scientific-writer 2.3.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (315) hide show
  1. scientific_writer/.claude/WRITER.md +822 -0
  2. scientific_writer/.claude/settings.local.json +30 -0
  3. scientific_writer/.claude/skills/citation-management/SKILL.md +1046 -0
  4. scientific_writer/.claude/skills/citation-management/assets/bibtex_template.bib +264 -0
  5. scientific_writer/.claude/skills/citation-management/assets/citation_checklist.md +386 -0
  6. scientific_writer/.claude/skills/citation-management/references/bibtex_formatting.md +908 -0
  7. scientific_writer/.claude/skills/citation-management/references/citation_validation.md +794 -0
  8. scientific_writer/.claude/skills/citation-management/references/google_scholar_search.md +725 -0
  9. scientific_writer/.claude/skills/citation-management/references/metadata_extraction.md +870 -0
  10. scientific_writer/.claude/skills/citation-management/references/pubmed_search.md +839 -0
  11. scientific_writer/.claude/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
  12. scientific_writer/.claude/skills/citation-management/scripts/extract_metadata.py +569 -0
  13. scientific_writer/.claude/skills/citation-management/scripts/format_bibtex.py +349 -0
  14. scientific_writer/.claude/skills/citation-management/scripts/search_google_scholar.py +282 -0
  15. scientific_writer/.claude/skills/citation-management/scripts/search_pubmed.py +398 -0
  16. scientific_writer/.claude/skills/citation-management/scripts/validate_citations.py +497 -0
  17. scientific_writer/.claude/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
  18. scientific_writer/.claude/skills/clinical-reports/README.md +236 -0
  19. scientific_writer/.claude/skills/clinical-reports/SKILL.md +1088 -0
  20. scientific_writer/.claude/skills/clinical-reports/assets/case_report_template.md +352 -0
  21. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
  22. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
  23. scientific_writer/.claude/skills/clinical-reports/assets/consult_note_template.md +305 -0
  24. scientific_writer/.claude/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
  25. scientific_writer/.claude/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
  26. scientific_writer/.claude/skills/clinical-reports/assets/history_physical_template.md +305 -0
  27. scientific_writer/.claude/skills/clinical-reports/assets/lab_report_template.md +309 -0
  28. scientific_writer/.claude/skills/clinical-reports/assets/pathology_report_template.md +249 -0
  29. scientific_writer/.claude/skills/clinical-reports/assets/quality_checklist.md +338 -0
  30. scientific_writer/.claude/skills/clinical-reports/assets/radiology_report_template.md +318 -0
  31. scientific_writer/.claude/skills/clinical-reports/assets/soap_note_template.md +253 -0
  32. scientific_writer/.claude/skills/clinical-reports/references/case_report_guidelines.md +570 -0
  33. scientific_writer/.claude/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
  34. scientific_writer/.claude/skills/clinical-reports/references/data_presentation.md +530 -0
  35. scientific_writer/.claude/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
  36. scientific_writer/.claude/skills/clinical-reports/references/medical_terminology.md +588 -0
  37. scientific_writer/.claude/skills/clinical-reports/references/patient_documentation.md +744 -0
  38. scientific_writer/.claude/skills/clinical-reports/references/peer_review_standards.md +585 -0
  39. scientific_writer/.claude/skills/clinical-reports/references/regulatory_compliance.md +577 -0
  40. scientific_writer/.claude/skills/clinical-reports/scripts/check_deidentification.py +346 -0
  41. scientific_writer/.claude/skills/clinical-reports/scripts/compliance_checker.py +78 -0
  42. scientific_writer/.claude/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
  43. scientific_writer/.claude/skills/clinical-reports/scripts/format_adverse_events.py +103 -0
  44. scientific_writer/.claude/skills/clinical-reports/scripts/generate_report_template.py +163 -0
  45. scientific_writer/.claude/skills/clinical-reports/scripts/terminology_validator.py +133 -0
  46. scientific_writer/.claude/skills/clinical-reports/scripts/validate_case_report.py +334 -0
  47. scientific_writer/.claude/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
  48. scientific_writer/.claude/skills/document-skills/docx/LICENSE.txt +30 -0
  49. scientific_writer/.claude/skills/document-skills/docx/SKILL.md +197 -0
  50. scientific_writer/.claude/skills/document-skills/docx/docx-js.md +350 -0
  51. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  52. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  53. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  54. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  55. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  56. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  57. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  58. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  59. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  60. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  61. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  62. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  63. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  64. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  65. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  66. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  67. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  68. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  69. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  70. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  71. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  72. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  73. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  74. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  75. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  76. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  77. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  78. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  79. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  80. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  81. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  82. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
  83. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  84. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  85. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  86. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  87. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  88. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  89. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  90. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
  91. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
  92. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
  93. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
  94. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
  95. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
  96. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
  97. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
  98. scientific_writer/.claude/skills/document-skills/docx/ooxml.md +610 -0
  99. scientific_writer/.claude/skills/document-skills/docx/scripts/__init__.py +1 -0
  100. scientific_writer/.claude/skills/document-skills/docx/scripts/document.py +1276 -0
  101. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
  102. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
  103. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
  104. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
  105. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/people.xml +3 -0
  106. scientific_writer/.claude/skills/document-skills/docx/scripts/utilities.py +374 -0
  107. scientific_writer/.claude/skills/document-skills/pdf/LICENSE.txt +30 -0
  108. scientific_writer/.claude/skills/document-skills/pdf/SKILL.md +294 -0
  109. scientific_writer/.claude/skills/document-skills/pdf/forms.md +205 -0
  110. scientific_writer/.claude/skills/document-skills/pdf/reference.md +612 -0
  111. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
  112. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
  113. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
  114. scientific_writer/.claude/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
  115. scientific_writer/.claude/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
  116. scientific_writer/.claude/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
  117. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
  118. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
  119. scientific_writer/.claude/skills/document-skills/pptx/LICENSE.txt +30 -0
  120. scientific_writer/.claude/skills/document-skills/pptx/SKILL.md +484 -0
  121. scientific_writer/.claude/skills/document-skills/pptx/html2pptx.md +625 -0
  122. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  123. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  124. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  125. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  126. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  127. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  128. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  129. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  130. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  131. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  132. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  133. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  134. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  135. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  136. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  137. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  138. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  139. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  140. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  141. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  142. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  143. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  144. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  145. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  146. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  147. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  148. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  149. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  150. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  151. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  152. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  153. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
  154. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  155. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  156. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  157. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  158. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  159. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  160. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  161. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/pack.py +159 -0
  162. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/unpack.py +29 -0
  163. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validate.py +69 -0
  164. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +15 -0
  165. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/base.py +951 -0
  166. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +274 -0
  167. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +315 -0
  168. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +279 -0
  169. scientific_writer/.claude/skills/document-skills/pptx/ooxml.md +427 -0
  170. scientific_writer/.claude/skills/document-skills/pptx/scripts/html2pptx.js +979 -0
  171. scientific_writer/.claude/skills/document-skills/pptx/scripts/inventory.py +1020 -0
  172. scientific_writer/.claude/skills/document-skills/pptx/scripts/rearrange.py +231 -0
  173. scientific_writer/.claude/skills/document-skills/pptx/scripts/replace.py +385 -0
  174. scientific_writer/.claude/skills/document-skills/pptx/scripts/thumbnail.py +450 -0
  175. scientific_writer/.claude/skills/document-skills/xlsx/LICENSE.txt +30 -0
  176. scientific_writer/.claude/skills/document-skills/xlsx/SKILL.md +289 -0
  177. scientific_writer/.claude/skills/document-skills/xlsx/recalc.py +178 -0
  178. scientific_writer/.claude/skills/hypothesis-generation/SKILL.md +155 -0
  179. scientific_writer/.claude/skills/hypothesis-generation/assets/hypothesis_output_template.md +302 -0
  180. scientific_writer/.claude/skills/hypothesis-generation/references/experimental_design_patterns.md +327 -0
  181. scientific_writer/.claude/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +196 -0
  182. scientific_writer/.claude/skills/hypothesis-generation/references/literature_search_strategies.md +505 -0
  183. scientific_writer/.claude/skills/latex-posters/README.md +417 -0
  184. scientific_writer/.claude/skills/latex-posters/SKILL.md +919 -0
  185. scientific_writer/.claude/skills/latex-posters/assets/baposter_template.tex +257 -0
  186. scientific_writer/.claude/skills/latex-posters/assets/beamerposter_template.tex +244 -0
  187. scientific_writer/.claude/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
  188. scientific_writer/.claude/skills/latex-posters/assets/tikzposter_template.tex +251 -0
  189. scientific_writer/.claude/skills/latex-posters/references/latex_poster_packages.md +745 -0
  190. scientific_writer/.claude/skills/latex-posters/references/poster_content_guide.md +748 -0
  191. scientific_writer/.claude/skills/latex-posters/references/poster_design_principles.md +806 -0
  192. scientific_writer/.claude/skills/latex-posters/references/poster_layout_design.md +900 -0
  193. scientific_writer/.claude/skills/latex-posters/scripts/review_poster.sh +214 -0
  194. scientific_writer/.claude/skills/literature-review/SKILL.md +546 -0
  195. scientific_writer/.claude/skills/literature-review/assets/review_template.md +412 -0
  196. scientific_writer/.claude/skills/literature-review/references/citation_styles.md +166 -0
  197. scientific_writer/.claude/skills/literature-review/references/database_strategies.md +381 -0
  198. scientific_writer/.claude/skills/literature-review/scripts/generate_pdf.py +176 -0
  199. scientific_writer/.claude/skills/literature-review/scripts/search_databases.py +303 -0
  200. scientific_writer/.claude/skills/literature-review/scripts/verify_citations.py +222 -0
  201. scientific_writer/.claude/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
  202. scientific_writer/.claude/skills/markitdown/LICENSE.txt +22 -0
  203. scientific_writer/.claude/skills/markitdown/OPENROUTER_INTEGRATION.md +359 -0
  204. scientific_writer/.claude/skills/markitdown/QUICK_REFERENCE.md +309 -0
  205. scientific_writer/.claude/skills/markitdown/README.md +184 -0
  206. scientific_writer/.claude/skills/markitdown/SKILL.md +450 -0
  207. scientific_writer/.claude/skills/markitdown/SKILL_SUMMARY.md +307 -0
  208. scientific_writer/.claude/skills/markitdown/assets/example_usage.md +463 -0
  209. scientific_writer/.claude/skills/markitdown/references/api_reference.md +399 -0
  210. scientific_writer/.claude/skills/markitdown/references/file_formats.md +542 -0
  211. scientific_writer/.claude/skills/markitdown/scripts/batch_convert.py +228 -0
  212. scientific_writer/.claude/skills/markitdown/scripts/convert_literature.py +283 -0
  213. scientific_writer/.claude/skills/markitdown/scripts/convert_with_ai.py +243 -0
  214. scientific_writer/.claude/skills/paper-2-web/SKILL.md +455 -0
  215. scientific_writer/.claude/skills/paper-2-web/references/installation.md +141 -0
  216. scientific_writer/.claude/skills/paper-2-web/references/paper2poster.md +346 -0
  217. scientific_writer/.claude/skills/paper-2-web/references/paper2video.md +305 -0
  218. scientific_writer/.claude/skills/paper-2-web/references/paper2web.md +187 -0
  219. scientific_writer/.claude/skills/paper-2-web/references/usage_examples.md +436 -0
  220. scientific_writer/.claude/skills/peer-review/SKILL.md +375 -0
  221. scientific_writer/.claude/skills/peer-review/references/common_issues.md +552 -0
  222. scientific_writer/.claude/skills/peer-review/references/reporting_standards.md +290 -0
  223. scientific_writer/.claude/skills/research-grants/README.md +285 -0
  224. scientific_writer/.claude/skills/research-grants/SKILL.md +896 -0
  225. scientific_writer/.claude/skills/research-grants/assets/budget_justification_template.md +453 -0
  226. scientific_writer/.claude/skills/research-grants/assets/nih_specific_aims_template.md +166 -0
  227. scientific_writer/.claude/skills/research-grants/assets/nsf_project_summary_template.md +92 -0
  228. scientific_writer/.claude/skills/research-grants/references/broader_impacts.md +392 -0
  229. scientific_writer/.claude/skills/research-grants/references/darpa_guidelines.md +636 -0
  230. scientific_writer/.claude/skills/research-grants/references/doe_guidelines.md +586 -0
  231. scientific_writer/.claude/skills/research-grants/references/nih_guidelines.md +851 -0
  232. scientific_writer/.claude/skills/research-grants/references/nsf_guidelines.md +570 -0
  233. scientific_writer/.claude/skills/research-grants/references/specific_aims_guide.md +458 -0
  234. scientific_writer/.claude/skills/research-lookup/README.md +116 -0
  235. scientific_writer/.claude/skills/research-lookup/SKILL.md +443 -0
  236. scientific_writer/.claude/skills/research-lookup/examples.py +174 -0
  237. scientific_writer/.claude/skills/research-lookup/lookup.py +93 -0
  238. scientific_writer/.claude/skills/research-lookup/research_lookup.py +335 -0
  239. scientific_writer/.claude/skills/research-lookup/scripts/research_lookup.py +261 -0
  240. scientific_writer/.claude/skills/scholar-evaluation/SKILL.md +254 -0
  241. scientific_writer/.claude/skills/scholar-evaluation/references/evaluation_framework.md +663 -0
  242. scientific_writer/.claude/skills/scholar-evaluation/scripts/calculate_scores.py +378 -0
  243. scientific_writer/.claude/skills/scientific-critical-thinking/SKILL.md +530 -0
  244. scientific_writer/.claude/skills/scientific-critical-thinking/references/common_biases.md +364 -0
  245. scientific_writer/.claude/skills/scientific-critical-thinking/references/evidence_hierarchy.md +484 -0
  246. scientific_writer/.claude/skills/scientific-critical-thinking/references/experimental_design.md +496 -0
  247. scientific_writer/.claude/skills/scientific-critical-thinking/references/logical_fallacies.md +478 -0
  248. scientific_writer/.claude/skills/scientific-critical-thinking/references/scientific_method.md +169 -0
  249. scientific_writer/.claude/skills/scientific-critical-thinking/references/statistical_pitfalls.md +506 -0
  250. scientific_writer/.claude/skills/scientific-schematics/SKILL.md +2035 -0
  251. scientific_writer/.claude/skills/scientific-schematics/assets/block_diagram_template.tex +199 -0
  252. scientific_writer/.claude/skills/scientific-schematics/assets/circuit_template.tex +159 -0
  253. scientific_writer/.claude/skills/scientific-schematics/assets/flowchart_template.tex +161 -0
  254. scientific_writer/.claude/skills/scientific-schematics/assets/pathway_template.tex +162 -0
  255. scientific_writer/.claude/skills/scientific-schematics/assets/tikz_styles.tex +422 -0
  256. scientific_writer/.claude/skills/scientific-schematics/references/best_practices.md +562 -0
  257. scientific_writer/.claude/skills/scientific-schematics/references/diagram_types.md +637 -0
  258. scientific_writer/.claude/skills/scientific-schematics/references/python_libraries.md +791 -0
  259. scientific_writer/.claude/skills/scientific-schematics/references/tikz_guide.md +734 -0
  260. scientific_writer/.claude/skills/scientific-schematics/scripts/circuit_generator.py +307 -0
  261. scientific_writer/.claude/skills/scientific-schematics/scripts/compile_tikz.py +292 -0
  262. scientific_writer/.claude/skills/scientific-schematics/scripts/generate_flowchart.py +281 -0
  263. scientific_writer/.claude/skills/scientific-schematics/scripts/pathway_diagram.py +406 -0
  264. scientific_writer/.claude/skills/scientific-writing/SKILL.md +443 -0
  265. scientific_writer/.claude/skills/scientific-writing/references/citation_styles.md +720 -0
  266. scientific_writer/.claude/skills/scientific-writing/references/figures_tables.md +806 -0
  267. scientific_writer/.claude/skills/scientific-writing/references/imrad_structure.md +658 -0
  268. scientific_writer/.claude/skills/scientific-writing/references/reporting_guidelines.md +748 -0
  269. scientific_writer/.claude/skills/scientific-writing/references/writing_principles.md +824 -0
  270. scientific_writer/.claude/skills/treatment-plans/README.md +488 -0
  271. scientific_writer/.claude/skills/treatment-plans/SKILL.md +1536 -0
  272. scientific_writer/.claude/skills/treatment-plans/assets/STYLING_QUICK_REFERENCE.md +185 -0
  273. scientific_writer/.claude/skills/treatment-plans/assets/chronic_disease_management_plan.tex +665 -0
  274. scientific_writer/.claude/skills/treatment-plans/assets/general_medical_treatment_plan.tex +547 -0
  275. scientific_writer/.claude/skills/treatment-plans/assets/medical_treatment_plan.sty +222 -0
  276. scientific_writer/.claude/skills/treatment-plans/assets/mental_health_treatment_plan.tex +774 -0
  277. scientific_writer/.claude/skills/treatment-plans/assets/one_page_treatment_plan.tex +193 -0
  278. scientific_writer/.claude/skills/treatment-plans/assets/pain_management_plan.tex +799 -0
  279. scientific_writer/.claude/skills/treatment-plans/assets/perioperative_care_plan.tex +753 -0
  280. scientific_writer/.claude/skills/treatment-plans/assets/quality_checklist.md +471 -0
  281. scientific_writer/.claude/skills/treatment-plans/assets/rehabilitation_treatment_plan.tex +756 -0
  282. scientific_writer/.claude/skills/treatment-plans/references/goal_setting_frameworks.md +411 -0
  283. scientific_writer/.claude/skills/treatment-plans/references/intervention_guidelines.md +507 -0
  284. scientific_writer/.claude/skills/treatment-plans/references/regulatory_compliance.md +476 -0
  285. scientific_writer/.claude/skills/treatment-plans/references/specialty_specific_guidelines.md +655 -0
  286. scientific_writer/.claude/skills/treatment-plans/references/treatment_plan_standards.md +485 -0
  287. scientific_writer/.claude/skills/treatment-plans/scripts/check_completeness.py +318 -0
  288. scientific_writer/.claude/skills/treatment-plans/scripts/generate_template.py +244 -0
  289. scientific_writer/.claude/skills/treatment-plans/scripts/timeline_generator.py +369 -0
  290. scientific_writer/.claude/skills/treatment-plans/scripts/validate_treatment_plan.py +367 -0
  291. scientific_writer/.claude/skills/venue-templates/SKILL.md +590 -0
  292. scientific_writer/.claude/skills/venue-templates/assets/grants/nih_specific_aims.tex +235 -0
  293. scientific_writer/.claude/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
  294. scientific_writer/.claude/skills/venue-templates/assets/journals/nature_article.tex +171 -0
  295. scientific_writer/.claude/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
  296. scientific_writer/.claude/skills/venue-templates/assets/journals/plos_one.tex +317 -0
  297. scientific_writer/.claude/skills/venue-templates/assets/posters/beamerposter_academic.tex +311 -0
  298. scientific_writer/.claude/skills/venue-templates/references/conferences_formatting.md +564 -0
  299. scientific_writer/.claude/skills/venue-templates/references/grants_requirements.md +787 -0
  300. scientific_writer/.claude/skills/venue-templates/references/journals_formatting.md +486 -0
  301. scientific_writer/.claude/skills/venue-templates/references/posters_guidelines.md +628 -0
  302. scientific_writer/.claude/skills/venue-templates/scripts/customize_template.py +206 -0
  303. scientific_writer/.claude/skills/venue-templates/scripts/query_template.py +260 -0
  304. scientific_writer/.claude/skills/venue-templates/scripts/validate_format.py +255 -0
  305. scientific_writer/__init__.py +43 -0
  306. scientific_writer/api.py +393 -0
  307. scientific_writer/cli.py +326 -0
  308. scientific_writer/core.py +275 -0
  309. scientific_writer/models.py +76 -0
  310. scientific_writer/utils.py +289 -0
  311. scientific_writer-2.3.1.dist-info/METADATA +272 -0
  312. scientific_writer-2.3.1.dist-info/RECORD +315 -0
  313. scientific_writer-2.3.1.dist-info/WHEEL +4 -0
  314. scientific_writer-2.3.1.dist-info/entry_points.txt +2 -0
  315. scientific_writer-2.3.1.dist-info/licenses/LICENSE +22 -0
@@ -0,0 +1,411 @@
1
+ # Goal Setting Frameworks for Treatment Plans
2
+
3
+ ## Overview
4
+
5
+ Effective treatment goals are the cornerstone of successful patient care. This reference provides comprehensive guidance on creating SMART goals, patient-centered outcome selection, and shared decision-making processes for treatment planning across all medical specialties.
6
+
7
+ ## SMART Goals Framework
8
+
9
+ ### Definition
10
+
11
+ **SMART** is a mnemonic for goal criteria that ensure objectives are well-defined and achievable:
12
+ - **S**pecific
13
+ - **M**easurable
14
+ - **A**chievable
15
+ - **R**elevant
16
+ - **T**ime-bound
17
+
18
+ ### 1. Specific
19
+
20
+ Goals must be clear, well-defined, and unambiguous.
21
+
22
+ **Components of Specificity**:
23
+ - **What**: Exactly what will be accomplished
24
+ - **Who**: Who is responsible (patient, provider, both)
25
+ - **Where**: Context or setting if relevant
26
+ - **Which**: Specific aspect of health/function addressed
27
+
28
+ **Examples**:
29
+
30
+ | Poor (Vague) | Good (Specific) |
31
+ |--------------|-----------------|
32
+ | "Feel better" | "Reduce depressive symptoms as measured by PHQ-9 score" |
33
+ | "Improve diabetes" | "Reduce HbA1c from current 8.5% to less than 7%" |
34
+ | "Get stronger" | "Increase right quadriceps strength from 3/5 to 4/5 on manual muscle testing" |
35
+ | "Lose weight" | "Reduce body weight by 10 pounds (from 210 to 200 lbs)" |
36
+ | "Exercise more" | "Walk 30 minutes, 5 days per week" |
37
+
38
+ ### 2. Measurable
39
+
40
+ Goals must include quantifiable metrics or observable criteria to track progress.
41
+
42
+ **Types of Measurement**:
43
+ - **Quantitative**: Numbers, percentages, scores, scales
44
+ - Lab values: HbA1c, LDL cholesterol, eGFR
45
+ - Vital signs: BP, heart rate, weight
46
+ - Scales: Pain (0-10 NRS), PHQ-9, GAD-7, FIM
47
+ - Functional: Distance walked, ROM degrees, strength grades
48
+
49
+ - **Qualitative Observable**: Behaviors that can be observed and verified
50
+ - "Patient demonstrates proper insulin injection technique"
51
+ - "Patient ambulates 150 feet with walker independently"
52
+ - "Patient follows 2-step commands"
53
+
54
+ **Examples**:
55
+
56
+ | Not Measurable | Measurable |
57
+ |----------------|------------|
58
+ | "Better blood pressure" | "Systolic BP <130 mmHg and diastolic BP <80 mmHg" |
59
+ | "Less pain" | "Pain intensity reduced from 7/10 to ≤4/10 on numeric rating scale" |
60
+ | "Improved mobility" | "Ambulate 300 feet with front-wheeled walker, supervision level" |
61
+ | "Take medications regularly" | "Medication adherence >90% as measured by refill rates" |
62
+ | "Sleep better" | "Sleep 7-8 hours nightly with <2 awakenings per night" |
63
+
64
+ ### 3. Achievable
65
+
66
+ Goals must be realistic given patient's capabilities, resources, and circumstances.
67
+
68
+ **Factors to Consider**:
69
+ - **Patient capabilities**: Physical, cognitive, psychological capacity
70
+ - **Severity of condition**: Advanced disease may have limited improvement potential
71
+ - **Treatment efficacy**: What can realistically be achieved with available treatments
72
+ - **Resources**: Access to care, medications, equipment, support
73
+ - **Time available**: Adequate time to achieve the goal
74
+ - **Motivation**: Patient's readiness to change and engagement
75
+
76
+ **Setting Achievable Goals**:
77
+ - Start with baseline assessment
78
+ - Know expected treatment effects (e.g., metformin reduces HbA1c by 1-1.5%)
79
+ - Set incremental goals for large changes (lose 5 lbs, then 10 lbs, rather than jump to 50 lbs)
80
+ - Challenge but don't overwhelm patient
81
+ - Adjust goals based on progress
82
+
83
+ **Examples**:
84
+
85
+ | Not Achievable | Achievable |
86
+ |----------------|------------|
87
+ | "Marathon ready in 1 month" (sedentary 70-year-old post-MI) | "Walk 1 mile continuously in 3 months" |
88
+ | "HbA1c from 12% to <6% in 6 weeks" | "HbA1c from 12% to <9% in 3 months, <7% in 6 months" |
89
+ | "Full knee ROM 0-140° by POD 3" (post-TKA) | "Knee ROM 0-90° by week 2, 0-110° by week 6" |
90
+ | "Cure chronic pain" | "Reduce pain from 7/10 to 4/10 and improve function by 30%" |
91
+
92
+ ### 4. Relevant
93
+
94
+ Goals must align with patient values, priorities, and overall treatment objectives.
95
+
96
+ **Relevance Criteria**:
97
+ - **Patient-centered**: Matters to the patient, reflects their priorities
98
+ - **Clinically meaningful**: Achieving goal improves health or quality of life
99
+ - **Aligned with diagnosis**: Goal addresses the condition being treated
100
+ - **Appropriate timing**: Right goal for current phase of treatment
101
+ - **Integrated**: Fits with other treatment goals
102
+
103
+ **Assessing Relevance**:
104
+ - Ask patient: "What's most important to you?" "What do you want to be able to do?"
105
+ - Ensure goals address functional limitations that matter to patient
106
+ - Connect clinical metrics to patient-meaningful outcomes (e.g., "HbA1c <7% reduces risk of vision loss")
107
+ - Avoid provider-driven goals that don't resonate with patient
108
+
109
+ **Examples**:
110
+
111
+ | Less Relevant | More Relevant |
112
+ |---------------|---------------|
113
+ | "Reduce medication count" (when medications controlling symptoms well) | "Simplify regimen to improve adherence" (if missing doses due to complexity) |
114
+ | "Perfect blood sugars" (patient's priority is energy) | "Improve energy levels through better glucose control" |
115
+ | "Walk 5 miles" (patient just wants to shop independently) | "Walk through grocery store without assistance" |
116
+
117
+ ### 5. Time-Bound
118
+
119
+ Goals must have specific deadlines or timeframes for achievement.
120
+
121
+ **Timeframe Considerations**:
122
+ - **Short-term goals**: Days to 3 months
123
+ - **Intermediate goals**: 3-6 months
124
+ - **Long-term goals**: 6-12 months or longer for chronic conditions
125
+ - **Reassessment intervals**: Check progress at defined intervals
126
+
127
+ **Time Elements to Include**:
128
+ - Target date or timeframe
129
+ - Checkpoint dates for progress review
130
+ - Frequency of actions (e.g., "exercise 30 min, 5x/week")
131
+
132
+ **Examples**:
133
+
134
+ | Not Time-Bound | Time-Bound |
135
+ |----------------|------------|
136
+ | "Eventually lose weight" | "Lose 15 pounds within 6 months (approximately 1-2 lbs/week)" |
137
+ | "Attend physical therapy" | "Complete 12 physical therapy sessions over 8 weeks, 1-2x weekly" |
138
+ | "When ready, return to work" | "Return to modified duty work within 12 weeks post-surgery" |
139
+ | "Improve depression symptoms" | "Reduce PHQ-9 score from 18 to <10 within 8 weeks of starting SSRI and CBT" |
140
+
141
+ ## Creating SMART Goals: Step-by-Step Process
142
+
143
+ ### Step 1: Assess Baseline
144
+ - Identify current status: symptoms, lab values, functional level
145
+ - Use standardized assessments when available
146
+ - Document quantitative baseline
147
+
148
+ ### Step 2: Identify Desired Outcome
149
+ - What needs to improve?
150
+ - Engage patient: "What would you like to be different?"
151
+ - Consider clinical needs and patient priorities
152
+
153
+ ### Step 3: Make It Specific
154
+ - Define exact outcome
155
+ - Eliminate vague language
156
+ - Include all relevant details
157
+
158
+ ### Step 4: Add Measurement
159
+ - How will progress be tracked?
160
+ - What metric or observable behavior?
161
+ - Baseline → Target value
162
+
163
+ ### Step 5: Reality Check (Achievable?)
164
+ - Is this possible given patient's condition, resources, treatment effects?
165
+ - May need to adjust expectations
166
+ - Set incremental goals if needed
167
+
168
+ ### Step 6: Ensure Relevance
169
+ - Does patient care about this goal?
170
+ - Is it clinically meaningful?
171
+ - Does it align with overall treatment plan?
172
+
173
+ ### Step 7: Set Timeline
174
+ - When will goal be achieved?
175
+ - When will progress be reviewed?
176
+ - Break into short-term and long-term if needed
177
+
178
+ ### Step 8: Document and Communicate
179
+ - Write goal in clear SMART format
180
+ - Share with patient and care team
181
+ - Ensure patient understanding
182
+
183
+ ## Goal Hierarchies and Levels
184
+
185
+ ### ICF Framework (International Classification of Functioning, Disability and Health)
186
+
187
+ Useful for rehabilitation and functional goals:
188
+
189
+ 1. **Impairment-Level Goals**: Body structure/function
190
+ - Example: "Increase shoulder flexion ROM from 90° to 140°"
191
+
192
+ 2. **Activity-Level Goals**: Task performance
193
+ - Example: "Dress upper body independently"
194
+
195
+ 3. **Participation-Level Goals**: Life role engagement
196
+ - Example: "Return to work as teacher"
197
+
198
+ ### Medical Outcome Levels
199
+
200
+ 1. **Biological/Clinical Goals**: Lab values, vital signs, disease markers
201
+ - Example: "HbA1c <7%, BP <130/80, LDL <70 mg/dL"
202
+
203
+ 2. **Symptom Goals**: Patient-reported symptoms
204
+ - Example: "Pain ≤4/10, no dyspnea with ADLs"
205
+
206
+ 3. **Functional Goals**: What patient can do
207
+ - Example: "Walk 1 mile, climb 2 flights of stairs"
208
+
209
+ 4. **Quality of Life Goals**: Overall well-being
210
+ - Example: "Return to hobbies, improve sleep quality"
211
+
212
+ ## Patient-Centered Outcome Measures (PCOMs)
213
+
214
+ ### Definition
215
+ Outcomes that matter most to patients, beyond traditional clinical metrics.
216
+
217
+ ### Common PCOMs
218
+
219
+ **Patient-Reported Outcome Measures (PROMs)**:
220
+ - SF-36 or SF-12 (general health-related quality of life)
221
+ - PROMIS (Patient-Reported Outcomes Measurement Information System)
222
+ - Disease-specific QoL scales (e.g., Kansas City Cardiomyopathy Questionnaire for HF)
223
+
224
+ **Functional Outcomes**:
225
+ - Activities of Daily Living (ADLs): Bathing, dressing, toileting, transferring, feeding, continence
226
+ - Instrumental ADLs (IADLs): Shopping, cooking, housekeeping, managing finances, transportation
227
+ - Occupational/educational functioning
228
+ - Social functioning and relationships
229
+ - Recreation and leisure participation
230
+
231
+ **Patient Priorities**:
232
+ - What matters most to individual patient
233
+ - May differ from clinician priorities
234
+ - Examples: "Play with grandchildren," "Travel to daughter's wedding," "Avoid nursing home"
235
+
236
+ ### Integrating PCOMs into Goals
237
+
238
+ **Approach**:
239
+ 1. Ask patient about priorities early in assessment
240
+ 2. Link clinical goals to patient-meaningful outcomes
241
+ 3. Include at least some goals directly addressing patient priorities
242
+ 4. Use patient's language in documenting goals when possible
243
+
244
+ **Example Integration**:
245
+ - **Clinical goal**: "Reduce HbA1c from 8.5% to <7% in 3 months"
246
+ - **Linked patient-centered goal**: "Improve energy levels to play with grandchildren without fatigue"
247
+ - Both goals documented, progress on both tracked
248
+
249
+ ## Shared Decision-Making in Goal Setting
250
+
251
+ ### What is Shared Decision-Making (SDM)?
252
+
253
+ Collaborative process where clinicians and patients jointly:
254
+ - Discuss treatment options
255
+ - Weigh risks and benefits
256
+ - Consider patient values and preferences
257
+ - Make decisions together
258
+
259
+ ### SDM in Treatment Goal Setting
260
+
261
+ **Steps**:
262
+
263
+ 1. **Choice Awareness**: Acknowledge multiple possible goals/approaches
264
+ - "We could focus on aggressive HbA1c lowering vs. minimizing hypoglycemia risk. What's more important to you?"
265
+
266
+ 2. **Option Presentation**: Present goal options with pros/cons
267
+ - "Option A: Intensive BP control (<120/80) reduces stroke risk but requires more medications. Option B: Standard control (<140/90) is easier but slightly higher stroke risk."
268
+
269
+ 3. **Values Clarification**: Understand patient priorities
270
+ - "How do you feel about taking multiple medications?" "How much does avoiding injections matter to you?"
271
+
272
+ 4. **Preference Integration**: Incorporate preferences into goals
273
+ - If patient prioritizes avoiding medications → "Control BP with lifestyle changes and one medication if possible"
274
+
275
+ 5. **Decision**: Agree on goals together
276
+ - "It sounds like you'd like to try intensive lifestyle changes for 3 months before adding another medication. Let's plan for that."
277
+
278
+ 6. **Document**: Record shared decision-making process
279
+ - "Goals established through shared decision-making. Patient expressed preference for..."
280
+
281
+ ### Decision Aids
282
+
283
+ Tools to facilitate SDM:
284
+ - Option grids comparing approaches
285
+ - Numerical risk/benefit data
286
+ - Patient stories/testimonials
287
+ - Visual aids (pictures, diagrams)
288
+ - "What matters to you" worksheets
289
+
290
+ ## Special Considerations for Different Populations
291
+
292
+ ### Older Adults
293
+ - Functional independence often priority over disease-specific metrics
294
+ - Balance aggressive treatment vs. treatment burden
295
+ - Consider life expectancy and time to benefit
296
+ - Fall prevention, polypharmacy reduction may be key goals
297
+ - Quality over quantity of life
298
+
299
+ ### Pediatric
300
+ - Developmental stage-appropriate goals
301
+ - Family-centered (involve parents/caregivers)
302
+ - Growth and development milestones
303
+ - School/social functioning
304
+ - Transition planning (pediatric to adult care)
305
+
306
+ ### Chronic Disease
307
+ - Long-term sustainable goals
308
+ - Balance ambition with realistic expectations
309
+ - Complication prevention
310
+ - Quality of life maintenance
311
+ - Adaptation and acceptance alongside improvement
312
+
313
+ ### Palliative/End-of-Life
314
+ - Comfort and symptom management primary
315
+ - Functional goals focused on valued activities
316
+ - Psychosocial and spiritual needs
317
+ - Caregiver support
318
+ - Dignity and autonomy
319
+
320
+ ### Complex Multi-Morbidity
321
+ - Prioritize most impactful goals
322
+ - Coordinate goals across conditions (when treatments overlap, even better)
323
+ - Avoid conflicting treatments
324
+ - Minimize treatment burden
325
+ - Realistic expectations with multiple conditions
326
+
327
+ ## Common Goal-Setting Pitfalls
328
+
329
+ ### Pitfall 1: Provider-Centric Goals
330
+ **Problem**: Goals reflect what provider thinks is important, not patient priorities
331
+ **Solution**: Ask patient early in visit what they hope to achieve, incorporate their language
332
+
333
+ ### Pitfall 2: Too Many Goals
334
+ **Problem**: Overwhelming patient with 10+ goals
335
+ **Solution**: Prioritize 3-5 key goals, build on success
336
+
337
+ ### Pitfall 3: All-or-Nothing Thinking
338
+ **Problem**: Goal is "cure" or "perfection"
339
+ **Solution**: Incremental goals, meaningful improvement valued
340
+
341
+ ### Pitfall 4: Ignoring Barriers
342
+ **Problem**: Goals set without assessing feasibility (resources, support, access)
343
+ **Solution**: Identify barriers during assessment, problem-solve or adjust goals
344
+
345
+ ### Pitfall 5: Static Goals
346
+ **Problem**: Set goals and never revisit
347
+ **Solution**: Regular reassessment, modify as patient progresses or circumstances change
348
+
349
+ ### Pitfall 6: Purely Clinical Metrics
350
+ **Problem**: All goals are lab values, no functional or QoL goals
351
+ **Solution**: Balance clinical markers with functional, symptom, and QoL outcomes
352
+
353
+ ### Pitfall 7: No Patient Buy-In
354
+ **Problem**: Patient doesn't believe goal is achievable or important
355
+ **Solution**: Shared decision-making, motivational interviewing to explore ambivalence
356
+
357
+ ## Examples of SMART Goals by Condition
358
+
359
+ ### Diabetes
360
+ **Short-term**: "Reduce HbA1c from 8.5% to <7.5% within 3 months by initiating metformin 1000mg BID and reducing carbohydrate intake to 45-60g per meal."
361
+
362
+ **Long-term**: "Maintain HbA1c <7% for 6+ months, prevent microvascular complications, and improve energy levels to engage in daily walking for 30 minutes."
363
+
364
+ ### Heart Failure
365
+ **Short-term**: "Achieve euvolemia (no edema, stable weight within 2 lbs) within 2 weeks through furosemide dose optimization and sodium restriction <2000mg/day."
366
+
367
+ **Long-term**: "Maintain NYHA Class II functional status, prevent HF hospitalizations, and walk 1/4 mile without dyspnea within 3 months."
368
+
369
+ ### Depression
370
+ **Short-term**: "Reduce PHQ-9 score from 18 to <10 within 8 weeks by starting escitalopram 10mg daily and attending weekly CBT sessions."
371
+
372
+ **Long-term**: "Achieve depression remission (PHQ-9 <5), return to work full-time, and re-engage in social activities with friends 2-3x/week within 4 months."
373
+
374
+ ### Post-Stroke Rehabilitation
375
+ **Short-term**: "Increase right arm strength from 2/5 to 3+/5 and improve Functional Independence Measure (FIM) score from 85 to 100 within 4 weeks through PT/OT 5x/week."
376
+
377
+ **Long-term**: "Achieve independence in all ADLs, ambulate 500 feet with cane on level surfaces, and return home (not nursing facility) within 3 months."
378
+
379
+ ### Chronic Low Back Pain
380
+ **Short-term**: "Reduce pain intensity from 7/10 to 4/10 and increase walking tolerance from 10 minutes to 30 minutes within 6 weeks using multimodal analgesia (SNRI, NSAID, PT)."
381
+
382
+ **Long-term**: "Return to modified duty work within 3 months, engage in hobbies (fishing, gardening with adaptations), and reduce pain interference on daily life by 50% (Brief Pain Inventory)."
383
+
384
+ ### Hypertension
385
+ **Short-term**: "Reduce blood pressure from 152/94 to <140/90 mmHg within 4 weeks by initiating lisinopril 10mg daily and reducing sodium intake to <2300mg/day."
386
+
387
+ **Long-term**: "Achieve and maintain BP <130/80 mmHg, reduce ASCVD 10-year risk from 15% to <10%, and prevent cardiovascular events."
388
+
389
+ ## Tools and Resources
390
+
391
+ ### Goal-Setting Templates
392
+ - SMART goal worksheet (fill-in-the-blank format)
393
+ - Goal-tracking sheets for patients
394
+ - Motivational interviewing "change talk" to elicit goals
395
+
396
+ ### Assessment Tools
397
+ - Goal Attainment Scaling (GAS): Personalized outcome measure
398
+ - Canadian Occupational Performance Measure (COPM): Patient-identified functional goals
399
+ - Patient-Reported Outcomes Measurement Information System (PROMIS)
400
+
401
+ ### Patient Education
402
+ - "Setting Health Goals" handouts
403
+ - Goal visualization exercises
404
+ - Tracking apps and logs
405
+
406
+ ---
407
+
408
+ **Document Version**: 1.0
409
+ **Last Updated**: January 2025
410
+ **Next Review**: January 2026
411
+