scientific-writer 2.2.1__py3-none-any.whl → 2.2.3__py3-none-any.whl

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  1. scientific_writer/.claude/WRITER.md +748 -0
  2. scientific_writer/.claude/settings.local.json +30 -0
  3. scientific_writer/.claude/skills/citation-management/SKILL.md +1046 -0
  4. scientific_writer/.claude/skills/citation-management/assets/bibtex_template.bib +264 -0
  5. scientific_writer/.claude/skills/citation-management/assets/citation_checklist.md +386 -0
  6. scientific_writer/.claude/skills/citation-management/references/bibtex_formatting.md +908 -0
  7. scientific_writer/.claude/skills/citation-management/references/citation_validation.md +794 -0
  8. scientific_writer/.claude/skills/citation-management/references/google_scholar_search.md +725 -0
  9. scientific_writer/.claude/skills/citation-management/references/metadata_extraction.md +870 -0
  10. scientific_writer/.claude/skills/citation-management/references/pubmed_search.md +839 -0
  11. scientific_writer/.claude/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
  12. scientific_writer/.claude/skills/citation-management/scripts/extract_metadata.py +569 -0
  13. scientific_writer/.claude/skills/citation-management/scripts/format_bibtex.py +349 -0
  14. scientific_writer/.claude/skills/citation-management/scripts/search_google_scholar.py +282 -0
  15. scientific_writer/.claude/skills/citation-management/scripts/search_pubmed.py +398 -0
  16. scientific_writer/.claude/skills/citation-management/scripts/validate_citations.py +497 -0
  17. scientific_writer/.claude/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
  18. scientific_writer/.claude/skills/clinical-reports/README.md +236 -0
  19. scientific_writer/.claude/skills/clinical-reports/SKILL.md +1088 -0
  20. scientific_writer/.claude/skills/clinical-reports/assets/case_report_template.md +352 -0
  21. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
  22. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
  23. scientific_writer/.claude/skills/clinical-reports/assets/consult_note_template.md +305 -0
  24. scientific_writer/.claude/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
  25. scientific_writer/.claude/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
  26. scientific_writer/.claude/skills/clinical-reports/assets/history_physical_template.md +305 -0
  27. scientific_writer/.claude/skills/clinical-reports/assets/lab_report_template.md +309 -0
  28. scientific_writer/.claude/skills/clinical-reports/assets/pathology_report_template.md +249 -0
  29. scientific_writer/.claude/skills/clinical-reports/assets/quality_checklist.md +338 -0
  30. scientific_writer/.claude/skills/clinical-reports/assets/radiology_report_template.md +318 -0
  31. scientific_writer/.claude/skills/clinical-reports/assets/soap_note_template.md +253 -0
  32. scientific_writer/.claude/skills/clinical-reports/references/case_report_guidelines.md +570 -0
  33. scientific_writer/.claude/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
  34. scientific_writer/.claude/skills/clinical-reports/references/data_presentation.md +530 -0
  35. scientific_writer/.claude/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
  36. scientific_writer/.claude/skills/clinical-reports/references/medical_terminology.md +588 -0
  37. scientific_writer/.claude/skills/clinical-reports/references/patient_documentation.md +744 -0
  38. scientific_writer/.claude/skills/clinical-reports/references/peer_review_standards.md +585 -0
  39. scientific_writer/.claude/skills/clinical-reports/references/regulatory_compliance.md +577 -0
  40. scientific_writer/.claude/skills/clinical-reports/scripts/check_deidentification.py +346 -0
  41. scientific_writer/.claude/skills/clinical-reports/scripts/compliance_checker.py +78 -0
  42. scientific_writer/.claude/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
  43. scientific_writer/.claude/skills/clinical-reports/scripts/format_adverse_events.py +103 -0
  44. scientific_writer/.claude/skills/clinical-reports/scripts/generate_report_template.py +163 -0
  45. scientific_writer/.claude/skills/clinical-reports/scripts/terminology_validator.py +133 -0
  46. scientific_writer/.claude/skills/clinical-reports/scripts/validate_case_report.py +334 -0
  47. scientific_writer/.claude/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
  48. scientific_writer/.claude/skills/document-skills/docx/LICENSE.txt +30 -0
  49. scientific_writer/.claude/skills/document-skills/docx/SKILL.md +197 -0
  50. scientific_writer/.claude/skills/document-skills/docx/docx-js.md +350 -0
  51. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  52. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  53. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  54. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  55. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  56. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  57. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  58. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  59. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  60. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  61. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  62. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  63. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  64. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  65. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  66. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  67. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  68. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  69. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  70. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  71. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  72. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  73. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  74. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  75. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  76. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  77. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  78. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  79. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  80. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  81. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  82. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
  83. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  84. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  85. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  86. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  87. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  88. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  89. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  90. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
  91. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
  92. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
  93. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
  94. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
  95. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
  96. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
  97. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
  98. scientific_writer/.claude/skills/document-skills/docx/ooxml.md +610 -0
  99. scientific_writer/.claude/skills/document-skills/docx/scripts/__init__.py +1 -0
  100. scientific_writer/.claude/skills/document-skills/docx/scripts/document.py +1276 -0
  101. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
  102. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
  103. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
  104. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
  105. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/people.xml +3 -0
  106. scientific_writer/.claude/skills/document-skills/docx/scripts/utilities.py +374 -0
  107. scientific_writer/.claude/skills/document-skills/pdf/LICENSE.txt +30 -0
  108. scientific_writer/.claude/skills/document-skills/pdf/SKILL.md +294 -0
  109. scientific_writer/.claude/skills/document-skills/pdf/forms.md +205 -0
  110. scientific_writer/.claude/skills/document-skills/pdf/reference.md +612 -0
  111. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
  112. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
  113. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
  114. scientific_writer/.claude/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
  115. scientific_writer/.claude/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
  116. scientific_writer/.claude/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
  117. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
  118. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
  119. scientific_writer/.claude/skills/document-skills/pptx/LICENSE.txt +30 -0
  120. scientific_writer/.claude/skills/document-skills/pptx/SKILL.md +484 -0
  121. scientific_writer/.claude/skills/document-skills/pptx/html2pptx.md +625 -0
  122. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  123. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  124. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  125. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  126. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  127. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  128. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  129. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  130. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  131. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  132. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  133. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  134. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  135. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  136. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  137. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  138. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  139. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  140. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  141. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  142. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  143. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  144. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  145. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  146. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  147. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  148. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  149. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  150. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  151. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  152. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  153. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
  154. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  155. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  156. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  157. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  158. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  159. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  160. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  161. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/pack.py +159 -0
  162. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/unpack.py +29 -0
  163. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validate.py +69 -0
  164. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +15 -0
  165. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/base.py +951 -0
  166. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +274 -0
  167. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +315 -0
  168. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +279 -0
  169. scientific_writer/.claude/skills/document-skills/pptx/ooxml.md +427 -0
  170. scientific_writer/.claude/skills/document-skills/pptx/scripts/html2pptx.js +979 -0
  171. scientific_writer/.claude/skills/document-skills/pptx/scripts/inventory.py +1020 -0
  172. scientific_writer/.claude/skills/document-skills/pptx/scripts/rearrange.py +231 -0
  173. scientific_writer/.claude/skills/document-skills/pptx/scripts/replace.py +385 -0
  174. scientific_writer/.claude/skills/document-skills/pptx/scripts/thumbnail.py +450 -0
  175. scientific_writer/.claude/skills/document-skills/xlsx/LICENSE.txt +30 -0
  176. scientific_writer/.claude/skills/document-skills/xlsx/SKILL.md +289 -0
  177. scientific_writer/.claude/skills/document-skills/xlsx/recalc.py +178 -0
  178. scientific_writer/.claude/skills/hypothesis-generation/SKILL.md +155 -0
  179. scientific_writer/.claude/skills/hypothesis-generation/assets/hypothesis_output_template.md +302 -0
  180. scientific_writer/.claude/skills/hypothesis-generation/references/experimental_design_patterns.md +327 -0
  181. scientific_writer/.claude/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +196 -0
  182. scientific_writer/.claude/skills/hypothesis-generation/references/literature_search_strategies.md +505 -0
  183. scientific_writer/.claude/skills/latex-posters/README.md +417 -0
  184. scientific_writer/.claude/skills/latex-posters/SKILL.md +919 -0
  185. scientific_writer/.claude/skills/latex-posters/assets/baposter_template.tex +257 -0
  186. scientific_writer/.claude/skills/latex-posters/assets/beamerposter_template.tex +244 -0
  187. scientific_writer/.claude/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
  188. scientific_writer/.claude/skills/latex-posters/assets/tikzposter_template.tex +251 -0
  189. scientific_writer/.claude/skills/latex-posters/references/latex_poster_packages.md +745 -0
  190. scientific_writer/.claude/skills/latex-posters/references/poster_content_guide.md +748 -0
  191. scientific_writer/.claude/skills/latex-posters/references/poster_design_principles.md +806 -0
  192. scientific_writer/.claude/skills/latex-posters/references/poster_layout_design.md +900 -0
  193. scientific_writer/.claude/skills/latex-posters/scripts/review_poster.sh +214 -0
  194. scientific_writer/.claude/skills/literature-review/SKILL.md +546 -0
  195. scientific_writer/.claude/skills/literature-review/assets/review_template.md +412 -0
  196. scientific_writer/.claude/skills/literature-review/references/citation_styles.md +166 -0
  197. scientific_writer/.claude/skills/literature-review/references/database_strategies.md +381 -0
  198. scientific_writer/.claude/skills/literature-review/scripts/generate_pdf.py +176 -0
  199. scientific_writer/.claude/skills/literature-review/scripts/search_databases.py +303 -0
  200. scientific_writer/.claude/skills/literature-review/scripts/verify_citations.py +222 -0
  201. scientific_writer/.claude/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
  202. scientific_writer/.claude/skills/markitdown/LICENSE.txt +22 -0
  203. scientific_writer/.claude/skills/markitdown/OPENROUTER_INTEGRATION.md +359 -0
  204. scientific_writer/.claude/skills/markitdown/QUICK_REFERENCE.md +309 -0
  205. scientific_writer/.claude/skills/markitdown/README.md +184 -0
  206. scientific_writer/.claude/skills/markitdown/SKILL.md +450 -0
  207. scientific_writer/.claude/skills/markitdown/SKILL_SUMMARY.md +307 -0
  208. scientific_writer/.claude/skills/markitdown/assets/example_usage.md +463 -0
  209. scientific_writer/.claude/skills/markitdown/references/api_reference.md +399 -0
  210. scientific_writer/.claude/skills/markitdown/references/file_formats.md +542 -0
  211. scientific_writer/.claude/skills/markitdown/scripts/batch_convert.py +228 -0
  212. scientific_writer/.claude/skills/markitdown/scripts/convert_literature.py +283 -0
  213. scientific_writer/.claude/skills/markitdown/scripts/convert_with_ai.py +243 -0
  214. scientific_writer/.claude/skills/paper-2-web/SKILL.md +455 -0
  215. scientific_writer/.claude/skills/paper-2-web/references/installation.md +141 -0
  216. scientific_writer/.claude/skills/paper-2-web/references/paper2poster.md +346 -0
  217. scientific_writer/.claude/skills/paper-2-web/references/paper2video.md +305 -0
  218. scientific_writer/.claude/skills/paper-2-web/references/paper2web.md +187 -0
  219. scientific_writer/.claude/skills/paper-2-web/references/usage_examples.md +436 -0
  220. scientific_writer/.claude/skills/peer-review/SKILL.md +375 -0
  221. scientific_writer/.claude/skills/peer-review/references/common_issues.md +552 -0
  222. scientific_writer/.claude/skills/peer-review/references/reporting_standards.md +290 -0
  223. scientific_writer/.claude/skills/research-grants/README.md +285 -0
  224. scientific_writer/.claude/skills/research-grants/SKILL.md +896 -0
  225. scientific_writer/.claude/skills/research-grants/assets/budget_justification_template.md +453 -0
  226. scientific_writer/.claude/skills/research-grants/assets/nih_specific_aims_template.md +166 -0
  227. scientific_writer/.claude/skills/research-grants/assets/nsf_project_summary_template.md +92 -0
  228. scientific_writer/.claude/skills/research-grants/references/broader_impacts.md +392 -0
  229. scientific_writer/.claude/skills/research-grants/references/darpa_guidelines.md +636 -0
  230. scientific_writer/.claude/skills/research-grants/references/doe_guidelines.md +586 -0
  231. scientific_writer/.claude/skills/research-grants/references/nih_guidelines.md +851 -0
  232. scientific_writer/.claude/skills/research-grants/references/nsf_guidelines.md +570 -0
  233. scientific_writer/.claude/skills/research-grants/references/specific_aims_guide.md +458 -0
  234. scientific_writer/.claude/skills/research-lookup/README.md +116 -0
  235. scientific_writer/.claude/skills/research-lookup/SKILL.md +443 -0
  236. scientific_writer/.claude/skills/research-lookup/examples.py +174 -0
  237. scientific_writer/.claude/skills/research-lookup/lookup.py +93 -0
  238. scientific_writer/.claude/skills/research-lookup/research_lookup.py +335 -0
  239. scientific_writer/.claude/skills/research-lookup/scripts/research_lookup.py +261 -0
  240. scientific_writer/.claude/skills/scholar-evaluation/SKILL.md +254 -0
  241. scientific_writer/.claude/skills/scholar-evaluation/references/evaluation_framework.md +663 -0
  242. scientific_writer/.claude/skills/scholar-evaluation/scripts/calculate_scores.py +378 -0
  243. scientific_writer/.claude/skills/scientific-critical-thinking/SKILL.md +530 -0
  244. scientific_writer/.claude/skills/scientific-critical-thinking/references/common_biases.md +364 -0
  245. scientific_writer/.claude/skills/scientific-critical-thinking/references/evidence_hierarchy.md +484 -0
  246. scientific_writer/.claude/skills/scientific-critical-thinking/references/experimental_design.md +496 -0
  247. scientific_writer/.claude/skills/scientific-critical-thinking/references/logical_fallacies.md +478 -0
  248. scientific_writer/.claude/skills/scientific-critical-thinking/references/scientific_method.md +169 -0
  249. scientific_writer/.claude/skills/scientific-critical-thinking/references/statistical_pitfalls.md +506 -0
  250. scientific_writer/.claude/skills/scientific-schematics/SKILL.md +2035 -0
  251. scientific_writer/.claude/skills/scientific-schematics/assets/block_diagram_template.tex +199 -0
  252. scientific_writer/.claude/skills/scientific-schematics/assets/circuit_template.tex +159 -0
  253. scientific_writer/.claude/skills/scientific-schematics/assets/flowchart_template.tex +161 -0
  254. scientific_writer/.claude/skills/scientific-schematics/assets/pathway_template.tex +162 -0
  255. scientific_writer/.claude/skills/scientific-schematics/assets/tikz_styles.tex +422 -0
  256. scientific_writer/.claude/skills/scientific-schematics/references/best_practices.md +562 -0
  257. scientific_writer/.claude/skills/scientific-schematics/references/diagram_types.md +637 -0
  258. scientific_writer/.claude/skills/scientific-schematics/references/python_libraries.md +791 -0
  259. scientific_writer/.claude/skills/scientific-schematics/references/tikz_guide.md +734 -0
  260. scientific_writer/.claude/skills/scientific-schematics/scripts/circuit_generator.py +307 -0
  261. scientific_writer/.claude/skills/scientific-schematics/scripts/compile_tikz.py +292 -0
  262. scientific_writer/.claude/skills/scientific-schematics/scripts/generate_flowchart.py +281 -0
  263. scientific_writer/.claude/skills/scientific-schematics/scripts/pathway_diagram.py +406 -0
  264. scientific_writer/.claude/skills/scientific-writing/SKILL.md +443 -0
  265. scientific_writer/.claude/skills/scientific-writing/references/citation_styles.md +720 -0
  266. scientific_writer/.claude/skills/scientific-writing/references/figures_tables.md +806 -0
  267. scientific_writer/.claude/skills/scientific-writing/references/imrad_structure.md +658 -0
  268. scientific_writer/.claude/skills/scientific-writing/references/reporting_guidelines.md +748 -0
  269. scientific_writer/.claude/skills/scientific-writing/references/writing_principles.md +824 -0
  270. scientific_writer/.claude/skills/treatment-plans/README.md +483 -0
  271. scientific_writer/.claude/skills/treatment-plans/SKILL.md +817 -0
  272. scientific_writer/.claude/skills/treatment-plans/assets/chronic_disease_management_plan.tex +636 -0
  273. scientific_writer/.claude/skills/treatment-plans/assets/general_medical_treatment_plan.tex +616 -0
  274. scientific_writer/.claude/skills/treatment-plans/assets/mental_health_treatment_plan.tex +745 -0
  275. scientific_writer/.claude/skills/treatment-plans/assets/pain_management_plan.tex +770 -0
  276. scientific_writer/.claude/skills/treatment-plans/assets/perioperative_care_plan.tex +724 -0
  277. scientific_writer/.claude/skills/treatment-plans/assets/quality_checklist.md +471 -0
  278. scientific_writer/.claude/skills/treatment-plans/assets/rehabilitation_treatment_plan.tex +727 -0
  279. scientific_writer/.claude/skills/treatment-plans/references/goal_setting_frameworks.md +411 -0
  280. scientific_writer/.claude/skills/treatment-plans/references/intervention_guidelines.md +507 -0
  281. scientific_writer/.claude/skills/treatment-plans/references/regulatory_compliance.md +476 -0
  282. scientific_writer/.claude/skills/treatment-plans/references/specialty_specific_guidelines.md +607 -0
  283. scientific_writer/.claude/skills/treatment-plans/references/treatment_plan_standards.md +456 -0
  284. scientific_writer/.claude/skills/treatment-plans/scripts/check_completeness.py +318 -0
  285. scientific_writer/.claude/skills/treatment-plans/scripts/generate_template.py +244 -0
  286. scientific_writer/.claude/skills/treatment-plans/scripts/timeline_generator.py +369 -0
  287. scientific_writer/.claude/skills/treatment-plans/scripts/validate_treatment_plan.py +367 -0
  288. scientific_writer/.claude/skills/venue-templates/SKILL.md +590 -0
  289. scientific_writer/.claude/skills/venue-templates/assets/grants/nih_specific_aims.tex +235 -0
  290. scientific_writer/.claude/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
  291. scientific_writer/.claude/skills/venue-templates/assets/journals/nature_article.tex +171 -0
  292. scientific_writer/.claude/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
  293. scientific_writer/.claude/skills/venue-templates/assets/journals/plos_one.tex +317 -0
  294. scientific_writer/.claude/skills/venue-templates/assets/posters/beamerposter_academic.tex +311 -0
  295. scientific_writer/.claude/skills/venue-templates/references/conferences_formatting.md +564 -0
  296. scientific_writer/.claude/skills/venue-templates/references/grants_requirements.md +787 -0
  297. scientific_writer/.claude/skills/venue-templates/references/journals_formatting.md +486 -0
  298. scientific_writer/.claude/skills/venue-templates/references/posters_guidelines.md +628 -0
  299. scientific_writer/.claude/skills/venue-templates/scripts/customize_template.py +206 -0
  300. scientific_writer/.claude/skills/venue-templates/scripts/query_template.py +260 -0
  301. scientific_writer/.claude/skills/venue-templates/scripts/validate_format.py +255 -0
  302. scientific_writer/__init__.py +1 -1
  303. scientific_writer/api.py +9 -5
  304. scientific_writer/cli.py +9 -5
  305. scientific_writer/core.py +28 -5
  306. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/METADATA +1 -1
  307. scientific_writer-2.2.3.dist-info/RECORD +312 -0
  308. scientific_writer-2.2.1.dist-info/RECORD +0 -11
  309. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/WHEEL +0 -0
  310. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/entry_points.txt +0 -0
  311. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/licenses/LICENSE +0 -0
scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd ADDED
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
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+ xmlns="http://schemas.openxmlformats.org/officeDocument/2006/math"
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+ xmlns:m="http://schemas.openxmlformats.org/officeDocument/2006/math"
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+ xmlns:s="http://schemas.openxmlformats.org/officeDocument/2006/sharedTypes"
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+ elementFormDefault="qualified" attributeFormDefault="qualified" blockDefault="#all"
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+ targetNamespace="http://schemas.openxmlformats.org/officeDocument/2006/math">
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+ <xsd:import namespace="http://schemas.openxmlformats.org/wordprocessingml/2006/main"
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+ schemaLocation="wml.xsd"/>
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+ <xsd:import namespace="http://schemas.openxmlformats.org/officeDocument/2006/sharedTypes"
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+ <xsd:complexType name="CT_Integer255">
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+ <xsd:simpleType name="ST_Integer2">
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+ <xsd:maxInclusive value="2"/>
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+ </xsd:restriction>
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+ </xsd:simpleType>
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+ <xsd:complexType name="CT_Integer2">
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+ <xsd:attribute name="val" type="ST_Integer2" use="required"/>
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+ <xsd:simpleType name="ST_SpacingRule">
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+ <xsd:simpleType name="ST_UnSignedInteger">
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+ <xsd:restriction base="xsd:unsignedInt"/>
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+ <xsd:attribute name="val" type="s:ST_XAlign" use="required"/>
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+ <xsd:element name="aln" minOccurs="0" type="CT_OnOff"/>
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+ <xsd:complexType name="CT_Text">
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+ <xsd:group ref="w:EG_RPr" minOccurs="0"/>
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+ <xsd:choice minOccurs="0" maxOccurs="unbounded">
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+ <xsd:group ref="w:EG_RunInnerContent"/>
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+ <xsd:element name="t" type="CT_Text" minOccurs="0"/>
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206
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+ <xsd:element name="hideTop" type="CT_OnOff" minOccurs="0"/>
216
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+ <xsd:element name="hideLeft" type="CT_OnOff" minOccurs="0"/>
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225
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229
+ <xsd:element name="e" type="CT_OMathArg"/>
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+ <xsd:complexType name="CT_DPr">
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+ <xsd:element name="begChr" type="CT_Char" minOccurs="0"/>
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+ <xsd:element name="sepChr" type="CT_Char" minOccurs="0"/>
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+ <xsd:complexType name="CT_D">
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+ <xsd:element name="e" type="CT_OMathArg" maxOccurs="unbounded"/>
246
+ </xsd:sequence>
247
+ </xsd:complexType>
248
+ <xsd:complexType name="CT_EqArrPr">
249
+ <xsd:sequence>
250
+ <xsd:element name="baseJc" type="CT_YAlign" minOccurs="0"/>
251
+ <xsd:element name="maxDist" type="CT_OnOff" minOccurs="0"/>
252
+ <xsd:element name="objDist" type="CT_OnOff" minOccurs="0"/>
253
+ <xsd:element name="rSpRule" type="CT_SpacingRule" minOccurs="0"/>
254
+ <xsd:element name="rSp" type="CT_UnSignedInteger" minOccurs="0"/>
255
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
256
+ </xsd:sequence>
257
+ </xsd:complexType>
258
+ <xsd:complexType name="CT_EqArr">
259
+ <xsd:sequence>
260
+ <xsd:element name="eqArrPr" type="CT_EqArrPr" minOccurs="0"/>
261
+ <xsd:element name="e" type="CT_OMathArg" maxOccurs="unbounded"/>
262
+ </xsd:sequence>
263
+ </xsd:complexType>
264
+ <xsd:complexType name="CT_FPr">
265
+ <xsd:sequence>
266
+ <xsd:element name="type" type="CT_FType" minOccurs="0"/>
267
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
268
+ </xsd:sequence>
269
+ </xsd:complexType>
270
+ <xsd:complexType name="CT_F">
271
+ <xsd:sequence>
272
+ <xsd:element name="fPr" type="CT_FPr" minOccurs="0"/>
273
+ <xsd:element name="num" type="CT_OMathArg"/>
274
+ <xsd:element name="den" type="CT_OMathArg"/>
275
+ </xsd:sequence>
276
+ </xsd:complexType>
277
+ <xsd:complexType name="CT_FuncPr">
278
+ <xsd:sequence>
279
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
280
+ </xsd:sequence>
281
+ </xsd:complexType>
282
+ <xsd:complexType name="CT_Func">
283
+ <xsd:sequence>
284
+ <xsd:element name="funcPr" type="CT_FuncPr" minOccurs="0"/>
285
+ <xsd:element name="fName" type="CT_OMathArg"/>
286
+ <xsd:element name="e" type="CT_OMathArg"/>
287
+ </xsd:sequence>
288
+ </xsd:complexType>
289
+ <xsd:complexType name="CT_GroupChrPr">
290
+ <xsd:sequence>
291
+ <xsd:element name="chr" type="CT_Char" minOccurs="0"/>
292
+ <xsd:element name="pos" type="CT_TopBot" minOccurs="0"/>
293
+ <xsd:element name="vertJc" type="CT_TopBot" minOccurs="0"/>
294
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
295
+ </xsd:sequence>
296
+ </xsd:complexType>
297
+ <xsd:complexType name="CT_GroupChr">
298
+ <xsd:sequence>
299
+ <xsd:element name="groupChrPr" type="CT_GroupChrPr" minOccurs="0"/>
300
+ <xsd:element name="e" type="CT_OMathArg"/>
301
+ </xsd:sequence>
302
+ </xsd:complexType>
303
+ <xsd:complexType name="CT_LimLowPr">
304
+ <xsd:sequence>
305
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
306
+ </xsd:sequence>
307
+ </xsd:complexType>
308
+ <xsd:complexType name="CT_LimLow">
309
+ <xsd:sequence>
310
+ <xsd:element name="limLowPr" type="CT_LimLowPr" minOccurs="0"/>
311
+ <xsd:element name="e" type="CT_OMathArg"/>
312
+ <xsd:element name="lim" type="CT_OMathArg"/>
313
+ </xsd:sequence>
314
+ </xsd:complexType>
315
+ <xsd:complexType name="CT_LimUppPr">
316
+ <xsd:sequence>
317
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
318
+ </xsd:sequence>
319
+ </xsd:complexType>
320
+ <xsd:complexType name="CT_LimUpp">
321
+ <xsd:sequence>
322
+ <xsd:element name="limUppPr" type="CT_LimUppPr" minOccurs="0"/>
323
+ <xsd:element name="e" type="CT_OMathArg"/>
324
+ <xsd:element name="lim" type="CT_OMathArg"/>
325
+ </xsd:sequence>
326
+ </xsd:complexType>
327
+ <xsd:complexType name="CT_MCPr">
328
+ <xsd:sequence>
329
+ <xsd:element name="count" type="CT_Integer255" minOccurs="0"/>
330
+ <xsd:element name="mcJc" type="CT_XAlign" minOccurs="0"/>
331
+ </xsd:sequence>
332
+ </xsd:complexType>
333
+ <xsd:complexType name="CT_MC">
334
+ <xsd:sequence>
335
+ <xsd:element name="mcPr" type="CT_MCPr" minOccurs="0"/>
336
+ </xsd:sequence>
337
+ </xsd:complexType>
338
+ <xsd:complexType name="CT_MCS">
339
+ <xsd:sequence>
340
+ <xsd:element name="mc" type="CT_MC" maxOccurs="unbounded"/>
341
+ </xsd:sequence>
342
+ </xsd:complexType>
343
+ <xsd:complexType name="CT_MPr">
344
+ <xsd:sequence>
345
+ <xsd:element name="baseJc" type="CT_YAlign" minOccurs="0"/>
346
+ <xsd:element name="plcHide" type="CT_OnOff" minOccurs="0"/>
347
+ <xsd:element name="rSpRule" type="CT_SpacingRule" minOccurs="0"/>
348
+ <xsd:element name="cGpRule" type="CT_SpacingRule" minOccurs="0"/>
349
+ <xsd:element name="rSp" type="CT_UnSignedInteger" minOccurs="0"/>
350
+ <xsd:element name="cSp" type="CT_UnSignedInteger" minOccurs="0"/>
351
+ <xsd:element name="cGp" type="CT_UnSignedInteger" minOccurs="0"/>
352
+ <xsd:element name="mcs" type="CT_MCS" minOccurs="0"/>
353
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
354
+ </xsd:sequence>
355
+ </xsd:complexType>
356
+ <xsd:complexType name="CT_MR">
357
+ <xsd:sequence>
358
+ <xsd:element name="e" type="CT_OMathArg" maxOccurs="unbounded"/>
359
+ </xsd:sequence>
360
+ </xsd:complexType>
361
+ <xsd:complexType name="CT_M">
362
+ <xsd:sequence>
363
+ <xsd:element name="mPr" type="CT_MPr" minOccurs="0"/>
364
+ <xsd:element name="mr" type="CT_MR" maxOccurs="unbounded"/>
365
+ </xsd:sequence>
366
+ </xsd:complexType>
367
+ <xsd:complexType name="CT_NaryPr">
368
+ <xsd:sequence>
369
+ <xsd:element name="chr" type="CT_Char" minOccurs="0"/>
370
+ <xsd:element name="limLoc" type="CT_LimLoc" minOccurs="0"/>
371
+ <xsd:element name="grow" type="CT_OnOff" minOccurs="0"/>
372
+ <xsd:element name="subHide" type="CT_OnOff" minOccurs="0"/>
373
+ <xsd:element name="supHide" type="CT_OnOff" minOccurs="0"/>
374
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
375
+ </xsd:sequence>
376
+ </xsd:complexType>
377
+ <xsd:complexType name="CT_Nary">
378
+ <xsd:sequence>
379
+ <xsd:element name="naryPr" type="CT_NaryPr" minOccurs="0"/>
380
+ <xsd:element name="sub" type="CT_OMathArg"/>
381
+ <xsd:element name="sup" type="CT_OMathArg"/>
382
+ <xsd:element name="e" type="CT_OMathArg"/>
383
+ </xsd:sequence>
384
+ </xsd:complexType>
385
+ <xsd:complexType name="CT_PhantPr">
386
+ <xsd:sequence>
387
+ <xsd:element name="show" type="CT_OnOff" minOccurs="0"/>
388
+ <xsd:element name="zeroWid" type="CT_OnOff" minOccurs="0"/>
389
+ <xsd:element name="zeroAsc" type="CT_OnOff" minOccurs="0"/>
390
+ <xsd:element name="zeroDesc" type="CT_OnOff" minOccurs="0"/>
391
+ <xsd:element name="transp" type="CT_OnOff" minOccurs="0"/>
392
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
393
+ </xsd:sequence>
394
+ </xsd:complexType>
395
+ <xsd:complexType name="CT_Phant">
396
+ <xsd:sequence>
397
+ <xsd:element name="phantPr" type="CT_PhantPr" minOccurs="0"/>
398
+ <xsd:element name="e" type="CT_OMathArg"/>
399
+ </xsd:sequence>
400
+ </xsd:complexType>
401
+ <xsd:complexType name="CT_RadPr">
402
+ <xsd:sequence>
403
+ <xsd:element name="degHide" type="CT_OnOff" minOccurs="0"/>
404
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
405
+ </xsd:sequence>
406
+ </xsd:complexType>
407
+ <xsd:complexType name="CT_Rad">
408
+ <xsd:sequence>
409
+ <xsd:element name="radPr" type="CT_RadPr" minOccurs="0"/>
410
+ <xsd:element name="deg" type="CT_OMathArg"/>
411
+ <xsd:element name="e" type="CT_OMathArg"/>
412
+ </xsd:sequence>
413
+ </xsd:complexType>
414
+ <xsd:complexType name="CT_SPrePr">
415
+ <xsd:sequence>
416
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
417
+ </xsd:sequence>
418
+ </xsd:complexType>
419
+ <xsd:complexType name="CT_SPre">
420
+ <xsd:sequence>
421
+ <xsd:element name="sPrePr" type="CT_SPrePr" minOccurs="0"/>
422
+ <xsd:element name="sub" type="CT_OMathArg"/>
423
+ <xsd:element name="sup" type="CT_OMathArg"/>
424
+ <xsd:element name="e" type="CT_OMathArg"/>
425
+ </xsd:sequence>
426
+ </xsd:complexType>
427
+ <xsd:complexType name="CT_SSubPr">
428
+ <xsd:sequence>
429
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
430
+ </xsd:sequence>
431
+ </xsd:complexType>
432
+ <xsd:complexType name="CT_SSub">
433
+ <xsd:sequence>
434
+ <xsd:element name="sSubPr" type="CT_SSubPr" minOccurs="0"/>
435
+ <xsd:element name="e" type="CT_OMathArg"/>
436
+ <xsd:element name="sub" type="CT_OMathArg"/>
437
+ </xsd:sequence>
438
+ </xsd:complexType>
439
+ <xsd:complexType name="CT_SSubSupPr">
440
+ <xsd:sequence>
441
+ <xsd:element name="alnScr" type="CT_OnOff" minOccurs="0"/>
442
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
443
+ </xsd:sequence>
444
+ </xsd:complexType>
445
+ <xsd:complexType name="CT_SSubSup">
446
+ <xsd:sequence>
447
+ <xsd:element name="sSubSupPr" type="CT_SSubSupPr" minOccurs="0"/>
448
+ <xsd:element name="e" type="CT_OMathArg"/>
449
+ <xsd:element name="sub" type="CT_OMathArg"/>
450
+ <xsd:element name="sup" type="CT_OMathArg"/>
451
+ </xsd:sequence>
452
+ </xsd:complexType>
453
+ <xsd:complexType name="CT_SSupPr">
454
+ <xsd:sequence>
455
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
456
+ </xsd:sequence>
457
+ </xsd:complexType>
458
+ <xsd:complexType name="CT_SSup">
459
+ <xsd:sequence>
460
+ <xsd:element name="sSupPr" type="CT_SSupPr" minOccurs="0"/>
461
+ <xsd:element name="e" type="CT_OMathArg"/>
462
+ <xsd:element name="sup" type="CT_OMathArg"/>
463
+ </xsd:sequence>
464
+ </xsd:complexType>
465
+ <xsd:group name="EG_OMathMathElements">
466
+ <xsd:choice>
467
+ <xsd:element name="acc" type="CT_Acc"/>
468
+ <xsd:element name="bar" type="CT_Bar"/>
469
+ <xsd:element name="box" type="CT_Box"/>
470
+ <xsd:element name="borderBox" type="CT_BorderBox"/>
471
+ <xsd:element name="d" type="CT_D"/>
472
+ <xsd:element name="eqArr" type="CT_EqArr"/>
473
+ <xsd:element name="f" type="CT_F"/>
474
+ <xsd:element name="func" type="CT_Func"/>
475
+ <xsd:element name="groupChr" type="CT_GroupChr"/>
476
+ <xsd:element name="limLow" type="CT_LimLow"/>
477
+ <xsd:element name="limUpp" type="CT_LimUpp"/>
478
+ <xsd:element name="m" type="CT_M"/>
479
+ <xsd:element name="nary" type="CT_Nary"/>
480
+ <xsd:element name="phant" type="CT_Phant"/>
481
+ <xsd:element name="rad" type="CT_Rad"/>
482
+ <xsd:element name="sPre" type="CT_SPre"/>
483
+ <xsd:element name="sSub" type="CT_SSub"/>
484
+ <xsd:element name="sSubSup" type="CT_SSubSup"/>
485
+ <xsd:element name="sSup" type="CT_SSup"/>
486
+ <xsd:element name="r" type="CT_R"/>
487
+ </xsd:choice>
488
+ </xsd:group>
489
+ <xsd:group name="EG_OMathElements">
490
+ <xsd:choice>
491
+ <xsd:group ref="EG_OMathMathElements"/>
492
+ <xsd:group ref="w:EG_PContentMath"/>
493
+ </xsd:choice>
494
+ </xsd:group>
495
+ <xsd:complexType name="CT_OMathArgPr">
496
+ <xsd:sequence>
497
+ <xsd:element name="argSz" type="CT_Integer2" minOccurs="0"/>
498
+ </xsd:sequence>
499
+ </xsd:complexType>
500
+ <xsd:complexType name="CT_OMathArg">
501
+ <xsd:sequence>
502
+ <xsd:element name="argPr" type="CT_OMathArgPr" minOccurs="0"/>
503
+ <xsd:group ref="EG_OMathElements" minOccurs="0" maxOccurs="unbounded"/>
504
+ <xsd:element name="ctrlPr" type="CT_CtrlPr" minOccurs="0"/>
505
+ </xsd:sequence>
506
+ </xsd:complexType>
507
+ <xsd:simpleType name="ST_Jc">
508
+ <xsd:restriction base="xsd:string">
509
+ <xsd:enumeration value="left"/>
510
+ <xsd:enumeration value="right"/>
511
+ <xsd:enumeration value="center"/>
512
+ <xsd:enumeration value="centerGroup"/>
513
+ </xsd:restriction>
514
+ </xsd:simpleType>
515
+ <xsd:complexType name="CT_OMathJc">
516
+ <xsd:attribute name="val" type="ST_Jc"/>
517
+ </xsd:complexType>
518
+ <xsd:complexType name="CT_OMathParaPr">
519
+ <xsd:sequence>
520
+ <xsd:element name="jc" type="CT_OMathJc" minOccurs="0"/>
521
+ </xsd:sequence>
522
+ </xsd:complexType>
523
+ <xsd:complexType name="CT_TwipsMeasure">
524
+ <xsd:attribute name="val" type="s:ST_TwipsMeasure" use="required"/>
525
+ </xsd:complexType>
526
+ <xsd:simpleType name="ST_BreakBin">
527
+ <xsd:restriction base="xsd:string">
528
+ <xsd:enumeration value="before"/>
529
+ <xsd:enumeration value="after"/>
530
+ <xsd:enumeration value="repeat"/>
531
+ </xsd:restriction>
532
+ </xsd:simpleType>
533
+ <xsd:complexType name="CT_BreakBin">
534
+ <xsd:attribute name="val" type="ST_BreakBin"/>
535
+ </xsd:complexType>
536
+ <xsd:simpleType name="ST_BreakBinSub">
537
+ <xsd:restriction base="xsd:string">
538
+ <xsd:enumeration value="--"/>
539
+ <xsd:enumeration value="-+"/>
540
+ <xsd:enumeration value="+-"/>
541
+ </xsd:restriction>
542
+ </xsd:simpleType>
543
+ <xsd:complexType name="CT_BreakBinSub">
544
+ <xsd:attribute name="val" type="ST_BreakBinSub"/>
545
+ </xsd:complexType>
546
+ <xsd:complexType name="CT_MathPr">
547
+ <xsd:sequence>
548
+ <xsd:element name="mathFont" type="CT_String" minOccurs="0"/>
549
+ <xsd:element name="brkBin" type="CT_BreakBin" minOccurs="0"/>
550
+ <xsd:element name="brkBinSub" type="CT_BreakBinSub" minOccurs="0"/>
551
+ <xsd:element name="smallFrac" type="CT_OnOff" minOccurs="0"/>
552
+ <xsd:element name="dispDef" type="CT_OnOff" minOccurs="0"/>
553
+ <xsd:element name="lMargin" type="CT_TwipsMeasure" minOccurs="0"/>
554
+ <xsd:element name="rMargin" type="CT_TwipsMeasure" minOccurs="0"/>
555
+ <xsd:element name="defJc" type="CT_OMathJc" minOccurs="0"/>
556
+ <xsd:element name="preSp" type="CT_TwipsMeasure" minOccurs="0"/>
557
+ <xsd:element name="postSp" type="CT_TwipsMeasure" minOccurs="0"/>
558
+ <xsd:element name="interSp" type="CT_TwipsMeasure" minOccurs="0"/>
559
+ <xsd:element name="intraSp" type="CT_TwipsMeasure" minOccurs="0"/>
560
+ <xsd:choice minOccurs="0">
561
+ <xsd:element name="wrapIndent" type="CT_TwipsMeasure"/>
562
+ <xsd:element name="wrapRight" type="CT_OnOff"/>
563
+ </xsd:choice>
564
+ <xsd:element name="intLim" type="CT_LimLoc" minOccurs="0"/>
565
+ <xsd:element name="naryLim" type="CT_LimLoc" minOccurs="0"/>
566
+ </xsd:sequence>
567
+ </xsd:complexType>
568
+ <xsd:element name="mathPr" type="CT_MathPr"/>
569
+ <xsd:complexType name="CT_OMathPara">
570
+ <xsd:sequence>
571
+ <xsd:element name="oMathParaPr" type="CT_OMathParaPr" minOccurs="0"/>
572
+ <xsd:element name="oMath" type="CT_OMath" maxOccurs="unbounded"/>
573
+ </xsd:sequence>
574
+ </xsd:complexType>
575
+ <xsd:complexType name="CT_OMath">
576
+ <xsd:sequence>
577
+ <xsd:group ref="EG_OMathElements" minOccurs="0" maxOccurs="unbounded"/>
578
+ </xsd:sequence>
579
+ </xsd:complexType>
580
+ <xsd:element name="oMathPara" type="CT_OMathPara"/>
581
+ <xsd:element name="oMath" type="CT_OMath"/>
582
+ </xsd:schema>
scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd ADDED
@@ -0,0 +1,25 @@
1
+ <?xml version="1.0" encoding="utf-8"?>
2
+ <xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
3
+ xmlns="http://schemas.openxmlformats.org/officeDocument/2006/relationships"
4
+ xmlns:r="http://schemas.openxmlformats.org/officeDocument/2006/relationships"
5
+ elementFormDefault="qualified"
6
+ targetNamespace="http://schemas.openxmlformats.org/officeDocument/2006/relationships"
7
+ blockDefault="#all">
8
+ <xsd:simpleType name="ST_RelationshipId">
9
+ <xsd:restriction base="xsd:string"/>
10
+ </xsd:simpleType>
11
+ <xsd:attribute name="id" type="ST_RelationshipId"/>
12
+ <xsd:attribute name="embed" type="ST_RelationshipId"/>
13
+ <xsd:attribute name="link" type="ST_RelationshipId"/>
14
+ <xsd:attribute name="dm" type="ST_RelationshipId" default=""/>
15
+ <xsd:attribute name="lo" type="ST_RelationshipId" default=""/>
16
+ <xsd:attribute name="qs" type="ST_RelationshipId" default=""/>
17
+ <xsd:attribute name="cs" type="ST_RelationshipId" default=""/>
18
+ <xsd:attribute name="blip" type="ST_RelationshipId" default=""/>
19
+ <xsd:attribute name="pict" type="ST_RelationshipId"/>
20
+ <xsd:attribute name="href" type="ST_RelationshipId"/>
21
+ <xsd:attribute name="topLeft" type="ST_RelationshipId"/>
22
+ <xsd:attribute name="topRight" type="ST_RelationshipId"/>
23
+ <xsd:attribute name="bottomLeft" type="ST_RelationshipId"/>
24
+ <xsd:attribute name="bottomRight" type="ST_RelationshipId"/>
25
+ </xsd:schema>