python-microscopy 25.11.20__cp313-cp313-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1278) hide show
  1. PYME/Acquire/ActionManager.py +450 -0
  2. PYME/Acquire/ExecTools.py +235 -0
  3. PYME/Acquire/Hardware/AAOptoelectronics/MDS.py +175 -0
  4. PYME/Acquire/Hardware/AAOptoelectronics/__init__.py +0 -0
  5. PYME/Acquire/Hardware/ARCoptix/__init__.py +0 -0
  6. PYME/Acquire/Hardware/ARCoptix/lcdriver.py +149 -0
  7. PYME/Acquire/Hardware/ARCoptix/lcserver32.py +123 -0
  8. PYME/Acquire/Hardware/AndorIXon/AndorCam.py +1095 -0
  9. PYME/Acquire/Hardware/AndorIXon/AndorControlFrame.py +312 -0
  10. PYME/Acquire/Hardware/AndorIXon/AndorIXon.py +737 -0
  11. PYME/Acquire/Hardware/AndorIXon/__init__.py +27 -0
  12. PYME/Acquire/Hardware/AndorNeo/AndorNeo.py +644 -0
  13. PYME/Acquire/Hardware/AndorNeo/AndorNeoControlFrame.py +161 -0
  14. PYME/Acquire/Hardware/AndorNeo/AndorZyla.py +761 -0
  15. PYME/Acquire/Hardware/AndorNeo/SDK3.py +307 -0
  16. PYME/Acquire/Hardware/AndorNeo/SDK3Cam.py +171 -0
  17. PYME/Acquire/Hardware/AndorNeo/ZylaControlPanel.py +105 -0
  18. PYME/Acquire/Hardware/AndorNeo/__init__.py +22 -0
  19. PYME/Acquire/Hardware/AndorNeo/parseAtdebug.py +46 -0
  20. PYME/Acquire/Hardware/AndorNeo/plotTimings.py +73 -0
  21. PYME/Acquire/Hardware/AndorNeo/testNeo.py +62 -0
  22. PYME/Acquire/Hardware/Camera.py +1199 -0
  23. PYME/Acquire/Hardware/CameraSkeleton.py +642 -0
  24. PYME/Acquire/Hardware/Coherent/OBIS.py +147 -0
  25. PYME/Acquire/Hardware/Coherent/Sapphire.py +162 -0
  26. PYME/Acquire/Hardware/Coherent/__init__.py +0 -0
  27. PYME/Acquire/Hardware/DMDGui.py +198 -0
  28. PYME/Acquire/Hardware/DigiData/DigiData.py +95 -0
  29. PYME/Acquire/Hardware/DigiData/DigiDataClient.py +30 -0
  30. PYME/Acquire/Hardware/DigiData/RemoteDigiData.py +51 -0
  31. PYME/Acquire/Hardware/DigiData/__init__.py +24 -0
  32. PYME/Acquire/Hardware/DigiData/axDD132x.py +348 -0
  33. PYME/Acquire/Hardware/EMCCDTheory.py +41 -0
  34. PYME/Acquire/Hardware/ExciterWheel.py +167 -0
  35. PYME/Acquire/Hardware/FilterWheel.py +184 -0
  36. PYME/Acquire/Hardware/FocCorr.py +106 -0
  37. PYME/Acquire/Hardware/FocCorrR.py +196 -0
  38. PYME/Acquire/Hardware/FrFilter.py +51 -0
  39. PYME/Acquire/Hardware/GCS/GCS_DLL.py +370 -0
  40. PYME/Acquire/Hardware/GCS/__init__.py +0 -0
  41. PYME/Acquire/Hardware/GCS/gcs.py +210 -0
  42. PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuDCAM.py +662 -0
  43. PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuORCA.py +602 -0
  44. PYME/Acquire/Hardware/HamamatsuDCAM/Hamamatsu_control_panel.py +54 -0
  45. PYME/Acquire/Hardware/HamamatsuDCAM/__init__.py +23 -0
  46. PYME/Acquire/Hardware/LaserControlFrame.py +160 -0
  47. PYME/Acquire/Hardware/MPBCommunications/MPBCW.py +132 -0
  48. PYME/Acquire/Hardware/MPBCommunications/__init__.py +0 -0
  49. PYME/Acquire/Hardware/Mercury/Mercury.py +269 -0
  50. PYME/Acquire/Hardware/Mercury/PI_Mercury_GCS_DLL.py +857 -0
  51. PYME/Acquire/Hardware/Mercury/__init__.py +22 -0
  52. PYME/Acquire/Hardware/Mercury/mercuryStepper.py +203 -0
  53. PYME/Acquire/Hardware/Mercury/mercuryStepperGCS.py +281 -0
  54. PYME/Acquire/Hardware/NikonTE2000.py +68 -0
  55. PYME/Acquire/Hardware/NikonTi.py +214 -0
  56. PYME/Acquire/Hardware/NikonTiGUI.py +81 -0
  57. PYME/Acquire/Hardware/OrielCornerstone.py +125 -0
  58. PYME/Acquire/Hardware/PM100USB.py +51 -0
  59. PYME/Acquire/Hardware/Piezos/__init__.py +22 -0
  60. PYME/Acquire/Hardware/Piezos/base_piezo.py +108 -0
  61. PYME/Acquire/Hardware/Piezos/offsetPiezo.py +162 -0
  62. PYME/Acquire/Hardware/Piezos/offsetPiezoREST.py +308 -0
  63. PYME/Acquire/Hardware/Piezos/piezo_c867.py +486 -0
  64. PYME/Acquire/Hardware/Piezos/piezo_e255.py +68 -0
  65. PYME/Acquire/Hardware/Piezos/piezo_e662.py +61 -0
  66. PYME/Acquire/Hardware/Piezos/piezo_e709.py +434 -0
  67. PYME/Acquire/Hardware/Piezos/piezo_e816.py +452 -0
  68. PYME/Acquire/Hardware/Piezos/piezo_e816_corr.py +70 -0
  69. PYME/Acquire/Hardware/Piezos/piezo_e816_dll.py +518 -0
  70. PYME/Acquire/Hardware/Piezos/piezo_e816b.py +70 -0
  71. PYME/Acquire/Hardware/Piezos/piezo_pipython_gcs.py +560 -0
  72. PYME/Acquire/Hardware/Piezos/piezo_test.py +55 -0
  73. PYME/Acquire/Hardware/Simulator/EmpiricalHist.py +273 -0
  74. PYME/Acquire/Hardware/Simulator/__init__.py +22 -0
  75. PYME/Acquire/Hardware/Simulator/dSimControl.py +961 -0
  76. PYME/Acquire/Hardware/Simulator/fakeCam.py +651 -0
  77. PYME/Acquire/Hardware/Simulator/fakePiezo.py +95 -0
  78. PYME/Acquire/Hardware/Simulator/fluor.py +336 -0
  79. PYME/Acquire/Hardware/Simulator/illuminate.cp313-win_amd64.dll.a +0 -0
  80. PYME/Acquire/Hardware/Simulator/illuminate.cp313-win_amd64.pyd +0 -0
  81. PYME/Acquire/Hardware/Simulator/illuminate.pyx +93 -0
  82. PYME/Acquire/Hardware/Simulator/lasersliders.py +90 -0
  83. PYME/Acquire/Hardware/Simulator/rend_im.py +446 -0
  84. PYME/Acquire/Hardware/Simulator/setup.py +69 -0
  85. PYME/Acquire/Hardware/Simulator/simcontrol.py +348 -0
  86. PYME/Acquire/Hardware/Simulator/simui_wx.py +794 -0
  87. PYME/Acquire/Hardware/Tango/__init__.py +0 -0
  88. PYME/Acquire/Hardware/Tango/marzhauser_tango.py +583 -0
  89. PYME/Acquire/Hardware/TiLightCrafter.py +388 -0
  90. PYME/Acquire/Hardware/__init__.py +22 -0
  91. PYME/Acquire/Hardware/aotf.py +271 -0
  92. PYME/Acquire/Hardware/arclampshutterpanel.py +71 -0
  93. PYME/Acquire/Hardware/cameraSoftwareBuffer.py +215 -0
  94. PYME/Acquire/Hardware/camera_noise.py +270 -0
  95. PYME/Acquire/Hardware/ccdAdjPanel.py +188 -0
  96. PYME/Acquire/Hardware/ccdCalibrator.py +161 -0
  97. PYME/Acquire/Hardware/cobaltLaser.py +108 -0
  98. PYME/Acquire/Hardware/cobaltLaser561.py +94 -0
  99. PYME/Acquire/Hardware/comports.py +26 -0
  100. PYME/Acquire/Hardware/driftTrackGUI.py +488 -0
  101. PYME/Acquire/Hardware/driftTracking.py +595 -0
  102. PYME/Acquire/Hardware/fakeShutters.py +52 -0
  103. PYME/Acquire/Hardware/focusKeys.py +204 -0
  104. PYME/Acquire/Hardware/focus_locks/__init__.py +0 -0
  105. PYME/Acquire/Hardware/focus_locks/reflection_focus_lock.py +684 -0
  106. PYME/Acquire/Hardware/frZStage.py +117 -0
  107. PYME/Acquire/Hardware/fw102.py +38 -0
  108. PYME/Acquire/Hardware/ids_peak_cam.py +561 -0
  109. PYME/Acquire/Hardware/ioslave.py +305 -0
  110. PYME/Acquire/Hardware/lasers.py +292 -0
  111. PYME/Acquire/Hardware/matchboxLaser.py +58 -0
  112. PYME/Acquire/Hardware/microscope_adapter.py +104 -0
  113. PYME/Acquire/Hardware/mpd_picosecond_delayer.py +395 -0
  114. PYME/Acquire/Hardware/multiview.py +287 -0
  115. PYME/Acquire/Hardware/olympusix81.py +59 -0
  116. PYME/Acquire/Hardware/pco/__init__.py +0 -0
  117. PYME/Acquire/Hardware/pco/pco_cam.py +348 -0
  118. PYME/Acquire/Hardware/pco/pco_edge_42_lt.py +34 -0
  119. PYME/Acquire/Hardware/pco/pco_sdk.py +1645 -0
  120. PYME/Acquire/Hardware/pco/pco_sdk_cam.py +518 -0
  121. PYME/Acquire/Hardware/pco/pco_sdk_cam_control_panel.py +54 -0
  122. PYME/Acquire/Hardware/phoxxLaser.py +199 -0
  123. PYME/Acquire/Hardware/phoxxLaserOLD.py +242 -0
  124. PYME/Acquire/Hardware/priorLumen.py +102 -0
  125. PYME/Acquire/Hardware/priorarclampshutter.py +52 -0
  126. PYME/Acquire/Hardware/setup.py +50 -0
  127. PYME/Acquire/Hardware/spacenav.py +148 -0
  128. PYME/Acquire/Hardware/splitter.py +394 -0
  129. PYME/Acquire/Hardware/thorlabsPiezo.py +98 -0
  130. PYME/Acquire/Hardware/thorlabs_cam.py +136 -0
  131. PYME/Acquire/Hardware/thorlabs_mff_flipper.py +400 -0
  132. PYME/Acquire/Hardware/toptica_ibeam.py +51 -0
  133. PYME/Acquire/Hardware/uc480/AndorControlFrame.py +308 -0
  134. PYME/Acquire/Hardware/uc480/__init__.py +27 -0
  135. PYME/Acquire/Hardware/uc480/uCam480.py +695 -0
  136. PYME/Acquire/Hardware/uc480/uc480.py +189 -0
  137. PYME/Acquire/Hardware/uc480/uc480Deprecated.py +87 -0
  138. PYME/Acquire/Hardware/uc480/uc480_h.py +767 -0
  139. PYME/Acquire/Hardware/uc480/uc480_h_gen.py +62 -0
  140. PYME/Acquire/Hardware/uc480/ucCamControlFrame.py +83 -0
  141. PYME/Acquire/Hardware/ueye.py +702 -0
  142. PYME/Acquire/PYMEAcquire.py +186 -0
  143. PYME/Acquire/Protocols/DMDMFM.py +74 -0
  144. PYME/Acquire/Protocols/__init__.py +22 -0
  145. PYME/Acquire/Protocols/darkCalibrate.py +56 -0
  146. PYME/Acquire/Protocols/dual671_470.py +45 -0
  147. PYME/Acquire/Protocols/dual671_488.py +46 -0
  148. PYME/Acquire/Protocols/gainCal.py +53 -0
  149. PYME/Acquire/Protocols/htsms-cal-psf.py +32 -0
  150. PYME/Acquire/Protocols/htsms-cal-registration.py +52 -0
  151. PYME/Acquire/Protocols/htsms-flow.py +29 -0
  152. PYME/Acquire/Protocols/htsms-staggered.py +31 -0
  153. PYME/Acquire/Protocols/htsms-tile.py +68 -0
  154. PYME/Acquire/Protocols/htsms-two-color.py +29 -0
  155. PYME/Acquire/Protocols/htsms-widefield.py +32 -0
  156. PYME/Acquire/Protocols/paint671.py +61 -0
  157. PYME/Acquire/Protocols/photoconversion.py +52 -0
  158. PYME/Acquire/Protocols/photoconversion2.py +55 -0
  159. PYME/Acquire/Protocols/prebleach488.py +70 -0
  160. PYME/Acquire/Protocols/prebleach490.py +69 -0
  161. PYME/Acquire/Protocols/prebleach561.py +72 -0
  162. PYME/Acquire/Protocols/prebleach561NeomEos2.py +70 -0
  163. PYME/Acquire/Protocols/prebleach561NeomEos2ND1.py +70 -0
  164. PYME/Acquire/Protocols/prebleach642.py +70 -0
  165. PYME/Acquire/Protocols/prebleach671.py +69 -0
  166. PYME/Acquire/Protocols/prebleach671ND1.py +58 -0
  167. PYME/Acquire/Protocols/prebleach671ND2.py +57 -0
  168. PYME/Acquire/Protocols/prebleach671Neo.py +69 -0
  169. PYME/Acquire/Protocols/recover671.py +62 -0
  170. PYME/Acquire/Protocols/sequence642_488.py +85 -0
  171. PYME/Acquire/Protocols/sequence642_561.py +87 -0
  172. PYME/Acquire/Protocols/shiftfield.py +198 -0
  173. PYME/Acquire/Protocols/simul488.py +59 -0
  174. PYME/Acquire/Protocols/simul642.py +63 -0
  175. PYME/Acquire/Protocols/simul642HTSMS.py +63 -0
  176. PYME/Acquire/Protocols/simulPA.py +37 -0
  177. PYME/Acquire/Protocols/simulSIM.py +76 -0
  178. PYME/Acquire/Protocols/simulStep.py +62 -0
  179. PYME/Acquire/Protocols/spdscan.py +178 -0
  180. PYME/Acquire/Protocols/standard470.py +45 -0
  181. PYME/Acquire/Protocols/standard488.py +47 -0
  182. PYME/Acquire/Protocols/standard671.py +48 -0
  183. PYME/Acquire/Protocols/standard671_no532.py +47 -0
  184. PYME/Acquire/Protocols/standardArclamp.py +46 -0
  185. PYME/Acquire/Protocols/strip_tile.py +204 -0
  186. PYME/Acquire/Protocols/tile.py +204 -0
  187. PYME/Acquire/Protocols/tile3D.py +192 -0
  188. PYME/Acquire/Protocols/tile671.py +190 -0
  189. PYME/Acquire/Protocols/tile_triggered.py +189 -0
  190. PYME/Acquire/Scripts/init.py +232 -0
  191. PYME/Acquire/Scripts/init_N1_Ti_Exeter_ZIx.py +374 -0
  192. PYME/Acquire/Scripts/init_N2_Ti_Zyla_lasers.py +290 -0
  193. PYME/Acquire/Scripts/init_Neo.py +266 -0
  194. PYME/Acquire/Scripts/init_NeoSim.py +159 -0
  195. PYME/Acquire/Scripts/init_TIRF.py +232 -0
  196. PYME/Acquire/Scripts/init_TIRF_Neo.py +242 -0
  197. PYME/Acquire/Scripts/init_TIRF_NeoO.py +241 -0
  198. PYME/Acquire/Scripts/init_TIRF_onecam.py +233 -0
  199. PYME/Acquire/Scripts/init_Ti.py +257 -0
  200. PYME/Acquire/Scripts/init_UOA_n.py +256 -0
  201. PYME/Acquire/Scripts/init_UOA_n2.py +246 -0
  202. PYME/Acquire/Scripts/init_Y1.py +249 -0
  203. PYME/Acquire/Scripts/init_Zyla.py +260 -0
  204. PYME/Acquire/Scripts/init_drift_tracking.py +80 -0
  205. PYME/Acquire/Scripts/init_emccd_basic.py +277 -0
  206. PYME/Acquire/Scripts/init_htsms.py +277 -0
  207. PYME/Acquire/Scripts/init_htsms_focus_lock.py +132 -0
  208. PYME/Acquire/Scripts/init_micrpi.py +45 -0
  209. PYME/Acquire/Scripts/init_orca.py +70 -0
  210. PYME/Acquire/Scripts/init_pco.py +49 -0
  211. PYME/Acquire/Scripts/init_rev.py +74 -0
  212. PYME/Acquire/Scripts/init_sim100.py +169 -0
  213. PYME/Acquire/Scripts/init_sim103.py +169 -0
  214. PYME/Acquire/Scripts/init_sim2.py +211 -0
  215. PYME/Acquire/Scripts/init_sim50.py +169 -0
  216. PYME/Acquire/Scripts/init_sim75.py +169 -0
  217. PYME/Acquire/Scripts/init_sim_drift_tracking.py +166 -0
  218. PYME/Acquire/Scripts/init_sim_htsms.py +224 -0
  219. PYME/Acquire/Scripts/init_sim_htsms_n.py +233 -0
  220. PYME/Acquire/Scripts/init_sim_main.py +229 -0
  221. PYME/Acquire/Scripts/init_sim_min.py +197 -0
  222. PYME/Acquire/Scripts/init_sim_rem.py +176 -0
  223. PYME/Acquire/Scripts/init_smi1.py +110 -0
  224. PYME/Acquire/Scripts/init_spectro.py +78 -0
  225. PYME/Acquire/Scripts/init_spim.py +116 -0
  226. PYME/Acquire/Scripts/init_thorcam.py +62 -0
  227. PYME/Acquire/Scripts/init_twophoton.py +112 -0
  228. PYME/Acquire/Scripts/init_uc480.py +262 -0
  229. PYME/Acquire/Scripts/init_ueye.py +261 -0
  230. PYME/Acquire/SpoolController.py +958 -0
  231. PYME/Acquire/Utils/MultiPointScanner.py +80 -0
  232. PYME/Acquire/Utils/__init__.py +13 -0
  233. PYME/Acquire/Utils/failsafe.py +157 -0
  234. PYME/Acquire/Utils/fastTiler.py +153 -0
  235. PYME/Acquire/Utils/pointScanner.py +496 -0
  236. PYME/Acquire/Utils/sarcSpacing.py +86 -0
  237. PYME/Acquire/Utils/strip_tiler.py +93 -0
  238. PYME/Acquire/Utils/tiler.py +464 -0
  239. PYME/Acquire/Utils/vibrationAnalysis.py +65 -0
  240. PYME/Acquire/__init__.py +44 -0
  241. PYME/Acquire/acquire_client.py +90 -0
  242. PYME/Acquire/acquire_server.py +316 -0
  243. PYME/Acquire/acquirebase.py +139 -0
  244. PYME/Acquire/acquiremainframe.py +716 -0
  245. PYME/Acquire/acquirewx.py +61 -0
  246. PYME/Acquire/acquisition_base.py +148 -0
  247. PYME/Acquire/actions.py +209 -0
  248. PYME/Acquire/autofocus.py +54 -0
  249. PYME/Acquire/eventLog.py +95 -0
  250. PYME/Acquire/event_loop.py +119 -0
  251. PYME/Acquire/frameWrangler.py +530 -0
  252. PYME/Acquire/htsms/__init__.py +8 -0
  253. PYME/Acquire/htsms/rule_ui.py +970 -0
  254. PYME/Acquire/htsms/rule_ui_v2.py +573 -0
  255. PYME/Acquire/htsms/tweeter.py +222 -0
  256. PYME/Acquire/microscope.py +1050 -0
  257. PYME/Acquire/positionTracker.py +181 -0
  258. PYME/Acquire/protocol.py +299 -0
  259. PYME/Acquire/protocol_acquisition.py +404 -0
  260. PYME/Acquire/sampleInformation.py +591 -0
  261. PYME/Acquire/sampleInformationDjangoDirect.py +446 -0
  262. PYME/Acquire/setup.py +52 -0
  263. PYME/Acquire/stackSettings.py +295 -0
  264. PYME/Acquire/stage_leveling.py +285 -0
  265. PYME/Acquire/ui/AnalysisSettingsUI.py +184 -0
  266. PYME/Acquire/ui/HDFSpoolFrame.py +584 -0
  267. PYME/Acquire/ui/__init__.py +0 -0
  268. PYME/Acquire/ui/actionUI.py +892 -0
  269. PYME/Acquire/ui/focus_lock_gui.py +149 -0
  270. PYME/Acquire/ui/intensity_trace.py +143 -0
  271. PYME/Acquire/ui/intsliders.py +222 -0
  272. PYME/Acquire/ui/lasersliders.py +329 -0
  273. PYME/Acquire/ui/mpd_picosecond_delay_panel.py +69 -0
  274. PYME/Acquire/ui/multiview_select.py +77 -0
  275. PYME/Acquire/ui/positionUI.py +519 -0
  276. PYME/Acquire/ui/preflight.py +58 -0
  277. PYME/Acquire/ui/scanner_panel.py +41 -0
  278. PYME/Acquire/ui/selectCameraPanel.py +46 -0
  279. PYME/Acquire/ui/seqdialog.py +501 -0
  280. PYME/Acquire/ui/splashScreen.py +175 -0
  281. PYME/Acquire/ui/spool_panel.py +830 -0
  282. PYME/Acquire/ui/tile_panel.py +556 -0
  283. PYME/Acquire/ui/tilesettingsui.py +91 -0
  284. PYME/Acquire/ui/voxelSizeDialog.py +149 -0
  285. PYME/Acquire/webui/__init__.py +36 -0
  286. PYME/Acquire/webui/ipy.py +361 -0
  287. PYME/Acquire/webui/static/css/pyme-bootstrap.css +9908 -0
  288. PYME/Acquire/webui/static/css/pymeacquire.css +85 -0
  289. PYME/Acquire/webui/static/js/pymeacquire.js +375 -0
  290. PYME/Acquire/webui/static/js/pzf.js +95 -0
  291. PYME/Acquire/webui/templates/PYMEAcquire.html +232 -0
  292. PYME/Acquire/webui/templates/login.html +84 -0
  293. PYME/Acquire/webui/templates/xtermpage.html +106 -0
  294. PYME/Acquire/xyztc.py +418 -0
  295. PYME/Acquire/zScanner.py +287 -0
  296. PYME/Analysis/BleachProfile/__init__.py +26 -0
  297. PYME/Analysis/BleachProfile/deMod.py +91 -0
  298. PYME/Analysis/BleachProfile/fitRecover.py +90 -0
  299. PYME/Analysis/BleachProfile/intensProf.py +519 -0
  300. PYME/Analysis/BleachProfile/kinModels.py +507 -0
  301. PYME/Analysis/BleachProfile/rawIntensity.py +227 -0
  302. PYME/Analysis/BleachProfile/rollins.py +555 -0
  303. PYME/Analysis/Colocalisation/__init__.py +27 -0
  304. PYME/Analysis/Colocalisation/colocScaleDep.py +126 -0
  305. PYME/Analysis/Colocalisation/correlationCoeffs.py +198 -0
  306. PYME/Analysis/Colocalisation/distColoc.py +110 -0
  307. PYME/Analysis/Colocalisation/edtColoc.py +191 -0
  308. PYME/Analysis/MetaData.py +278 -0
  309. PYME/Analysis/PSFEst/__init__.py +27 -0
  310. PYME/Analysis/PSFEst/dec.py +283 -0
  311. PYME/Analysis/PSFEst/extractImages.py +316 -0
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PYME/contrib/lzw.py ADDED
@@ -0,0 +1,838 @@
1
+
2
+ """
3
+ A stream friendly, simple compression library, built around
4
+ iterators. See L{compress} and L{decompress} for the easiest way to
5
+ get started.
6
+
7
+ After the TIFF implementation of LZW, as described at
8
+ U{http://www.fileformat.info/format/tiff/corion-lzw.htm}
9
+
10
+
11
+ In an even-nuttier-shell, lzw compresses input bytes with integer
12
+ codes. Starting with codes 0-255 that code to themselves, and two
13
+ control codes, we work our way through a stream of bytes. When we
14
+ encounter a pair of codes c1,c2 we add another entry to our code table
15
+ with the lowest available code and the value value(c1) + value(c2)[0]
16
+
17
+ Of course, there are details :)
18
+
19
+ The Details
20
+ ===========
21
+
22
+ Our control codes are
23
+
24
+ - CLEAR_CODE (codepoint 256). When this code is encountered, we flush
25
+ the codebook and start over.
26
+ - END_OF_INFO_CODE (codepoint 257). This code is reserved for
27
+ encoder/decoders over the integer codepoint stream (like the
28
+ mechanical bit that unpacks bits into codepoints)
29
+
30
+ When dealing with bytes, codes are emitted as variable
31
+ length bit strings packed into the stream of bytes.
32
+
33
+ codepoints are written with varying length
34
+ - initially 9 bits
35
+ - at 512 entries 10 bits
36
+ - at 1025 entries at 11 bits
37
+ - at 2048 entries 12 bits
38
+ - with max of 4095 entries in a table (including Clear and EOI)
39
+
40
+ code points are stored with their MSB in the most significant bit
41
+ available in the output character.
42
+
43
+ >>> import lzw
44
+ >>>
45
+ >>> mybytes = lzw.readbytes("README.txt")
46
+ >>> lessbytes = lzw.compress(mybytes)
47
+ >>> newbytes = b"".join(lzw.decompress(lessbytes))
48
+ >>> oldbytes = b"".join(lzw.readbytes("README.txt"))
49
+ >>> oldbytes == newbytes
50
+ True
51
+
52
+
53
+ """
54
+
55
+ __author__ = "Joe Bowers"
56
+ __license__ = "MIT License"
57
+ __version__ = "0.01.11"
58
+ __status__ = "Development"
59
+ __email__ = "joerbowers@gmail.com"
60
+ __url__ = "http://www.joe-bowers.com/static/lzw"
61
+
62
+ import struct
63
+ import itertools
64
+
65
+
66
+ CLEAR_CODE = None#256
67
+ END_OF_INFO_CODE = None#257
68
+
69
+ DEFAULT_MIN_BITS = 9
70
+ DEFAULT_MAX_BITS = 12
71
+
72
+
73
+
74
+
75
+ def compress(plaintext_bytes):
76
+ """
77
+ Given an iterable of bytes, returns a (hopefully shorter) iterable
78
+ of bytes that you can store in a file or pass over the network or
79
+ what-have-you, and later use to get back your original bytes with
80
+ L{decompress}. This is the best place to start using this module.
81
+ """
82
+ encoder = ByteEncoder()
83
+ return encoder.encodetobytes(plaintext_bytes)
84
+
85
+
86
+ def decompress(compressed_bytes):
87
+ """
88
+ Given an iterable of bytes that were the result of a call to
89
+ L{compress}, returns an iterator over the uncompressed bytes.
90
+ """
91
+ decoder = ByteDecoder()
92
+ return decoder.decodefrombytes(compressed_bytes)
93
+
94
+
95
+
96
+
97
+
98
+ class ByteEncoder(object):
99
+ """
100
+ Takes a stream of uncompressed bytes and produces a stream of
101
+ compressed bytes, usable by L{ByteDecoder}. Combines an L{Encoder}
102
+ with a L{BitPacker}.
103
+
104
+
105
+ >>> import lzw
106
+ >>>
107
+ >>> enc = lzw.ByteEncoder(12)
108
+ >>> bigstr = b"gabba gabba yo gabba gabba gabba yo gabba gabba gabba yo gabba gabba gabba yo"
109
+ >>> encoding = enc.encodetobytes(bigstr)
110
+ >>> encoded = b"".join( b for b in encoding )
111
+ >>> encoded
112
+ '3\\x98LF#\\x08\\x82\\x05\\x04\\x83\\x1eM\\xf0x\\x1c\\x16\\x1b\\t\\x88C\\xe1q(4"\\x1f\\x17\\x85C#1X\\xec.\\x00'
113
+ >>>
114
+ >>> dec = lzw.ByteDecoder()
115
+ >>> decoding = dec.decodefrombytes(encoded)
116
+ >>> decoded = b"".join(decoding)
117
+ >>> decoded == bigstr
118
+ True
119
+
120
+ """
121
+
122
+ def __init__(self, max_width=DEFAULT_MAX_BITS):
123
+ """
124
+ max_width is the maximum width in bits we want to see in the
125
+ output stream of codepoints.
126
+ """
127
+ self._encoder = Encoder(max_code_size=2**max_width)
128
+ self._packer = BitPacker(initial_code_size=self._encoder.code_size())
129
+
130
+
131
+ def encodetobytes(self, bytesource):
132
+ """
133
+ Returns an iterator of bytes, adjusting our packed width
134
+ between minwidth and maxwidth when it detects an overflow is
135
+ about to occur. Dual of L{ByteDecoder.decodefrombytes}.
136
+ """
137
+ codepoints = self._encoder.encode(bytesource)
138
+ codebytes = self._packer.pack(codepoints)
139
+
140
+ return codebytes
141
+
142
+
143
+ class ByteDecoder(object):
144
+ """
145
+ Decodes, combines bit-unpacking and interpreting a codepoint
146
+ stream, suitable for use with bytes generated by
147
+ L{ByteEncoder}.
148
+
149
+ See L{ByteDecoder} for a usage example.
150
+ """
151
+ def __init__(self):
152
+ """
153
+ """
154
+
155
+ self._decoder = Decoder()
156
+ self._unpacker = BitUnpacker(initial_code_size=self._decoder.code_size())
157
+ self.remaining = []
158
+
159
+ def decodefrombytes(self, bytesource):
160
+ """
161
+ Given an iterator over BitPacked, Encoded bytes, Returns an
162
+ iterator over the uncompressed bytes. Dual of
163
+ L{ByteEncoder.encodetobytes}. See L{ByteEncoder} for an
164
+ example of use.
165
+ """
166
+ codepoints = self._unpacker.unpack(bytesource)
167
+ clearbytes = self._decoder.decode(codepoints)
168
+
169
+ return clearbytes
170
+
171
+
172
+ class BitPacker(object):
173
+ """
174
+ Translates a stream of lzw codepoints into a variable width packed
175
+ stream of bytes, for use by L{BitUnpacker}. One of a (potential)
176
+ set of encoders for a stream of LZW codepoints, intended to behave
177
+ as closely to the TIFF variable-width encoding scheme as closely
178
+ as possible.
179
+
180
+ The inbound stream of integer lzw codepoints are packed into
181
+ variable width bit fields, starting at the smallest number of bits
182
+ it can and then increasing the bit width as it anticipates the LZW
183
+ code size growing to overflow.
184
+
185
+ This class knows all kinds of intimate things about how it's
186
+ upstream codepoint processors work; it knows the control codes
187
+ CLEAR_CODE and END_OF_INFO_CODE, and (more intimately still), it
188
+ makes assumptions about the rate of growth of it's consumer's
189
+ codebook. This is ok, as long as the underlying encoder/decoders
190
+ don't know any intimate details about their BitPackers/Unpackers
191
+ """
192
+
193
+ def __init__(self, initial_code_size):
194
+ """
195
+ Takes an initial code book size (that is, the count of known
196
+ codes at the beginning of encoding, or after a clear)
197
+ """
198
+ self._initial_code_size = initial_code_size
199
+
200
+
201
+ def pack(self, codepoints):
202
+ """
203
+ Given an iterator of integer codepoints, returns an iterator
204
+ over bytes containing the codepoints packed into varying
205
+ lengths, with bit width growing to accomodate an input code
206
+ that it assumes will grow by one entry per codepoint seen.
207
+
208
+ Widths will be reset to the given initial_code_size when the
209
+ LZW CLEAR_CODE or END_OF_INFO_CODE code appears in the input,
210
+ and bytes following END_OF_INFO_CODE will be aligned to the
211
+ next byte boundary.
212
+
213
+ >>> import lzw
214
+ >>> pkr = lzw.BitPacker(258)
215
+ >>> [ b for b in pkr.pack([ 1, 257]) ] == [ chr(0), chr(0xC0), chr(0x40) ]
216
+ True
217
+ """
218
+ tailbits = []
219
+ codesize = self._initial_code_size
220
+
221
+ #minwidth = 8
222
+ minwidth = DEFAULT_MIN_BITS
223
+ while (1 << minwidth) < codesize:
224
+ minwidth = minwidth + 1
225
+
226
+ nextwidth = minwidth
227
+
228
+ for pt in codepoints:
229
+
230
+ newbits = inttobits(pt, nextwidth)
231
+ tailbits = tailbits + newbits
232
+
233
+ # PAY ATTENTION. This calculation should be driven by the
234
+ # size of the upstream codebook, right now we're just trusting
235
+ # that everybody intends to follow the TIFF spec.
236
+ codesize = codesize + 1
237
+
238
+ if pt == END_OF_INFO_CODE:
239
+ while len(tailbits) % 8:
240
+ tailbits.append(0)
241
+
242
+ if pt in [ CLEAR_CODE, END_OF_INFO_CODE ]:
243
+ nextwidth = minwidth
244
+ codesize = self._initial_code_size
245
+ elif codesize >= (2 ** nextwidth):
246
+ nextwidth = nextwidth + 1
247
+
248
+ while len(tailbits) > 8:
249
+ nextbits = tailbits[:8]
250
+ nextbytes = bitstobytes(nextbits)
251
+ for bt in nextbytes:
252
+ yield struct.pack("B", bt)
253
+
254
+ tailbits = tailbits[8:]
255
+
256
+
257
+ if tailbits:
258
+ tail = bitstobytes(tailbits)
259
+ for bt in tail:
260
+ yield struct.pack("B", bt)
261
+
262
+
263
+
264
+
265
+ class BitUnpacker(object):
266
+ """
267
+ An adaptive-width bit unpacker, intended to decode streams written
268
+ by L{BitPacker} into integer codepoints. Like L{BitPacker}, knows
269
+ about code size changes and control codes.
270
+ """
271
+
272
+ def __init__(self, initial_code_size):
273
+ """
274
+ initial_code_size is the starting size of the codebook
275
+ associated with the to-be-unpacked stream.
276
+ """
277
+ self._initial_code_size = initial_code_size
278
+
279
+
280
+ def unpack(self, bytesource):
281
+ """
282
+ Given an iterator of bytes, returns an iterator of integer
283
+ code points. Auto-magically adjusts point width when it sees
284
+ an almost-overflow in the input stream, or an LZW CLEAR_CODE
285
+ or END_OF_INFO_CODE
286
+
287
+ Trailing bits at the end of the given iterator, after the last
288
+ codepoint, will be dropped on the floor.
289
+
290
+ At the end of the iteration, or when an END_OF_INFO_CODE seen
291
+ the unpacker will ignore the bits after the code until it
292
+ reaches the next aligned byte. END_OF_INFO_CODE will *not*
293
+ stop the generator, just reset the alignment and the width
294
+
295
+
296
+ >>> import lzw
297
+ >>> unpk = lzw.BitUnpacker(initial_code_size=258)
298
+ >>> [ i for i in unpk.unpack([ chr(0), chr(0xC0), chr(0x40) ]) ]
299
+ [1, 257]
300
+ """
301
+ bits = []
302
+ offset = 0
303
+ ignore = 0
304
+
305
+ codesize = self._initial_code_size
306
+ #minwidth = 8
307
+ minwidth = DEFAULT_MIN_BITS
308
+ while (1 << minwidth) < codesize:
309
+ minwidth = minwidth + 1
310
+
311
+ pointwidth = minwidth
312
+
313
+ for nextbit in bytestobits(bytesource):
314
+
315
+ offset = (offset + 1) % 8
316
+ if ignore > 0:
317
+ ignore = ignore - 1
318
+ continue
319
+
320
+ bits.append(nextbit)
321
+
322
+ if len(bits) == pointwidth:
323
+ codepoint = intfrombits(bits)
324
+ bits = []
325
+
326
+ yield codepoint
327
+
328
+ codesize = codesize + 1
329
+
330
+ if codepoint in [ CLEAR_CODE, END_OF_INFO_CODE ]:
331
+ codesize = self._initial_code_size
332
+ pointwidth = minwidth
333
+ else:
334
+ # is this too late?
335
+ while codesize >= (2 ** pointwidth + 1):
336
+ pointwidth = pointwidth + 1
337
+ #ignore = (8 - offset) % 8
338
+
339
+ if codepoint == END_OF_INFO_CODE:
340
+ ignore = (8 - offset) % 8
341
+
342
+
343
+
344
+ class Decoder(object):
345
+ """
346
+ Uncompresses a stream of lzw code points, as created by
347
+ L{Encoder}. Given a list of integer code points, with all
348
+ unpacking foolishness complete, turns that list of codepoints into
349
+ a list of uncompressed bytes. See L{BitUnpacker} for what this
350
+ doesn't do.
351
+ """
352
+ def __init__(self):
353
+ """
354
+ Creates a new Decoder. Decoders should not be reused for
355
+ different streams.
356
+ """
357
+ self._clear_codes()
358
+ self.remainder = []
359
+
360
+
361
+ def code_size(self):
362
+ """
363
+ Returns the current size of the Decoder's code book, that is,
364
+ it's mapping of codepoints to byte strings. The return value of
365
+ this method will change as the decode encounters more encoded
366
+ input, or control codes.
367
+ """
368
+ return len(self._codepoints)
369
+
370
+
371
+ def decode(self, codepoints):
372
+ """
373
+ Given an iterable of integer codepoints, yields the
374
+ corresponding bytes, one at a time, as byte strings of length
375
+ E{1}. Retains the state of the codebook from call to call, so
376
+ if you have another stream, you'll likely need another
377
+ decoder!
378
+
379
+ Decoders will NOT handle END_OF_INFO_CODE (rather, they will
380
+ handle the code by throwing an exception); END_OF_INFO should
381
+ be handled by the upstream codepoint generator (see
382
+ L{BitUnpacker}, for example)
383
+
384
+ >>> import lzw
385
+ >>> dec = lzw.Decoder()
386
+ >>> ''.join(dec.decode([103, 97, 98, 98, 97, 32, 258, 260, 262, 121, 111, 263, 259, 261, 256]))
387
+ 'gabba gabba yo gabba'
388
+
389
+ """
390
+ codepoints = [ cp for cp in codepoints ]
391
+
392
+ for cp in codepoints:
393
+ decoded = self._decode_codepoint(cp)
394
+ for character in decoded:
395
+ yield character
396
+
397
+
398
+
399
+ def _decode_codepoint(self, codepoint):
400
+ """
401
+ Will raise a ValueError if given an END_OF_INFORMATION
402
+ code. EOI codes should be handled by callers if they're
403
+ present in our source stream.
404
+
405
+ >>> import lzw
406
+ >>> dec = lzw.Decoder()
407
+ >>> beforesize = dec.code_size()
408
+ >>> dec._decode_codepoint(0x80)
409
+ '\\x80'
410
+ >>> dec._decode_codepoint(0x81)
411
+ '\\x81'
412
+ >>> beforesize + 1 == dec.code_size()
413
+ True
414
+ >>> dec._decode_codepoint(256)
415
+ ''
416
+ >>> beforesize == dec.code_size()
417
+ True
418
+ """
419
+
420
+ ret = b""
421
+
422
+ if codepoint == CLEAR_CODE:
423
+ self._clear_codes()
424
+ elif codepoint == END_OF_INFO_CODE:
425
+ raise ValueError("End of information code not supported directly by this Decoder")
426
+ else:
427
+ if codepoint in self._codepoints:
428
+ ret = self._codepoints[ codepoint ]
429
+ if None != self._prefix:
430
+ self._codepoints[ len(self._codepoints) ] = self._prefix + ret[0]
431
+
432
+ else:
433
+ ret = self._prefix + self._prefix[0]
434
+ self._codepoints[ len(self._codepoints) ] = ret
435
+
436
+ self._prefix = ret
437
+
438
+ return ret
439
+
440
+
441
+ def _clear_codes(self):
442
+ self._codepoints = dict( (pt, struct.pack("B", pt)) for pt in range(256) )
443
+ if not CLEAR_CODE is None:
444
+ self._codepoints[CLEAR_CODE] = CLEAR_CODE
445
+ if not END_OF_INFO_CODE is None:
446
+ self._codepoints[END_OF_INFO_CODE] = END_OF_INFO_CODE
447
+ self._prefix = None
448
+
449
+
450
+ class Encoder(object):
451
+ """
452
+ Given an iterator of bytes, returns an iterator of integer
453
+ codepoints, suitable for use by L{Decoder}. The core of the
454
+ "compression" side of lzw compression/decompression.
455
+ """
456
+ def __init__(self, max_code_size=(2**DEFAULT_MAX_BITS)):
457
+ """
458
+ When the encoding codebook grows larger than max_code_size,
459
+ the Encoder will clear its codebook and emit a CLEAR_CODE
460
+ """
461
+
462
+ self.closed = False
463
+
464
+ self._max_code_size = max_code_size
465
+ self._buffer = ''
466
+ self._clear_codes()
467
+
468
+ if max_code_size < self.code_size():
469
+ raise ValueError("Max code size too small, (must be at least {0})".format(self.code_size()))
470
+
471
+
472
+ def code_size(self):
473
+ """
474
+ Returns a count of the known codes, including codes that are
475
+ implicit in the data but have not yet been produced by the
476
+ iterator.
477
+ """
478
+ return len(self._prefixes)
479
+
480
+
481
+ def flush(self):
482
+ """
483
+ Yields any buffered codepoints, followed by a CLEAR_CODE, and
484
+ clears the codebook as a side effect.
485
+ """
486
+
487
+ flushed = []
488
+
489
+ if self._buffer:
490
+ yield self._prefixes[ self._buffer ]
491
+ self._buffer = ''
492
+
493
+ yield CLEAR_CODE
494
+ self._clear_codes()
495
+
496
+
497
+
498
+
499
+ def encode(self, bytesource):
500
+ """
501
+ Given an iterator over bytes, yields the
502
+ corresponding stream of codepoints.
503
+ Will clear the codes at the end of the stream.
504
+
505
+ >>> import lzw
506
+ >>> enc = lzw.Encoder()
507
+ >>> [ cp for cp in enc.encode("gabba gabba yo gabba") ]
508
+ [103, 97, 98, 98, 97, 32, 258, 260, 262, 121, 111, 263, 259, 261, 256]
509
+
510
+ """
511
+ for b in bytesource:
512
+ for point in self._encode_byte(b):
513
+ yield point
514
+
515
+ if self.code_size() >= self._max_code_size:
516
+ for pt in self.flush():
517
+ yield pt
518
+
519
+ for point in self.flush():
520
+ yield point
521
+
522
+
523
+ def _encode_byte(self, byte):
524
+ # Yields one or zero bytes, AND changes the internal state of
525
+ # the codebook and prefix buffer.
526
+ #
527
+ # Unless you're in self.encode(), you almost certainly don't
528
+ # want to call this.
529
+
530
+ new_prefix = self._buffer
531
+
532
+ if new_prefix + byte in self._prefixes:
533
+ new_prefix = new_prefix + byte
534
+ elif new_prefix:
535
+ encoded = self._prefixes[ new_prefix ]
536
+ self._add_code(new_prefix + byte)
537
+ new_prefix = byte
538
+
539
+ yield encoded
540
+
541
+ self._buffer = new_prefix
542
+
543
+
544
+
545
+
546
+ def _clear_codes(self):
547
+
548
+ # Teensy hack, CLEAR_CODE and END_OF_INFO_CODE aren't
549
+ # equal to any possible string.
550
+
551
+ self._prefixes = dict( (struct.pack("B", codept), codept) for codept in range(256) )
552
+ self._prefixes[ CLEAR_CODE ] = CLEAR_CODE
553
+ self._prefixes[ END_OF_INFO_CODE ] = END_OF_INFO_CODE
554
+
555
+
556
+ def _add_code(self, newstring):
557
+ self._prefixes[ newstring ] = len(self._prefixes)
558
+
559
+
560
+
561
+ class PagingEncoder(object):
562
+ """
563
+ UNTESTED. Handles encoding of multiple chunks or streams of encodable data,
564
+ separated with control codes. Dual of PagingDecoder.
565
+ """
566
+ def __init__(self, initial_code_size, max_code_size):
567
+ self._initial_code_size = initial_code_size
568
+ self._max_code_size = max_code_size
569
+
570
+
571
+ def encodepages(self, pages):
572
+ """
573
+ Given an iterator of iterators of bytes, produces a single
574
+ iterator containing a delimited sequence of independantly
575
+ compressed LZW sequences, all beginning on a byte-aligned
576
+ spot, all beginning with a CLEAR code and all terminated with
577
+ an END_OF_INFORMATION code (and zero to seven trailing junk
578
+ bits.)
579
+
580
+ The dual of PagingDecoder.decodepages
581
+
582
+ >>> import lzw
583
+ >>> enc = lzw.PagingEncoder(257, 2**12)
584
+ >>> coded = enc.encodepages([ "say hammer yo hammer mc hammer go hammer",
585
+ ... "and the rest can go and play",
586
+ ... "can't touch this" ])
587
+ ...
588
+ >>> b"".join(coded)
589
+ '\\x80\\x1c\\xcc\\'\\x91\\x01\\xa0\\xc2m6\\x99NB\\x03\\xc9\\xbe\\x0b\\x07\\x84\\xc2\\xcd\\xa68|"\\x14 3\\xc3\\xa0\\xd1c\\x94\\x02\\x02\\x80\\x18M\\xc6A\\x01\\xd0\\xd0e\\x10\\x1c\\x8c\\xa73\\xa0\\x80\\xc7\\x02\\x10\\x19\\xcd\\xe2\\x08\\x14\\x10\\xe0l0\\x9e`\\x10\\x10\\x80\\x18\\xcc&\\xe19\\xd0@t7\\x9dLf\\x889\\xa0\\xd2s\\x80@@'
590
+
591
+ """
592
+
593
+ for page in pages:
594
+
595
+ encoder = Encoder(max_code_size=self._max_code_size)
596
+ codepoints = encoder.encode(page)
597
+ codes_and_eoi = itertools.chain([ CLEAR_CODE ], codepoints, [ END_OF_INFO_CODE ])
598
+
599
+ packer = BitPacker(initial_code_size=encoder.code_size())
600
+ packed = packer.pack(codes_and_eoi)
601
+
602
+ for byte in packed:
603
+ yield byte
604
+
605
+
606
+
607
+
608
+ class PagingDecoder(object):
609
+ """
610
+ UNTESTED. Dual of PagingEncoder, knows how to handle independantly encoded,
611
+ END_OF_INFO_CODE delimited chunks of an inbound byte stream
612
+ """
613
+
614
+ def __init__(self, initial_code_size):
615
+ self._initial_code_size = initial_code_size
616
+ self._remains = []
617
+
618
+ def next_page(self, codepoints):
619
+ """
620
+ Iterator over the next page of codepoints.
621
+ """
622
+ self._remains = []
623
+
624
+ try:
625
+ while 1:
626
+ cp = next(codepoints)
627
+ if cp != END_OF_INFO_CODE:
628
+ yield cp
629
+ else:
630
+ self._remains = codepoints
631
+ break
632
+
633
+ except StopIteration:
634
+ pass
635
+
636
+
637
+ def decodepages(self, bytesource):
638
+ """
639
+ Takes an iterator of bytes, returns an iterator of iterators
640
+ of uncompressed data. Expects input to conform to the output
641
+ conventions of PagingEncoder(), in particular that "pages" are
642
+ separated with an END_OF_INFO_CODE and padding up to the next
643
+ byte boundary.
644
+
645
+ BUG: Dangling trailing page on decompression.
646
+
647
+ >>> import lzw
648
+ >>> pgdec = lzw.PagingDecoder(initial_code_size=257)
649
+ >>> pgdecoded = pgdec.decodepages(
650
+ ... ''.join([ '\\x80\\x1c\\xcc\\'\\x91\\x01\\xa0\\xc2m6',
651
+ ... '\\x99NB\\x03\\xc9\\xbe\\x0b\\x07\\x84\\xc2',
652
+ ... '\\xcd\\xa68|"\\x14 3\\xc3\\xa0\\xd1c\\x94',
653
+ ... '\\x02\\x02\\x80\\x18M\\xc6A\\x01\\xd0\\xd0e',
654
+ ... '\\x10\\x1c\\x8c\\xa73\\xa0\\x80\\xc7\\x02\\x10',
655
+ ... '\\x19\\xcd\\xe2\\x08\\x14\\x10\\xe0l0\\x9e`\\x10',
656
+ ... '\\x10\\x80\\x18\\xcc&\\xe19\\xd0@t7\\x9dLf\\x889',
657
+ ... '\\xa0\\xd2s\\x80@@' ])
658
+ ... )
659
+ >>> [ b"".join(pg) for pg in pgdecoded ]
660
+ ['say hammer yo hammer mc hammer go hammer', 'and the rest can go and play', "can't touch this", '']
661
+
662
+ """
663
+
664
+ # TODO: WE NEED A CODE SIZE POLICY OBJECT THAT ISN'T THIS.
665
+ # honestly, we should have a "codebook" object we need to pass
666
+ # to bit packing/unpacking tools, etc, such that we don't have
667
+ # to roll all of these code size assumptions everyplace.
668
+
669
+ unpacker = BitUnpacker(initial_code_size=self._initial_code_size)
670
+ codepoints = unpacker.unpack(bytesource)
671
+
672
+ self._remains = codepoints
673
+ while self._remains:
674
+ nextpoints = self.next_page(self._remains)
675
+ nextpoints = [ nx for nx in nextpoints ]
676
+
677
+ decoder = Decoder()
678
+ decoded = decoder.decode(nextpoints)
679
+ decoded = [ dec for dec in decoded ]
680
+
681
+ yield decoded
682
+
683
+
684
+
685
+ #########################################
686
+ # Conveniences.
687
+
688
+
689
+ # PYTHON V2
690
+ def unpackbyte(b):
691
+ """
692
+ Given a one-byte long byte string, returns an integer. Equivalent
693
+ to struct.unpack("B", b)
694
+ """
695
+ (ret,) = struct.unpack("B", b)
696
+ return ret
697
+
698
+
699
+ # PYTHON V3
700
+ # def unpackbyte(b): return b
701
+
702
+
703
+ def filebytes(fileobj, buffersize=1024):
704
+ """
705
+ Convenience for iterating over the bytes in a file. Given a
706
+ file-like object (with a read(int) method), returns an iterator
707
+ over the bytes of that file.
708
+ """
709
+ buff = fileobj.read(buffersize)
710
+ while buff:
711
+ for byte in buff: yield byte
712
+ buff = fileobj.read(buffersize)
713
+
714
+
715
+ def readbytes(filename, buffersize=1024):
716
+ """
717
+ Opens a file named by filename and iterates over the L{filebytes}
718
+ found therein. Will close the file when the bytes run out.
719
+ """
720
+ with open(filename, "rb") as infile:
721
+ for byte in filebytes(infile, buffersize):
722
+ yield byte
723
+
724
+
725
+
726
+ def writebytes(filename, bytesource):
727
+ """
728
+ Convenience for emitting the bytes we generate to a file. Given a
729
+ filename, opens and truncates the file, dumps the bytes
730
+ from bytesource into it, and closes it
731
+ """
732
+
733
+ with open(filename, "wb") as outfile:
734
+ for bt in bytesource:
735
+ outfile.write(bt)
736
+
737
+
738
+ def inttobits(anint, width=None):
739
+ """
740
+ Produces an array of booleans representing the given argument as
741
+ an unsigned integer, MSB first. If width is given, will pad the
742
+ MSBs to the given width (but will NOT truncate overflowing
743
+ results)
744
+
745
+ >>> import lzw
746
+ >>> lzw.inttobits(304, width=16)
747
+ [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0]
748
+
749
+ """
750
+ remains = anint
751
+ retreverse = []
752
+ while remains:
753
+ retreverse.append(remains & 1)
754
+ remains = remains >> 1
755
+
756
+ retreverse.reverse()
757
+
758
+ ret = retreverse
759
+ if None != width:
760
+ ret_head = [ 0 ] * (width - len(ret))
761
+ ret = ret_head + ret
762
+
763
+ return ret
764
+
765
+
766
+ def intfrombits(bits):
767
+ """
768
+ Given a list of boolean values, interprets them as a binary
769
+ encoded, MSB-first unsigned integer (with True == 1 and False
770
+ == 0) and returns the result.
771
+
772
+ >>> import lzw
773
+ >>> lzw.intfrombits([ 1, 0, 0, 1, 1, 0, 0, 0, 0 ])
774
+ 304
775
+ """
776
+ ret = 0
777
+ lsb_first = [ b for b in bits ]
778
+ lsb_first.reverse()
779
+
780
+ for bit_index in range(len(lsb_first)):
781
+ if lsb_first[ bit_index ]:
782
+ ret = ret | (1 << bit_index)
783
+
784
+ return ret
785
+
786
+
787
+ def bytestobits(bytesource):
788
+ """
789
+ Breaks a given iterable of bytes into an iterable of boolean
790
+ values representing those bytes as unsigned integers.
791
+
792
+ >>> import lzw
793
+ >>> [ x for x in lzw.bytestobits(b"\\x01\\x30") ]
794
+ [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0]
795
+ """
796
+ for b in bytesource:
797
+
798
+ value = unpackbyte(b)
799
+
800
+ for bitplusone in range(8, 0, -1):
801
+ bitindex = bitplusone - 1
802
+ nextbit = 1 & (value >> bitindex)
803
+ yield nextbit
804
+
805
+
806
+ def bitstobytes(bits):
807
+ """
808
+ Interprets an indexable list of booleans as bits, MSB first, to be
809
+ packed into a list of integers from 0 to 256, MSB first, with LSBs
810
+ zero-padded. Note this padding behavior means that round-trips of
811
+ bytestobits(bitstobytes(x, width=W)) may not yield what you expect
812
+ them to if W % 8 != 0
813
+
814
+ Does *NOT* pack the returned values into a bytearray or the like.
815
+
816
+ >>> import lzw
817
+ >>> bitstobytes([0, 0, 0, 0, 0, 0, 0, 0, "Yes, I'm True"]) == [ 0x00, 0x80 ]
818
+ True
819
+ >>> bitstobytes([0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0]) == [ 0x01, 0x30 ]
820
+ True
821
+ """
822
+ ret = []
823
+ nextbyte = 0
824
+ nextbit = 7
825
+ for bit in bits:
826
+ if bit:
827
+ nextbyte = nextbyte | (1 << nextbit)
828
+
829
+ if nextbit:
830
+ nextbit = nextbit - 1
831
+ else:
832
+ ret.append(nextbyte)
833
+ nextbit = 7
834
+ nextbyte = 0
835
+
836
+ if nextbit < 7: ret.append(nextbyte)
837
+ return ret
838
+