scientific-writer 2.2.1__py3-none-any.whl → 2.2.3__py3-none-any.whl

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  1. scientific_writer/.claude/WRITER.md +748 -0
  2. scientific_writer/.claude/settings.local.json +30 -0
  3. scientific_writer/.claude/skills/citation-management/SKILL.md +1046 -0
  4. scientific_writer/.claude/skills/citation-management/assets/bibtex_template.bib +264 -0
  5. scientific_writer/.claude/skills/citation-management/assets/citation_checklist.md +386 -0
  6. scientific_writer/.claude/skills/citation-management/references/bibtex_formatting.md +908 -0
  7. scientific_writer/.claude/skills/citation-management/references/citation_validation.md +794 -0
  8. scientific_writer/.claude/skills/citation-management/references/google_scholar_search.md +725 -0
  9. scientific_writer/.claude/skills/citation-management/references/metadata_extraction.md +870 -0
  10. scientific_writer/.claude/skills/citation-management/references/pubmed_search.md +839 -0
  11. scientific_writer/.claude/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
  12. scientific_writer/.claude/skills/citation-management/scripts/extract_metadata.py +569 -0
  13. scientific_writer/.claude/skills/citation-management/scripts/format_bibtex.py +349 -0
  14. scientific_writer/.claude/skills/citation-management/scripts/search_google_scholar.py +282 -0
  15. scientific_writer/.claude/skills/citation-management/scripts/search_pubmed.py +398 -0
  16. scientific_writer/.claude/skills/citation-management/scripts/validate_citations.py +497 -0
  17. scientific_writer/.claude/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
  18. scientific_writer/.claude/skills/clinical-reports/README.md +236 -0
  19. scientific_writer/.claude/skills/clinical-reports/SKILL.md +1088 -0
  20. scientific_writer/.claude/skills/clinical-reports/assets/case_report_template.md +352 -0
  21. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
  22. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
  23. scientific_writer/.claude/skills/clinical-reports/assets/consult_note_template.md +305 -0
  24. scientific_writer/.claude/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
  25. scientific_writer/.claude/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
  26. scientific_writer/.claude/skills/clinical-reports/assets/history_physical_template.md +305 -0
  27. scientific_writer/.claude/skills/clinical-reports/assets/lab_report_template.md +309 -0
  28. scientific_writer/.claude/skills/clinical-reports/assets/pathology_report_template.md +249 -0
  29. scientific_writer/.claude/skills/clinical-reports/assets/quality_checklist.md +338 -0
  30. scientific_writer/.claude/skills/clinical-reports/assets/radiology_report_template.md +318 -0
  31. scientific_writer/.claude/skills/clinical-reports/assets/soap_note_template.md +253 -0
  32. scientific_writer/.claude/skills/clinical-reports/references/case_report_guidelines.md +570 -0
  33. scientific_writer/.claude/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
  34. scientific_writer/.claude/skills/clinical-reports/references/data_presentation.md +530 -0
  35. scientific_writer/.claude/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
  36. scientific_writer/.claude/skills/clinical-reports/references/medical_terminology.md +588 -0
  37. scientific_writer/.claude/skills/clinical-reports/references/patient_documentation.md +744 -0
  38. scientific_writer/.claude/skills/clinical-reports/references/peer_review_standards.md +585 -0
  39. scientific_writer/.claude/skills/clinical-reports/references/regulatory_compliance.md +577 -0
  40. scientific_writer/.claude/skills/clinical-reports/scripts/check_deidentification.py +346 -0
  41. scientific_writer/.claude/skills/clinical-reports/scripts/compliance_checker.py +78 -0
  42. scientific_writer/.claude/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
  43. scientific_writer/.claude/skills/clinical-reports/scripts/format_adverse_events.py +103 -0
  44. scientific_writer/.claude/skills/clinical-reports/scripts/generate_report_template.py +163 -0
  45. scientific_writer/.claude/skills/clinical-reports/scripts/terminology_validator.py +133 -0
  46. scientific_writer/.claude/skills/clinical-reports/scripts/validate_case_report.py +334 -0
  47. scientific_writer/.claude/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
  48. scientific_writer/.claude/skills/document-skills/docx/LICENSE.txt +30 -0
  49. scientific_writer/.claude/skills/document-skills/docx/SKILL.md +197 -0
  50. scientific_writer/.claude/skills/document-skills/docx/docx-js.md +350 -0
  51. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  52. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  53. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  54. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  55. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  56. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  57. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  58. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  59. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  60. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  61. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  62. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  63. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  64. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  65. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  66. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  67. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  68. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  69. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  70. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  71. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  72. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  73. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  74. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  75. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  76. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  77. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  78. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  79. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  80. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  81. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  82. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
  83. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  84. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  85. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  86. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  87. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  88. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  89. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  90. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
  91. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
  92. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
  93. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
  94. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
  95. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
  96. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
  97. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
  98. scientific_writer/.claude/skills/document-skills/docx/ooxml.md +610 -0
  99. scientific_writer/.claude/skills/document-skills/docx/scripts/__init__.py +1 -0
  100. scientific_writer/.claude/skills/document-skills/docx/scripts/document.py +1276 -0
  101. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
  102. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
  103. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
  104. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
  105. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/people.xml +3 -0
  106. scientific_writer/.claude/skills/document-skills/docx/scripts/utilities.py +374 -0
  107. scientific_writer/.claude/skills/document-skills/pdf/LICENSE.txt +30 -0
  108. scientific_writer/.claude/skills/document-skills/pdf/SKILL.md +294 -0
  109. scientific_writer/.claude/skills/document-skills/pdf/forms.md +205 -0
  110. scientific_writer/.claude/skills/document-skills/pdf/reference.md +612 -0
  111. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
  112. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
  113. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
  114. scientific_writer/.claude/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
  115. scientific_writer/.claude/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
  116. scientific_writer/.claude/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
  117. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
  118. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
  119. scientific_writer/.claude/skills/document-skills/pptx/LICENSE.txt +30 -0
  120. scientific_writer/.claude/skills/document-skills/pptx/SKILL.md +484 -0
  121. scientific_writer/.claude/skills/document-skills/pptx/html2pptx.md +625 -0
  122. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  123. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  124. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  125. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  126. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  127. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  128. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  129. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  130. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  131. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  132. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  133. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  134. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  135. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  136. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  137. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  138. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  139. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  140. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  141. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  142. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  143. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  144. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  145. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  146. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  147. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  148. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  149. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  150. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  151. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  152. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  153. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
  154. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  155. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  156. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  157. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  158. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  159. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  160. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  161. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/pack.py +159 -0
  162. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/unpack.py +29 -0
  163. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validate.py +69 -0
  164. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +15 -0
  165. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/base.py +951 -0
  166. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +274 -0
  167. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +315 -0
  168. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +279 -0
  169. scientific_writer/.claude/skills/document-skills/pptx/ooxml.md +427 -0
  170. scientific_writer/.claude/skills/document-skills/pptx/scripts/html2pptx.js +979 -0
  171. scientific_writer/.claude/skills/document-skills/pptx/scripts/inventory.py +1020 -0
  172. scientific_writer/.claude/skills/document-skills/pptx/scripts/rearrange.py +231 -0
  173. scientific_writer/.claude/skills/document-skills/pptx/scripts/replace.py +385 -0
  174. scientific_writer/.claude/skills/document-skills/pptx/scripts/thumbnail.py +450 -0
  175. scientific_writer/.claude/skills/document-skills/xlsx/LICENSE.txt +30 -0
  176. scientific_writer/.claude/skills/document-skills/xlsx/SKILL.md +289 -0
  177. scientific_writer/.claude/skills/document-skills/xlsx/recalc.py +178 -0
  178. scientific_writer/.claude/skills/hypothesis-generation/SKILL.md +155 -0
  179. scientific_writer/.claude/skills/hypothesis-generation/assets/hypothesis_output_template.md +302 -0
  180. scientific_writer/.claude/skills/hypothesis-generation/references/experimental_design_patterns.md +327 -0
  181. scientific_writer/.claude/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +196 -0
  182. scientific_writer/.claude/skills/hypothesis-generation/references/literature_search_strategies.md +505 -0
  183. scientific_writer/.claude/skills/latex-posters/README.md +417 -0
  184. scientific_writer/.claude/skills/latex-posters/SKILL.md +919 -0
  185. scientific_writer/.claude/skills/latex-posters/assets/baposter_template.tex +257 -0
  186. scientific_writer/.claude/skills/latex-posters/assets/beamerposter_template.tex +244 -0
  187. scientific_writer/.claude/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
  188. scientific_writer/.claude/skills/latex-posters/assets/tikzposter_template.tex +251 -0
  189. scientific_writer/.claude/skills/latex-posters/references/latex_poster_packages.md +745 -0
  190. scientific_writer/.claude/skills/latex-posters/references/poster_content_guide.md +748 -0
  191. scientific_writer/.claude/skills/latex-posters/references/poster_design_principles.md +806 -0
  192. scientific_writer/.claude/skills/latex-posters/references/poster_layout_design.md +900 -0
  193. scientific_writer/.claude/skills/latex-posters/scripts/review_poster.sh +214 -0
  194. scientific_writer/.claude/skills/literature-review/SKILL.md +546 -0
  195. scientific_writer/.claude/skills/literature-review/assets/review_template.md +412 -0
  196. scientific_writer/.claude/skills/literature-review/references/citation_styles.md +166 -0
  197. scientific_writer/.claude/skills/literature-review/references/database_strategies.md +381 -0
  198. scientific_writer/.claude/skills/literature-review/scripts/generate_pdf.py +176 -0
  199. scientific_writer/.claude/skills/literature-review/scripts/search_databases.py +303 -0
  200. scientific_writer/.claude/skills/literature-review/scripts/verify_citations.py +222 -0
  201. scientific_writer/.claude/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
  202. scientific_writer/.claude/skills/markitdown/LICENSE.txt +22 -0
  203. scientific_writer/.claude/skills/markitdown/OPENROUTER_INTEGRATION.md +359 -0
  204. scientific_writer/.claude/skills/markitdown/QUICK_REFERENCE.md +309 -0
  205. scientific_writer/.claude/skills/markitdown/README.md +184 -0
  206. scientific_writer/.claude/skills/markitdown/SKILL.md +450 -0
  207. scientific_writer/.claude/skills/markitdown/SKILL_SUMMARY.md +307 -0
  208. scientific_writer/.claude/skills/markitdown/assets/example_usage.md +463 -0
  209. scientific_writer/.claude/skills/markitdown/references/api_reference.md +399 -0
  210. scientific_writer/.claude/skills/markitdown/references/file_formats.md +542 -0
  211. scientific_writer/.claude/skills/markitdown/scripts/batch_convert.py +228 -0
  212. scientific_writer/.claude/skills/markitdown/scripts/convert_literature.py +283 -0
  213. scientific_writer/.claude/skills/markitdown/scripts/convert_with_ai.py +243 -0
  214. scientific_writer/.claude/skills/paper-2-web/SKILL.md +455 -0
  215. scientific_writer/.claude/skills/paper-2-web/references/installation.md +141 -0
  216. scientific_writer/.claude/skills/paper-2-web/references/paper2poster.md +346 -0
  217. scientific_writer/.claude/skills/paper-2-web/references/paper2video.md +305 -0
  218. scientific_writer/.claude/skills/paper-2-web/references/paper2web.md +187 -0
  219. scientific_writer/.claude/skills/paper-2-web/references/usage_examples.md +436 -0
  220. scientific_writer/.claude/skills/peer-review/SKILL.md +375 -0
  221. scientific_writer/.claude/skills/peer-review/references/common_issues.md +552 -0
  222. scientific_writer/.claude/skills/peer-review/references/reporting_standards.md +290 -0
  223. scientific_writer/.claude/skills/research-grants/README.md +285 -0
  224. scientific_writer/.claude/skills/research-grants/SKILL.md +896 -0
  225. scientific_writer/.claude/skills/research-grants/assets/budget_justification_template.md +453 -0
  226. scientific_writer/.claude/skills/research-grants/assets/nih_specific_aims_template.md +166 -0
  227. scientific_writer/.claude/skills/research-grants/assets/nsf_project_summary_template.md +92 -0
  228. scientific_writer/.claude/skills/research-grants/references/broader_impacts.md +392 -0
  229. scientific_writer/.claude/skills/research-grants/references/darpa_guidelines.md +636 -0
  230. scientific_writer/.claude/skills/research-grants/references/doe_guidelines.md +586 -0
  231. scientific_writer/.claude/skills/research-grants/references/nih_guidelines.md +851 -0
  232. scientific_writer/.claude/skills/research-grants/references/nsf_guidelines.md +570 -0
  233. scientific_writer/.claude/skills/research-grants/references/specific_aims_guide.md +458 -0
  234. scientific_writer/.claude/skills/research-lookup/README.md +116 -0
  235. scientific_writer/.claude/skills/research-lookup/SKILL.md +443 -0
  236. scientific_writer/.claude/skills/research-lookup/examples.py +174 -0
  237. scientific_writer/.claude/skills/research-lookup/lookup.py +93 -0
  238. scientific_writer/.claude/skills/research-lookup/research_lookup.py +335 -0
  239. scientific_writer/.claude/skills/research-lookup/scripts/research_lookup.py +261 -0
  240. scientific_writer/.claude/skills/scholar-evaluation/SKILL.md +254 -0
  241. scientific_writer/.claude/skills/scholar-evaluation/references/evaluation_framework.md +663 -0
  242. scientific_writer/.claude/skills/scholar-evaluation/scripts/calculate_scores.py +378 -0
  243. scientific_writer/.claude/skills/scientific-critical-thinking/SKILL.md +530 -0
  244. scientific_writer/.claude/skills/scientific-critical-thinking/references/common_biases.md +364 -0
  245. scientific_writer/.claude/skills/scientific-critical-thinking/references/evidence_hierarchy.md +484 -0
  246. scientific_writer/.claude/skills/scientific-critical-thinking/references/experimental_design.md +496 -0
  247. scientific_writer/.claude/skills/scientific-critical-thinking/references/logical_fallacies.md +478 -0
  248. scientific_writer/.claude/skills/scientific-critical-thinking/references/scientific_method.md +169 -0
  249. scientific_writer/.claude/skills/scientific-critical-thinking/references/statistical_pitfalls.md +506 -0
  250. scientific_writer/.claude/skills/scientific-schematics/SKILL.md +2035 -0
  251. scientific_writer/.claude/skills/scientific-schematics/assets/block_diagram_template.tex +199 -0
  252. scientific_writer/.claude/skills/scientific-schematics/assets/circuit_template.tex +159 -0
  253. scientific_writer/.claude/skills/scientific-schematics/assets/flowchart_template.tex +161 -0
  254. scientific_writer/.claude/skills/scientific-schematics/assets/pathway_template.tex +162 -0
  255. scientific_writer/.claude/skills/scientific-schematics/assets/tikz_styles.tex +422 -0
  256. scientific_writer/.claude/skills/scientific-schematics/references/best_practices.md +562 -0
  257. scientific_writer/.claude/skills/scientific-schematics/references/diagram_types.md +637 -0
  258. scientific_writer/.claude/skills/scientific-schematics/references/python_libraries.md +791 -0
  259. scientific_writer/.claude/skills/scientific-schematics/references/tikz_guide.md +734 -0
  260. scientific_writer/.claude/skills/scientific-schematics/scripts/circuit_generator.py +307 -0
  261. scientific_writer/.claude/skills/scientific-schematics/scripts/compile_tikz.py +292 -0
  262. scientific_writer/.claude/skills/scientific-schematics/scripts/generate_flowchart.py +281 -0
  263. scientific_writer/.claude/skills/scientific-schematics/scripts/pathway_diagram.py +406 -0
  264. scientific_writer/.claude/skills/scientific-writing/SKILL.md +443 -0
  265. scientific_writer/.claude/skills/scientific-writing/references/citation_styles.md +720 -0
  266. scientific_writer/.claude/skills/scientific-writing/references/figures_tables.md +806 -0
  267. scientific_writer/.claude/skills/scientific-writing/references/imrad_structure.md +658 -0
  268. scientific_writer/.claude/skills/scientific-writing/references/reporting_guidelines.md +748 -0
  269. scientific_writer/.claude/skills/scientific-writing/references/writing_principles.md +824 -0
  270. scientific_writer/.claude/skills/treatment-plans/README.md +483 -0
  271. scientific_writer/.claude/skills/treatment-plans/SKILL.md +817 -0
  272. scientific_writer/.claude/skills/treatment-plans/assets/chronic_disease_management_plan.tex +636 -0
  273. scientific_writer/.claude/skills/treatment-plans/assets/general_medical_treatment_plan.tex +616 -0
  274. scientific_writer/.claude/skills/treatment-plans/assets/mental_health_treatment_plan.tex +745 -0
  275. scientific_writer/.claude/skills/treatment-plans/assets/pain_management_plan.tex +770 -0
  276. scientific_writer/.claude/skills/treatment-plans/assets/perioperative_care_plan.tex +724 -0
  277. scientific_writer/.claude/skills/treatment-plans/assets/quality_checklist.md +471 -0
  278. scientific_writer/.claude/skills/treatment-plans/assets/rehabilitation_treatment_plan.tex +727 -0
  279. scientific_writer/.claude/skills/treatment-plans/references/goal_setting_frameworks.md +411 -0
  280. scientific_writer/.claude/skills/treatment-plans/references/intervention_guidelines.md +507 -0
  281. scientific_writer/.claude/skills/treatment-plans/references/regulatory_compliance.md +476 -0
  282. scientific_writer/.claude/skills/treatment-plans/references/specialty_specific_guidelines.md +607 -0
  283. scientific_writer/.claude/skills/treatment-plans/references/treatment_plan_standards.md +456 -0
  284. scientific_writer/.claude/skills/treatment-plans/scripts/check_completeness.py +318 -0
  285. scientific_writer/.claude/skills/treatment-plans/scripts/generate_template.py +244 -0
  286. scientific_writer/.claude/skills/treatment-plans/scripts/timeline_generator.py +369 -0
  287. scientific_writer/.claude/skills/treatment-plans/scripts/validate_treatment_plan.py +367 -0
  288. scientific_writer/.claude/skills/venue-templates/SKILL.md +590 -0
  289. scientific_writer/.claude/skills/venue-templates/assets/grants/nih_specific_aims.tex +235 -0
  290. scientific_writer/.claude/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
  291. scientific_writer/.claude/skills/venue-templates/assets/journals/nature_article.tex +171 -0
  292. scientific_writer/.claude/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
  293. scientific_writer/.claude/skills/venue-templates/assets/journals/plos_one.tex +317 -0
  294. scientific_writer/.claude/skills/venue-templates/assets/posters/beamerposter_academic.tex +311 -0
  295. scientific_writer/.claude/skills/venue-templates/references/conferences_formatting.md +564 -0
  296. scientific_writer/.claude/skills/venue-templates/references/grants_requirements.md +787 -0
  297. scientific_writer/.claude/skills/venue-templates/references/journals_formatting.md +486 -0
  298. scientific_writer/.claude/skills/venue-templates/references/posters_guidelines.md +628 -0
  299. scientific_writer/.claude/skills/venue-templates/scripts/customize_template.py +206 -0
  300. scientific_writer/.claude/skills/venue-templates/scripts/query_template.py +260 -0
  301. scientific_writer/.claude/skills/venue-templates/scripts/validate_format.py +255 -0
  302. scientific_writer/__init__.py +1 -1
  303. scientific_writer/api.py +9 -5
  304. scientific_writer/cli.py +9 -5
  305. scientific_writer/core.py +28 -5
  306. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/METADATA +1 -1
  307. scientific_writer-2.2.3.dist-info/RECORD +312 -0
  308. scientific_writer-2.2.1.dist-info/RECORD +0 -11
  309. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/WHEEL +0 -0
  310. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/entry_points.txt +0 -0
  311. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/licenses/LICENSE +0 -0
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+ # Research Poster Guidelines
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+
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+ Comprehensive guidelines for creating effective academic research posters including sizing, layout, typography, and design best practices.
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+
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+ **Last Updated**: 2024
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+
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+ ---
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+
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+ ## Standard Poster Sizes
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+
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+ ### International Sizes (ISO 216)
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+
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+ | Size | Dimensions (mm) | Dimensions (inches) | Common Use |
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+ |------|----------------|---------------------|------------|
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+ | **A0** | 841 × 1189 | 33.1 × 46.8 | Most common international standard |
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+ | **A1** | 594 × 841 | 23.4 × 33.1 | Smaller conferences, travel-friendly |
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+ | **A2** | 420 × 594 | 16.5 × 23.4 | Mini posters, small venues |
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+
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+ ### US Sizes
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+
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+ | Size | Dimensions (inches) | Dimensions (mm) | Common Use |
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+ |------|-------------------|-----------------|------------|
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+ | **36" × 48"** | 36 × 48 | 914 × 1219 | Common US conference size (portrait) |
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+ | **42" × 56"** | 42 × 56 | 1067 × 1422 | Large format US posters |
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+ | **48" × 36"** | 48 × 36 | 1219 × 914 | Landscape orientation |
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+ | **48" × 96"** | 48 × 96 | 1219 × 2438 | Extra-wide format |
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+
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+ ### Other Common Sizes
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+
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+ | Size | Dimensions | Notes |
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+ |------|-----------|-------|
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+ | **90 cm × 120 cm** | 900 × 1200 mm / 35.4 × 47.2 in | Common in Europe |
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+ | **40" × 30"** | 1016 × 762 mm | Landscape format |
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+ | **3 ft × 4 ft** | 914 × 1219 mm / 36 × 48 in | Same as 36×48 |
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+
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+ ### Orientation
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+
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+ - **Portrait**: Most common (height > width)
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+ - Better for long visual flows (top to bottom)
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+ - Examples: A0, 36"×48"
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+ - **Landscape**: Less common but sometimes preferred
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+ - Better for wide content, timelines
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+ - Examples: 48"×36", 40"×30"
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+
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+ **Always verify**: Check conference specifications before designing!
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+
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+ ---
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+
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+ ## Typography and Font Sizes
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+
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+ ### Recommended Font Sizes by Distance
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+
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+ Posters are viewed from 3-6 feet (1-2 meters) away:
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+
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+ | Element | Size Range | Recommended |
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+ |---------|-----------|-------------|
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+ | **Title** | 60-85 pt | 72-85 pt |
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+ | **Author Names** | 48-60 pt | 54 pt |
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+ | **Affiliations** | 32-40 pt | 36 pt |
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+ | **Section Headers** | 36-48 pt | 42 pt |
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+ | **Body Text** | 24-32 pt | 28 pt |
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+ | **Figure Captions** | 20-24 pt | 22 pt |
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+ | **References** | 18-22 pt | 20 pt |
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+
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+ ### Font Families
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+
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+ **Sans-Serif (Recommended for Posters)**:
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+ - Arial
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+ - Helvetica
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+ - Calibri
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+ - Futura
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+ - Gill Sans
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+ - **Why**: Clean, readable at distance
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+
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+ **Serif (Use Sparingly)**:
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+ - Times New Roman
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+ - Georgia
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+ - Palatino
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+ - **When**: Body text if preferred, but sans-serif better for headers
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+
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+ **Monospace**:
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+ - Courier New
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+ - Consolas
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+ - **When**: Code snippets only
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+
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+ ### Typography Best Practices
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+
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+ 1. **Limit fonts**: Use 1-2 font families maximum
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+ 2. **Hierarchy**: Establish clear size hierarchy
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+ 3. **Weight**: Use bold for emphasis, not italics
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+ 4. **Alignment**: Left-align body text, center title
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+ 5. **Spacing**: Generous line spacing (1.2-1.5)
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+ 6. **Consistency**: Same fonts for similar elements
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+
95
+ ---
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+
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+ ## Layout and Design Principles
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+
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+ ### Grid-Based Layouts
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+
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+ **Column Structures**:
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+
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+ | Layout | Columns | Best For |
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+ |--------|---------|----------|
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+ | **Single Column** | 1 | Simple, linear flow; timeline posters |
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+ | **Two Column** | 2 | Most common; balanced layout |
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+ | **Three Column** | 3 | Dense content; multi-part studies |
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+ | **Four Column** | 4 | Very dense; avoid if possible |
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+
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+ **Recommended**: **2 or 3 columns** for most research posters
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+
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+ ### Visual Flow
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+
114
+ **Reading Order** (Western conventions):
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+ 1. Top to bottom
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+ 2. Left to right
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+ 3. Z-pattern or F-pattern
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+
119
+ **Section Ordering** (typical):
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+ ```
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+ +----------------------------------+
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+ | TITLE |
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+ | Authors, Affiliations |
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+ +----------------------------------+
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+ | Introduction | Results |
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+ | | |
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+ | Methods | Discussion |
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+ | | |
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+ | [Optional] | Conclusions |
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+ +----------------------------------+
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+ | References / QR Code |
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+ +----------------------------------+
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+ ```
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+
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+ ### Spacing and Margins
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+
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+ - **Outer margins**: 1-2 inches (2.5-5 cm) all sides
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+ - **Column spacing**: 0.5-1 inch (1.3-2.5 cm)
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+ - **Inter-section spacing**: 0.5-1 inch
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+ - **White space**: 30-40% of poster should be white space
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+
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+ **Avoid**: Dense, text-heavy layouts with minimal white space
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+
144
+ ---
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+
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+ ## Color Schemes
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+
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+ ### Colorblind-Safe Palettes
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+
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+ Use colorblind-friendly color combinations:
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+
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+ **Okabe-Ito Palette** (Recommended):
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+ - Orange: `#E69F00`
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+ - Sky Blue: `#56B4E9`
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+ - Bluish Green: `#009E73`
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+ - Yellow: `#F0E442`
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+ - Blue: `#0072B2`
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+ - Vermillion: `#D55E00`
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+ - Reddish Purple: `#CC79A7`
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+ - Black: `#000000`
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+ - Gray: `#999999`
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+
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+ **Viridis Palette** (sequential):
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+ - Good for heatmaps and gradients
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+ - Colorblind-safe and perceptually uniform
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+
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+ ### Color Usage Guidelines
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+
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+ **Background**:
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+ - **White or light gray**: Most common, professional
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+ - **Light colored**: Pale blue, beige (use cautiously)
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+ - **Avoid dark backgrounds**: Harder to read, expensive to print
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+
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+ **Text**:
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+ - **Dark on light**: Black or dark gray text on white/light backgrounds
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+ - **Contrast ratio**: At least 4.5:1 (WCAG AA standard)
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+
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+ **Accent Colors**:
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+ - Use 2-3 accent colors maximum
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+ - Section headers, key findings
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+ - Consistent throughout poster
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+
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+ **Figures**:
184
+ - Colorblind-safe palettes
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+ - Sufficient contrast
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+ - Test in grayscale
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+
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+ ### Color Contrast Tools
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+ - WebAIM Contrast Checker: https://webaim.org/resources/contrastchecker/
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+ - Coblis (Color Blindness Simulator): https://www.color-blindness.com/coblis-color-blindness-simulator/
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+
192
+ ---
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+
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+ ## Content Structure
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+
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+ ### Essential Sections
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+
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+ #### 1. Title Section
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+ - **Title**: Clear, specific, engaging
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+ - **Authors**: Names (underline presenting author)
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+ - **Affiliations**: Institutions, departments
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+ - **Logo**: Institutional logo (corner)
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+ - **Contact**: Email, QR code to paper/website
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+
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+ #### 2. Introduction/Background
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+ - **Purpose**: Context and motivation
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+ - **Length**: 100-200 words
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+ - **Include**:
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+ - Problem statement
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+ - Research gap
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+ - Objectives/hypothesis
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+
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+ #### 3. Methods
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+ - **Purpose**: How you did the study
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+ - **Format**:
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+ - Bullet points preferred
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+ - Flow diagram if complex
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+ - Key parameters
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+ - **Include**: Sample size, procedures, analysis
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+
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+ #### 4. Results
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+ - **Purpose**: What you found
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+ - **Format**: Primarily visual (figures, tables, charts)
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+ - **Include**:
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+ - Key findings (2-4 main results)
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+ - Statistical significance
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+ - Visual evidence
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+
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+ #### 5. Discussion/Conclusions
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+ - **Purpose**: What it means
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+ - **Length**: 100-200 words
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+ - **Include**:
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+ - Interpretation
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+ - Implications
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+ - Limitations
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+ - Future work
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+
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+ #### 6. References
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+ - **Format**: Small font, abbreviated citations
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+ - **Include**: Key citations only (5-10)
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+ - **Style**: Any consistent style
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+
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+ ### Optional Sections
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+ - **Abstract**: Sometimes included, often omitted
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+ - **Acknowledgments**: Funding, collaborators
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+ - **Future Work**: Next steps
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+
248
+ ---
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+
250
+ ## Visual Elements
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+
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+ ### Figures and Plots
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+
254
+ **Principles**:
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+ 1. **Simplify**: Remove clutter, emphasize key points
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+ 2. **Enlarge**: Make larger than in paper
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+ 3. **Label clearly**: Large axis labels, legends
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+ 4. **Standalone**: Each figure tells a complete story
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+ 5. **High resolution**: 300 dpi minimum
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+
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+ **Figure Types**:
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+ - **Photographs**: High quality, cropped appropriately
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+ - **Graphs**: Bar charts, line plots, scatter plots
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+ - **Heatmaps**: Use colorblind-safe colormaps
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+ - **Schematics**: Diagrams, flowcharts
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+ - **Tables**: Simple tables (complex tables → figure)
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+
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+ ### Tables
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+
270
+ **When to Use**:
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+ - Precise numerical values needed
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+ - Comparisons across conditions
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+ - Summary statistics
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+
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+ **Best Practices**:
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+ - **Keep simple**: 3-5 columns, 5-10 rows maximum
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+ - **Large fonts**: Same size as body text
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+ - **Clear headers**: Bold column/row headers
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+ - **Alternating rows**: Light shading for readability
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+ - **Minimal lines**: Horizontal lines only (no vertical)
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+
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+ ### Icons and Graphics
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+
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+ **Use**:
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+ - Icons for visual interest (methods, concepts)
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+ - Simple graphics to break text
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+ - Arrows to guide flow
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+
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+ **Sources**:
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+ - Noun Project: https://thenounproject.com/
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+ - BioRender: https://biorender.com/ (scientific illustrations)
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+ - Font Awesome: https://fontawesome.com/ (icons)
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+
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+ **Caution**: Don't overuse; maintain professionalism
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+
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+ ---
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+
298
+ ## LaTeX Poster Packages
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+
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+ ### beamerposter
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+
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+ **Description**: Extension of Beamer for posters
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+ **Best For**: Academic conferences, classic layout
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+ **Pros**:
305
+ - Familiar to Beamer users
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+ - Clean, professional appearance
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+ - Many themes available
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+
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+ **Cons**:
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+ - Less flexible than tikzposter
311
+ - Can be verbose
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+
313
+ **Template**: `assets/posters/beamerposter_academic.tex`
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+
315
+ **Example Usage**:
316
+ ```latex
317
+ \documentclass[final]{beamer}
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+ \usepackage[size=a0,scale=1.24]{beamerposter}
319
+ \usetheme{Berlin}
320
+ ```
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+
322
+ ---
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+
324
+ ### tikzposter
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+
326
+ **Description**: Modern poster package using TikZ
327
+ **Best For**: Colorful, modern designs
328
+ **Pros**:
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+ - Highly customizable
330
+ - Modern, attractive themes
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+ - Block-based layout
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+
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+ **Cons**:
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+ - Steeper learning curve
335
+ - Can be slow to compile
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+
337
+ **Template**: `assets/posters/tikzposter_research.tex`
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+
339
+ **Example Usage**:
340
+ ```latex
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+ \documentclass[25pt, a0paper, portrait]{tikzposter}
342
+ \usetheme{Autumn}
343
+ \usecolorstyle{Denmark}
344
+ ```
345
+
346
+ ---
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+
348
+ ### baposter
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+
350
+ **Description**: Box-and-poster system
351
+ **Best For**: Structured, multi-column layouts
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+ **Pros**:
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+ - Excellent column control
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+ - Header boxes, structured layout
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+ - Good for dense content
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+
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+ **Cons**:
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+ - Complex syntax
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+ - Less commonly used
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+
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+ **Template**: `assets/posters/baposter_conference.tex`
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+
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+ **Example Usage**:
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+ ```latex
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+ \documentclass[a0paper,portrait]{baposter}
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+ ```
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+
368
+ ---
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+
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+ ## Printing and File Preparation
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+
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+ ### File Format
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+
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+ **For Printing**:
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+ - **PDF**: Universal standard
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+ - **High resolution**: 300 dpi minimum, 600 dpi for photos
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+ - **Color space**: RGB for most printers (check with printer)
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+ - **Embed fonts**: Ensure all fonts embedded
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+ - **Flatten**: No transparency issues
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+
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+ ### Print Quality Checks
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+
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+ Before printing:
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+ 1. **Proofread**: Check for typos, errors
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+ 2. **Colors**: Check in print preview
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+ 3. **Resolution**: Zoom to 100%, check figure quality
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+ 4. **Margins**: Verify nothing cut off
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+ 5. **Test print**: Print small version (A4) to check layout
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+
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+ ### Print Providers
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+
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+ **Options**:
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+ 1. **University print shop**: Often cheapest, convenient
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+ 2. **FedEx Office**: Widely available
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+ 3. **Online services**:
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+ - Vistaprint
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+ - Printful
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+ - Academic Poster Printing (specialized)
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+
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+ **Cost**: Typically $50-150 for A0 glossy poster
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+
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+ ### Paper Types
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+
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+ | Paper Type | Description | Best For |
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+ |-----------|-------------|----------|
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+ | **Matte** | Non-reflective finish | Well-lit venues, minimal glare |
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+ | **Glossy** | Shiny, vibrant colors | Photos, colorful figures |
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+ | **Satin/Semi-gloss** | Between matte and glossy | Balanced option (recommended) |
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+ | **Fabric** | Wrinkle-resistant, rollable | Travel, re-use |
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+
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+ **Recommendation**: **Satin or matte** for most academic posters
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+
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+ ---
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+
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+ ## QR Codes
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+
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+ ### What to Include
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+
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+ Generate QR codes linking to:
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+ - **Paper PDF**: Published or preprint
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+ - **Supplementary materials**: Data, code, videos
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+ - **Personal website**: Lab or researcher page
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+ - **Video abstract**: 1-2 minute video summary
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+ - **Online version**: Interactive poster
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+
426
+ ### Placement
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+
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+ - **Common locations**:
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+ - Bottom right corner
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+ - Next to references
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+ - Near contact information
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+ - **Size**: 3-4 inches (7-10 cm) square
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+ - **Label**: "Scan for paper" or "More info"
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+
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+ ### QR Code Generators
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+ - QR Code Generator: https://www.qr-code-generator.com/
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+ - QRStuff: https://www.qrstuff.com/
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+ - LaTeX package: `qrcode` for generating in LaTeX
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+
440
+ ---
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+
442
+ ## Design Best Practices
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+
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+ ### Do's
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+
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+ ✓ **Use large fonts** (28pt+ for body text)
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+ ✓ **Keep text minimal** (30-40% of poster)
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+ ✓ **Use visuals** (60-70% figures, plots, images)
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+ ✓ **Tell a story** (clear narrative flow)
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+ ✓ **Colorblind-safe colors**
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+ ✓ **Test readability** (view from 6 feet away)
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+ ✓ **Include contact info** (email, QR code)
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+ ✓ **Proofread** (multiple times!)
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+
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+ ### Don'ts
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+
457
+ ✗ **Don't use small fonts** (<24pt body text)
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+ ✗ **Don't overcrowd** (leave white space)
459
+ ✗ **Don't use complex tables** (simplify or visualize)
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+ ✗ **Don't use full paragraphs** (use bullets)
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+ ✗ **Don't use many fonts** (1-2 max)
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+ ✗ **Don't use low-res images** (<300 dpi)
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+ ✗ **Don't use red-green contrasts** (colorblind issue)
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+ ✗ **Don't make it a paper** (posters ≠ papers)
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+
466
+ ---
467
+
468
+ ## Poster Presentation Tips
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+
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+ ### During the Poster Session
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+
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+ 1. **Stand by your poster**: Be available, engaged
473
+ 2. **Elevator pitch ready**: 1-2 minute summary prepared
474
+ 3. **Different depths**: Short version (1 min), medium (3 min), deep dive (10 min)
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+ 4. **Engage visitors**: Ask questions, invite discussion
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+ 5. **Business cards**: Have them ready
477
+ 6. **Notebook**: Record feedback, questions
478
+ 7. **Handouts**: Optional 1-page summary (with QR code)
479
+
480
+ ### Talking Through Your Poster
481
+
482
+ **30-second version**:
483
+ - What is the problem?
484
+ - What did you do?
485
+ - What did you find?
486
+
487
+ **2-minute version**:
488
+ - Background + motivation
489
+ - Methods (briefly)
490
+ - Key result (show main figure)
491
+ - Conclusion + implications
492
+
493
+ **5+ minute version**:
494
+ - Full walkthrough
495
+ - Address specific questions
496
+ - Discuss limitations, future work
497
+
498
+ ---
499
+
500
+ ## Accessibility Considerations
501
+
502
+ ### Visual Accessibility
503
+
504
+ 1. **Color contrast**: High contrast (4.5:1 minimum)
505
+ 2. **Colorblind-safe**: Use Okabe-Ito or similar palettes
506
+ 3. **Font size**: Large enough to read from distance
507
+ 4. **Font choice**: Clear, sans-serif fonts
508
+ 5. **Alt text**: Consider providing text description
509
+
510
+ ### Physical Accessibility
511
+
512
+ 1. **Mounting height**: Low enough for wheelchair users to read bottom
513
+ 2. **QR codes**: Provide alternative (short URL, handout)
514
+
515
+ ---
516
+
517
+ ## Checklist Before Printing
518
+
519
+ - [ ] Proofread all text (typos, grammar)
520
+ - [ ] Check author names and affiliations
521
+ - [ ] Verify all figures are high resolution (300+ dpi)
522
+ - [ ] Ensure colorblind-safe color schemes
523
+ - [ ] Test readability from 6 feet away (print small version)
524
+ - [ ] Verify poster dimensions match conference requirements
525
+ - [ ] Check that fonts are embedded in PDF
526
+ - [ ] Include contact information (email, QR code)
527
+ - [ ] Add institutional logo
528
+ - [ ] Verify references are accurate
529
+ - [ ] Ensure figures have clear labels and captions
530
+ - [ ] Check that layout is not too dense (adequate white space)
531
+ - [ ] Verify QR codes work (test scan)
532
+ - [ ] Confirm file is high-resolution PDF
533
+ - [ ] Get feedback from colleagues
534
+
535
+ ---
536
+
537
+ ## Example Poster Layouts
538
+
539
+ ### Layout 1: Two-Column (Recommended for Most)
540
+
541
+ ```
542
+ +----------------------------------------+
543
+ | TITLE |
544
+ | Authors & Affiliations |
545
+ +----------------------------------------+
546
+ | INTRO | RESULTS |
547
+ | | |
548
+ | METHODS | RESULTS (cont.) |
549
+ | | |
550
+ | | DISCUSSION/CONCLUSIONS |
551
+ +----------------------------------------+
552
+ | REFERENCES | QR CODE |
553
+ +----------------------------------------+
554
+ ```
555
+
556
+ ### Layout 2: Three-Column
557
+
558
+ ```
559
+ +---------------------------------------+
560
+ | TITLE |
561
+ | Authors & Affiliations |
562
+ +---------------------------------------+
563
+ | INTRO | RESULTS | DISCUSSION |
564
+ | | | |
565
+ | METHOD | RESULTS | CONCLUSIONS |
566
+ | | | |
567
+ | | RESULTS | FUTURE WORK |
568
+ +---------------------------------------+
569
+ | REFERENCES | QR CODE |
570
+ +---------------------------------------+
571
+ ```
572
+
573
+ ### Layout 3: Horizontal Flow
574
+
575
+ ```
576
+ +----------------------------------------+
577
+ | TITLE |
578
+ | Authors & Affiliations |
579
+ +----------------------------------------+
580
+ | INTRODUCTION | METHODS |
581
+ +----------------------------------------+
582
+ | RESULTS |
583
+ | (large figure spanning width) |
584
+ +----------------------------------------+
585
+ | DISCUSSION | CONCLUSIONS |
586
+ +----------------------------------------+
587
+ | REFERENCES | QR CODE |
588
+ +----------------------------------------+
589
+ ```
590
+
591
+ ---
592
+
593
+ ## Resources
594
+
595
+ ### LaTeX Templates
596
+ - `assets/posters/beamerposter_academic.tex`
597
+ - `assets/posters/tikzposter_research.tex`
598
+ - `assets/posters/baposter_conference.tex`
599
+
600
+ ### Online Resources
601
+ - Better Posters Blog: https://betterposters.blogspot.com/
602
+ - Colorblind Safe Palettes: https://colorbrewer2.org/
603
+ - BioRender (scientific illustrations): https://biorender.com/
604
+ - Poster Design Guide (Colin Purrington): https://colinpurrington.com/tips/poster-design/
605
+
606
+ ### Tools
607
+ - **Inkscape**: Free vector graphics editor
608
+ - **PowerPoint**: Surprisingly popular for posters
609
+ - **Illustrator**: Professional design tool
610
+ - **LaTeX**: Best for reproducibility, version control
611
+
612
+ ---
613
+
614
+ ## Summary
615
+
616
+ **Key Takeaways**:
617
+
618
+ 1. **Size**: Verify conference requirements (typically A0 or 36"×48")
619
+ 2. **Fonts**: Large (28pt+ body, 72pt+ title)
620
+ 3. **Layout**: 2-3 columns, generous white space
621
+ 4. **Visuals**: 60-70% visual content
622
+ 5. **Colors**: Colorblind-safe, high contrast
623
+ 6. **Content**: Tell a story, keep text minimal
624
+ 7. **Quality**: 300+ dpi, test print
625
+ 8. **Accessibility**: Readable from distance, clear hierarchy
626
+
627
+ **Remember**: A poster is **not a paper** - it's a visual summary designed to spark conversations!
628
+