scientific-writer 2.3.1__py3-none-any.whl

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Files changed (315) hide show
  1. scientific_writer/.claude/WRITER.md +822 -0
  2. scientific_writer/.claude/settings.local.json +30 -0
  3. scientific_writer/.claude/skills/citation-management/SKILL.md +1046 -0
  4. scientific_writer/.claude/skills/citation-management/assets/bibtex_template.bib +264 -0
  5. scientific_writer/.claude/skills/citation-management/assets/citation_checklist.md +386 -0
  6. scientific_writer/.claude/skills/citation-management/references/bibtex_formatting.md +908 -0
  7. scientific_writer/.claude/skills/citation-management/references/citation_validation.md +794 -0
  8. scientific_writer/.claude/skills/citation-management/references/google_scholar_search.md +725 -0
  9. scientific_writer/.claude/skills/citation-management/references/metadata_extraction.md +870 -0
  10. scientific_writer/.claude/skills/citation-management/references/pubmed_search.md +839 -0
  11. scientific_writer/.claude/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
  12. scientific_writer/.claude/skills/citation-management/scripts/extract_metadata.py +569 -0
  13. scientific_writer/.claude/skills/citation-management/scripts/format_bibtex.py +349 -0
  14. scientific_writer/.claude/skills/citation-management/scripts/search_google_scholar.py +282 -0
  15. scientific_writer/.claude/skills/citation-management/scripts/search_pubmed.py +398 -0
  16. scientific_writer/.claude/skills/citation-management/scripts/validate_citations.py +497 -0
  17. scientific_writer/.claude/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
  18. scientific_writer/.claude/skills/clinical-reports/README.md +236 -0
  19. scientific_writer/.claude/skills/clinical-reports/SKILL.md +1088 -0
  20. scientific_writer/.claude/skills/clinical-reports/assets/case_report_template.md +352 -0
  21. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
  22. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
  23. scientific_writer/.claude/skills/clinical-reports/assets/consult_note_template.md +305 -0
  24. scientific_writer/.claude/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
  25. scientific_writer/.claude/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
  26. scientific_writer/.claude/skills/clinical-reports/assets/history_physical_template.md +305 -0
  27. scientific_writer/.claude/skills/clinical-reports/assets/lab_report_template.md +309 -0
  28. scientific_writer/.claude/skills/clinical-reports/assets/pathology_report_template.md +249 -0
  29. scientific_writer/.claude/skills/clinical-reports/assets/quality_checklist.md +338 -0
  30. scientific_writer/.claude/skills/clinical-reports/assets/radiology_report_template.md +318 -0
  31. scientific_writer/.claude/skills/clinical-reports/assets/soap_note_template.md +253 -0
  32. scientific_writer/.claude/skills/clinical-reports/references/case_report_guidelines.md +570 -0
  33. scientific_writer/.claude/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
  34. scientific_writer/.claude/skills/clinical-reports/references/data_presentation.md +530 -0
  35. scientific_writer/.claude/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
  36. scientific_writer/.claude/skills/clinical-reports/references/medical_terminology.md +588 -0
  37. scientific_writer/.claude/skills/clinical-reports/references/patient_documentation.md +744 -0
  38. scientific_writer/.claude/skills/clinical-reports/references/peer_review_standards.md +585 -0
  39. scientific_writer/.claude/skills/clinical-reports/references/regulatory_compliance.md +577 -0
  40. scientific_writer/.claude/skills/clinical-reports/scripts/check_deidentification.py +346 -0
  41. scientific_writer/.claude/skills/clinical-reports/scripts/compliance_checker.py +78 -0
  42. scientific_writer/.claude/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
  43. scientific_writer/.claude/skills/clinical-reports/scripts/format_adverse_events.py +103 -0
  44. scientific_writer/.claude/skills/clinical-reports/scripts/generate_report_template.py +163 -0
  45. scientific_writer/.claude/skills/clinical-reports/scripts/terminology_validator.py +133 -0
  46. scientific_writer/.claude/skills/clinical-reports/scripts/validate_case_report.py +334 -0
  47. scientific_writer/.claude/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
  48. scientific_writer/.claude/skills/document-skills/docx/LICENSE.txt +30 -0
  49. scientific_writer/.claude/skills/document-skills/docx/SKILL.md +197 -0
  50. scientific_writer/.claude/skills/document-skills/docx/docx-js.md +350 -0
  51. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  52. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  53. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  54. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  55. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  56. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  57. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  58. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  59. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  60. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  61. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  62. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  63. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  64. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  65. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  66. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  67. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  68. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  69. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  70. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  71. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  72. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  73. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  74. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  75. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  76. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  77. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  78. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  79. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  80. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  81. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  82. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
  83. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  84. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  85. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  86. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  87. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  88. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  89. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  90. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
  91. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
  92. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
  93. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
  94. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
  95. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
  96. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
  97. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
  98. scientific_writer/.claude/skills/document-skills/docx/ooxml.md +610 -0
  99. scientific_writer/.claude/skills/document-skills/docx/scripts/__init__.py +1 -0
  100. scientific_writer/.claude/skills/document-skills/docx/scripts/document.py +1276 -0
  101. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
  102. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
  103. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
  104. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
  105. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/people.xml +3 -0
  106. scientific_writer/.claude/skills/document-skills/docx/scripts/utilities.py +374 -0
  107. scientific_writer/.claude/skills/document-skills/pdf/LICENSE.txt +30 -0
  108. scientific_writer/.claude/skills/document-skills/pdf/SKILL.md +294 -0
  109. scientific_writer/.claude/skills/document-skills/pdf/forms.md +205 -0
  110. scientific_writer/.claude/skills/document-skills/pdf/reference.md +612 -0
  111. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
  112. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
  113. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
  114. scientific_writer/.claude/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
  115. scientific_writer/.claude/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
  116. scientific_writer/.claude/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
  117. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
  118. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
  119. scientific_writer/.claude/skills/document-skills/pptx/LICENSE.txt +30 -0
  120. scientific_writer/.claude/skills/document-skills/pptx/SKILL.md +484 -0
  121. scientific_writer/.claude/skills/document-skills/pptx/html2pptx.md +625 -0
  122. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  123. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  124. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  125. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  126. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  127. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  128. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  129. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  130. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  131. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  132. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  133. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  134. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  135. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  136. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  137. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  138. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  139. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  140. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  141. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  142. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  143. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  144. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  145. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  146. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  147. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  148. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  149. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  150. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  151. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  152. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  153. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
  154. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  155. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  156. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  157. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  158. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  159. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  160. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  161. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/pack.py +159 -0
  162. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/unpack.py +29 -0
  163. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validate.py +69 -0
  164. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +15 -0
  165. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/base.py +951 -0
  166. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +274 -0
  167. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +315 -0
  168. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +279 -0
  169. scientific_writer/.claude/skills/document-skills/pptx/ooxml.md +427 -0
  170. scientific_writer/.claude/skills/document-skills/pptx/scripts/html2pptx.js +979 -0
  171. scientific_writer/.claude/skills/document-skills/pptx/scripts/inventory.py +1020 -0
  172. scientific_writer/.claude/skills/document-skills/pptx/scripts/rearrange.py +231 -0
  173. scientific_writer/.claude/skills/document-skills/pptx/scripts/replace.py +385 -0
  174. scientific_writer/.claude/skills/document-skills/pptx/scripts/thumbnail.py +450 -0
  175. scientific_writer/.claude/skills/document-skills/xlsx/LICENSE.txt +30 -0
  176. scientific_writer/.claude/skills/document-skills/xlsx/SKILL.md +289 -0
  177. scientific_writer/.claude/skills/document-skills/xlsx/recalc.py +178 -0
  178. scientific_writer/.claude/skills/hypothesis-generation/SKILL.md +155 -0
  179. scientific_writer/.claude/skills/hypothesis-generation/assets/hypothesis_output_template.md +302 -0
  180. scientific_writer/.claude/skills/hypothesis-generation/references/experimental_design_patterns.md +327 -0
  181. scientific_writer/.claude/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +196 -0
  182. scientific_writer/.claude/skills/hypothesis-generation/references/literature_search_strategies.md +505 -0
  183. scientific_writer/.claude/skills/latex-posters/README.md +417 -0
  184. scientific_writer/.claude/skills/latex-posters/SKILL.md +919 -0
  185. scientific_writer/.claude/skills/latex-posters/assets/baposter_template.tex +257 -0
  186. scientific_writer/.claude/skills/latex-posters/assets/beamerposter_template.tex +244 -0
  187. scientific_writer/.claude/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
  188. scientific_writer/.claude/skills/latex-posters/assets/tikzposter_template.tex +251 -0
  189. scientific_writer/.claude/skills/latex-posters/references/latex_poster_packages.md +745 -0
  190. scientific_writer/.claude/skills/latex-posters/references/poster_content_guide.md +748 -0
  191. scientific_writer/.claude/skills/latex-posters/references/poster_design_principles.md +806 -0
  192. scientific_writer/.claude/skills/latex-posters/references/poster_layout_design.md +900 -0
  193. scientific_writer/.claude/skills/latex-posters/scripts/review_poster.sh +214 -0
  194. scientific_writer/.claude/skills/literature-review/SKILL.md +546 -0
  195. scientific_writer/.claude/skills/literature-review/assets/review_template.md +412 -0
  196. scientific_writer/.claude/skills/literature-review/references/citation_styles.md +166 -0
  197. scientific_writer/.claude/skills/literature-review/references/database_strategies.md +381 -0
  198. scientific_writer/.claude/skills/literature-review/scripts/generate_pdf.py +176 -0
  199. scientific_writer/.claude/skills/literature-review/scripts/search_databases.py +303 -0
  200. scientific_writer/.claude/skills/literature-review/scripts/verify_citations.py +222 -0
  201. scientific_writer/.claude/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
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+ # DARPA (Defense Advanced Research Projects Agency) Grant Writing Guidelines
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+
3
+ ## Agency Overview
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+
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+ **Mission**: Make pivotal investments in breakthrough technologies for national security
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+
7
+ **Tagline**: "Creating breakthrough technologies and capabilities for national security"
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+
9
+ **Annual Budget**: ~$4 billion
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+
11
+ **Website**: https://www.darpa.mil
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+
13
+ **Key Characteristics**:
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+ - High-risk, high-reward research
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+ - Focused on revolutionary breakthroughs, not incremental advances
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+ - Technology transition to military and commercial applications
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+ - Program managers with broad autonomy
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+ - ~3-5 year programs with defined end goals
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+ - Strong emphasis on prototypes and demonstrations
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+ - "DARPA-hard" problems that others won't or can't tackle
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+
22
+ **The DARPA Difference**:
23
+ - NOT basic research (that's ONR, AFOSR, ARO)
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+ - NOT development and procurement (that's service acquisition)
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+ - Focused on proof-of-concept to prototype stage
26
+ - Tolerates and expects failure in pursuit of breakthroughs
27
+ - Rapid transition to operational use
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+
29
+ ## DARPA Organization
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+
31
+ ### Six Technical Offices
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+
33
+ #### 1. BTO (Biological Technologies Office)
34
+ **Focus**: Biology as technology, human-machine interfaces, synthetic biology
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+
36
+ **Example Programs**:
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+ - Neural interfaces and brain-computer interfaces
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+ - Synthetic biology and living foundries
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+ - Pandemic prevention and response
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+ - Human performance enhancement
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+ - Biotechnology for manufacturing
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+
43
+ #### 2. DSO (Defense Sciences Office)
44
+ **Focus**: High-risk, high-payoff research in physical and mathematical sciences
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+
46
+ **Example Programs**:
47
+ - Novel materials and chemistry
48
+ - Quantum technologies
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+ - Electromagnetics and photonics
50
+ - Mathematics and algorithms
51
+ - Fundamental limits of physics
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+
53
+ #### 3. I2O (Information Innovation Office)
54
+ **Focus**: Information advantage through computing, communications, and cyber
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+
56
+ **Example Programs**:
57
+ - Artificial intelligence and machine learning
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+ - Cybersecurity and cyber resilience
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+ - Communications and networking
60
+ - Data analytics and processing
61
+ - Human-computer interaction
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+
63
+ #### 4. MTO (Microsystems Technology Office)
64
+ **Focus**: Microelectronics, photonics, and heterogeneous microsystems
65
+
66
+ **Example Programs**:
67
+ - Advanced electronics and integrated circuits
68
+ - Photonics and optical systems
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+ - Novel computational architectures
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+ - RF and millimeter-wave systems
71
+ - MEMS and sensors
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+
73
+ #### 5. STO (Strategic Technology Office)
74
+ **Focus**: Technologies for space, air, maritime, and ground systems
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+
76
+ **Example Programs**:
77
+ - Autonomous systems (air, ground, sea, space)
78
+ - Advanced propulsion and power
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+ - Space technologies
80
+ - Electronic warfare
81
+ - Long-range precision fires
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+
83
+ #### 6. TTO (Tactical Technology Office)
84
+ **Focus**: Near-term technologies for ground, maritime, and expeditionary forces
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+
86
+ **Example Programs**:
87
+ - Tactical autonomy
88
+ - Advanced weapons
89
+ - Urban operations
90
+ - Maneuver and logistics
91
+ - Special operations support
92
+
93
+ ## How DARPA Works
94
+
95
+ ### Program Manager-Centric Model
96
+
97
+ **Program Managers (PMs)**:
98
+ - ~100 PMs across DARPA
99
+ - Hired on 3-5 year rotations from academia, industry, government labs
100
+ - Have significant autonomy to create and run programs
101
+ - Identify "DARPA-hard" problems and solutions
102
+ - Manage portfolios of 10-20 projects
103
+
104
+ **PM Lifecycle**:
105
+ 1. **Develop vision**: Identify transformative opportunity
106
+ 2. **Create program**: Design research thrusts and metrics
107
+ 3. **Issue BAA**: Broad Agency Announcement for proposals
108
+ 4. **Select teams**: Choose performers and structure program
109
+ 5. **Manage program**: Track milestones, adjust course, transition technology
110
+ 6. **Transition**: Hand off successful technologies to services or industry
111
+
112
+ **Implication for Proposers**:
113
+ - PMs have the vision—your job is to execute it
114
+ - Contact PM before proposing (almost always required)
115
+ - Understand PM's technical vision and goals
116
+ - Build relationship with PM (within ethical bounds)
117
+
118
+ ### The "DARPA-Hard" Test
119
+
120
+ **Three Questions Every DARPA Program Must Answer**:
121
+
122
+ 1. **What are you trying to do?**
123
+ - Articulate objectives using absolutely no jargon
124
+ - Clear, specific technical goal
125
+
126
+ 2. **How is it done today, and what are the limits of current practice?**
127
+ - What's the current state of the art?
128
+ - Why are current approaches insufficient?
129
+ - What fundamental barriers exist?
130
+
131
+ 3. **What is new in your approach, and why do you think it will be successful?**
132
+ - What's the breakthrough insight or capability?
133
+ - Why hasn't this been done before?
134
+ - What's changed to make it possible now?
135
+
136
+ **Additional Considerations**:
137
+ - **Who cares?** (What's the national security impact?)
138
+ - **What if you're right?** (What becomes possible?)
139
+ - **What if you're wrong?** (Is the risk acceptable?)
140
+ - **What if you succeed?** (Is there a transition path?)
141
+
142
+ **DARPA Seeks**:
143
+ - **High Risk**: 50% chance of failure is acceptable
144
+ - **High Reward**: 10x improvement, not 10% improvement
145
+ - **Measurable**: Clear metrics of success
146
+ - **Transitional**: Path to operational use or commercial adoption
147
+
148
+ ## Types of DARPA Solicitations
149
+
150
+ ### 1. Broad Agency Announcements (BAAs)
151
+
152
+ **Most Common Mechanism**: Open solicitations for specific program areas
153
+
154
+ **Characteristics**:
155
+ - Issued by program managers for specific programs
156
+ - Describe technical objectives and research thrusts
157
+ - Multiple submission deadlines or rolling submission
158
+ - Full proposals typically 20-40 pages
159
+ - Often require abstract or white paper first
160
+
161
+ **Types of BAAs**:
162
+
163
+ **Program BAAs**: For specific named programs
164
+ - Clear technical objectives and metrics
165
+ - Defined research areas (thrusts)
166
+ - Specified deliverables and milestones
167
+ - Known PM with clear vision
168
+
169
+ **Office-Wide BAAs**: General solicitations by technical office
170
+ - Broader scope, less prescriptive
171
+ - Looking for transformative ideas
172
+ - More flexibility in approach
173
+ - May have multiple areas of interest
174
+
175
+ ### 2. Small Business Innovation Research (SBIR)
176
+
177
+ **For Small Businesses**:
178
+ - **Phase I**: $150K-$250K, 6-9 months (feasibility)
179
+ - **Phase II**: $1M-$2M, 2 years (development)
180
+ - **Phase III**: Non-SBIR funds (commercialization)
181
+
182
+ ### 3. Proposers Days and Special Notices
183
+
184
+ **Proposers Day**: Pre-solicitation event
185
+ - PM presents program vision and objectives
186
+ - Q&A with potential proposers
187
+ - Networking for team formation
188
+ - Often required or strongly encouraged to attend
189
+
190
+ **Special Notices**: Requests for Information (RFIs), teaming opportunities
191
+
192
+ ## DARPA Proposal Structure
193
+
194
+ **Note**: Format varies by BAA. **Always follow the specific BAA instructions precisely.**
195
+
196
+ ### Typical Structure
197
+
198
+ #### Volume 1: Technical and Management Proposal (20-40 pages)
199
+
200
+ **Section 1: Executive Summary** (1-2 pages)
201
+ - Overview of proposed research
202
+ - Technical approach and innovation
203
+ - Expected outcomes and deliverables
204
+ - Team qualifications
205
+ - Alignment with BAA objectives
206
+
207
+ **Section 2: Goals and Impact** (2-3 pages)
208
+ - Statement of the problem
209
+ - Importance and national security relevance
210
+ - Current state of the art and limitations
211
+ - How your work will advance the state of the art
212
+ - Impact if successful (What if true? Who cares?)
213
+ - Alignment with DARPA program goals
214
+
215
+ **Section 3: Technical Approach and Innovation** (10-20 pages)
216
+ - Detailed technical plan organized by phase or thrust
217
+ - Novel approaches and why they will work
218
+ - Technical risks and mitigation strategies
219
+ - Preliminary results or proof-of-concept data
220
+ - Technical barriers and how to overcome them
221
+ - Innovation and differentiation from existing work
222
+
223
+ **Organized by Phase** (typical):
224
+
225
+ **Phase 1 (Feasibility)**: 12-18 months
226
+ - Technical objectives and milestones
227
+ - Approach and methodology
228
+ - Expected outcomes
229
+ - Metrics for success
230
+ - Go/no-go criteria for Phase 2
231
+
232
+ **Phase 2 (Development)**: 18-24 months
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+ - Building on Phase 1 results
234
+ - System integration and optimization
235
+ - Testing and validation
236
+ - Prototype development
237
+ - Metrics and evaluation
238
+
239
+ **Phase 3 (Demonstration)**: 12-18 months (if applicable)
240
+ - Field testing or operational demonstration
241
+ - Transition activities
242
+ - Handoff to transition partner
243
+
244
+ **Section 4: Capabilities and Resources** (2-3 pages)
245
+ - Team qualifications and expertise
246
+ - Facilities and equipment
247
+ - Relevant prior work and publications
248
+ - Subcontractor and collaborator roles
249
+ - Organizational structure
250
+
251
+ **Section 5: Statement of Work (SOW)** (3-5 pages)
252
+ - Detailed task breakdown
253
+ - Deliverables for each task
254
+ - Milestones and metrics
255
+ - Timeline (Gantt chart)
256
+ - Dependencies and critical path
257
+ - Government furnished property or information (if applicable)
258
+
259
+ **Section 6: Schedule and Milestones** (1-2 pages)
260
+ - Integrated master schedule
261
+ - Key decision points
262
+ - Deliverable schedule
263
+ - Go/no-go criteria
264
+ - Reporting and meeting schedule
265
+
266
+ **Section 7: Technology Transition Plan** (2-3 pages)
267
+ - Potential transition partners (military services, industry)
268
+ - Pathway to operational use or commercialization
269
+ - Market or operational analysis
270
+ - Transition activities during the program
271
+ - IP and licensing strategy (if applicable)
272
+
273
+ #### Volume 2: Cost Proposal (separate)
274
+
275
+ **Detailed Budget**:
276
+ - Costs by phase, task, and year
277
+ - Labor (personnel, hours, rates)
278
+ - Materials and supplies
279
+ - Equipment
280
+ - Travel
281
+ - Subcontracts
282
+ - Other direct costs
283
+ - Indirect costs (overhead, G&A)
284
+ - Fee or profit (for industry)
285
+
286
+ **Cost Narrative**:
287
+ - Justification for each cost element
288
+ - Labor categories and rates
289
+ - Basis of estimate
290
+ - Cost realism analysis
291
+ - Supporting documentation
292
+
293
+ **Supporting Documentation**:
294
+ - Cost accounting standards
295
+ - Approved indirect rate agreements
296
+ - Subcontractor quotes or cost proposals
297
+
298
+ #### Additional Volumes (if required)
299
+
300
+ **Attachments**:
301
+ - Quad charts (1-slide summary)
302
+ - Relevant publications or technical papers
303
+ - Letters of commitment from collaborators
304
+ - Facilities descriptions
305
+ - Equipment lists
306
+
307
+ ## Review Criteria
308
+
309
+ ### DARPA Evaluation Factors (Typical)
310
+
311
+ **Primary Criteria** (usually equal weight):
312
+
313
+ 1. **Overall Scientific and Technical Merit**
314
+ - Technical soundness and feasibility
315
+ - Innovation and novelty
316
+ - Likelihood of achieving objectives
317
+ - Technical approach and methodology
318
+ - Understanding of problem and prior art
319
+ - Risk and risk mitigation
320
+
321
+ 2. **Potential Contribution and Relevance to DARPA Mission**
322
+ - Alignment with program objectives
323
+ - National security impact
324
+ - Advancement over state of the art
325
+ - Potential for revolutionary breakthrough
326
+ - "What if true? Who cares?" test
327
+
328
+ 3. **Cost Realism and Reasonableness**
329
+ - Budget aligned with technical plan
330
+ - Costs justified and realistic
331
+ - Value for investment
332
+ - Cost versus benefit analysis
333
+
334
+ 4. **Capabilities and Related Experience**
335
+ - Team qualifications and track record
336
+ - Facilities and resources adequate
337
+ - Relevant prior work
338
+ - Ability to deliver on time and on budget
339
+ - Management approach
340
+
341
+ 5. **Technology Transition**
342
+ - Pathway to operational use or market
343
+ - Transition partnerships
344
+ - Market analysis (if applicable)
345
+ - Plans for follow-on development
346
+ - IP strategy supporting transition
347
+
348
+ ### The "Heilmeier Catechism"
349
+
350
+ **DARPA uses this set of questions** (created by former DARPA director George Heilmeier):
351
+
352
+ 1. What are you trying to do? Articulate your objectives using absolutely no jargon.
353
+ 2. How is it done today, and what are the limits of current practice?
354
+ 3. What is new in your approach and why do you think it will be successful?
355
+ 4. Who cares? If you succeed, what difference will it make?
356
+ 5. What are the risks?
357
+ 6. How much will it cost?
358
+ 7. How long will it take?
359
+ 8. What are the mid-term and final "exams" to check for success?
360
+
361
+ **Your proposal should clearly answer all eight questions.**
362
+
363
+ ## DARPA Proposing Strategy
364
+
365
+ ### Before Writing
366
+
367
+ **1. Contact the Program Manager**
368
+ - Email PM to introduce yourself and idea
369
+ - Request call to discuss fit with program
370
+ - Attend Proposers Day if available
371
+ - Ask clarifying questions about BAA
372
+
373
+ **2. Form a Strong Team**
374
+ - DARPA values multidisciplinary teams
375
+ - Include complementary expertise
376
+ - Mix of academia, industry, government labs
377
+ - Clearly defined roles
378
+ - Prior collaboration history (if possible)
379
+
380
+ **3. Understand the Vision**
381
+ - What is the PM trying to achieve?
382
+ - What technical barriers need to be overcome?
383
+ - What does success look like?
384
+ - What are the program metrics?
385
+
386
+ **4. Identify Transition Path**
387
+ - Who will use the technology?
388
+ - What's the path from prototype to product?
389
+ - Who are potential transition partners?
390
+ - What's the market or operational need?
391
+
392
+ ### Writing the Proposal
393
+
394
+ **Lead with Impact**:
395
+ - Open with the "so what?"
396
+ - National security or economic impact
397
+ - What becomes possible if you succeed?
398
+
399
+ **Be Concrete and Specific**:
400
+ - Clear technical objectives with metrics
401
+ - Measurable milestones
402
+ - Quantitative targets (10x improvement, not "better")
403
+ - Specific deliverables
404
+
405
+ **Demonstrate Innovation**:
406
+ - What's the breakthrough?
407
+ - Why hasn't this been done before?
408
+ - What's changed to make it possible now?
409
+ - How is this different from evolutionary approaches?
410
+
411
+ **Address Risk Head-On**:
412
+ - Identify technical risks explicitly
413
+ - Explain mitigation strategies
414
+ - Show that you've thought through failure modes
415
+ - DARPA expects risk—don't hide it, manage it
416
+
417
+ **Show You Can Execute**:
418
+ - Detailed project plan with milestones
419
+ - Team with relevant track record
420
+ - Realistic schedule and budget
421
+ - Go/no-go decision points
422
+ - Management approach for complex programs
423
+
424
+ **Emphasize Transition**:
425
+ - Who will use the results?
426
+ - Path to operationalization or commercialization
427
+ - Engagement with potential users during program
428
+ - IP strategy that enables transition
429
+
430
+ ### Common Mistakes
431
+
432
+ 1. **Incremental Research**: Proposing 10% improvement instead of 10x
433
+ 2. **Academic Focus**: Pure research without application focus
434
+ 3. **No Transition Plan**: No pathway to use or commercialization
435
+ 4. **Ignoring PM Vision**: Not aligned with program objectives
436
+ 5. **Vague Metrics**: "Improve" or "enhance" instead of quantitative targets
437
+ 6. **Underestimating Risk**: Claiming low risk (DARPA wants high risk, high reward)
438
+ 7. **Weak Team**: Insufficient expertise or poorly defined roles
439
+ 8. **No Differentiation**: Similar to existing efforts without clear advantage
440
+ 9. **Ignoring BAA**: Not following proposal format or requirements
441
+ 10. **Late Contact with PM**: Waiting until proposal due date to engage
442
+
443
+ ## DARPA Contracting and Performance
444
+
445
+ ### Award Types
446
+
447
+ **Procurement Contracts**: Most common for industry
448
+ - Firm Fixed Price (FFP)
449
+ - Cost Plus Fixed Fee (CPFF)
450
+ - Cost Plus Incentive Fee (CPIF)
451
+
452
+ **Grants and Cooperative Agreements**: For universities and nonprofits
453
+ - Grants: Minimal government involvement
454
+ - Cooperative Agreements: Substantial government involvement
455
+
456
+ **Other Transaction Agreements (OTAs)**: Flexible arrangements
457
+ - For research not requiring FAR compliance
458
+ - Faster, more flexible terms
459
+ - Common for consortia and partnerships
460
+
461
+ ### Program Execution
462
+
463
+ **Kickoff Meeting**: Program launch with all performers
464
+ - PM presents program vision and goals
465
+ - Performers present approaches
466
+ - Technical exchange and collaboration
467
+
468
+ **Quarterly Reviews**: Progress reviews (virtual or in-person)
469
+ - Technical progress against milestones
470
+ - Challenges and solutions
471
+ - Path forward
472
+ - PM feedback and course corrections
473
+
474
+ **Annual or Phase Reviews**: Major assessment points
475
+ - Comprehensive technical review
476
+ - Go/no-go decisions
477
+ - Budget and schedule adjustments
478
+
479
+ **Site Visits**: PM and team visit performer sites
480
+ - See technical work firsthand
481
+ - Deep dive on specific areas
482
+ - Team building and collaboration
483
+
484
+ **Technical Interchange Meetings (TIMs)**: Deep dives on technical topics
485
+ - Cross-performer collaboration
486
+ - Sharing of results and approaches
487
+ - Problem-solving sessions
488
+
489
+ ### Deliverables and Reporting
490
+
491
+ **Monthly Reports**: Brief progress updates
492
+ - Technical progress
493
+ - Budget status
494
+ - Issues and concerns
495
+
496
+ **Quarterly Reports**: Detailed technical reporting
497
+ - Accomplishments against milestones
498
+ - Data and results
499
+ - Upcoming activities
500
+ - Publications and IP
501
+
502
+ **Final Report**: Comprehensive program summary
503
+ - Technical achievements
504
+ - Lessons learned
505
+ - Transition activities
506
+ - Future directions
507
+
508
+ **Technical Data and Prototypes**: Specified in contract
509
+ - Software and code
510
+ - Hardware prototypes
511
+ - Data sets
512
+ - Documentation
513
+
514
+ ## DARPA Culture and Expectations
515
+
516
+ ### High Risk is Expected
517
+
518
+ - DARPA programs should have ~50% probability of failure
519
+ - Failure is acceptable if lessons are learned
520
+ - "Fail fast" to redirect resources
521
+ - Transparency about challenges valued
522
+
523
+ ### Rapid Pivots
524
+
525
+ - PM may redirect program based on results
526
+ - Flexibility to pursue unexpected opportunities
527
+ - Willingness to stop unproductive efforts
528
+ - Adaptability is key
529
+
530
+ ### Transition Focus
531
+
532
+ - Technology must have a path to use
533
+ - Engagement with transition partners during program
534
+ - Demonstrate prototypes and capabilities
535
+ - Handoff to services or industry
536
+
537
+ ### Collaboration and Teaming
538
+
539
+ - Performers expected to collaborate
540
+ - Share results and insights (within IP bounds)
541
+ - Attend all program meetings
542
+ - Support overall program goals, not just own project
543
+
544
+ ## Recent DARPA Priorities and Programs
545
+
546
+ ### Key Technology Areas (2024-2025)
547
+
548
+ **Artificial Intelligence and Autonomy**:
549
+ - Trustworthy AI
550
+ - AI reasoning and understanding
551
+ - Human-AI teaming
552
+ - Autonomous systems across domains
553
+
554
+ **Quantum Technologies**:
555
+ - Quantum computing and algorithms
556
+ - Quantum sensing and metrology
557
+ - Quantum communications
558
+ - Post-quantum cryptography
559
+
560
+ **Biotechnology**:
561
+ - Pandemic prevention and response
562
+ - Synthetic biology
563
+ - Human performance
564
+ - Bio-manufacturing
565
+
566
+ **Microelectronics and Computing**:
567
+ - Advanced chip design and manufacturing
568
+ - Novel computing architectures
569
+ - 3D heterogeneous integration
570
+ - RF and millimeter-wave systems
571
+
572
+ **Hypersonics and Advanced Materials**:
573
+ - Hypersonic weapons and defense
574
+ - Advanced materials and manufacturing
575
+ - Thermal management
576
+ - Propulsion
577
+
578
+ **Space Technologies**:
579
+ - Space domain awareness
580
+ - On-orbit servicing and manufacturing
581
+ - Small satellite technologies
582
+ - Space-based intelligence
583
+
584
+ **Network Technologies**:
585
+ - Secure communications
586
+ - Resilient networks
587
+ - Spectrum dominance
588
+ - Cyber defense
589
+
590
+ ## Tips for Competitive DARPA Proposals
591
+
592
+ ### Do's
593
+
594
+ ✅ **Contact PM early** - Before writing, discuss your idea
595
+ ✅ **Attend Proposers Day** - Essential for understanding program
596
+ ✅ **Form strong team** - Complementary expertise, clear roles
597
+ ✅ **Be bold and ambitious** - 10x goals, not 10% improvements
598
+ ✅ **Quantify everything** - Specific metrics and targets
599
+ ✅ **Address transition** - Clear path to operational use
600
+ ✅ **Identify risks explicitly** - And explain mitigation
601
+ ✅ **Show preliminary results** - Proof of concept or feasibility
602
+ ✅ **Follow BAA exactly** - Format, page limits, content requirements
603
+ ✅ **Emphasize innovation** - What's revolutionary about your approach?
604
+
605
+ ### Don'ts
606
+
607
+ ❌ **Don't propose incremental research** - DARPA wants breakthroughs
608
+ ❌ **Don't ignore national security relevance** - "Who cares?" matters
609
+ ❌ **Don't be vague** - Specific objectives, metrics, deliverables
610
+ ❌ **Don't hide risk** - DARPA expects and values high-risk research
611
+ ❌ **Don't forget transition** - Technology must have path to use
612
+ ❌ **Don't propose basic research** - That's for ONR, AFOSR, ARO
613
+ ❌ **Don't exceed page limits** - Automatic rejection
614
+ ❌ **Don't ignore PM feedback** - They're setting the direction
615
+ ❌ **Don't propose alone if team needed** - DARPA values strong teams
616
+ ❌ **Don't submit without PM contact** - Critical to gauge fit
617
+
618
+ ## Resources
619
+
620
+ - **DARPA Website**: https://www.darpa.mil
621
+ - **DARPA Opportunities**: https://www.darpa.mil/work-with-us/opportunities
622
+ - **BAA Listings**: https://beta.sam.gov (search "DARPA")
623
+ - **DARPA Social Media**: Twitter @DARPA (PMs often announce programs)
624
+ - **SBIR/STTR**: https://www.darpa.mil/work-with-us/for-small-businesses
625
+ - **Heilmeier Catechism**: https://www.darpa.mil/about-us/timeline/heilmeier-catechism
626
+
627
+ ### Key Contacts
628
+
629
+ - **DARPA Contracting**: via BAA points of contact
630
+ - **Program Managers**: Contact info in BAAs and program pages
631
+ - **SBIR/STTR Office**: sbir@darpa.mil
632
+
633
+ ---
634
+
635
+ **Key Takeaway**: DARPA seeks revolutionary breakthroughs that advance national security, not incremental research. Successful proposals articulate clear, measurable objectives (answering "what if true?"), demonstrate innovative approaches to "DARPA-hard" problems, include strong multidisciplinary teams, proactively address technical risks, and provide realistic paths to transition. Early engagement with the Program Manager is essential—DARPA is a PM-driven agency where understanding the vision is critical to success.
636
+