scientific-writer 2.2.1__py3-none-any.whl → 2.2.3__py3-none-any.whl

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  1. scientific_writer/.claude/WRITER.md +748 -0
  2. scientific_writer/.claude/settings.local.json +30 -0
  3. scientific_writer/.claude/skills/citation-management/SKILL.md +1046 -0
  4. scientific_writer/.claude/skills/citation-management/assets/bibtex_template.bib +264 -0
  5. scientific_writer/.claude/skills/citation-management/assets/citation_checklist.md +386 -0
  6. scientific_writer/.claude/skills/citation-management/references/bibtex_formatting.md +908 -0
  7. scientific_writer/.claude/skills/citation-management/references/citation_validation.md +794 -0
  8. scientific_writer/.claude/skills/citation-management/references/google_scholar_search.md +725 -0
  9. scientific_writer/.claude/skills/citation-management/references/metadata_extraction.md +870 -0
  10. scientific_writer/.claude/skills/citation-management/references/pubmed_search.md +839 -0
  11. scientific_writer/.claude/skills/citation-management/scripts/doi_to_bibtex.py +204 -0
  12. scientific_writer/.claude/skills/citation-management/scripts/extract_metadata.py +569 -0
  13. scientific_writer/.claude/skills/citation-management/scripts/format_bibtex.py +349 -0
  14. scientific_writer/.claude/skills/citation-management/scripts/search_google_scholar.py +282 -0
  15. scientific_writer/.claude/skills/citation-management/scripts/search_pubmed.py +398 -0
  16. scientific_writer/.claude/skills/citation-management/scripts/validate_citations.py +497 -0
  17. scientific_writer/.claude/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
  18. scientific_writer/.claude/skills/clinical-reports/README.md +236 -0
  19. scientific_writer/.claude/skills/clinical-reports/SKILL.md +1088 -0
  20. scientific_writer/.claude/skills/clinical-reports/assets/case_report_template.md +352 -0
  21. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
  22. scientific_writer/.claude/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
  23. scientific_writer/.claude/skills/clinical-reports/assets/consult_note_template.md +305 -0
  24. scientific_writer/.claude/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
  25. scientific_writer/.claude/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
  26. scientific_writer/.claude/skills/clinical-reports/assets/history_physical_template.md +305 -0
  27. scientific_writer/.claude/skills/clinical-reports/assets/lab_report_template.md +309 -0
  28. scientific_writer/.claude/skills/clinical-reports/assets/pathology_report_template.md +249 -0
  29. scientific_writer/.claude/skills/clinical-reports/assets/quality_checklist.md +338 -0
  30. scientific_writer/.claude/skills/clinical-reports/assets/radiology_report_template.md +318 -0
  31. scientific_writer/.claude/skills/clinical-reports/assets/soap_note_template.md +253 -0
  32. scientific_writer/.claude/skills/clinical-reports/references/case_report_guidelines.md +570 -0
  33. scientific_writer/.claude/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
  34. scientific_writer/.claude/skills/clinical-reports/references/data_presentation.md +530 -0
  35. scientific_writer/.claude/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
  36. scientific_writer/.claude/skills/clinical-reports/references/medical_terminology.md +588 -0
  37. scientific_writer/.claude/skills/clinical-reports/references/patient_documentation.md +744 -0
  38. scientific_writer/.claude/skills/clinical-reports/references/peer_review_standards.md +585 -0
  39. scientific_writer/.claude/skills/clinical-reports/references/regulatory_compliance.md +577 -0
  40. scientific_writer/.claude/skills/clinical-reports/scripts/check_deidentification.py +346 -0
  41. scientific_writer/.claude/skills/clinical-reports/scripts/compliance_checker.py +78 -0
  42. scientific_writer/.claude/skills/clinical-reports/scripts/extract_clinical_data.py +102 -0
  43. scientific_writer/.claude/skills/clinical-reports/scripts/format_adverse_events.py +103 -0
  44. scientific_writer/.claude/skills/clinical-reports/scripts/generate_report_template.py +163 -0
  45. scientific_writer/.claude/skills/clinical-reports/scripts/terminology_validator.py +133 -0
  46. scientific_writer/.claude/skills/clinical-reports/scripts/validate_case_report.py +334 -0
  47. scientific_writer/.claude/skills/clinical-reports/scripts/validate_trial_report.py +89 -0
  48. scientific_writer/.claude/skills/document-skills/docx/LICENSE.txt +30 -0
  49. scientific_writer/.claude/skills/document-skills/docx/SKILL.md +197 -0
  50. scientific_writer/.claude/skills/document-skills/docx/docx-js.md +350 -0
  51. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  52. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  53. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  54. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  55. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  56. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  57. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  58. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  59. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  60. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  61. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  62. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  63. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  64. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  65. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  66. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  67. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  68. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  69. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  70. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  71. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  72. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  73. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  74. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  75. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  76. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  77. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  78. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  79. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  80. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  81. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  82. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
  83. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  84. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  85. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  86. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  87. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  88. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  89. scientific_writer/.claude/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  90. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
  91. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
  92. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
  93. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
  94. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
  95. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
  96. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
  97. scientific_writer/.claude/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
  98. scientific_writer/.claude/skills/document-skills/docx/ooxml.md +610 -0
  99. scientific_writer/.claude/skills/document-skills/docx/scripts/__init__.py +1 -0
  100. scientific_writer/.claude/skills/document-skills/docx/scripts/document.py +1276 -0
  101. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
  102. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
  103. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
  104. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
  105. scientific_writer/.claude/skills/document-skills/docx/scripts/templates/people.xml +3 -0
  106. scientific_writer/.claude/skills/document-skills/docx/scripts/utilities.py +374 -0
  107. scientific_writer/.claude/skills/document-skills/pdf/LICENSE.txt +30 -0
  108. scientific_writer/.claude/skills/document-skills/pdf/SKILL.md +294 -0
  109. scientific_writer/.claude/skills/document-skills/pdf/forms.md +205 -0
  110. scientific_writer/.claude/skills/document-skills/pdf/reference.md +612 -0
  111. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
  112. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
  113. scientific_writer/.claude/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
  114. scientific_writer/.claude/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
  115. scientific_writer/.claude/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
  116. scientific_writer/.claude/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
  117. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
  118. scientific_writer/.claude/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
  119. scientific_writer/.claude/skills/document-skills/pptx/LICENSE.txt +30 -0
  120. scientific_writer/.claude/skills/document-skills/pptx/SKILL.md +484 -0
  121. scientific_writer/.claude/skills/document-skills/pptx/html2pptx.md +625 -0
  122. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  123. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  124. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  125. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  126. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  127. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  128. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
  129. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
  130. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  131. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  132. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
  133. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
  134. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
  135. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
  136. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
  137. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
  138. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
  139. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
  140. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
  141. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
  142. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
  143. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
  144. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
  145. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
  146. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
  147. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
  148. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
  149. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
  150. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
  151. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
  152. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
  153. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
  154. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
  155. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
  156. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
  157. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
  158. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
  159. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
  160. scientific_writer/.claude/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
  161. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/pack.py +159 -0
  162. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/unpack.py +29 -0
  163. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validate.py +69 -0
  164. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +15 -0
  165. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/base.py +951 -0
  166. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +274 -0
  167. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +315 -0
  168. scientific_writer/.claude/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +279 -0
  169. scientific_writer/.claude/skills/document-skills/pptx/ooxml.md +427 -0
  170. scientific_writer/.claude/skills/document-skills/pptx/scripts/html2pptx.js +979 -0
  171. scientific_writer/.claude/skills/document-skills/pptx/scripts/inventory.py +1020 -0
  172. scientific_writer/.claude/skills/document-skills/pptx/scripts/rearrange.py +231 -0
  173. scientific_writer/.claude/skills/document-skills/pptx/scripts/replace.py +385 -0
  174. scientific_writer/.claude/skills/document-skills/pptx/scripts/thumbnail.py +450 -0
  175. scientific_writer/.claude/skills/document-skills/xlsx/LICENSE.txt +30 -0
  176. scientific_writer/.claude/skills/document-skills/xlsx/SKILL.md +289 -0
  177. scientific_writer/.claude/skills/document-skills/xlsx/recalc.py +178 -0
  178. scientific_writer/.claude/skills/hypothesis-generation/SKILL.md +155 -0
  179. scientific_writer/.claude/skills/hypothesis-generation/assets/hypothesis_output_template.md +302 -0
  180. scientific_writer/.claude/skills/hypothesis-generation/references/experimental_design_patterns.md +327 -0
  181. scientific_writer/.claude/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +196 -0
  182. scientific_writer/.claude/skills/hypothesis-generation/references/literature_search_strategies.md +505 -0
  183. scientific_writer/.claude/skills/latex-posters/README.md +417 -0
  184. scientific_writer/.claude/skills/latex-posters/SKILL.md +919 -0
  185. scientific_writer/.claude/skills/latex-posters/assets/baposter_template.tex +257 -0
  186. scientific_writer/.claude/skills/latex-posters/assets/beamerposter_template.tex +244 -0
  187. scientific_writer/.claude/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
  188. scientific_writer/.claude/skills/latex-posters/assets/tikzposter_template.tex +251 -0
  189. scientific_writer/.claude/skills/latex-posters/references/latex_poster_packages.md +745 -0
  190. scientific_writer/.claude/skills/latex-posters/references/poster_content_guide.md +748 -0
  191. scientific_writer/.claude/skills/latex-posters/references/poster_design_principles.md +806 -0
  192. scientific_writer/.claude/skills/latex-posters/references/poster_layout_design.md +900 -0
  193. scientific_writer/.claude/skills/latex-posters/scripts/review_poster.sh +214 -0
  194. scientific_writer/.claude/skills/literature-review/SKILL.md +546 -0
  195. scientific_writer/.claude/skills/literature-review/assets/review_template.md +412 -0
  196. scientific_writer/.claude/skills/literature-review/references/citation_styles.md +166 -0
  197. scientific_writer/.claude/skills/literature-review/references/database_strategies.md +381 -0
  198. scientific_writer/.claude/skills/literature-review/scripts/generate_pdf.py +176 -0
  199. scientific_writer/.claude/skills/literature-review/scripts/search_databases.py +303 -0
  200. scientific_writer/.claude/skills/literature-review/scripts/verify_citations.py +222 -0
  201. scientific_writer/.claude/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
  202. scientific_writer/.claude/skills/markitdown/LICENSE.txt +22 -0
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  204. scientific_writer/.claude/skills/markitdown/QUICK_REFERENCE.md +309 -0
  205. scientific_writer/.claude/skills/markitdown/README.md +184 -0
  206. scientific_writer/.claude/skills/markitdown/SKILL.md +450 -0
  207. scientific_writer/.claude/skills/markitdown/SKILL_SUMMARY.md +307 -0
  208. scientific_writer/.claude/skills/markitdown/assets/example_usage.md +463 -0
  209. scientific_writer/.claude/skills/markitdown/references/api_reference.md +399 -0
  210. scientific_writer/.claude/skills/markitdown/references/file_formats.md +542 -0
  211. scientific_writer/.claude/skills/markitdown/scripts/batch_convert.py +228 -0
  212. scientific_writer/.claude/skills/markitdown/scripts/convert_literature.py +283 -0
  213. scientific_writer/.claude/skills/markitdown/scripts/convert_with_ai.py +243 -0
  214. scientific_writer/.claude/skills/paper-2-web/SKILL.md +455 -0
  215. scientific_writer/.claude/skills/paper-2-web/references/installation.md +141 -0
  216. scientific_writer/.claude/skills/paper-2-web/references/paper2poster.md +346 -0
  217. scientific_writer/.claude/skills/paper-2-web/references/paper2video.md +305 -0
  218. scientific_writer/.claude/skills/paper-2-web/references/paper2web.md +187 -0
  219. scientific_writer/.claude/skills/paper-2-web/references/usage_examples.md +436 -0
  220. scientific_writer/.claude/skills/peer-review/SKILL.md +375 -0
  221. scientific_writer/.claude/skills/peer-review/references/common_issues.md +552 -0
  222. scientific_writer/.claude/skills/peer-review/references/reporting_standards.md +290 -0
  223. scientific_writer/.claude/skills/research-grants/README.md +285 -0
  224. scientific_writer/.claude/skills/research-grants/SKILL.md +896 -0
  225. scientific_writer/.claude/skills/research-grants/assets/budget_justification_template.md +453 -0
  226. scientific_writer/.claude/skills/research-grants/assets/nih_specific_aims_template.md +166 -0
  227. scientific_writer/.claude/skills/research-grants/assets/nsf_project_summary_template.md +92 -0
  228. scientific_writer/.claude/skills/research-grants/references/broader_impacts.md +392 -0
  229. scientific_writer/.claude/skills/research-grants/references/darpa_guidelines.md +636 -0
  230. scientific_writer/.claude/skills/research-grants/references/doe_guidelines.md +586 -0
  231. scientific_writer/.claude/skills/research-grants/references/nih_guidelines.md +851 -0
  232. scientific_writer/.claude/skills/research-grants/references/nsf_guidelines.md +570 -0
  233. scientific_writer/.claude/skills/research-grants/references/specific_aims_guide.md +458 -0
  234. scientific_writer/.claude/skills/research-lookup/README.md +116 -0
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  236. scientific_writer/.claude/skills/research-lookup/examples.py +174 -0
  237. scientific_writer/.claude/skills/research-lookup/lookup.py +93 -0
  238. scientific_writer/.claude/skills/research-lookup/research_lookup.py +335 -0
  239. scientific_writer/.claude/skills/research-lookup/scripts/research_lookup.py +261 -0
  240. scientific_writer/.claude/skills/scholar-evaluation/SKILL.md +254 -0
  241. scientific_writer/.claude/skills/scholar-evaluation/references/evaluation_framework.md +663 -0
  242. scientific_writer/.claude/skills/scholar-evaluation/scripts/calculate_scores.py +378 -0
  243. scientific_writer/.claude/skills/scientific-critical-thinking/SKILL.md +530 -0
  244. scientific_writer/.claude/skills/scientific-critical-thinking/references/common_biases.md +364 -0
  245. scientific_writer/.claude/skills/scientific-critical-thinking/references/evidence_hierarchy.md +484 -0
  246. scientific_writer/.claude/skills/scientific-critical-thinking/references/experimental_design.md +496 -0
  247. scientific_writer/.claude/skills/scientific-critical-thinking/references/logical_fallacies.md +478 -0
  248. scientific_writer/.claude/skills/scientific-critical-thinking/references/scientific_method.md +169 -0
  249. scientific_writer/.claude/skills/scientific-critical-thinking/references/statistical_pitfalls.md +506 -0
  250. scientific_writer/.claude/skills/scientific-schematics/SKILL.md +2035 -0
  251. scientific_writer/.claude/skills/scientific-schematics/assets/block_diagram_template.tex +199 -0
  252. scientific_writer/.claude/skills/scientific-schematics/assets/circuit_template.tex +159 -0
  253. scientific_writer/.claude/skills/scientific-schematics/assets/flowchart_template.tex +161 -0
  254. scientific_writer/.claude/skills/scientific-schematics/assets/pathway_template.tex +162 -0
  255. scientific_writer/.claude/skills/scientific-schematics/assets/tikz_styles.tex +422 -0
  256. scientific_writer/.claude/skills/scientific-schematics/references/best_practices.md +562 -0
  257. scientific_writer/.claude/skills/scientific-schematics/references/diagram_types.md +637 -0
  258. scientific_writer/.claude/skills/scientific-schematics/references/python_libraries.md +791 -0
  259. scientific_writer/.claude/skills/scientific-schematics/references/tikz_guide.md +734 -0
  260. scientific_writer/.claude/skills/scientific-schematics/scripts/circuit_generator.py +307 -0
  261. scientific_writer/.claude/skills/scientific-schematics/scripts/compile_tikz.py +292 -0
  262. scientific_writer/.claude/skills/scientific-schematics/scripts/generate_flowchart.py +281 -0
  263. scientific_writer/.claude/skills/scientific-schematics/scripts/pathway_diagram.py +406 -0
  264. scientific_writer/.claude/skills/scientific-writing/SKILL.md +443 -0
  265. scientific_writer/.claude/skills/scientific-writing/references/citation_styles.md +720 -0
  266. scientific_writer/.claude/skills/scientific-writing/references/figures_tables.md +806 -0
  267. scientific_writer/.claude/skills/scientific-writing/references/imrad_structure.md +658 -0
  268. scientific_writer/.claude/skills/scientific-writing/references/reporting_guidelines.md +748 -0
  269. scientific_writer/.claude/skills/scientific-writing/references/writing_principles.md +824 -0
  270. scientific_writer/.claude/skills/treatment-plans/README.md +483 -0
  271. scientific_writer/.claude/skills/treatment-plans/SKILL.md +817 -0
  272. scientific_writer/.claude/skills/treatment-plans/assets/chronic_disease_management_plan.tex +636 -0
  273. scientific_writer/.claude/skills/treatment-plans/assets/general_medical_treatment_plan.tex +616 -0
  274. scientific_writer/.claude/skills/treatment-plans/assets/mental_health_treatment_plan.tex +745 -0
  275. scientific_writer/.claude/skills/treatment-plans/assets/pain_management_plan.tex +770 -0
  276. scientific_writer/.claude/skills/treatment-plans/assets/perioperative_care_plan.tex +724 -0
  277. scientific_writer/.claude/skills/treatment-plans/assets/quality_checklist.md +471 -0
  278. scientific_writer/.claude/skills/treatment-plans/assets/rehabilitation_treatment_plan.tex +727 -0
  279. scientific_writer/.claude/skills/treatment-plans/references/goal_setting_frameworks.md +411 -0
  280. scientific_writer/.claude/skills/treatment-plans/references/intervention_guidelines.md +507 -0
  281. scientific_writer/.claude/skills/treatment-plans/references/regulatory_compliance.md +476 -0
  282. scientific_writer/.claude/skills/treatment-plans/references/specialty_specific_guidelines.md +607 -0
  283. scientific_writer/.claude/skills/treatment-plans/references/treatment_plan_standards.md +456 -0
  284. scientific_writer/.claude/skills/treatment-plans/scripts/check_completeness.py +318 -0
  285. scientific_writer/.claude/skills/treatment-plans/scripts/generate_template.py +244 -0
  286. scientific_writer/.claude/skills/treatment-plans/scripts/timeline_generator.py +369 -0
  287. scientific_writer/.claude/skills/treatment-plans/scripts/validate_treatment_plan.py +367 -0
  288. scientific_writer/.claude/skills/venue-templates/SKILL.md +590 -0
  289. scientific_writer/.claude/skills/venue-templates/assets/grants/nih_specific_aims.tex +235 -0
  290. scientific_writer/.claude/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
  291. scientific_writer/.claude/skills/venue-templates/assets/journals/nature_article.tex +171 -0
  292. scientific_writer/.claude/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
  293. scientific_writer/.claude/skills/venue-templates/assets/journals/plos_one.tex +317 -0
  294. scientific_writer/.claude/skills/venue-templates/assets/posters/beamerposter_academic.tex +311 -0
  295. scientific_writer/.claude/skills/venue-templates/references/conferences_formatting.md +564 -0
  296. scientific_writer/.claude/skills/venue-templates/references/grants_requirements.md +787 -0
  297. scientific_writer/.claude/skills/venue-templates/references/journals_formatting.md +486 -0
  298. scientific_writer/.claude/skills/venue-templates/references/posters_guidelines.md +628 -0
  299. scientific_writer/.claude/skills/venue-templates/scripts/customize_template.py +206 -0
  300. scientific_writer/.claude/skills/venue-templates/scripts/query_template.py +260 -0
  301. scientific_writer/.claude/skills/venue-templates/scripts/validate_format.py +255 -0
  302. scientific_writer/__init__.py +1 -1
  303. scientific_writer/api.py +9 -5
  304. scientific_writer/cli.py +9 -5
  305. scientific_writer/core.py +28 -5
  306. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/METADATA +1 -1
  307. scientific_writer-2.2.3.dist-info/RECORD +312 -0
  308. scientific_writer-2.2.1.dist-info/RECORD +0 -11
  309. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/WHEEL +0 -0
  310. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/entry_points.txt +0 -0
  311. {scientific_writer-2.2.1.dist-info → scientific_writer-2.2.3.dist-info}/licenses/LICENSE +0 -0
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1
+ # Treatment Plan Quality Assurance Checklist
2
+
3
+ ## Overview
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+
5
+ Use this checklist to ensure treatment plans meet professional standards for completeness, quality, safety, and regulatory compliance. Review each section before finalizing the plan.
6
+
7
+ ---
8
+
9
+ ## Section 1: Completeness - Required Components
10
+
11
+ ### ☐ Patient Information
12
+ - [ ] Patient identifier (de-identified if sharing)
13
+ - [ ] Age range (not exact date of birth)
14
+ - [ ] Sex and relevant demographics
15
+ - [ ] Date of plan creation
16
+ - [ ] Provider name and credentials
17
+ - [ ] Facility/practice name
18
+ - [ ] HIPAA de-identification notice included
19
+
20
+ ### ☐ Diagnosis and Assessment
21
+ - [ ] Primary diagnosis clearly stated
22
+ - [ ] ICD-10 code(s) included
23
+ - [ ] Secondary diagnoses and comorbidities listed
24
+ - [ ] Disease severity/staging documented
25
+ - [ ] Baseline functional status assessed
26
+ - [ ] Risk stratification performed (if applicable)
27
+
28
+ ### ☐ Treatment Goals
29
+ - [ ] Short-term goals present (1-3 months)
30
+ - [ ] Long-term goals present (6-12 months)
31
+ - [ ] Goals meet SMART criteria (see Section 2)
32
+ - [ ] Patient-centered goals included
33
+ - [ ] Goals are prioritized or organized
34
+
35
+ ### ☐ Interventions
36
+ - [ ] Pharmacological interventions specified
37
+ - [ ] Non-pharmacological interventions included
38
+ - [ ] Procedural interventions or referrals noted
39
+ - [ ] Each intervention has clear rationale
40
+ - [ ] Evidence-based or guideline-concordant
41
+
42
+ ### ☐ Timeline and Schedule
43
+ - [ ] Treatment phases with durations defined
44
+ - [ ] Appointment frequency specified
45
+ - [ ] Milestone assessments scheduled
46
+ - [ ] Expected total treatment duration stated
47
+
48
+ ### ☐ Monitoring Parameters
49
+ - [ ] Clinical outcomes to track identified
50
+ - [ ] Baseline values documented
51
+ - [ ] Target values specified
52
+ - [ ] Monitoring frequency defined
53
+ - [ ] Assessment tools/scales named
54
+
55
+ ### ☐ Expected Outcomes
56
+ - [ ] Primary outcome measures stated
57
+ - [ ] Success criteria defined
58
+ - [ ] Timeline for improvement indicated
59
+ - [ ] Criteria for treatment modification noted
60
+
61
+ ### ☐ Follow-up Plan
62
+ - [ ] Next appointment scheduled
63
+ - [ ] Follow-up frequency specified
64
+ - [ ] Communication plan outlined
65
+ - [ ] Emergency contact procedures included
66
+
67
+ ### ☐ Patient Education
68
+ - [ ] Condition education documented
69
+ - [ ] Self-management skills training noted
70
+ - [ ] Warning signs communicated
71
+ - [ ] Resources and support listed
72
+
73
+ ### ☐ Risk Mitigation and Safety
74
+ - [ ] Potential adverse effects identified
75
+ - [ ] Safety monitoring plan included
76
+ - [ ] Emergency procedures outlined
77
+ - [ ] Complication prevention addressed
78
+
79
+ ### ☐ Signature and Date
80
+ - [ ] Provider signature line
81
+ - [ ] Provider name and credentials
82
+ - [ ] Date of plan
83
+ - [ ] Patient acknowledgment (if applicable)
84
+
85
+ ---
86
+
87
+ ## Section 2: SMART Goals Quality
88
+
89
+ For each treatment goal, verify it meets SMART criteria:
90
+
91
+ ### ☐ Specific
92
+ - [ ] Goal clearly defines what will be accomplished
93
+ - [ ] No vague language (e.g., "improve", "better")
94
+ - [ ] Specific outcome stated
95
+
96
+ **Example**: "Reduce HbA1c from 8.5% to <7%" ✓
97
+ **Not**: "Improve diabetes control" ✗
98
+
99
+ ### ☐ Measurable
100
+ - [ ] Quantifiable metric or observable criterion included
101
+ - [ ] Baseline value documented
102
+ - [ ] Target value specified
103
+
104
+ **Example**: "Walk 300 feet with walker independently" ✓
105
+ **Not**: "Walk further" ✗
106
+
107
+ ### ☐ Achievable
108
+ - [ ] Realistic given patient's condition and capabilities
109
+ - [ ] Resources available to support goal
110
+ - [ ] Timeframe is reasonable
111
+ - [ ] Treatment efficacy supports goal
112
+
113
+ **Example**: "Reduce pain from 7/10 to 4/10 in 6 weeks" ✓
114
+ **Not**: "Eliminate all pain in 1 week" ✗
115
+
116
+ ### ☐ Relevant
117
+ - [ ] Aligned with patient values and priorities
118
+ - [ ] Clinically meaningful
119
+ - [ ] Addresses patient's functional limitations
120
+ - [ ] Integrated with overall treatment objectives
121
+
122
+ **Example**: "Return to work with modifications within 3 months" ✓
123
+ **Not**: "Lab value improvement" (if patient doesn't care about it) ✗
124
+
125
+ ### ☐ Time-bound
126
+ - [ ] Specific deadline or timeframe stated
127
+ - [ ] Reassessment interval defined
128
+ - [ ] Action frequency specified (if applicable)
129
+
130
+ **Example**: "Within 8 weeks" or "By month 3" ✓
131
+ **Not**: "Eventually" or "Soon" ✗
132
+
133
+ ---
134
+
135
+ ## Section 3: Clinical Quality
136
+
137
+ ### ☐ Evidence-Based Practice
138
+ - [ ] Interventions based on current evidence
139
+ - [ ] Clinical practice guidelines followed
140
+ - [ ] Guideline deviations explained and justified
141
+ - [ ] Literature or evidence cited (if formal plan)
142
+
143
+ ### ☐ Medication Documentation (if applicable)
144
+ - [ ] Generic drug names used
145
+ - [ ] Specific dose, route, frequency documented
146
+ - [ ] Indication/rationale provided for each medication
147
+ - [ ] Adverse effects to monitor noted
148
+ - [ ] Drug interactions considered
149
+ - [ ] Titration plan included if applicable
150
+
151
+ ### ☐ Assessment Tools
152
+ - [ ] Validated assessment tools used when available
153
+ - [ ] Tools appropriate for condition (PHQ-9, FIM, Berg, etc.)
154
+ - [ ] Baseline scores documented
155
+ - [ ] Target scores specified
156
+ - [ ] Reassessment schedule defined
157
+
158
+ ### ☐ Multidisciplinary Coordination (if applicable)
159
+ - [ ] Roles of team members defined
160
+ - [ ] Communication plan among providers specified
161
+ - [ ] Care transitions addressed
162
+ - [ ] Specialist recommendations integrated
163
+
164
+ ### ☐ Preventive Care Integration
165
+ - [ ] Age-appropriate screening included
166
+ - [ ] Vaccination schedule noted
167
+ - [ ] Lifestyle counseling documented
168
+ - [ ] Health maintenance addressed
169
+
170
+ ---
171
+
172
+ ## Section 4: Patient-Centered Care
173
+
174
+ ### ☐ Shared Decision-Making
175
+ - [ ] Patient preferences documented
176
+ - [ ] Treatment options discussed
177
+ - [ ] Risks and benefits explained
178
+ - [ ] Patient values incorporated into goals
179
+ - [ ] Alternative treatments considered
180
+
181
+ ### ☐ Health Literacy
182
+ - [ ] Language appropriate for patient understanding
183
+ - [ ] Medical jargon explained or avoided
184
+ - [ ] Teach-back method used or planned
185
+ - [ ] Written materials at appropriate reading level
186
+
187
+ ### ☐ Cultural Competence
188
+ - [ ] Cultural beliefs and practices considered
189
+ - [ ] Language barriers addressed (interpreter if needed)
190
+ - [ ] Cultural adaptations made when appropriate
191
+ - [ ] Religious/spiritual preferences respected
192
+
193
+ ### ☐ Social Determinants of Health
194
+ - [ ] Social needs screened (food, housing, transportation)
195
+ - [ ] Barriers to care identified
196
+ - [ ] Community resources provided
197
+ - [ ] Financial concerns addressed (medication costs, etc.)
198
+
199
+ ### ☐ Patient Engagement
200
+ - [ ] Patient actively involved in goal-setting
201
+ - [ ] Self-management support provided
202
+ - [ ] Patient education tailored to individual
203
+ - [ ] Follow-up preferences considered
204
+
205
+ ---
206
+
207
+ ## Section 5: Safety and Risk Management
208
+
209
+ ### ☐ Medication Safety
210
+ - [ ] Allergy history documented
211
+ - [ ] Polypharmacy reviewed (deprescribing considered)
212
+ - [ ] High-risk medications monitored appropriately
213
+ - [ ] Drug-drug interactions checked
214
+ - [ ] Renal/hepatic dosing adjustments made if needed
215
+
216
+ ### ☐ Fall Prevention (if relevant)
217
+ - [ ] Fall risk assessed
218
+ - [ ] Fall prevention strategies included
219
+ - [ ] Environmental modifications recommended
220
+ - [ ] Assistive devices prescribed
221
+
222
+ ### ☐ Infection Prevention (if relevant)
223
+ - [ ] Immunizations up to date
224
+ - [ ] Prophylactic antibiotics if indicated
225
+ - [ ] Infection signs and symptoms patient education
226
+
227
+ ### ☐ Emergency Preparedness
228
+ - [ ] Emergency warning signs clearly listed
229
+ - [ ] When to call 911 specified
230
+ - [ ] When to call provider defined
231
+ - [ ] Emergency contact numbers provided
232
+
233
+ ### ☐ Suicide/Violence Risk (mental health plans)
234
+ - [ ] Risk assessment documented
235
+ - [ ] Safety plan created if ideation present
236
+ - [ ] Means restriction addressed
237
+ - [ ] Crisis resources provided (988 lifeline)
238
+ - [ ] Follow-up frequency appropriate for risk level
239
+
240
+ ### ☐ Opioid Safety (pain management plans)
241
+ - [ ] Opioid risk assessment completed (ORT, SOAPP)
242
+ - [ ] Informed consent discussion documented
243
+ - [ ] Treatment agreement signed
244
+ - [ ] PDMP checked
245
+ - [ ] Naloxone co-prescribed
246
+ - [ ] UDS plan included
247
+
248
+ ---
249
+
250
+ ## Section 6: Regulatory Compliance
251
+
252
+ ### ☐ HIPAA Compliance
253
+ - [ ] Protected health information (PHI) safeguarded
254
+ - [ ] De-identification per Safe Harbor method (if sharing)
255
+ - [ ] All 18 HIPAA identifiers removed (if de-identified)
256
+ - [ ] Minimum necessary principle followed
257
+
258
+ ### ☐ Informed Consent
259
+ - [ ] Consent discussion documented
260
+ - [ ] Patient understanding verified
261
+ - [ ] Risks and benefits explained
262
+ - [ ] Alternative treatments discussed
263
+ - [ ] Patient agreement documented
264
+
265
+ ### ☐ Medical Necessity
266
+ - [ ] Treatment medically necessary for diagnosis
267
+ - [ ] Interventions appropriate for severity
268
+ - [ ] Evidence supports treatment choices
269
+ - [ ] Frequency and duration justified
270
+
271
+ ### ☐ Billing and Coding
272
+ - [ ] ICD-10 diagnosis codes included
273
+ - [ ] CPT procedure codes (if procedures planned)
274
+ - [ ] Documentation supports billing level
275
+ - [ ] Medical necessity for services demonstrated
276
+
277
+ ### ☐ Quality Measure Support
278
+ - [ ] Elements support quality reporting (HEDIS, MIPS)
279
+ - [ ] Chronic disease management protocols followed
280
+ - [ ] Preventive care documented
281
+ - [ ] Patient safety indicators addressed
282
+
283
+ ### ☐ Specialty-Specific Regulations
284
+ - [ ] 42 CFR Part 2 compliance (if substance use disorder treatment)
285
+ - [ ] CDC opioid guidelines followed (if opioid prescription)
286
+ - [ ] Joint Commission standards met (if applicable)
287
+ - [ ] State-specific requirements addressed
288
+
289
+ ---
290
+
291
+ ## Section 7: Documentation Standards
292
+
293
+ ### ☐ Clarity and Precision
294
+ - [ ] Professional medical terminology used appropriately
295
+ - [ ] Abbreviations defined on first use
296
+ - [ ] No ambiguous language
297
+ - [ ] Specific rather than vague descriptions
298
+
299
+ ### ☐ Accuracy
300
+ - [ ] Factually correct information
301
+ - [ ] Current evidence-based recommendations
302
+ - [ ] Correct medication dosing and frequencies
303
+ - [ ] Proper ICD-10 and CPT coding
304
+
305
+ ### ☐ Organization
306
+ - [ ] Logical flow and structure
307
+ - [ ] Consistent formatting
308
+ - [ ] Easy to locate key information
309
+ - [ ] Headings and sections clearly labeled
310
+
311
+ ### ☐ Legibility (if handwritten or hybrid)
312
+ - [ ] Handwriting legible
313
+ - [ ] No unclear abbreviations
314
+ - [ ] Typed portions clear
315
+ - [ ] Signatures legible with printed name
316
+
317
+ ### ☐ Authentication
318
+ - [ ] Provider name clearly stated
319
+ - [ ] Credentials included
320
+ - [ ] Date of plan present
321
+ - [ ] Signature obtained (electronic or handwritten)
322
+
323
+ ---
324
+
325
+ ## Section 8: Special Considerations by Plan Type
326
+
327
+ ### For General Medical Plans:
328
+ - [ ] Chronic disease management protocols followed
329
+ - [ ] Guideline-based targets used (HbA1c, BP, lipids)
330
+ - [ ] Medication regimen optimized
331
+ - [ ] Comorbidities addressed
332
+ - [ ] Preventive care integrated
333
+
334
+ ### For Rehabilitation Plans:
335
+ - [ ] Functional assessments with validated tools (FIM, Berg)
336
+ - [ ] Impairment, activity, and participation goals included
337
+ - [ ] Therapy frequency and duration specified
338
+ - [ ] Home exercise program documented
339
+ - [ ] DME and environmental modifications listed
340
+ - [ ] Discharge criteria defined
341
+
342
+ ### For Mental Health Plans:
343
+ - [ ] DSM-5 diagnostic criteria met
344
+ - [ ] Symptom severity assessed (PHQ-9, GAD-7, etc.)
345
+ - [ ] Suicide/violence risk assessed
346
+ - [ ] Safety plan created (if indicated)
347
+ - [ ] Evidence-based psychotherapy specified
348
+ - [ ] Medication trials and responses documented
349
+ - [ ] Functional and recovery-oriented goals included
350
+
351
+ ### For Chronic Disease Management Plans:
352
+ - [ ] All active conditions prioritized
353
+ - [ ] Medication synergies identified
354
+ - [ ] Polypharmacy addressed
355
+ - [ ] Care coordination plan clear
356
+ - [ ] Registry/population health integration noted
357
+ - [ ] Transition management included
358
+
359
+ ### For Perioperative Plans:
360
+ - [ ] Preoperative risk assessment (RCRI, ASA, Caprini)
361
+ - [ ] Medical optimization documented
362
+ - [ ] ERAS elements included (if applicable)
363
+ - [ ] Postoperative milestones defined
364
+ - [ ] Discharge criteria specified
365
+ - [ ] VTE prophylaxis plan included
366
+
367
+ ### For Pain Management Plans:
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+ - [ ] Comprehensive pain assessment (location, quality, intensity, impact)
369
+ - [ ] Pain type classified (nociceptive, neuropathic, nociplastic)
370
+ - [ ] Multimodal analgesia approach
371
+ - [ ] Opioid risk assessment (if opioids considered)
372
+ - [ ] Functional goals emphasized (not just pain scores)
373
+ - [ ] Psychological screening and intervention included
374
+ - [ ] CDC opioid guidelines followed (if prescribing)
375
+
376
+ ---
377
+
378
+ ## Section 9: Final Review
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+
380
+ ### ☐ Proofreading
381
+ - [ ] Spelling and grammar checked
382
+ - [ ] No typos or errors
383
+ - [ ] Consistent terminology throughout
384
+ - [ ] Patient name correct throughout (if not de-identified)
385
+
386
+ ### ☐ Completeness Verification
387
+ - [ ] All placeholder text replaced with patient-specific information
388
+ - [ ] All bracketed [fields] customized
389
+ - [ ] No "TBD" or "to be completed" items remaining
390
+ - [ ] All required sections complete
391
+
392
+ ### ☐ Quality Assurance
393
+ - [ ] Plan reviewed by provider
394
+ - [ ] Peer review completed (if applicable)
395
+ - [ ] Compliance verification done
396
+ - [ ] Automated checks run (if available scripts used)
397
+
398
+ ### ☐ Patient Review Preparation
399
+ - [ ] Patient-friendly summary prepared (if needed)
400
+ - [ ] Patient education materials gathered
401
+ - [ ] Consent forms ready for signature
402
+ - [ ] Questions anticipated and prepared to address
403
+
404
+ ---
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+
406
+ ## Scoring and Interpretation
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+
408
+ **Total Items**: ~150 (varies by plan type)
409
+
410
+ ### Scoring:
411
+ - Count number of checked items
412
+ - Calculate percentage: (Checked / Total) × 100
413
+
414
+ ### Interpretation:
415
+ - **95-100%**: Excellent - Plan meets highest quality standards
416
+ - **85-94%**: Good - Plan is high quality with minor gaps
417
+ - **70-84%**: Acceptable - Plan is adequate but has areas needing improvement
418
+ - **<70%**: Needs Improvement - Significant gaps in quality or compliance
419
+
420
+ ### Critical Items (Must Have):
421
+ The following items are critical and must be present:
422
+ - ✓ Patient identifier and de-identification notice
423
+ - ✓ Primary diagnosis with ICD-10 code
424
+ - ✓ At least 3 SMART goals
425
+ - ✓ Interventions with rationales
426
+ - ✓ Monitoring plan
427
+ - ✓ Follow-up plan
428
+ - ✓ Patient education
429
+ - ✓ Safety/risk mitigation
430
+ - ✓ Emergency procedures
431
+ - ✓ Provider signature
432
+
433
+ If any critical item is missing, plan should not be finalized until corrected.
434
+
435
+ ---
436
+
437
+ ## Usage Instructions
438
+
439
+ 1. **Review each section** systematically
440
+ 2. **Check boxes** as criteria are met
441
+ 3. **Note deficiencies** for correction
442
+ 4. **Calculate score** to assess overall quality
443
+ 5. **Address gaps** before finalizing
444
+ 6. **Document review** with reviewer name and date
445
+
446
+ **Reviewer**: \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_
447
+
448
+ **Date Reviewed**: \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_
449
+
450
+ **Score**: \_\_\_\_\_% (\_\_\_\_ items checked / \_\_\_\_ total items)
451
+
452
+ **Status**:
453
+ - [ ] Approved for use
454
+ - [ ] Approved with minor revisions
455
+ - [ ] Requires significant revision
456
+ - [ ] Not approved
457
+
458
+ **Comments/Recommendations**:
459
+
460
+ \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_
461
+
462
+ \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_
463
+
464
+ \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_
465
+
466
+ ---
467
+
468
+ **Document Version**: 1.0
469
+ **Last Updated**: January 2025
470
+ **Next Review**: Annually or with guideline updates
471
+