. scientific_writer/.claude/skills/literature-review/scripts/search_databases.py +303 -0
  200. scientific_writer/.claude/skills/literature-review/scripts/verify_citations.py +222 -0
  201. scientific_writer/.claude/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
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@@ -0,0 +1,1536 @@
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+ ---
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+ name: treatment-plans
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+ description: "Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management. Includes SMART goal frameworks, evidence-based interventions with minimal text citations, regulatory compliance (HIPAA), and professional formatting. Prioritizes brevity and clinical actionability."
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+ ---
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+
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+ # Treatment Plan Writing
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+
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+ ## Overview
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+
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+ Treatment plan writing is the systematic documentation of clinical care strategies designed to address patient health conditions through evidence-based interventions, measurable goals, and structured follow-up. This skill provides comprehensive LaTeX templates and validation tools for creating **concise, focused** treatment plans (3-4 pages standard) across all medical specialties with full regulatory compliance.
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+
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+ **Critical Principles:**
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+ 1. **CONCISE & ACTIONABLE**: Treatment plans default to 3-4 pages maximum, focusing only on clinically essential information that impacts care decisions
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+ 2. **Patient-Centered**: Plans must be evidence-based, measurable, and compliant with healthcare regulations (HIPAA, documentation standards)
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+ 3. **Minimal Citations**: Use brief in-text citations only when needed to support clinical recommendations; avoid extensive bibliographies
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+
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+ Every treatment plan should include clear goals, specific interventions, defined timelines, monitoring parameters, and expected outcomes that align with patient preferences and current clinical guidelines - all presented as efficiently as possible.
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+
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+ ## When to Use This Skill
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+
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+ This skill should be used when:
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+ - Creating individualized treatment plans for patient care
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+ - Documenting therapeutic interventions for chronic disease management
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+ - Developing rehabilitation programs (physical therapy, occupational therapy, cardiac rehab)
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+ - Writing mental health and psychiatric treatment plans
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+ - Planning perioperative and surgical care pathways
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+ - Establishing pain management protocols
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+ - Setting patient-centered goals using SMART criteria
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+ - Coordinating multidisciplinary care across specialties
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+ - Ensuring regulatory compliance in treatment documentation
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+ - Generating professional treatment plans for medical records
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+
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+ ## Document Format and Best Practices
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+
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+ ### Document Length Options
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+
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+ Treatment plans come in three format options based on clinical complexity and use case:
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+
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+ #### Option 1: One-Page Treatment Plan (PREFERRED for most cases)
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+
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+ **When to use**: Straightforward clinical scenarios, standard protocols, busy clinical settings
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+
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+ **Format**: Single page containing all essential treatment information in scannable sections
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+ - No table of contents needed
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+ - No extensive narratives
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+ - Focused on actionable items only
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+ - Similar to precision oncology reports or treatment recommendation cards
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+
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+ **Required sections** (all on one page):
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+ 1. **Header Box**: Patient info, diagnosis, date, molecular/risk profile if applicable
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+ 2. **Treatment Regimen**: Numbered list of specific interventions
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+ 3. **Supportive Care**: Brief bullet points
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+ 4. **Rationale**: 1-2 sentence justification (optional for standard protocols)
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+ 5. **Monitoring**: Key parameters and frequency
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+ 6. **Evidence Level**: Guideline reference or evidence grade (e.g., "Level 1, FDA approved")
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+ 7. **Expected Outcome**: Timeline and success metrics
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+
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+ **Design principles**:
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+ - Use small boxes/tables for organization (like the clinical treatment recommendation card format)
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+ - Eliminate all non-essential text
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+ - Use abbreviations familiar to clinicians
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+ - Dense information layout - maximize information per square inch
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+ - Think "quick reference card" not "comprehensive documentation"
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+
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+ **Example structure**:
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+ ```latex
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+ [Patient ID/Diagnosis Box at top]
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+
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+ TARGET PATIENT POPULATION
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+ Number of patients, demographics, key features
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+
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+ PRIMARY TREATMENT REGIMEN
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+ • Medication 1: dose, frequency, duration
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+ • Procedure: specific details
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+ • Monitoring: what and when
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+
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+ SUPPORTIVE CARE
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+ • Key supportive medications
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+
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+ RATIONALE
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+ Brief clinical justification
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+
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+ MOLECULAR TARGETS / RISK FACTORS
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+ Relevant biomarkers or risk stratification
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+
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+ EVIDENCE LEVEL
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+ Guideline reference, trial data
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+
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+ MONITORING REQUIREMENTS
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+ Key labs/vitals, frequency
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+
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+ EXPECTED CLINICAL BENEFIT
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+ Primary endpoint, timeline
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+ ```
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+
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+ #### Option 2: Standard 3-4 Page Format
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+
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+ **When to use**: Moderate complexity, need for patient education materials, multidisciplinary coordination
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+
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+ Uses the Foundation Medicine first-page summary model with 2-3 additional pages of details.
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+
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+ #### Option 3: Extended 5-6 Page Format
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+
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+ **When to use**: Complex comorbidities, research protocols, extensive safety monitoring required
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+
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+ ### First Page Summary (Foundation Medicine Model)
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+
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+ **CRITICAL REQUIREMENT: All treatment plans MUST have a complete executive summary on the first page ONLY, before any table of contents or detailed sections.**
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+
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+ Following the Foundation Medicine model for precision medicine reporting and clinical summary documents, treatment plans begin with a one-page executive summary that provides immediate access to key actionable information. This entire summary must fit on the first page.
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+
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+ **Required First Page Structure (in order):**
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+
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+ 1. **Title and Subtitle**
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+ - Main title: Treatment plan type (e.g., "Comprehensive Treatment Plan")
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+ - Subtitle: Specific condition or focus (e.g., "Type 2 Diabetes Mellitus - Young Adult Patient")
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+
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+ 2. **Report Information Box** (using `\begin{infobox}` or `\begin{patientinfo}`)
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+ - Report type/document purpose
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+ - Date of plan creation
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+ - Patient demographics (age, sex, de-identified)
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+ - Primary diagnosis with ICD-10 code
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+ - Report author/clinic (if applicable)
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+ - Analysis approach or framework used
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+
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+ 3. **Key Findings or Treatment Highlights** (2-4 colored boxes using appropriate box types)
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+ - **Primary Treatment Goals** (using `\begin{goalbox}`)
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+ - 2-3 SMART goals in bullet format
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+ - **Main Interventions** (using `\begin{keybox}` or `\begin{infobox}`)
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+ - 2-3 key interventions (pharmacological, non-pharmacological, monitoring)
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+ - **Critical Decision Points** (using `\begin{warningbox}` if urgent)
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+ - Important monitoring thresholds or safety considerations
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+ - **Timeline Overview** (using `\begin{infobox}`)
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+ - Brief treatment duration/phases
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+ - Key milestone dates
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+
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+ **Visual Format Requirements:**
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+ - Use `\thispagestyle{empty}` to remove page numbers from first page
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+ - All content must fit on page 1 (before `\newpage`)
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+ - Use colored boxes (tcolorbox package) with different colors for different information types
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+ - Boxes should be visually prominent and easy to scan
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+ - Use concise, bullet-point format
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+ - Table of contents (if included) starts on page 2
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+ - Detailed sections start on page 3
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+
146
+ **Example First Page Structure:**
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+ ```latex
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+ \maketitle
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+ \thispagestyle{empty}
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+
151
+ % Report Information Box
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+ \begin{patientinfo}
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+ Report Type, Date, Patient Info, Diagnosis, etc.
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+ \end{patientinfo}
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+
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+ % Key Finding #1: Treatment Goals
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+ \begin{goalbox}[Primary Treatment Goals]
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+ • Goal 1
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+ • Goal 2
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+ • Goal 3
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+ \end{goalbox}
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+
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+ % Key Finding #2: Main Interventions
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+ \begin{keybox}[Core Interventions]
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+ • Intervention 1
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+ • Intervention 2
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+ • Intervention 3
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+ \end{keybox}
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+
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+ % Key Finding #3: Critical Monitoring (if applicable)
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+ \begin{warningbox}[Critical Decision Points]
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+ • Decision point 1
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+ • Decision point 2
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+ \end{warningbox}
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+
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+ \newpage
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+ \tableofcontents % TOC on page 2
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+ \newpage % Detailed content starts page 3
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+ ```
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+
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+ ### Concise Documentation
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+
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+ **CRITICAL: Treatment plans MUST prioritize brevity and clinical relevance. Default to 3-4 pages maximum unless clinical complexity absolutely demands more detail.**
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+
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+ Treatment plans should prioritize **clarity and actionability** over exhaustive detail:
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+
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+ - **Focused**: Include only clinically essential information that impacts care decisions
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+ - **Actionable**: Emphasize what needs to be done, when, and why
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+ - **Efficient**: Facilitate quick decision-making without sacrificing clinical quality
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+ - **Target length options**:
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+ - **1-page format** (preferred for straightforward cases): Quick-reference card with all essential information
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+ - **3-4 pages standard**: Standard format with first-page summary + supporting details
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+ - **5-6 pages** (rare): Only for highly complex cases with multiple comorbidities or multidisciplinary interventions
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+
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+ **Streamlining Guidelines:**
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+ - **First Page Summary**: Use individual colored boxes to consolidate key information (goals, interventions, decision points) - this alone can often convey the essential treatment plan
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+ - **Eliminate Redundancy**: If information is in the first-page summary, don't repeat it verbatim in detailed sections
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+ - **Patient Education section**: 3-5 key bullet points on critical topics and warning signs only
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+ - **Risk Mitigation section**: Highlight only critical medication safety concerns and emergency actions (not exhaustive lists)
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+ - **Expected Outcomes section**: 2-3 concise statements on anticipated responses and timelines
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+ - **Interventions**: Focus on primary interventions; secondary/supportive measures in brief bullet format
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+ - **Use tables and bullet points** extensively for efficient presentation
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+ - **Avoid narrative prose** where structured lists suffice
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+ - **Combine related sections** when appropriate to reduce page count
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+
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+ ### Quality Over Quantity
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+
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+ The goal is professional, clinically complete documentation that respects clinicians' time while ensuring comprehensive patient care. Every section should add value; remove or condense sections that don't directly inform treatment decisions.
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+
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+ ### Citations and Evidence Support
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+
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+ **Use minimal, targeted citations to support clinical recommendations:**
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+
214
+ - **Text Citations Preferred**: Use brief in-text citations (Author Year) or simple references rather than extensive bibliographies unless specifically requested
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+ - **When to Cite**:
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+ - Clinical practice guideline recommendations (e.g., "per ADA 2024 guidelines")
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+ - Specific medication dosing or protocols (e.g., "ACC/AHA recommendations")
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+ - Novel or controversial interventions requiring evidence support
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+ - Risk stratification tools or validated assessment scales
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+ - **When NOT to Cite**:
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+ - Standard-of-care interventions widely accepted in the field
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+ - Basic medical facts and routine clinical practices
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+ - General patient education content
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+ - **Citation Format**:
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+ - Inline: "Initiate metformin as first-line therapy (ADA Standards of Care 2024)"
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+ - Minimal: "Treatment follows ACC/AHA heart failure guidelines"
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+ - Avoid formal numbered references and extensive bibliography sections unless document is for academic/research purposes
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+ - **Keep it Brief**: A 3-4 page treatment plan should have 0-3 citations maximum, only where essential for clinical credibility or novel recommendations
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+
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+ ## Core Capabilities
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+
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+ ### 1. General Medical Treatment Plans
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+
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+ General medical treatment plans address common chronic conditions and acute medical issues requiring structured therapeutic interventions.
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+
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+ #### Standard Components
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+
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+ **Patient Information (De-identified)**
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+ - Demographics (age, sex, relevant medical background)
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+ - Active medical conditions and comorbidities
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+ - Current medications and allergies
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+ - Relevant social and family history
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+ - Functional status and baseline assessments
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+ - **HIPAA Compliance**: Remove all 18 identifiers per Safe Harbor method
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+
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+ **Diagnosis and Assessment Summary**
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+ - Primary diagnosis with ICD-10 code
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+ - Secondary diagnoses and comorbidities
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+ - Severity classification and staging
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+ - Functional limitations and quality of life impact
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+ - Risk stratification (e.g., cardiovascular risk, fall risk)
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+ - Prognostic indicators
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+
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+ **Treatment Goals (SMART Format)**
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+
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+ Short-term goals (1-3 months):
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+ - **Specific**: Clearly defined outcome (e.g., "Reduce HbA1c to <7%")
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+ - **Measurable**: Quantifiable metrics (e.g., "Decrease systolic BP by 10 mmHg")
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+ - **Achievable**: Realistic given patient capabilities
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+ - **Relevant**: Aligned with patient priorities and values
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+ - **Time-bound**: Specific timeframe (e.g., "within 8 weeks")
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+
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+ Long-term goals (6-12 months):
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+ - Disease control or remission targets
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+ - Functional improvement objectives
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+ - Quality of life enhancement
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+ - Prevention of complications
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+ - Maintenance of independence
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+
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+ **Interventions**
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+
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+ *Pharmacological*:
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+ - Medications with specific dosages, routes, frequencies
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+ - Titration schedules and target doses
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+ - Drug-drug interaction considerations
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+ - Monitoring for adverse effects
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+ - Medication reconciliation
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+
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+ *Non-pharmacological*:
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+ - Lifestyle modifications (diet, exercise, smoking cessation)
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+ - Behavioral interventions
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+ - Patient education and self-management
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+ - Monitoring and self-tracking (glucose, blood pressure, weight)
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+ - Assistive devices or adaptive equipment
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+
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+ *Procedural*:
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+ - Planned procedures or interventions
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+ - Referrals to specialists
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+ - Diagnostic testing schedule
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+ - Preventive care (vaccinations, screenings)
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+
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+ **Timeline and Schedule**
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+ - Treatment phases with specific timeframes
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+ - Appointment frequency (weekly, monthly, quarterly)
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+ - Milestone assessments and goal evaluations
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+ - Medication adjustments schedule
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+ - Expected duration of treatment
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+
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+ **Monitoring Parameters**
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+ - Clinical outcomes to track (vital signs, lab values, symptoms)
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+ - Assessment tools and scales (e.g., PHQ-9, pain scales)
302
+ - Frequency of monitoring
303
+ - Thresholds for intervention or escalation
304
+ - Patient-reported outcomes
305
+
306
+ **Expected Outcomes**
307
+ - Primary outcome measures
308
+ - Success criteria and benchmarks
309
+ - Expected timeline for improvement
310
+ - Criteria for treatment modification
311
+ - Long-term prognosis
312
+
313
+ **Follow-up Plan**
314
+ - Scheduled appointments and reassessments
315
+ - Communication plan (phone calls, secure messaging)
316
+ - Emergency contact procedures
317
+ - Criteria for urgent evaluation
318
+ - Transition or discharge planning
319
+
320
+ **Patient Education**
321
+ - Understanding of condition and treatment rationale
322
+ - Self-management skills training
323
+ - Medication administration and adherence
324
+ - Warning signs and when to seek help
325
+ - Resources and support services
326
+
327
+ **Risk Mitigation**
328
+ - Potential adverse effects and management
329
+ - Drug interactions and contraindications
330
+ - Fall prevention, infection prevention
331
+ - Emergency action plans
332
+ - Safety monitoring
333
+
334
+ #### Common Applications
335
+
336
+ - Diabetes mellitus management
337
+ - Hypertension control
338
+ - Heart failure treatment
339
+ - COPD management
340
+ - Asthma care plans
341
+ - Hyperlipidemia treatment
342
+ - Osteoarthritis management
343
+ - Chronic kidney disease
344
+
345
+ ### 2. Rehabilitation Treatment Plans
346
+
347
+ Rehabilitation plans focus on restoring function, improving mobility, and enhancing quality of life through structured therapeutic programs.
348
+
349
+ #### Core Components
350
+
351
+ **Functional Assessment**
352
+ - Baseline functional status (ADLs, IADLs)
353
+ - Range of motion, strength, balance, endurance
354
+ - Gait analysis and mobility assessment
355
+ - Standardized measures (FIM, Barthel Index, Berg Balance Scale)
356
+ - Environmental assessment (home safety, accessibility)
357
+
358
+ **Rehabilitation Goals**
359
+
360
+ *Impairment-level goals*:
361
+ - Improve shoulder flexion to 140 degrees
362
+ - Increase quadriceps strength by 2/5 MMT grades
363
+ - Enhance balance (Berg Score >45/56)
364
+
365
+ *Activity-level goals*:
366
+ - Independent ambulation 150 feet with assistive device
367
+ - Climb 12 stairs with handrail supervision
368
+ - Transfer bed-to-chair independently
369
+
370
+ *Participation-level goals*:
371
+ - Return to work with modifications
372
+ - Resume recreational activities
373
+ - Independent community mobility
374
+
375
+ **Therapeutic Interventions**
376
+
377
+ *Physical Therapy*:
378
+ - Therapeutic exercises (strengthening, stretching, endurance)
379
+ - Manual therapy techniques
380
+ - Gait training and balance activities
381
+ - Modalities (heat, ice, electrical stimulation, ultrasound)
382
+ - Assistive device training
383
+
384
+ *Occupational Therapy*:
385
+ - ADL training (bathing, dressing, grooming, feeding)
386
+ - Upper extremity strengthening and coordination
387
+ - Adaptive equipment and modifications
388
+ - Energy conservation techniques
389
+ - Cognitive rehabilitation
390
+
391
+ *Speech-Language Pathology*:
392
+ - Swallowing therapy and dysphagia management
393
+ - Communication strategies and augmentative devices
394
+ - Cognitive-linguistic therapy
395
+ - Voice therapy
396
+
397
+ *Other Services*:
398
+ - Recreational therapy
399
+ - Aquatic therapy
400
+ - Cardiac rehabilitation
401
+ - Pulmonary rehabilitation
402
+ - Vestibular rehabilitation
403
+
404
+ **Treatment Schedule**
405
+ - Frequency: 3x/week PT, 2x/week OT (example)
406
+ - Session duration: 45-60 minutes
407
+ - Treatment phase durations (acute, subacute, maintenance)
408
+ - Expected total duration: 8-12 weeks
409
+ - Reassessment intervals
410
+
411
+ **Progress Monitoring**
412
+ - Weekly functional assessments
413
+ - Standardized outcome measures
414
+ - Goal attainment scaling
415
+ - Pain and symptom tracking
416
+ - Patient satisfaction
417
+
418
+ **Home Exercise Program**
419
+ - Specific exercises with repetitions/sets/frequency
420
+ - Precautions and safety instructions
421
+ - Progression criteria
422
+ - Self-monitoring strategies
423
+
424
+ #### Specialty Rehabilitation
425
+
426
+ - Post-stroke rehabilitation
427
+ - Orthopedic rehabilitation (joint replacement, fracture)
428
+ - Cardiac rehabilitation (post-MI, post-surgery)
429
+ - Pulmonary rehabilitation
430
+ - Vestibular rehabilitation
431
+ - Neurological rehabilitation
432
+ - Sports injury rehabilitation
433
+
434
+ ### 3. Mental Health Treatment Plans
435
+
436
+ Mental health treatment plans address psychiatric conditions through integrated psychotherapeutic, pharmacological, and psychosocial interventions.
437
+
438
+ #### Essential Components
439
+
440
+ **Psychiatric Assessment**
441
+ - Primary psychiatric diagnosis (DSM-5 criteria)
442
+ - Symptom severity and functional impairment
443
+ - Co-occurring mental health conditions
444
+ - Substance use assessment
445
+ - Suicide/homicide risk assessment
446
+ - Trauma history and PTSD screening
447
+ - Social determinants of mental health
448
+
449
+ **Treatment Goals**
450
+
451
+ *Symptom reduction*:
452
+ - Decrease depression severity (PHQ-9 score from 18 to <10)
453
+ - Reduce anxiety symptoms (GAD-7 score <5)
454
+ - Improve sleep quality (Pittsburgh Sleep Quality Index)
455
+ - Stabilize mood (reduced mood episodes)
456
+
457
+ *Functional improvement*:
458
+ - Return to work or school
459
+ - Improve social relationships and support
460
+ - Enhance coping skills and emotional regulation
461
+ - Increase engagement in meaningful activities
462
+
463
+ *Recovery-oriented goals*:
464
+ - Build resilience and self-efficacy
465
+ - Develop crisis management skills
466
+ - Establish sustainable wellness routines
467
+ - Achieve personal recovery goals
468
+
469
+ **Therapeutic Interventions**
470
+
471
+ *Psychotherapy*:
472
+ - Evidence-based modality (CBT, DBT, ACT, psychodynamic, IPT)
473
+ - Session frequency (weekly, biweekly)
474
+ - Treatment duration (12-16 weeks, ongoing)
475
+ - Specific techniques and targets
476
+ - Group therapy participation
477
+
478
+ *Psychopharmacology*:
479
+ - Medication class and rationale
480
+ - Starting dose and titration schedule
481
+ - Target symptoms
482
+ - Expected response timeline (2-4 weeks for antidepressants)
483
+ - Side effect monitoring
484
+ - Combination therapy considerations
485
+
486
+ *Psychosocial Interventions*:
487
+ - Case management services
488
+ - Peer support programs
489
+ - Family therapy or psychoeducation
490
+ - Vocational rehabilitation
491
+ - Supported housing or community integration
492
+ - Substance abuse treatment
493
+
494
+ **Safety Planning**
495
+ - Crisis contacts and emergency services
496
+ - Warning signs and triggers
497
+ - Coping strategies and self-soothing techniques
498
+ - Safe environment modifications
499
+ - Means restriction (firearms, medications)
500
+ - Support system activation
501
+
502
+ **Monitoring and Assessment**
503
+ - Symptom rating scales (weekly or biweekly)
504
+ - Medication adherence and side effects
505
+ - Suicidal ideation screening
506
+ - Functional status assessments
507
+ - Treatment engagement and therapeutic alliance
508
+
509
+ **Patient and Family Education**
510
+ - Psychoeducation about diagnosis
511
+ - Treatment rationale and expectations
512
+ - Medication information
513
+ - Relapse prevention strategies
514
+ - Community resources
515
+
516
+ #### Mental Health Conditions
517
+
518
+ - Major depressive disorder
519
+ - Anxiety disorders (GAD, panic, social anxiety)
520
+ - Bipolar disorder
521
+ - Schizophrenia and psychotic disorders
522
+ - PTSD and trauma-related disorders
523
+ - Eating disorders
524
+ - Substance use disorders
525
+ - Personality disorders
526
+
527
+ ### 4. Chronic Disease Management Plans
528
+
529
+ Comprehensive long-term care plans for chronic conditions requiring ongoing monitoring, treatment adjustments, and multidisciplinary coordination.
530
+
531
+ #### Key Features
532
+
533
+ **Disease-Specific Targets**
534
+ - Evidence-based treatment goals per guidelines
535
+ - Stage-appropriate interventions
536
+ - Complication prevention strategies
537
+ - Disease progression monitoring
538
+
539
+ **Self-Management Support**
540
+ - Patient activation and engagement
541
+ - Shared decision-making
542
+ - Action plans for symptom changes
543
+ - Technology-enabled monitoring (apps, remote monitoring)
544
+
545
+ **Care Coordination**
546
+ - Primary care physician oversight
547
+ - Specialist consultations and co-management
548
+ - Care transitions (hospital to home)
549
+ - Medication management across providers
550
+ - Communication protocols
551
+
552
+ **Population Health Integration**
553
+ - Registry tracking and outreach
554
+ - Preventive care and screening schedules
555
+ - Quality measure reporting
556
+ - Care gaps identification
557
+
558
+ #### Applicable Conditions
559
+
560
+ - Type 1 and Type 2 diabetes
561
+ - Cardiovascular disease (CHF, CAD)
562
+ - Chronic respiratory diseases (COPD, asthma)
563
+ - Chronic kidney disease
564
+ - Inflammatory bowel disease
565
+ - Rheumatoid arthritis and autoimmune conditions
566
+ - HIV/AIDS
567
+ - Cancer survivorship care
568
+
569
+ ### 5. Perioperative Care Plans
570
+
571
+ Structured plans for surgical and procedural patients covering preoperative preparation, intraoperative management, and postoperative recovery.
572
+
573
+ #### Components
574
+
575
+ **Preoperative Assessment**
576
+ - Surgical indication and planned procedure
577
+ - Preoperative risk stratification (ASA class, cardiac risk)
578
+ - Optimization of medical conditions
579
+ - Medication management (continuation, discontinuation)
580
+ - Preoperative testing and clearances
581
+ - Informed consent and patient education
582
+
583
+ **Perioperative Interventions**
584
+ - Enhanced recovery after surgery (ERAS) protocols
585
+ - Venous thromboembolism prophylaxis
586
+ - Antibiotic prophylaxis
587
+ - Glycemic control strategies
588
+ - Pain management plan (multimodal analgesia)
589
+
590
+ **Postoperative Care**
591
+ - Immediate recovery goals (24-48 hours)
592
+ - Early mobilization protocols
593
+ - Diet advancement
594
+ - Wound care and drain management
595
+ - Pain control regimen
596
+ - Complication monitoring
597
+
598
+ **Discharge Planning**
599
+ - Activity restrictions and progression
600
+ - Medication reconciliation
601
+ - Follow-up appointments
602
+ - Home health or rehabilitation services
603
+ - Return-to-work timeline
604
+
605
+ ### 6. Pain Management Plans
606
+
607
+ Multimodal approaches to acute and chronic pain using evidence-based interventions and opioid-sparing strategies.
608
+
609
+ #### Comprehensive Components
610
+
611
+ **Pain Assessment**
612
+ - Pain location, quality, intensity (0-10 scale)
613
+ - Temporal pattern (constant, intermittent, breakthrough)
614
+ - Aggravating and alleviating factors
615
+ - Functional impact (sleep, activities, mood)
616
+ - Previous treatments and responses
617
+ - Psychosocial contributors
618
+
619
+ **Multimodal Interventions**
620
+
621
+ *Pharmacological*:
622
+ - Non-opioid analgesics (acetaminophen, NSAIDs)
623
+ - Adjuvant medications (antidepressants, anticonvulsants, muscle relaxants)
624
+ - Topical agents (lidocaine, capsaicin, diclofenac)
625
+ - Opioid therapy (when appropriate, with risk mitigation)
626
+ - Titration and rotation strategies
627
+
628
+ *Interventional Procedures*:
629
+ - Nerve blocks and injections
630
+ - Radiofrequency ablation
631
+ - Spinal cord stimulation
632
+ - Intrathecal drug delivery
633
+
634
+ *Non-pharmacological*:
635
+ - Physical therapy and exercise
636
+ - Cognitive-behavioral therapy for pain
637
+ - Mindfulness and relaxation techniques
638
+ - Acupuncture
639
+ - TENS units
640
+
641
+ **Opioid Safety (when prescribed)**
642
+ - Indication and planned duration
643
+ - Prescription drug monitoring program (PDMP) check
644
+ - Opioid risk assessment tools
645
+ - Naloxone prescription
646
+ - Treatment agreements
647
+ - Random urine drug screening
648
+ - Frequent follow-up and reassessment
649
+
650
+ **Functional Goals**
651
+ - Specific activity improvements
652
+ - Sleep quality enhancement
653
+ - Reduced pain interference
654
+ - Improved quality of life
655
+ - Return to work or meaningful activities
656
+
657
+ ## Best Practices
658
+
659
+ ### Brevity and Focus (HIGHEST PRIORITY)
660
+
661
+ **Treatment plans MUST be concise and focused on actionable clinical information:**
662
+
663
+ - **1-page format is PREFERRED**: For most clinical scenarios, a single-page treatment plan (like precision oncology reports) provides all necessary information
664
+ - **Default to shortest format possible**: Start with 1-page; only expand if clinical complexity genuinely requires it
665
+ - **Every sentence must add value**: If a section doesn't change clinical decision-making, omit it entirely
666
+ - **Think "quick reference card" not "comprehensive textbook"**: Busy clinicians need scannable, dense information
667
+ - **Avoid academic verbosity**: This is clinical documentation, not a literature review or teaching document
668
+ - **Maximum lengths by complexity**:
669
+ - Simple/standard cases: 1 page
670
+ - Moderate complexity: 3-4 pages (first-page summary + details)
671
+ - High complexity (rare): 5-6 pages maximum
672
+
673
+ ### First Page Summary (Most Important)
674
+
675
+ **ALWAYS create a one-page executive summary as the first page:**
676
+ - The first page must contain ONLY: Title, Report Info Box, and Key Findings boxes
677
+ - This provides an at-a-glance overview similar to precision medicine reports
678
+ - Table of contents and detailed sections start on page 2 or later
679
+ - Think of it as a "clinical highlights" page that a busy clinician can scan in 30 seconds
680
+ - Use 2-4 colored boxes for different key findings (goals, interventions, decision points)
681
+ - **A strong first page can often stand alone** - subsequent pages are for details, not repetition
682
+
683
+ ### SMART Goal Setting
684
+
685
+ All treatment goals should meet SMART criteria:
686
+
687
+ - **Specific**: "Improve HbA1c to <7%" not "Better diabetes control"
688
+ - **Measurable**: Use quantifiable metrics, validated scales, objective measures
689
+ - **Achievable**: Consider patient capabilities, resources, social support
690
+ - **Relevant**: Align with patient values, priorities, and life circumstances
691
+ - **Time-bound**: Define clear timeframes for goal achievement and reassessment
692
+
693
+ ### Patient-Centered Care
694
+
695
+ ✓ **Shared Decision-Making**: Involve patients in goal-setting and treatment choices
696
+ ✓ **Cultural Competence**: Respect cultural beliefs, language preferences, health literacy
697
+ ✓ **Patient Preferences**: Honor treatment preferences and personal values
698
+ ✓ **Individualization**: Tailor plans to patient's unique circumstances
699
+ ✓ **Empowerment**: Support patient activation and self-management
700
+
701
+ ### Evidence-Based Practice
702
+
703
+ ✓ **Clinical Guidelines**: Follow current specialty society recommendations
704
+ ✓ **Quality Measures**: Incorporate HEDIS, CMS quality measures
705
+ ✓ **Comparative Effectiveness**: Use treatments with proven efficacy
706
+ ✓ **Avoid Low-Value Care**: Eliminate unnecessary tests and interventions
707
+ ✓ **Stay Current**: Update plans based on emerging evidence
708
+
709
+ ### Documentation Standards
710
+
711
+ ✓ **Completeness**: Include all required elements
712
+ ✓ **Clarity**: Use clear, professional medical language
713
+ ✓ **Accuracy**: Ensure factual correctness and current information
714
+ ✓ **Timeliness**: Document plans promptly
715
+ ✓ **Legibility**: Professional formatting and organization
716
+ ✓ **Signature and Date**: Authenticate all treatment plans
717
+
718
+ ### Regulatory Compliance
719
+
720
+ ✓ **HIPAA Privacy**: De-identify all protected health information
721
+ ✓ **Informed Consent**: Document patient understanding and agreement
722
+ ✓ **Billing Support**: Include documentation to support medical necessity
723
+ ✓ **Quality Reporting**: Enable extraction of quality metrics
724
+ ✓ **Legal Protection**: Maintain defensible clinical documentation
725
+
726
+ ### Multidisciplinary Coordination
727
+
728
+ ✓ **Team Communication**: Share plans across care team
729
+ ✓ **Role Clarity**: Define responsibilities for each team member
730
+ ✓ **Care Transitions**: Ensure continuity across settings
731
+ ✓ **Specialist Integration**: Coordinate with subspecialty care
732
+ ✓ **Patient-Centered Medical Home**: Align with PCMH principles
733
+
734
+ ## LaTeX Template Usage
735
+
736
+ ### Template Selection
737
+
738
+ Choose the appropriate template based on clinical context and desired length:
739
+
740
+ #### Concise Templates (PREFERRED)
741
+
742
+ 1. **one_page_treatment_plan.tex** - **FIRST CHOICE** for most cases
743
+ - All clinical specialties
744
+ - Standard protocols and straightforward cases
745
+ - Quick-reference format similar to precision oncology reports
746
+ - Dense, scannable, clinician-focused
747
+ - Use this unless complexity demands more detail
748
+
749
+ #### Standard Templates (3-4 pages)
750
+
751
+ Use only when one-page format is insufficient due to complexity:
752
+
753
+ 2. **general_medical_treatment_plan.tex** - Primary care, chronic disease, general medicine
754
+ 3. **rehabilitation_treatment_plan.tex** - PT/OT, post-surgery, injury recovery
755
+ 4. **mental_health_treatment_plan.tex** - Psychiatric conditions, behavioral health
756
+ 5. **chronic_disease_management_plan.tex** - Complex chronic diseases, multiple conditions
757
+ 6. **perioperative_care_plan.tex** - Surgical patients, procedural care
758
+ 7. **pain_management_plan.tex** - Acute or chronic pain conditions
759
+
760
+ **Note**: Even when using standard templates, adapt them to be concise (3-4 pages max) by removing non-essential sections.
761
+
762
+ ### Template Structure
763
+
764
+ All LaTeX templates include:
765
+ - Professional formatting with appropriate margins and fonts
766
+ - Structured sections for all required components
767
+ - Tables for medications, interventions, timelines
768
+ - Goal-tracking sections with SMART criteria
769
+ - Space for provider signatures and dates
770
+ - HIPAA-compliant de-identification guidance
771
+ - Comments with detailed instructions
772
+
773
+ ### Generating PDFs
774
+
775
+ ```bash
776
+ # Compile LaTeX template to PDF
777
+ pdflatex general_medical_treatment_plan.tex
778
+
779
+ # For templates with references
780
+ pdflatex treatment_plan.tex
781
+ bibtex treatment_plan
782
+ pdflatex treatment_plan.tex
783
+ pdflatex treatment_plan.tex
784
+ ```
785
+
786
+ ## Validation and Quality Assurance
787
+
788
+ ### Completeness Checking
789
+
790
+ Use validation scripts to ensure all required sections are present:
791
+
792
+ ```bash
793
+ python check_completeness.py my_treatment_plan.tex
794
+ ```
795
+
796
+ The script checks for:
797
+ - Patient information section
798
+ - Diagnosis and assessment
799
+ - SMART goals (short-term and long-term)
800
+ - Interventions (pharmacological, non-pharmacological)
801
+ - Timeline and schedule
802
+ - Monitoring parameters
803
+ - Expected outcomes
804
+ - Follow-up plan
805
+ - Patient education
806
+ - Risk mitigation
807
+
808
+ ### Treatment Plan Validation
809
+
810
+ Comprehensive validation of treatment plan quality:
811
+
812
+ ```bash
813
+ python validate_treatment_plan.py my_treatment_plan.tex
814
+ ```
815
+
816
+ Validation includes:
817
+ - SMART goal criteria assessment
818
+ - Evidence-based intervention verification
819
+ - Timeline feasibility check
820
+ - Monitoring parameter adequacy
821
+ - Safety and risk mitigation review
822
+ - Regulatory compliance check
823
+
824
+ ### Quality Checklist
825
+
826
+ Review treatment plans against the quality checklist (`quality_checklist.md`):
827
+
828
+ **Clinical Quality**
829
+ - [ ] Diagnosis is accurate and properly coded (ICD-10)
830
+ - [ ] Goals are SMART and patient-centered
831
+ - [ ] Interventions are evidence-based and guideline-concordant
832
+ - [ ] Timeline is realistic and clearly defined
833
+ - [ ] Monitoring plan is comprehensive
834
+ - [ ] Safety considerations are addressed
835
+
836
+ **Patient-Centered Care**
837
+ - [ ] Patient preferences and values incorporated
838
+ - [ ] Shared decision-making documented
839
+ - [ ] Health literacy appropriate language
840
+ - [ ] Cultural considerations addressed
841
+ - [ ] Patient education plan included
842
+
843
+ **Regulatory Compliance**
844
+ - [ ] HIPAA-compliant de-identification
845
+ - [ ] Medical necessity documented
846
+ - [ ] Informed consent noted
847
+ - [ ] Provider signature and credentials
848
+ - [ ] Date of plan creation/revision
849
+
850
+ **Coordination and Communication**
851
+ - [ ] Specialist referrals documented
852
+ - [ ] Care team roles defined
853
+ - [ ] Follow-up schedule clear
854
+ - [ ] Emergency contacts provided
855
+ - [ ] Transition planning addressed
856
+
857
+ ## Integration with Other Skills
858
+
859
+ ### Clinical Reports Integration
860
+
861
+ Treatment plans often accompany other clinical documentation:
862
+
863
+ - **SOAP Notes** (`clinical-reports` skill): Document ongoing implementation
864
+ - **H&P** (`clinical-reports` skill): Initial assessment informs treatment plan
865
+ - **Discharge Summaries** (`clinical-reports` skill): Summarize treatment plan execution
866
+ - **Progress Notes**: Track goal achievement and plan modifications
867
+
868
+ ### Scientific Writing Integration
869
+
870
+ Evidence-based treatment planning requires literature support:
871
+
872
+ - **Citation Management** (`citation-management` skill): Reference clinical guidelines
873
+ - **Literature Review** (`literature-review` skill): Understand treatment evidence base
874
+ - **Research Lookup** (`research-lookup` skill): Find current best practices
875
+
876
+ ### Research Integration
877
+
878
+ Treatment plans may be developed for clinical trials or research studies:
879
+
880
+ - **Research Grants** (`research-grants` skill): Treatment protocols for funded studies
881
+ - **Clinical Trial Reports** (`clinical-reports` skill): Intervention documentation
882
+
883
+ ## Common Use Cases
884
+
885
+ ### Example 1: Type 2 Diabetes Management
886
+
887
+ **Scenario**: 58-year-old patient with newly diagnosed Type 2 diabetes, HbA1c 8.5%, BMI 32
888
+
889
+ **Template**: `general_medical_treatment_plan.tex`
890
+
891
+ **Goals**:
892
+ - Short-term: Reduce HbA1c to <7.5% in 3 months
893
+ - Long-term: Achieve HbA1c <7%, lose 15 pounds in 6 months
894
+
895
+ **Interventions**:
896
+ - Pharmacological: Metformin 500mg BID, titrate to 1000mg BID
897
+ - Lifestyle: Mediterranean diet, 150 min/week moderate exercise
898
+ - Education: Diabetes self-management education, glucose monitoring
899
+
900
+ ### Example 2: Post-Stroke Rehabilitation
901
+
902
+ **Scenario**: 70-year-old patient s/p left MCA stroke with right hemiparesis
903
+
904
+ **Template**: `rehabilitation_treatment_plan.tex`
905
+
906
+ **Goals**:
907
+ - Short-term: Improve right arm strength 2/5 to 3/5 in 4 weeks
908
+ - Long-term: Independent ambulation 150 feet with cane in 12 weeks
909
+
910
+ **Interventions**:
911
+ - PT 3x/week: Gait training, balance, strengthening
912
+ - OT 3x/week: ADL training, upper extremity function
913
+ - SLP 2x/week: Dysphagia therapy
914
+
915
+ ### Example 3: Major Depressive Disorder
916
+
917
+ **Scenario**: 35-year-old with moderate depression, PHQ-9 score 16
918
+
919
+ **Template**: `mental_health_treatment_plan.tex`
920
+
921
+ **Goals**:
922
+ - Short-term: Reduce PHQ-9 to <10 in 8 weeks
923
+ - Long-term: Achieve remission (PHQ-9 <5), return to work
924
+
925
+ **Interventions**:
926
+ - Psychotherapy: CBT weekly sessions
927
+ - Medication: Sertraline 50mg daily, titrate to 100mg
928
+ - Lifestyle: Sleep hygiene, exercise 30 min 5x/week
929
+
930
+ ### Example 4: Total Knee Arthroplasty
931
+
932
+ **Scenario**: 68-year-old scheduled for right TKA for osteoarthritis
933
+
934
+ **Template**: `perioperative_care_plan.tex`
935
+
936
+ **Preoperative Goals**:
937
+ - Optimize diabetes control (glucose <180)
938
+ - Discontinue anticoagulation per protocol
939
+ - Complete medical clearance
940
+
941
+ **Postoperative Goals**:
942
+ - Ambulate 50 feet by POD 1
943
+ - 90-degree knee flexion by POD 3
944
+ - Discharge home with PT services by POD 2-3
945
+
946
+ ### Example 5: Chronic Low Back Pain
947
+
948
+ **Scenario**: 45-year-old with chronic non-specific low back pain, pain 7/10
949
+
950
+ **Template**: `pain_management_plan.tex`
951
+
952
+ **Goals**:
953
+ - Short-term: Reduce pain to 4/10 in 6 weeks
954
+ - Long-term: Return to work full-time, pain 2-3/10
955
+
956
+ **Interventions**:
957
+ - Pharmacological: Gabapentin 300mg TID, duloxetine 60mg daily
958
+ - PT: Core strengthening, McKenzie exercises 2x/week x 8 weeks
959
+ - Behavioral: CBT for pain, mindfulness meditation
960
+ - Interventional: Consider lumbar ESI if inadequate response
961
+
962
+ ## Professional Standards and Guidelines
963
+
964
+ Treatment plans should align with:
965
+
966
+ ### General Medicine
967
+ - American Diabetes Association (ADA) Standards of Care
968
+ - ACC/AHA Cardiovascular Guidelines
969
+ - GOLD COPD Guidelines
970
+ - JNC-8 Hypertension Guidelines
971
+ - KDIGO Chronic Kidney Disease Guidelines
972
+
973
+ ### Rehabilitation
974
+ - APTA Clinical Practice Guidelines
975
+ - AOTA Practice Guidelines
976
+ - Cardiac Rehabilitation Guidelines (AHA/AACVPR)
977
+ - Stroke Rehabilitation Guidelines
978
+
979
+ ### Mental Health
980
+ - APA Practice Guidelines
981
+ - VA/DoD Clinical Practice Guidelines
982
+ - NICE Guidelines (National Institute for Health and Care Excellence)
983
+ - Cochrane Reviews for psychiatric interventions
984
+
985
+ ### Pain Management
986
+ - CDC Opioid Prescribing Guidelines
987
+ - AAPM/APS Chronic Pain Guidelines
988
+ - WHO Pain Ladder
989
+ - Multimodal Analgesia Best Practices
990
+
991
+ ## Timeline Generation
992
+
993
+ Use the timeline generator script to create visual treatment timelines:
994
+
995
+ ```bash
996
+ python timeline_generator.py --plan my_treatment_plan.tex --output timeline.pdf
997
+ ```
998
+
999
+ Generates:
1000
+ - Gantt chart of treatment phases
1001
+ - Milestone markers for goal assessments
1002
+ - Medication titration schedules
1003
+ - Follow-up appointment calendar
1004
+ - Intervention intensity over time
1005
+
1006
+ ## Support and Resources
1007
+
1008
+ ### Template Generation
1009
+
1010
+ Interactive template selection:
1011
+
1012
+ ```bash
1013
+ cd .claude/skills/treatment-plans/scripts
1014
+ python generate_template.py
1015
+
1016
+ # Or specify type directly
1017
+ python generate_template.py --type mental_health --output depression_treatment_plan.tex
1018
+ ```
1019
+
1020
+ ### Validation Workflow
1021
+
1022
+ 1. **Create treatment plan** using appropriate LaTeX template
1023
+ 2. **Check completeness**: `python check_completeness.py plan.tex`
1024
+ 3. **Validate quality**: `python validate_treatment_plan.py plan.tex`
1025
+ 4. **Review checklist**: Compare against `quality_checklist.md`
1026
+ 5. **Generate PDF**: `pdflatex plan.tex`
1027
+ 6. **Review with patient**: Ensure understanding and agreement
1028
+ 7. **Implement and document**: Track progress in clinical notes
1029
+
1030
+ ### Additional Resources
1031
+
1032
+ - Clinical practice guidelines from specialty societies
1033
+ - AHRQ Effective Health Care Program
1034
+ - Cochrane Library for intervention evidence
1035
+ - UpToDate and DynaMed for treatment recommendations
1036
+ - CMS Quality Measures and HEDIS specifications
1037
+
1038
+ ## Professional Document Styling
1039
+
1040
+ ### Overview
1041
+
1042
+ Treatment plans can be enhanced with professional medical document styling using the `medical_treatment_plan.sty` LaTeX package. This custom style transforms plain academic documents into visually appealing, color-coded clinical documents that maintain scientific rigor while improving readability and usability.
1043
+
1044
+ ### Medical Treatment Plan Style Package
1045
+
1046
+ The `medical_treatment_plan.sty` package (located in `assets/medical_treatment_plan.sty`) provides:
1047
+
1048
+ **Professional Color Scheme**
1049
+ - **Primary Blue** (RGB: 0, 102, 153): Headers, section titles, primary accents
1050
+ - **Secondary Blue** (RGB: 102, 178, 204): Light backgrounds, subtle accents
1051
+ - **Accent Blue** (RGB: 0, 153, 204): Hyperlinks, key highlights
1052
+ - **Success Green** (RGB: 0, 153, 76): Goals, positive outcomes
1053
+ - **Warning Red** (RGB: 204, 0, 0): Warnings, critical information
1054
+ - **Dark Gray** (RGB: 64, 64, 64): Body text
1055
+ - **Light Gray** (RGB: 245, 245, 245): Background fills
1056
+
1057
+ **Styled Elements**
1058
+ - Custom colored headers and footers with professional rules
1059
+ - Blue section titles with underlines for clear hierarchy
1060
+ - Enhanced table formatting with colored headers and alternating rows
1061
+ - Optimized list spacing with colored bullets and numbering
1062
+ - Professional page layout with appropriate margins
1063
+
1064
+ ### Custom Information Boxes
1065
+
1066
+ The style package includes five specialized box environments for organizing clinical information:
1067
+
1068
+ #### 1. Info Box (Blue Border, Light Gray Background)
1069
+
1070
+ For general information, clinical assessments, and testing schedules:
1071
+
1072
+ ```latex
1073
+ \begin{infobox}[Title]
1074
+ \textbf{Key Information:}
1075
+ \begin{itemize}
1076
+ \item Clinical assessment details
1077
+ \item Testing schedules
1078
+ \item General guidance
1079
+ \end{itemize}
1080
+ \end{infobox}
1081
+ ```
1082
+
1083
+ **Use cases**: Metabolic status, baseline assessments, monitoring schedules, titration protocols
1084
+
1085
+ #### 2. Warning Box (Red Border, Yellow Background)
1086
+
1087
+ For critical decision points, safety protocols, and alerts:
1088
+
1089
+ ```latex
1090
+ \begin{warningbox}[Alert Title]
1091
+ \textbf{Important Safety Information:}
1092
+ \begin{itemize}
1093
+ \item Critical drug interactions
1094
+ \item Safety monitoring requirements
1095
+ \item Red flag symptoms requiring immediate action
1096
+ \end{itemize}
1097
+ \end{warningbox}
1098
+ ```
1099
+
1100
+ **Use cases**: Medication safety, decision points, contraindications, emergency protocols
1101
+
1102
+ #### 3. Goal Box (Green Border, Green-Tinted Background)
1103
+
1104
+ For treatment goals, targets, and success criteria:
1105
+
1106
+ ```latex
1107
+ \begin{goalbox}[Treatment Goals]
1108
+ \textbf{Primary Objectives:}
1109
+ \begin{itemize}
1110
+ \item Reduce HbA1c to <7\% within 3 months
1111
+ \item Achieve 5-7\% weight loss in 12 weeks
1112
+ \item Complete diabetes education program
1113
+ \end{itemize}
1114
+ \end{goalbox}
1115
+ ```
1116
+
1117
+ **Use cases**: SMART goals, target outcomes, success metrics, CGM goals
1118
+
1119
+ #### 4. Key Points Box (Blue Background)
1120
+
1121
+ For executive summaries, key takeaways, and important recommendations:
1122
+
1123
+ ```latex
1124
+ \begin{keybox}[Key Highlights]
1125
+ \textbf{Essential Points:}
1126
+ \begin{itemize}
1127
+ \item Main therapeutic approach
1128
+ \item Critical patient instructions
1129
+ \item Priority interventions
1130
+ \end{itemize}
1131
+ \end{keybox}
1132
+ ```
1133
+
1134
+ **Use cases**: Plan overview, plate method instructions, important dietary guidelines
1135
+
1136
+ #### 5. Emergency Box (Large Red Design)
1137
+
1138
+ For emergency contacts and urgent protocols:
1139
+
1140
+ ```latex
1141
+ \begin{emergencybox}
1142
+ \begin{itemize}
1143
+ \item \textbf{Emergency Services:} 911
1144
+ \item \textbf{Endocrinology Office:} [Phone] (business hours)
1145
+ \item \textbf{After-Hours Hotline:} [Phone] (nights/weekends)
1146
+ \item \textbf{Pharmacy:} [Phone and location]
1147
+ \end{itemize}
1148
+ \end{emergencybox}
1149
+ ```
1150
+
1151
+ **Use cases**: Emergency contacts, critical hotlines, urgent resource information
1152
+
1153
+ #### 6. Patient Info Box (White with Blue Border)
1154
+
1155
+ For patient demographics and baseline information:
1156
+
1157
+ ```latex
1158
+ \begin{patientinfo}
1159
+ \begin{tabular}{ll}
1160
+ \textbf{Age:} & 23 years \\
1161
+ \textbf{Sex:} & Male \\
1162
+ \textbf{Diagnosis:} & Type 2 Diabetes Mellitus \\
1163
+ \textbf{Plan Start Date:} & \today \\
1164
+ \end{tabular}
1165
+ \end{patientinfo}
1166
+ ```
1167
+
1168
+ **Use cases**: Patient information sections, demographic data
1169
+
1170
+ ### Professional Table Formatting
1171
+
1172
+ Enhanced table environment with medical styling:
1173
+
1174
+ ```latex
1175
+ \begin{medtable}{Caption Text}
1176
+ \begin{tabular}{|p{5cm}|p{4cm}|p{4.5cm}|}
1177
+ \hline
1178
+ \tableheadercolor % Blue header with white text
1179
+ \textcolor{white}{\textbf{Column 1}} &
1180
+ \textcolor{white}{\textbf{Column 2}} &
1181
+ \textcolor{white}{\textbf{Column 3}} \\
1182
+ \hline
1183
+ Data row 1 content & Value 1 & Details 1 \\
1184
+ \hline
1185
+ \tablerowcolor % Alternating light gray row
1186
+ Data row 2 content & Value 2 & Details 2 \\
1187
+ \hline
1188
+ Data row 3 content & Value 3 & Details 3 \\
1189
+ \hline
1190
+ \end{tabular}
1191
+ \caption{Table caption}
1192
+ \end{medtable}
1193
+ ```
1194
+
1195
+ **Features:**
1196
+ - Blue headers with white text for visual prominence
1197
+ - Alternating row colors (`\tablerowcolor`) for improved readability
1198
+ - Automatic centering and spacing
1199
+ - Professional borders and padding
1200
+
1201
+ ### Using the Style Package
1202
+
1203
+ #### Basic Setup
1204
+
1205
+ 1. **Add to document preamble:**
1206
+
1207
+ ```latex
1208
+ % !TEX program = xelatex
1209
+ \documentclass[11pt,letterpaper]{article}
1210
+
1211
+ % Use custom medical treatment plan style
1212
+ \usepackage{medical_treatment_plan}
1213
+ \usepackage{natbib}
1214
+
1215
+ \begin{document}
1216
+ \maketitle
1217
+ % Your content here
1218
+ \end{document}
1219
+ ```
1220
+
1221
+ 2. **Ensure style file is in same directory** as your `.tex` file, or install to LaTeX path
1222
+
1223
+ 3. **Compile with XeLaTeX** (recommended for best results):
1224
+
1225
+ ```bash
1226
+ xelatex treatment_plan.tex
1227
+ bibtex treatment_plan
1228
+ xelatex treatment_plan.tex
1229
+ xelatex treatment_plan.tex
1230
+ ```
1231
+
1232
+ #### Custom Title Page
1233
+
1234
+ The package automatically formats the title with a professional blue header:
1235
+
1236
+ ```latex
1237
+ \title{\textbf{Individualized Diabetes Treatment Plan}\\
1238
+ \large{23-Year-Old Male Patient with Type 2 Diabetes}}
1239
+ \author{Comprehensive Care Plan}
1240
+ \date{\today}
1241
+
1242
+ \begin{document}
1243
+ \maketitle
1244
+ ```
1245
+
1246
+ This creates an eye-catching blue box with white text and clear hierarchy.
1247
+
1248
+ ### Compilation Requirements
1249
+
1250
+ **Required LaTeX Packages** (automatically loaded by the style):
1251
+ - `geometry` - Page layout and margins
1252
+ - `xcolor` - Color support
1253
+ - `tcolorbox` with `[most]` library - Custom colored boxes
1254
+ - `tikz` - Graphics and drawing
1255
+ - `fontspec` - Font management (XeLaTeX/LuaLaTeX)
1256
+ - `fancyhdr` - Custom headers and footers
1257
+ - `titlesec` - Section styling
1258
+ - `enumitem` - Enhanced list formatting
1259
+ - `booktabs` - Professional table rules
1260
+ - `longtable` - Multi-page tables
1261
+ - `array` - Enhanced table features
1262
+ - `colortbl` - Colored table cells
1263
+ - `hyperref` - Hyperlinks and PDF metadata
1264
+ - `natbib` - Bibliography management
1265
+
1266
+ **Recommended Compilation:**
1267
+
1268
+ ```bash
1269
+ # Using XeLaTeX (best font support)
1270
+ xelatex document.tex
1271
+ bibtex document
1272
+ xelatex document.tex
1273
+ xelatex document.tex
1274
+
1275
+ # Using PDFLaTeX (alternative)
1276
+ pdflatex document.tex
1277
+ bibtex document
1278
+ pdflatex document.tex
1279
+ pdflatex document.tex
1280
+ ```
1281
+
1282
+ ### Customization Options
1283
+
1284
+ #### Changing Colors
1285
+
1286
+ Edit the style file to modify the color scheme:
1287
+
1288
+ ```latex
1289
+ % In medical_treatment_plan.sty
1290
+ \definecolor{primaryblue}{RGB}{0, 102, 153} % Modify these
1291
+ \definecolor{secondaryblue}{RGB}{102, 178, 204}
1292
+ \definecolor{accentblue}{RGB}{0, 153, 204}
1293
+ \definecolor{successgreen}{RGB}{0, 153, 76}
1294
+ \definecolor{warningred}{RGB}{204, 0, 0}
1295
+ ```
1296
+
1297
+ #### Adjusting Page Layout
1298
+
1299
+ Modify geometry settings in the style file:
1300
+
1301
+ ```latex
1302
+ \RequirePackage[margin=1in, top=1.2in, bottom=1.2in]{geometry}
1303
+ ```
1304
+
1305
+ #### Custom Fonts (XeLaTeX only)
1306
+
1307
+ Uncomment and modify in the style file:
1308
+
1309
+ ```latex
1310
+ \setmainfont{Your Preferred Font}
1311
+ \setsansfont{Your Sans-Serif Font}
1312
+ ```
1313
+
1314
+ #### Header/Footer Customization
1315
+
1316
+ Modify in the style file:
1317
+
1318
+ ```latex
1319
+ \fancyhead[L]{\color{primaryblue}\sffamily\small\textbf{Treatment Plan Title}}
1320
+ \fancyhead[R]{\color{darkgray}\sffamily\small Patient Info}
1321
+ ```
1322
+
1323
+ ### Style Package Download and Installation
1324
+
1325
+ #### Option 1: Copy to Project Directory
1326
+
1327
+ Copy `assets/medical_treatment_plan.sty` to the same directory as your `.tex` file.
1328
+
1329
+ #### Option 2: Install to User TeX Directory
1330
+
1331
+ ```bash
1332
+ # Find your local texmf directory
1333
+ kpsewhich -var-value TEXMFHOME
1334
+
1335
+ # Copy to appropriate location (usually ~/texmf/tex/latex/)
1336
+ mkdir -p ~/texmf/tex/latex/medical_treatment_plan
1337
+ cp assets/medical_treatment_plan.sty ~/texmf/tex/latex/medical_treatment_plan/
1338
+
1339
+ # Update TeX file database
1340
+ texhash ~/texmf
1341
+ ```
1342
+
1343
+ #### Option 3: System-Wide Installation
1344
+
1345
+ ```bash
1346
+ # Copy to system texmf directory (requires sudo)
1347
+ sudo cp assets/medical_treatment_plan.sty /usr/local/texlive/texmf-local/tex/latex/
1348
+ sudo texhash
1349
+ ```
1350
+
1351
+ ### Additional Professional Styles (Optional)
1352
+
1353
+ Other medical/clinical document styles available from CTAN:
1354
+
1355
+ **Journal Styles:**
1356
+ ```bash
1357
+ # Install via TeX Live Manager
1358
+ tlmgr install nejm # New England Journal of Medicine
1359
+ tlmgr install jama # JAMA style
1360
+ tlmgr install bmj # British Medical Journal
1361
+ ```
1362
+
1363
+ **General Professional Styles:**
1364
+ ```bash
1365
+ tlmgr install apa7 # APA 7th edition (health sciences)
1366
+ tlmgr install IEEEtran # IEEE (medical devices/engineering)
1367
+ tlmgr install springer # Springer journals
1368
+ ```
1369
+
1370
+ **Download from CTAN:**
1371
+ - Visit: https://ctan.org/
1372
+ - Search for medical document classes
1373
+ - Download and install per package instructions
1374
+
1375
+ ### Troubleshooting
1376
+
1377
+ **Issue: Package not found**
1378
+ ```bash
1379
+ # Install missing packages via TeX Live Manager
1380
+ sudo tlmgr update --self
1381
+ sudo tlmgr install tcolorbox tikz pgf
1382
+ ```
1383
+
1384
+ **Issue: Missing characters (✓, ≥, etc.)**
1385
+ - Use XeLaTeX instead of PDFLaTeX
1386
+ - Or replace with LaTeX commands: `$\checkmark$`, `$\geq$`
1387
+ - Requires `amssymb` package for math symbols
1388
+
1389
+ **Issue: Header height warnings**
1390
+ - Style file sets `\setlength{\headheight}{22pt}`
1391
+ - Adjust if needed for your content
1392
+
1393
+ **Issue: Boxes not rendering**
1394
+ ```bash
1395
+ # Ensure complete tcolorbox installation
1396
+ sudo tlmgr install tcolorbox tikz pgf
1397
+ ```
1398
+
1399
+ **Issue: Font not found (XeLaTeX)**
1400
+ - Comment out custom font lines in .sty file
1401
+ - Or install specified fonts on your system
1402
+
1403
+ ### Best Practices for Styled Documents
1404
+
1405
+ 1. **Appropriate Box Usage**
1406
+ - Match box type to content purpose (goals→green, warnings→yellow/red)
1407
+ - Don't overuse boxes; reserve for truly important information
1408
+ - Keep box content concise and focused
1409
+
1410
+ 2. **Visual Hierarchy**
1411
+ - Use section styling for structure
1412
+ - Boxes for emphasis and organization
1413
+ - Tables for comparative data
1414
+ - Lists for sequential or grouped items
1415
+
1416
+ 3. **Color Consistency**
1417
+ - Stick to defined color scheme
1418
+ - Use `\textcolor{primaryblue}{\textbf{Text}}` for emphasis
1419
+ - Maintain consistent meaning (red=warning, green=goals)
1420
+
1421
+ 4. **White Space**
1422
+ - Don't overcrowd pages with boxes
1423
+ - Use `\vspace{0.5cm}` between major sections
1424
+ - Allow breathing room around colored elements
1425
+
1426
+ 5. **Professional Appearance**
1427
+ - Maintain readability as top priority
1428
+ - Ensure sufficient contrast for accessibility
1429
+ - Test print output in grayscale
1430
+ - Keep styling consistent throughout document
1431
+
1432
+ 6. **Table Formatting**
1433
+ - Use `\tableheadercolor` for all header rows
1434
+ - Apply `\tablerowcolor` to alternating rows in tables >3 rows
1435
+ - Keep column widths balanced
1436
+ - Use `\small\sffamily` for large tables
1437
+
1438
+ ### Example: Styled Treatment Plan Structure
1439
+
1440
+ ```latex
1441
+ % !TEX program = xelatex
1442
+ \documentclass[11pt,letterpaper]{article}
1443
+ \usepackage{medical_treatment_plan}
1444
+ \usepackage{natbib}
1445
+
1446
+ \title{\textbf{Comprehensive Treatment Plan}\\
1447
+ \large{Patient-Centered Care Strategy}}
1448
+ \author{Multidisciplinary Care Team}
1449
+ \date{\today}
1450
+
1451
+ \begin{document}
1452
+ \maketitle
1453
+
1454
+ \section*{Patient Information}
1455
+ \begin{patientinfo}
1456
+ % Demographics table
1457
+ \end{patientinfo}
1458
+
1459
+ \section{Executive Summary}
1460
+ \begin{keybox}[Plan Overview]
1461
+ % Key highlights
1462
+ \end{keybox}
1463
+
1464
+ \section{Treatment Goals}
1465
+ \begin{goalbox}[SMART Goals - 3 Months]
1466
+ \begin{medtable}{Primary Treatment Targets}
1467
+ % Goals table with colored headers
1468
+ \end{medtable}
1469
+ \end{goalbox}
1470
+
1471
+ \section{Medication Plan}
1472
+ \begin{infobox}[Titration Schedule]
1473
+ % Medication instructions
1474
+ \end{infobox}
1475
+
1476
+ \begin{warningbox}[Critical Decision Point]
1477
+ % Important safety information
1478
+ \end{warningbox}
1479
+
1480
+ \section{Emergency Protocols}
1481
+ \begin{emergencybox}
1482
+ % Emergency contacts
1483
+ \end{emergencybox}
1484
+
1485
+ \bibliographystyle{plainnat}
1486
+ \bibliography{references}
1487
+ \end{document}
1488
+ ```
1489
+
1490
+ ### Benefits of Professional Styling
1491
+
1492
+ **Clinical Practice:**
1493
+ - Faster information scanning during patient encounters
1494
+ - Clear visual hierarchy for critical vs. routine information
1495
+ - Professional appearance suitable for patient-facing documents
1496
+ - Color-coded sections reduce cognitive load
1497
+
1498
+ **Educational Use:**
1499
+ - Enhanced readability for teaching materials
1500
+ - Visual differentiation of concept types (goals, warnings, procedures)
1501
+ - Professional presentation for case discussions
1502
+ - Print and digital-ready formats
1503
+
1504
+ **Documentation Quality:**
1505
+ - Modern, polished appearance
1506
+ - Maintains clinical accuracy while improving aesthetics
1507
+ - Standardized formatting across treatment plans
1508
+ - Easy to customize for institutional branding
1509
+
1510
+ **Patient Engagement:**
1511
+ - More approachable than dense text documents
1512
+ - Color coding helps patients identify key sections
1513
+ - Professional appearance builds trust
1514
+ - Clear organization facilitates understanding
1515
+
1516
+ ## Ethical Considerations
1517
+
1518
+ ### Informed Consent
1519
+ All treatment plans should involve patient understanding and voluntary agreement to proposed interventions.
1520
+
1521
+ ### Cultural Sensitivity
1522
+ Treatment plans must respect diverse cultural beliefs, health practices, and communication styles.
1523
+
1524
+ ### Health Equity
1525
+ Consider social determinants of health, access barriers, and health disparities when developing plans.
1526
+
1527
+ ### Privacy Protection
1528
+ Maintain strict HIPAA compliance; de-identify all protected health information in shared documents.
1529
+
1530
+ ### Autonomy and Beneficence
1531
+ Balance medical recommendations with patient autonomy and values while promoting patient welfare.
1532
+
1533
+ ## License
1534
+
1535
+ Part of the Claude Scientific Writer project. See main LICENSE file.
1536
+