scientific-writer 2.2.1__py3-none-any.whl → 2.2.3__py3-none-any.whl

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  1. scientific_writer/.claude/WRITER.md +748 -0
  2. scientific_writer/.claude/settings.local.json +30 -0
  3. scientific_writer/.claude/skills/citation-management/SKILL.md +1046 -0
  4. scientific_writer/.claude/skills/citation-management/assets/bibtex_template.bib +264 -0
  5. scientific_writer/.claude/skills/citation-management/assets/citation_checklist.md +386 -0
  6. scientific_writer/.claude/skills/citation-management/references/bibtex_formatting.md +908 -0
  7. scientific_writer/.claude/skills/citation-management/references/citation_validation.md +794 -0
  8. scientific_writer/.claude/skills/citation-management/references/google_scholar_search.md +725 -0
  9. scientific_writer/.claude/skills/citation-management/references/metadata_extraction.md +870 -0
  10. scientific_writer/.claude/skills/citation-management/references/pubmed_search.md +839 -0
  11. scientific_writer/.claude/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
  12. scientific_writer/.claude/skills/citation-management/scripts/extract_metadata.py +569 -0
  13. scientific_writer/.claude/skills/citation-management/scripts/format_bibtex.py +349 -0
  14. scientific_writer/.claude/skills/citation-management/scripts/search_google_scholar.py +282 -0
  15. scientific_writer/.claude/skills/citation-management/scripts/search_pubmed.py +398 -0
  16. scientific_writer/.claude/skills/citation-management/scripts/validate_citations.py +497 -0
  17. scientific_writer/.claude/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
  18. scientific_writer/.claude/skills/clinical-reports/README.md +236 -0
  19. scientific_writer/.claude/skills/clinical-reports/SKILL.md +1088 -0
  20. scientific_writer/.claude/skills/clinical-reports/assets/case_report_template.md +352 -0
  21. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
  22. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
  23. scientific_writer/.claude/skills/clinical-reports/assets/consult_note_template.md +305 -0
  24. scientific_writer/.claude/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
  25. scientific_writer/.claude/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
  26. scientific_writer/.claude/skills/clinical-reports/assets/history_physical_template.md +305 -0
  27. scientific_writer/.claude/skills/clinical-reports/assets/lab_report_template.md +309 -0
  28. scientific_writer/.claude/skills/clinical-reports/assets/pathology_report_template.md +249 -0
  29. scientific_writer/.claude/skills/clinical-reports/assets/quality_checklist.md +338 -0
  30. scientific_writer/.claude/skills/clinical-reports/assets/radiology_report_template.md +318 -0
  31. scientific_writer/.claude/skills/clinical-reports/assets/soap_note_template.md +253 -0
  32. scientific_writer/.claude/skills/clinical-reports/references/case_report_guidelines.md +570 -0
  33. scientific_writer/.claude/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
  34. scientific_writer/.claude/skills/clinical-reports/references/data_presentation.md +530 -0
  35. scientific_writer/.claude/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
  36. scientific_writer/.claude/skills/clinical-reports/references/medical_terminology.md +588 -0
  37. scientific_writer/.claude/skills/clinical-reports/references/patient_documentation.md +744 -0
  38. scientific_writer/.claude/skills/clinical-reports/references/peer_review_standards.md +585 -0
  39. scientific_writer/.claude/skills/clinical-reports/references/regulatory_compliance.md +577 -0
  40. scientific_writer/.claude/skills/clinical-reports/scripts/check_deidentification.py +346 -0
  41. scientific_writer/.claude/skills/clinical-reports/scripts/compliance_checker.py +78 -0
  42. scientific_writer/.claude/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
  43. scientific_writer/.claude/skills/clinical-reports/scripts/format_adverse_events.py +103 -0
  44. scientific_writer/.claude/skills/clinical-reports/scripts/generate_report_template.py +163 -0
  45. scientific_writer/.claude/skills/clinical-reports/scripts/terminology_validator.py +133 -0
  46. scientific_writer/.claude/skills/clinical-reports/scripts/validate_case_report.py +334 -0
  47. scientific_writer/.claude/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
  48. scientific_writer/.claude/skills/document-skills/docx/LICENSE.txt +30 -0
  49. scientific_writer/.claude/skills/document-skills/docx/SKILL.md +197 -0
  50. scientific_writer/.claude/skills/document-skills/docx/docx-js.md +350 -0
  51. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  52. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  53. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  54. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  55. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  56. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  57. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  58. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  59. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  60. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  61. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  62. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  63. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  64. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  65. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  66. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  67. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  68. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  69. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  70. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  71. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  72. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  73. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  74. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  75. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  76. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  77. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  78. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  79. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  80. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  81. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  82. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
  83. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  84. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  85. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  86. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  87. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  88. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  89. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  90. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
  91. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
  92. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
  93. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
  94. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
  95. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
  96. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
  97. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
  98. scientific_writer/.claude/skills/document-skills/docx/ooxml.md +610 -0
  99. scientific_writer/.claude/skills/document-skills/docx/scripts/__init__.py +1 -0
  100. scientific_writer/.claude/skills/document-skills/docx/scripts/document.py +1276 -0
  101. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
  102. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
  103. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
  104. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
  105. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/people.xml +3 -0
  106. scientific_writer/.claude/skills/document-skills/docx/scripts/utilities.py +374 -0
  107. scientific_writer/.claude/skills/document-skills/pdf/LICENSE.txt +30 -0
  108. scientific_writer/.claude/skills/document-skills/pdf/SKILL.md +294 -0
  109. scientific_writer/.claude/skills/document-skills/pdf/forms.md +205 -0
  110. scientific_writer/.claude/skills/document-skills/pdf/reference.md +612 -0
  111. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
  112. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
  113. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
  114. scientific_writer/.claude/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
  115. scientific_writer/.claude/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
  116. scientific_writer/.claude/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
  117. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
  118. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
  119. scientific_writer/.claude/skills/document-skills/pptx/LICENSE.txt +30 -0
  120. scientific_writer/.claude/skills/document-skills/pptx/SKILL.md +484 -0
  121. scientific_writer/.claude/skills/document-skills/pptx/html2pptx.md +625 -0
  122. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  123. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  124. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  125. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  126. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  127. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  128. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  129. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  130. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  131. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  132. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  133. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  134. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  135. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  136. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  137. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  138. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  139. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  140. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  141. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  142. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  143. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  144. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  145. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  146. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  147. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  148. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  149. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  150. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  151. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  152. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  153. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
  154. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  155. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  156. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  157. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  158. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  159. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  160. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  161. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/pack.py +159 -0
  162. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/unpack.py +29 -0
  163. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validate.py +69 -0
  164. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +15 -0
  165. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/base.py +951 -0
  166. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +274 -0
  167. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +315 -0
  168. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +279 -0
  169. scientific_writer/.claude/skills/document-skills/pptx/ooxml.md +427 -0
  170. scientific_writer/.claude/skills/document-skills/pptx/scripts/html2pptx.js +979 -0
  171. scientific_writer/.claude/skills/document-skills/pptx/scripts/inventory.py +1020 -0
  172. scientific_writer/.claude/skills/document-skills/pptx/scripts/rearrange.py +231 -0
  173. scientific_writer/.claude/skills/document-skills/pptx/scripts/replace.py +385 -0
  174. scientific_writer/.claude/skills/document-skills/pptx/scripts/thumbnail.py +450 -0
  175. scientific_writer/.claude/skills/document-skills/xlsx/LICENSE.txt +30 -0
  176. scientific_writer/.claude/skills/document-skills/xlsx/SKILL.md +289 -0
  177. scientific_writer/.claude/skills/document-skills/xlsx/recalc.py +178 -0
  178. scientific_writer/.claude/skills/hypothesis-generation/SKILL.md +155 -0
  179. scientific_writer/.claude/skills/hypothesis-generation/assets/hypothesis_output_template.md +302 -0
  180. scientific_writer/.claude/skills/hypothesis-generation/references/experimental_design_patterns.md +327 -0
  181. scientific_writer/.claude/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +196 -0
  182. scientific_writer/.claude/skills/hypothesis-generation/references/literature_search_strategies.md +505 -0
  183. scientific_writer/.claude/skills/latex-posters/README.md +417 -0
  184. scientific_writer/.claude/skills/latex-posters/SKILL.md +919 -0
  185. scientific_writer/.claude/skills/latex-posters/assets/baposter_template.tex +257 -0
  186. scientific_writer/.claude/skills/latex-posters/assets/beamerposter_template.tex +244 -0
  187. scientific_writer/.claude/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
  188. scientific_writer/.claude/skills/latex-posters/assets/tikzposter_template.tex +251 -0
  189. scientific_writer/.claude/skills/latex-posters/references/latex_poster_packages.md +745 -0
  190. scientific_writer/.claude/skills/latex-posters/references/poster_content_guide.md +748 -0
  191. scientific_writer/.claude/skills/latex-posters/references/poster_design_principles.md +806 -0
  192. scientific_writer/.claude/skills/latex-posters/references/poster_layout_design.md +900 -0
  193. scientific_writer/.claude/skills/latex-posters/scripts/review_poster.sh +214 -0
  194. scientific_writer/.claude/skills/literature-review/SKILL.md +546 -0
  195. scientific_writer/.claude/skills/literature-review/assets/review_template.md +412 -0
  196. scientific_writer/.claude/skills/literature-review/references/citation_styles.md +166 -0
  197. scientific_writer/.claude/skills/literature-review/references/database_strategies.md +381 -0
  198. scientific_writer/.claude/skills/literature-review/scripts/generate_pdf.py +176 -0
  199. scientific_writer/.claude/skills/literature-review/scripts/search_databases.py +303 -0
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  285. scientific_writer/.claude/skills/treatment-plans/scripts/generate_template.py +244 -0
  286. scientific_writer/.claude/skills/treatment-plans/scripts/timeline_generator.py +369 -0
  287. scientific_writer/.claude/skills/treatment-plans/scripts/validate_treatment_plan.py +367 -0
  288. scientific_writer/.claude/skills/venue-templates/SKILL.md +590 -0
  289. scientific_writer/.claude/skills/venue-templates/assets/grants/nih_specific_aims.tex +235 -0
  290. scientific_writer/.claude/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
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  292. scientific_writer/.claude/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
  293. scientific_writer/.claude/skills/venue-templates/assets/journals/plos_one.tex +317 -0
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  297. scientific_writer/.claude/skills/venue-templates/references/journals_formatting.md +486 -0
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  300. scientific_writer/.claude/skills/venue-templates/scripts/query_template.py +260 -0
  301. scientific_writer/.claude/skills/venue-templates/scripts/validate_format.py +255 -0
  302. scientific_writer/__init__.py +1 -1
  303. scientific_writer/api.py +9 -5
  304. scientific_writer/cli.py +9 -5
  305. scientific_writer/core.py +28 -5
  306. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/METADATA +1 -1
  307. scientific_writer-2.2.3.dist-info/RECORD +312 -0
  308. scientific_writer-2.2.1.dist-info/RECORD +0 -11
  309. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/WHEEL +0 -0
  310. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/entry_points.txt +0 -0
  311. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/licenses/LICENSE +0 -0
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+ # Specialty-Specific Treatment Plan Guidelines
2
+
3
+ ## Overview
4
+
5
+ This reference provides detailed guidelines for developing treatment plans specific to each of the six template types: general medical, rehabilitation, mental health, chronic disease management, perioperative, and pain management. Each section includes specialty-specific considerations, clinical pearls, and best practices.
6
+
7
+ ## 1. General Medical Treatment Plans
8
+
9
+ ### Applicable Conditions
10
+ - Chronic diseases: Diabetes, hypertension, heart failure, COPD, asthma
11
+ - Common acute conditions requiring structured follow-up
12
+ - Primary care management of stable chronic conditions
13
+
14
+ ### Key Assessment Components
15
+
16
+ **Baseline Status**:
17
+ - Vital signs, BMI, functional status
18
+ - Disease-specific metrics (HbA1c, BP, lipids, PFTs)
19
+ - Comorbidity assessment
20
+ - Medication reconciliation
21
+ - Social determinants of health screening
22
+
23
+ **Disease Severity Staging**:
24
+ - Use validated staging systems when available
25
+ - Examples: CKD stages 1-5, GOLD COPD stages I-IV, NYHA heart failure classes I-IV, ADA diabetes complications
26
+ - Document severity to guide treatment intensity
27
+
28
+ ### Treatment Goal Specifics
29
+
30
+ **Guideline-Based Targets**:
31
+ - HbA1c <7% for most diabetics (<8% if elderly, limited life expectancy)
32
+ - BP <130/80 for most; <140/90 if elderly or low cardiovascular risk
33
+ - LDL <70 mg/dL if ASCVD, <100 mg/dL moderate risk
34
+ - Use individualized targets based on patient factors
35
+
36
+ **Functional Goals**:
37
+ - Maintain independence in ADLs
38
+ - Return to work if applicable
39
+ - Engage in valued activities
40
+ - Quality of life improvement
41
+
42
+ ### Pharmacotherapy Considerations
43
+
44
+ **Polypharmacy Management**:
45
+ - Consider deprescribing when possible (Beers Criteria for elderly)
46
+ - Medication reconciliation at each visit
47
+ - Simplify regimens (once-daily dosing, combination pills)
48
+ - Address adherence barriers (cost, side effects, complexity)
49
+
50
+ **Drug-Disease Interactions**:
51
+ - Avoid NSAIDs if CKD, heart failure
52
+ - Caution with metformin if eGFR <30
53
+ - Beta-blockers contraindicated in severe COPD/asthma (use cardioselective if needed)
54
+
55
+ ### Monitoring Schedules by Condition
56
+
57
+ **Diabetes**:
58
+ - HbA1c every 3 months if not at goal, every 6 months if stable
59
+ - Annual: dilated eye exam, foot exam, urine ACR, lipids
60
+ - Each visit: BP, weight, medication adherence
61
+
62
+ **Hypertension**:
63
+ - Home BP monitoring (HBPM) - most accurate, average of multiple readings
64
+ - Office BP at each visit
65
+ - Labs (BMP for K+, creatinine) 1-2 weeks after ACE/ARB initiation, then annually
66
+
67
+ **Heart Failure**:
68
+ - Daily weights (report gain >2-3 lbs in 2 days)
69
+ - BNP/NT-proBNP when clinically changing
70
+ - Echo annually or if EF change suspected
71
+ - Medication titration every 2 weeks during optimization phase
72
+
73
+ ### Primary Care Integration
74
+
75
+ **Preventive Care**:
76
+ - Include age-appropriate cancer screenings
77
+ - Vaccination schedule (flu, pneumococcal, zoster, COVID)
78
+ - Lifestyle counseling (tobacco, alcohol, diet, exercise)
79
+
80
+ **Chronic Disease Management Models**:
81
+ - Chronic Care Model components: Self-management support, delivery system redesign, clinical information systems, decision support
82
+ - Team-based care: Involvement of nurses, pharmacists, dietitians, care coordinators
83
+
84
+ ---
85
+
86
+ ## 2. Rehabilitation Treatment Plans
87
+
88
+ ### Applicable Settings
89
+ - Post-acute inpatient rehabilitation
90
+ - Outpatient PT/OT/SLP
91
+ - Home health therapy
92
+ - Skilled nursing facility rehabilitation
93
+
94
+ ### Key Assessment Components
95
+
96
+ **Functional Assessments (use validated tools)**:
97
+ - **FIM** (Functional Independence Measure): 18 items, 7-point scale, 126 total - most widely used
98
+ - **Barthel Index**: 10 ADLs, 100-point scale - simpler than FIM
99
+ - **Berg Balance Scale**: 14 tasks, 56 points - fall risk (score <45 = high risk)
100
+ - **6-Minute Walk Test**: Distance walked in 6 minutes - cardiopulmonary endurance
101
+ - **Timed Up and Go (TUG)**: Time to stand, walk 3 meters, turn, return, sit - fall risk (>12 sec = high risk)
102
+ - **9-Hole Peg Test**: Upper extremity fine motor speed
103
+ - **ROM**: Goniometric measurement for each joint
104
+ - **Manual Muscle Testing**: 0-5 scale (0=no contraction, 5=normal strength)
105
+
106
+ **ICF Framework Goals**:
107
+ - **Body Functions/Structures**: Impairments (ROM, strength, balance)
108
+ - **Activity**: Task performance (walk 150 feet, dress independently)
109
+ - **Participation**: Life roles (return to work, community engagement)
110
+
111
+ ### Rehabilitation Goals Specifics
112
+
113
+ **Goal Levels**:
114
+ 1. **Impairment Goals**: Increase knee ROM 90→110°, improve MMT 3/5→4/5
115
+ 2. **Activity Goals**: Ambulate 300 feet with walker, transfer bed-chair independently
116
+ 3. **Participation Goals**: Return to work, resume hobbies, live independently
117
+
118
+ **Assistance Levels** (document current and goal):
119
+ - I = Independent
120
+ - SV = Supervision (cues, no physical assist)
121
+ - CG = Contact Guard (hands close, no assist)
122
+ - Min A = Minimal Assist (patient does 75%+)
123
+ - Mod A = Moderate Assist (patient does 50-74%)
124
+ - Max A = Maximal Assist (patient does 25-49%)
125
+ - Total A = Total Assist (patient does <25%)
126
+
127
+ ### Therapy Interventions
128
+
129
+ **Physical Therapy**:
130
+ - Therapeutic exercise dose: Specify sets, reps, resistance, frequency
131
+ - Gait training: Distance, assistive device, supervision level
132
+ - Balance training: Static, dynamic, perturbation-based
133
+ - Modalities: Heat, ice, TENS, E-stim - adjuncts only, not primary intervention
134
+
135
+ **Occupational Therapy**:
136
+ - ADL training: Use of adaptive equipment (reacher, sock aid, built-up utensils)
137
+ - Upper extremity strengthening: Functional tasks, fine motor activities
138
+ - Cognitive retraining: Memory strategies, attention training, executive function
139
+
140
+ **Speech-Language Pathology**:
141
+ - Dysphagia: Diet texture modifications (IDDSI levels), swallow strategies (chin tuck, multiple swallows)
142
+ - Aphasia therapy: Constraint-induced language therapy, semantic feature analysis
143
+ - Dysarthria: Articulation drills, rate control, augmentative communication
144
+
145
+ ### Home Exercise Program (HEP)
146
+
147
+ **Essentials**:
148
+ - Illustrated handout with pictures/descriptions
149
+ - Specific dosage (e.g., "2 sets x 10 reps, daily")
150
+ - Progression criteria
151
+ - Safety precautions
152
+ - Patient/caregiver demonstrates understanding
153
+
154
+ ### DME and Environmental Modifications
155
+
156
+ **Common DME**:
157
+ - Ambulation: Walker, cane, crutches (specify type, e.g., front-wheeled walker)
158
+ - Bathroom: Raised toilet seat, shower chair, grab bars
159
+ - Dressing: Reacher, sock aid, long shoe horn, button hook, elastic laces
160
+ - Mobility: Hospital bed, wheelchair (if needed)
161
+
162
+ **Home Modifications**:
163
+ - Ramp for stairs
164
+ - Stair lift if multiple levels
165
+ - Remove scatter rugs (fall hazard)
166
+ - Improve lighting
167
+ - Rearrange for accessibility
168
+
169
+ ### Discharge Planning
170
+
171
+ **Discharge Criteria**:
172
+ - Functional plateau reached or goals met
173
+ - Safe for discharge setting
174
+ - Patient/caregiver educated
175
+ - DME obtained and home modifications complete
176
+ - Follow-up arranged
177
+
178
+ **Discharge Destination**:
179
+ - Home with outpatient therapy
180
+ - Home with home health
181
+ - Skilled nursing facility
182
+ - Long-term acute care hospital (if medically complex)
183
+
184
+ ---
185
+
186
+ ## 3. Mental Health Treatment Plans
187
+
188
+ ### Applicable Conditions
189
+ - Major depressive disorder, dysthymia
190
+ - Anxiety disorders (GAD, panic, social anxiety, specific phobias)
191
+ - Bipolar disorder
192
+ - Schizophrenia and psychotic disorders
193
+ - PTSD and trauma-related disorders
194
+ - Eating disorders
195
+ - Substance use disorders
196
+ - Personality disorders
197
+
198
+ ### Key Assessment Components
199
+
200
+ **Diagnostic Assessment**:
201
+ - Meet DSM-5 criteria for diagnosis
202
+ - Symptom severity assessment (use validated scales)
203
+ - Functional impairment (work, relationships, self-care)
204
+ - Psychiatric history (prior episodes, treatments, hospitalizations)
205
+ - Substance use assessment (AUDIT, DAST)
206
+ - Trauma history
207
+ - Family psychiatric history
208
+
209
+ **Validated Assessment Tools**:
210
+ - **PHQ-9**: Depression severity (0-27, scores ≥10 indicate moderate-severe depression)
211
+ - **GAD-7**: Anxiety severity (0-21, scores ≥10 indicate moderate-severe anxiety)
212
+ - **MDQ** (Mood Disorder Questionnaire): Bipolar screening
213
+ - **PC-PTSD-5**: PTSD screening, then full PCL-5 if positive
214
+ - **AUDIT**: Alcohol use (0-40, ≥8 indicates hazardous drinking)
215
+ - **PHQ-15**: Somatic symptoms
216
+ - **WHODAS 2.0**: Functional disability
217
+
218
+ **Risk Assessment**:
219
+ - **Suicide Risk**: Use Columbia Suicide Severity Rating Scale (C-SSRS)
220
+ - Ideation (passive, active, plan, intent)
221
+ - Protective factors (reasons for living, social support)
222
+ - Risk factors (prior attempts, impulsivity, access to means)
223
+ - **Violence/Homicide Risk**: History of violence, current ideation, access to weapons
224
+
225
+ ### Treatment Goals Specifics
226
+
227
+ **Symptom Goals**:
228
+ - Reduction in standardized scale scores (e.g., PHQ-9 from 18→<10→<5 for remission)
229
+ - Specific symptom targets (sleep 7 hours, reduce panic attacks from 3/week→0)
230
+
231
+ **Functional Goals**:
232
+ - Return to work/school
233
+ - Resume social activities
234
+ - Improve relationships
235
+ - Self-care independence
236
+
237
+ **Recovery-Oriented Goals**:
238
+ - Personal meaning and purpose
239
+ - Hope and empowerment
240
+ - Social connections and community integration
241
+ - Independent living
242
+
243
+ ### Evidence-Based Psychotherapies
244
+
245
+ **Depression**:
246
+ - **CBT**: 12-16 sessions, homework between sessions
247
+ - **Behavioral Activation**: Focus on increasing rewarding activities
248
+ - **Interpersonal Therapy (IPT)**: 12-16 sessions, focus on relationships
249
+ - **Problem-Solving Therapy**: Brief (6-8 sessions), structured approach
250
+
251
+ **Anxiety**:
252
+ - **CBT with exposure**: Gold standard for anxiety disorders
253
+ - **Panic Control Therapy**: Interoceptive exposure, cognitive restructuring
254
+ - **Social skills training**: For social anxiety
255
+
256
+ **PTSD**:
257
+ - **Prolonged Exposure (PE)**: 8-15 sessions, imaginal and in vivo exposure
258
+ - **Cognitive Processing Therapy (CPT)**: 12 sessions, challenge trauma-related cognitions
259
+ - **EMDR** (Eye Movement Desensitization and Reprocessing): Alternative, less evidence than PE/CPT
260
+
261
+ **Bipolar**:
262
+ - **Family-Focused Therapy**: Psychoeducation, communication, problem-solving
263
+ - **Interpersonal and Social Rhythm Therapy**: Stabilize daily routines, sleep
264
+
265
+ **Borderline Personality Disorder**:
266
+ - **DBT** (Dialectical Behavior Therapy): 1 year program, individual + group + phone coaching
267
+ - Skills: Mindfulness, distress tolerance, emotion regulation, interpersonal effectiveness
268
+
269
+ ### Psychopharmacology Specifics
270
+
271
+ **Antidepressants**:
272
+ - First-line: SSRIs (sertraline, escitalopram, fluoxetine)
273
+ - 2-4 weeks for initial response, 6-8 weeks for full effect
274
+ - Titrate after 2-4 weeks if partial response
275
+ - Switch if no response after full trial
276
+ - Augmentation strategies if partial response (second antidepressant, atypical antipsychotic, lithium)
277
+ - Continue 6-12 months after remission (longer if recurrent)
278
+
279
+ **Antipsychotics**:
280
+ - First-generation (typical): Haloperidol - high EPS risk, use second-generation preferred
281
+ - Second-generation (atypical): Risperidone, olanzapine, quetiapine, aripiprazole, lurasidone
282
+ - Monitoring: Metabolic syndrome (weight, glucose, lipids), EPS, prolactin, QTc
283
+
284
+ **Mood Stabilizers**:
285
+ - Lithium: Narrow therapeutic window, monitor levels (0.6-1.2 mEq/L), TSH, renal function
286
+ - Valproic acid: Monitor levels, LFTs, CBC (thrombocytopenia)
287
+ - Lamotrigine: Titrate slowly (risk of Stevens-Johnson syndrome if too fast)
288
+
289
+ ### Safety Planning
290
+
291
+ **Essential for All Mental Health Plans**:
292
+ - Warning signs (thoughts, feelings, behaviors)
293
+ - Internal coping strategies
294
+ - Social support contacts
295
+ - Professional contacts (therapist, psychiatrist, crisis line)
296
+ - Means restriction (firearms removed, medications limited)
297
+ - Reason for living
298
+
299
+ **Crisis Resources**:
300
+ - 988 Suicide & Crisis Lifeline
301
+ - Crisis Text Line (text HOME to 741741)
302
+ - Local mobile crisis team
303
+ - Emergency department
304
+
305
+ ---
306
+
307
+ ## 4. Chronic Disease Management Plans
308
+
309
+ ### Multiple Comorbidities Management
310
+
311
+ **Common Clusters**:
312
+ - Cardiometabolic: Diabetes + hypertension + hyperlipidemia + obesity
313
+ - Cardiopulmonary: Heart failure + COPD
314
+ - Renal-cardiovascular: CKD + hypertension + diabetes
315
+ - Mental-physical: Depression + chronic pain + chronic disease
316
+
317
+ ### Prioritization Strategies
318
+
319
+ **When Multiple Goals Compete**:
320
+ 1. **Life-threatening issues first**: Unstable angina, uncontrolled heart failure
321
+ 2. **High-impact, modifiable conditions**: Diabetes with HbA1c 10% (significant reduction possible)
322
+ 3. **Synergistic treatments**: Medications that help multiple conditions (SGLT2i for diabetes + heart failure + CKD)
323
+ 4. **Patient priorities**: What matters most to patient
324
+
325
+ ### Medication Optimization for Multimorbidity
326
+
327
+ **Synergistic Medications** (dual/triple benefit):
328
+ - **SGLT2 inhibitors**: Diabetes + heart failure + CKD
329
+ - **ACE inhibitors/ARBs**: Hypertension + diabetes (renal protection) + heart failure
330
+ - **Beta-blockers**: Hypertension + heart failure + CAD
331
+ - **Statins**: Hyperlipidemia + ASCVD prevention + diabetes
332
+ - **GLP-1 agonists**: Diabetes + weight loss + cardiovascular benefit
333
+
334
+ **Deprescribing**:
335
+ - Identify medications with limited benefit (e.g., strict glycemic control in limited life expectancy)
336
+ - Discontinue medications with more harm than benefit
337
+ - Simplify regimens (reduce pill burden)
338
+
339
+ ### Care Coordination
340
+
341
+ **Team-Based Care**:
342
+ - Primary care coordinates
343
+ - Specialists co-manage (cardiologist for HF, endocrinologist for diabetes)
344
+ - Care coordinator facilitates (schedules, education, barrier identification)
345
+ - Pharmacist reviews medications, optimizes therapy
346
+ - Dietitian provides medical nutrition therapy
347
+ - Social worker addresses social needs
348
+
349
+ **Communication**:
350
+ - Shared EHR when possible
351
+ - Care plan accessible to all team members
352
+ - Medication reconciliation after specialist visits
353
+ - Regular team meetings or e-consultations
354
+
355
+ ### Population Health Integration
356
+
357
+ **Registry Management**:
358
+ - Identify patients due for care (HbA1c testing, diabetic eye exam)
359
+ - Outreach for overdue preventive care
360
+ - Risk stratification (high-utilizers, complex patients)
361
+
362
+ **Transition Management**:
363
+ - Hospital discharge follow-up within 7 days
364
+ - Medication reconciliation post-discharge
365
+ - Red flags review
366
+ - Escalation plan if decompensating
367
+
368
+ ---
369
+
370
+ ## 5. Perioperative Care Plans
371
+
372
+ ### Preoperative Risk Assessment
373
+
374
+ **Cardiac Risk** (Revised Cardiac Risk Index - RCRI):
375
+ - High-risk surgery, ischemic heart disease, heart failure, CVD, diabetes on insulin, creatinine >2
376
+ - 0 points = <1% risk, 1 point = 1%, 2 points = 2.4%, ≥3 points = 5.4% risk of cardiac event
377
+
378
+ **If High Risk**: Consider further testing (stress test, echo), cardiology consultation, perioperative beta-blockade.
379
+
380
+ **Pulmonary Risk** (ARISCAT score):
381
+ - Age, SpO2, respiratory infection recent, preop anemia, surgical incision, duration, emergency
382
+ - Higher risk: Smoking cessation, incentive spirometry, early mobilization
383
+
384
+ **VTE Risk** (Caprini Score):
385
+ - Age, surgery type, mobility, prior VTE, obesity, cancer
386
+ - Stratify to guide prophylaxis (none, mechanical, pharmacologic, or both)
387
+
388
+ ### Preoperative Optimization
389
+
390
+ **Diabetes**:
391
+ - Target HbA1c <8% for elective surgery (delay if >9%)
392
+ - Hold metformin 24-48 hours before (risk of lactic acidosis)
393
+ - Hold SGLT2i 3-4 days before (DKA risk)
394
+ - Insulin: Reduce long-acting by 20-25% day of surgery, hold short-acting
395
+
396
+ **Hypertension**:
397
+ - Continue most medications through surgery
398
+ - Hold ACE/ARB morning of surgery (avoid intraop hypotension)
399
+ - Continue beta-blocker (avoid withdrawal)
400
+
401
+ **Anticoagulation**:
402
+ - Warfarin: Hold 5 days before, bridge with LMWH if high VTE risk
403
+ - DOACs: Hold 24-48 hours (based on renal function and bleeding risk)
404
+ - Antiplatelet: Continue aspirin for most surgeries, hold P2Y12 inhibitors (clopidogrel) 5-7 days if high bleeding risk
405
+
406
+ **Anemia**:
407
+ - Optimize iron stores preop (IV iron if time limited)
408
+ - Avoid transfusion triggers if possible (restrictive strategy)
409
+
410
+ ### Enhanced Recovery After Surgery (ERAS)
411
+
412
+ **Preoperative**:
413
+ - Patient education, expectation setting
414
+ - No prolonged fasting (clear liquids 2 hours before)
415
+ - Carbohydrate loading (reduces insulin resistance)
416
+ - No routine premedication
417
+
418
+ **Intraoperative**:
419
+ - Multimodal analgesia (minimize opioids)
420
+ - Goal-directed fluid therapy (avoid overhydration)
421
+ - Normothermia (prevent hypothermia)
422
+ - Antiemetic prophylaxis
423
+
424
+ **Postoperative**:
425
+ - Early mobilization (out of bed day of surgery)
426
+ - Early oral nutrition (resume diet POD 0-1)
427
+ - Multimodal analgesia (acetaminophen, NSAIDs, regional blocks)
428
+ - Remove tubes/drains early (Foley, NG tube, surgical drains)
429
+ - DVT prophylaxis
430
+
431
+ ### Postoperative Milestones
432
+
433
+ **Day of Surgery (POD 0)**:
434
+ - Out of bed to chair 4-6 hours post-op
435
+ - Sips of clear liquids if appropriate
436
+ - Pain controlled on multimodal regimen
437
+
438
+ **POD 1**:
439
+ - Ambulate in hallway
440
+ - Regular diet
441
+ - Foley catheter removed
442
+ - Transition to oral pain medications
443
+
444
+ **POD 2-3** (typical discharge for many surgeries):
445
+ - Ambulate 150+ feet
446
+ - Adequate oral intake
447
+ - Pain controlled on oral meds
448
+ - No complications requiring hospitalization
449
+
450
+ ### Discharge Readiness
451
+
452
+ **Criteria**:
453
+ - Adequate pain control on oral medications
454
+ - Tolerating regular diet
455
+ - Mobile (ambulate, transfers)
456
+ - Voiding spontaneously
457
+ - Stable vital signs
458
+ - No active complications
459
+ - Safe discharge plan (home support, DME arranged)
460
+
461
+ ---
462
+
463
+ ## 6. Pain Management Plans
464
+
465
+ ### Pain Assessment
466
+
467
+ **Comprehensive Pain Evaluation**:
468
+ - Location, radiation
469
+ - Quality (sharp, dull, burning, aching, shooting)
470
+ - Intensity (0-10 NRS)
471
+ - Temporal pattern (constant, intermittent, episodic)
472
+ - Aggravating/alleviating factors
473
+ - Functional impact (Brief Pain Inventory - BPI interference items)
474
+ - Prior treatments and responses
475
+
476
+ **Pain Classification**:
477
+ - **Nociceptive**: Somatic (MSK) or visceral (organ)
478
+ - **Neuropathic**: Nerve injury/dysfunction (burning, shooting, electric, numbness/tingling)
479
+ - **Nociplastic**: Central sensitization, fibromyalgia
480
+ - **Mixed**: Combination
481
+
482
+ ### Multimodal Analgesia Principles
483
+
484
+ **Goal**: Additive/synergistic pain relief from multiple mechanisms, opioid-sparing.
485
+
486
+ **Components**:
487
+ 1. Non-opioid analgesics (acetaminophen, NSAIDs)
488
+ 2. Adjuvant analgesics (gabapentinoids, SNRIs, TCAs for neuropathic)
489
+ 3. Topical agents (lidocaine patches, diclofenac gel, capsaicin)
490
+ 4. Interventional procedures (injections, nerve blocks, RFA, SCS)
491
+ 5. Physical therapies (PT, exercise, TENS)
492
+ 6. Psychological therapies (CBT-CP, mindfulness, biofeedback)
493
+ 7. Complementary therapies (acupuncture, massage, yoga)
494
+ 8. Opioids (if other modalities insufficient) - lowest dose, reassess frequently
495
+
496
+ ### Neuropathic Pain Specific Treatments
497
+
498
+ **First-Line**:
499
+ - Gabapentin 300mg titrate to 1800-3600mg/day divided TID
500
+ - Pregabalin 75mg BID titrate to 150-300mg BID
501
+ - Duloxetine 60mg daily (also for fibromyalgia, chronic MSK pain)
502
+ - TCAs (amitriptyline, nortriptyline) 10-75mg QHS - second-line due to side effects
503
+
504
+ **Topical**:
505
+ - Lidocaine patches 5% (localized neuropathic pain)
506
+ - Capsaicin 8% patch (high-concentration, applied by provider)
507
+
508
+ **Refractory**:
509
+ - Tramadol (dual mechanism - opioid + SNRI)
510
+ - Opioids (if severe and function-limiting despite above)
511
+
512
+ ### Opioid Prescribing (CDC Guidelines)
513
+
514
+ **Before Initiating**:
515
+ - Non-opioid multimodal therapies tried and inadequate
516
+ - Functional goals established (not just pain scores)
517
+ - Risks vs. benefits discussed and documented
518
+ - Opioid risk assessment (ORT, SOAPP)
519
+ - Informed consent discussion
520
+ - Treatment agreement signed
521
+ - PDMP checked
522
+ - Baseline UDS
523
+
524
+ **During Opioid Therapy**:
525
+ - Start low dose (<50 MME/day), short-acting
526
+ - Reassess frequently (every 1-3 months)
527
+ - Functional improvement expected (not just pain scores)
528
+ - UDS every 3-6 months (check for adherence and illicit substances)
529
+ - PDMP check each prescription or at least every 3 months
530
+ - Naloxone co-prescribed
531
+ - Avoid concurrent benzodiazepines
532
+ - If dose approaching 50 MME, reassess; avoid >90 MME if possible
533
+
534
+ **Tapering**:
535
+ - If not meeting functional goals
536
+ - Serious adverse effects
537
+ - Aberrant behaviors
538
+ - Patient request
539
+ - Slow taper: 10-25% dose reduction per week to month (faster if safety concern)
540
+
541
+ ### Interventional Pain Procedures
542
+
543
+ **Indications and Evidence**:
544
+ - **Epidural Steroid Injection**: Radicular pain from disc herniation/stenosis - short-term benefit
545
+ - **Facet Joint Injections**: Diagnostic (if >50% relief, proceed to RFA)
546
+ - **Radiofrequency Ablation**: 6-12 months relief for facet-mediated pain
547
+ - **Spinal Cord Stimulation**: Refractory neuropathic pain (FBSS, CRPS) - 50-60% success
548
+ - **Intrathecal Pump**: Severe refractory pain, cancer pain - delivers medication to CSF
549
+
550
+ **Documentation for Procedures**:
551
+ - Indication, prior conservative treatments tried
552
+ - Expected benefit and duration
553
+ - Risks discussed
554
+ - Number of injections/procedures allowed per year
555
+
556
+ ### Functional Goals Emphasis
557
+
558
+ **Shift from Pain Scores to Function**:
559
+ - "Reduce pain to 3/10" is less meaningful than "Walk 1 mile, return to work, play with grandchildren"
560
+ - BPI interference scores track functional impact
561
+ - SMART functional goals (see Goal Setting reference)
562
+
563
+ ### Psychological Integration
564
+
565
+ **CBT for Chronic Pain (CBT-CP)**:
566
+ - Pain education and reconceptualization (pain ≠ harm)
567
+ - Cognitive restructuring (challenge catastrophizing, all-or-nothing thinking)
568
+ - Activity pacing and graded exposure (increase activity without flares)
569
+ - Relaxation techniques
570
+ - Acceptance and mindfulness
571
+
572
+ **Essential for Chronic Pain**: Psychological factors (depression, anxiety, catastrophizing) perpetuate pain; must be addressed.
573
+
574
+ ---
575
+
576
+ ## Cross-Cutting Considerations for All Treatment Plans
577
+
578
+ ### Cultural Competence
579
+ - Ask about cultural health beliefs, practices
580
+ - Use interpreter services when language barriers exist
581
+ - Respect religious/spiritual practices in treatment
582
+ - Adapt interventions to cultural context when possible
583
+
584
+ ### Health Literacy
585
+ - Assess understanding (teach-back method)
586
+ - Use plain language, avoid jargon
587
+ - Visual aids, written materials at 5th-6th grade reading level
588
+ - Confirm patient can execute plan (demonstrate inhaler use, insulin injection, etc.)
589
+
590
+ ### Social Determinants of Health (SDOH)
591
+ - Screen for food insecurity, housing instability, transportation barriers
592
+ - Connect to community resources (SNAP, Medicaid, patient assistance programs)
593
+ - Address barriers in treatment plan (e.g., medication cost → generic alternatives, patient assistance)
594
+
595
+ ### Advance Care Planning
596
+ - Appropriate for serious illness, elderly, declining function
597
+ - Goals of care discussion
598
+ - Healthcare proxy designation
599
+ - Advance directive completion
600
+ - Preferences for resuscitation, intubation, dialysis, etc.
601
+
602
+ ---
603
+
604
+ **Document Version**: 1.0
605
+ **Last Updated**: January 2025
606
+ **Next Review**: January 2026
607
+