partis-bcr 1.0.8.post1.dev1__py3-none-any.whl → 1.0.9.post1.dev1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (95) hide show
  1. {partis_bcr-1.0.8.post1.dev1.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/METADATA +1 -1
  2. {partis_bcr-1.0.8.post1.dev1.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/RECORD +95 -95
  3. test/new-results/get-selection-metrics-new-simu.yaml +1 -1
  4. test/new-results/test.log +2 -2
  5. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +4 -4
  6. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +4 -4
  7. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +1 -1
  8. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log +3 -3
  9. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log +1 -1
  10. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  11. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  12. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  13. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  14. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  15. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  16. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  17. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  18. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  19. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  20. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  21. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  22. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  23. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  24. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  25. test/paired/new-results/run-times.csv +6 -6
  26. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +6 -6
  27. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +5 -5
  28. test/paired/new-results/subset-partition-new-simu/merged-partition.log +3 -3
  29. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  30. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  31. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  32. test/paired/new-results/test.log +33 -33
  33. test/ref-results/partition-new-simu/iqtree/iclust-0/log +187 -151
  34. test/ref-results/partition-new-simu/iqtree/iclust-0/out.ckp.gz +0 -0
  35. test/ref-results/partition-new-simu/iqtree/iclust-0/out.iqtree +34 -34
  36. test/ref-results/partition-new-simu/iqtree/iclust-0/out.log +187 -151
  37. test/ref-results/partition-new-simu/iqtree/iclust-0/out.model.gz +0 -0
  38. test/ref-results/partition-new-simu/iqtree/iclust-0/out.state +2820 -2820
  39. test/ref-results/partition-new-simu/iqtree/iclust-0/out.treefile +1 -1
  40. test/ref-results/partition-new-simu/iqtree/iclust-1/log +166 -207
  41. test/ref-results/partition-new-simu/iqtree/iclust-1/out.ckp.gz +0 -0
  42. test/ref-results/partition-new-simu/iqtree/iclust-1/out.iqtree +151 -151
  43. test/ref-results/partition-new-simu/iqtree/iclust-1/out.log +166 -207
  44. test/ref-results/partition-new-simu/iqtree/iclust-1/out.model.gz +0 -0
  45. test/ref-results/partition-new-simu/iqtree/iclust-1/out.state +740 -740
  46. test/ref-results/partition-new-simu/iqtree/iclust-1/out.treefile +1 -1
  47. test/ref-results/partition-new-simu/iqtree/iclust-2/log +134 -135
  48. test/ref-results/partition-new-simu/iqtree/iclust-2/out.ckp.gz +0 -0
  49. test/ref-results/partition-new-simu/iqtree/iclust-2/out.iqtree +17 -17
  50. test/ref-results/partition-new-simu/iqtree/iclust-2/out.log +134 -135
  51. test/ref-results/partition-new-simu/iqtree/iclust-2/out.model.gz +0 -0
  52. test/ref-results/partition-new-simu/iqtree/iclust-2/out.state +763 -763
  53. test/ref-results/partition-new-simu/iqtree/iclust-2/out.treefile +1 -1
  54. test/ref-results/partition-new-simu/iqtree-annotations.yaml +1 -1
  55. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralProbs +30 -30
  56. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralStates +7 -7
  57. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralTree +1 -1
  58. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestModel +1 -1
  59. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestTree +1 -1
  60. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestTreeCollapsed +1 -1
  61. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.log +87 -87
  62. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.mlTrees +20 -20
  63. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.startTree +20 -20
  64. test/ref-results/partition-new-simu/raxml/iclust-0/log +198 -197
  65. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralTree +1 -1
  66. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTree +1 -1
  67. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTreeCollapsed +1 -1
  68. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.log +54 -54
  69. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.mlTrees +20 -20
  70. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.startTree +20 -20
  71. test/ref-results/partition-new-simu/raxml/iclust-1/log +112 -112
  72. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralProbs +22 -22
  73. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralStates +6 -6
  74. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralTree +1 -1
  75. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestModel +1 -1
  76. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestTree +1 -1
  77. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestTreeCollapsed +1 -1
  78. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.log +84 -84
  79. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.mlTrees +20 -20
  80. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.startTree +20 -20
  81. test/ref-results/partition-new-simu/raxml/iclust-2/log +182 -182
  82. test/ref-results/partition-new-simu/raxml-annotations.yaml +1 -1
  83. {partis_bcr-1.0.8.post1.dev1.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/cf-alleles.py +0 -0
  84. {partis_bcr-1.0.8.post1.dev1.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/cf-germlines.py +0 -0
  85. {partis_bcr-1.0.8.post1.dev1.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/compare-plotdirs.py +0 -0
  86. {partis_bcr-1.0.8.post1.dev1.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/extract-pairing-info.py +0 -0
  87. {partis_bcr-1.0.8.post1.dev1.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/gctree-run.py +0 -0
  88. {partis_bcr-1.0.8.post1.dev1.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/get-naive-probabilities.py +0 -0
  89. {partis_bcr-1.0.8.post1.dev1.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/parse-output.py +0 -0
  90. {partis_bcr-1.0.8.post1.dev1.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/partis-test.py +0 -0
  91. {partis_bcr-1.0.8.post1.dev1.data → partis_bcr-1.0.9.post1.dev1.data}/scripts/split-loci.py +0 -0
  92. {partis_bcr-1.0.8.post1.dev1.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/WHEEL +0 -0
  93. {partis_bcr-1.0.8.post1.dev1.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/entry_points.txt +0 -0
  94. {partis_bcr-1.0.8.post1.dev1.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/licenses/COPYING +0 -0
  95. {partis_bcr-1.0.8.post1.dev1.dist-info → partis_bcr-1.0.9.post1.dev1.dist-info}/top_level.txt +0 -0
test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.log CHANGED
@@ -7,14 +7,14 @@ Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!
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  System: AMD EPYC 7763 64-Core Processor, 2 cores, 15 GB RAM
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- RAxML-NG was called at 16-Aug-2025 23:08:18 as follows:
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+ RAxML-NG was called at 18-Aug-2025 15:31:54 as follows:
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  /home/runner/work/partis/partis/bin/raxml-ng-linux --model GTR+G --msa /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa --msa-format FASTA --ancestral --tree /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralTree
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  Analysis options:
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  run mode: Ancestral state reconstruction
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  start tree(s): user
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- random seed: 1755385698
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+ random seed: 1755531114
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  tip-inner: ON
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  pattern compression: OFF
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  Starting ML tree search with 20 distinct starting trees
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- [00:00:00] Tree #1, initial LogLikelihood: -1045.659744
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- [00:00:00] Tree #16, initial LogLikelihood: -1004.326398
164
+ [00:00:00] Tree #16, initial LogLikelihood: -1004.319570
165
165
 
166
- [00:00:00 -1004.326398] Initial branch length optimization
167
- [00:00:00 -668.058705] Model parameter optimization (eps = 10.000000)
166
+ [00:00:00 -1004.319570] Initial branch length optimization
167
+ [00:00:00 -668.056689] Model parameter optimization (eps = 10.000000)
168
168
 
169
- [00:00:00] Tree #16, final logLikelihood: -662.852320
169
+ [00:00:00] Tree #16, final logLikelihood: -662.852976
170
170
 
171
- [00:00:00] Tree #17, initial LogLikelihood: -1004.325322
171
+ [00:00:00] Tree #17, initial LogLikelihood: -1004.322276
172
172
 
173
- [00:00:00 -1004.325322] Initial branch length optimization
174
- [00:00:00 -668.056408] Model parameter optimization (eps = 10.000000)
173
+ [00:00:00 -1004.322276] Initial branch length optimization
174
+ [00:00:00 -668.056467] Model parameter optimization (eps = 10.000000)
175
175
 
176
- [00:00:00] Tree #17, final logLikelihood: -662.853188
176
+ [00:00:00] Tree #17, final logLikelihood: -662.853119
177
177
 
178
- [00:00:00] Tree #18, initial LogLikelihood: -1004.328189
178
+ [00:00:00] Tree #18, initial LogLikelihood: -1004.326038
179
179
 
180
- [00:00:00 -1004.328189] Initial branch length optimization
181
- [00:00:00 -668.057815] Model parameter optimization (eps = 10.000000)
180
+ [00:00:00 -1004.326038] Initial branch length optimization
181
+ [00:00:00 -668.056343] Model parameter optimization (eps = 10.000000)
182
182
 
183
- [00:00:00] Tree #18, final logLikelihood: -662.852694
183
+ [00:00:00] Tree #18, final logLikelihood: -662.853175
184
184
 
185
- [00:00:00] Tree #19, initial LogLikelihood: -1004.322428
185
+ [00:00:00] Tree #19, initial LogLikelihood: -1004.319547
186
186
 
187
- [00:00:00 -1004.322428] Initial branch length optimization
188
- [00:00:00 -668.058423] Model parameter optimization (eps = 10.000000)
187
+ [00:00:00 -1004.319547] Initial branch length optimization
188
+ [00:00:00 -668.056307] Model parameter optimization (eps = 10.000000)
189
189
 
190
- [00:00:00] Tree #19, final logLikelihood: -662.852359
190
+ [00:00:00] Tree #19, final logLikelihood: -662.853237
191
191
 
192
- [00:00:00] Tree #20, initial LogLikelihood: -1004.319412
192
+ [00:00:00] Tree #20, initial LogLikelihood: -1004.326486
193
193
 
194
- [00:00:00 -1004.319412] Initial branch length optimization
195
- [00:00:00 -668.056741] Model parameter optimization (eps = 10.000000)
194
+ [00:00:00 -1004.326486] Initial branch length optimization
195
+ [00:00:00 -668.057933] Model parameter optimization (eps = 10.000000)
196
196
 
197
- [00:00:00] Tree #20, final logLikelihood: -662.852953
197
+ [00:00:00] Tree #20, final logLikelihood: -662.852624
198
198
 
199
199
 
200
200
  Optimized model parameters:
201
201
 
202
202
  Partition 0: noname
203
- Rate heterogeneity: GAMMA (4 cats, mean), alpha: 99.862246 (ML), weights&rates: (0.250000,0.875822) (0.250000,0.964713) (0.250000,1.029567) (0.250000,1.129897)
204
- Base frequencies (ML): 0.219082 0.257002 0.304229 0.219686
205
- Substitution rates (ML): 0.897311 0.970592 0.393839 0.763217 0.745304 1.000000
203
+ Rate heterogeneity: GAMMA (4 cats, mean), alpha: 99.862237 (ML), weights&rates: (0.250000,0.875822) (0.250000,0.964713) (0.250000,1.029567) (0.250000,1.129897)
204
+ Base frequencies (ML): 0.219082 0.256999 0.304238 0.219681
205
+ Substitution rates (ML): 0.897660 0.970520 0.394048 0.762800 0.745857 1.000000
206
206
 
207
207
  Marginal ancestral probabilities saved to: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralProbs
208
208
  Reconstructed ancestral sequences saved to: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralStates
@@ -210,7 +210,7 @@ Node-labeled tree saved to: /home/runner/work/partis/partis/test/ref-results/par
210
210
 
211
211
  Execution log saved to: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.log
212
212
 
213
- Analysis started: 16-Aug-2025 23:08:18 / finished: 16-Aug-2025 23:08:19
213
+ Analysis started: 18-Aug-2025 15:31:54 / finished: 18-Aug-2025 15:31:55
214
214
 
215
- Elapsed time: 0.371 seconds
215
+ Elapsed time: 0.427 seconds
216
216
 
test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.mlTrees CHANGED
@@ -1,20 +1,20 @@
1
- (((5fb484a8a6:0.014574,efdea248af:0.008730):0.000001,((((f47122f1f5:0.000001,8024ed1a22:0.000001):0.000001,648902c3e5:0.000001):0.005797,(9c3cedb840:0.002893,ee25049b92:0.005819):0.011684):0.000001,((XnaiveX:0.000001,d024e5cab0:0.000001):0.000001,822801f8ab:0.000001):0.005800):0.000001):0.000001,18f4019708:0.014599,308de1d739:0.011643);
2
- (8024ed1a22:0.000001,f47122f1f5:0.000001,((((((d024e5cab0:0.000001,822801f8ab:0.000001):0.000001,XnaiveX:0.000001):0.005800,18f4019708:0.014599):0.000001,(5fb484a8a6:0.014574,(ee25049b92:0.005819,9c3cedb840:0.002893):0.011684):0.000001):0.000001,(308de1d739:0.011643,efdea248af:0.008730):0.000001):0.005797,648902c3e5:0.000001):0.000001);
3
- (((((648902c3e5:0.000001,8024ed1a22:0.000001):0.000001,f47122f1f5:0.000001):0.005797,((d024e5cab0:0.000001,822801f8ab:0.000001):0.000001,XnaiveX:0.000001):0.005800):0.000001,(308de1d739:0.011643,(ee25049b92:0.005819,9c3cedb840:0.002893):0.011684):0.000001):0.000001,5fb484a8a6:0.014574,(efdea248af:0.008730,18f4019708:0.014599):0.000001);
4
- (((9c3cedb840:0.002893,ee25049b92:0.005819):0.011684,5fb484a8a6:0.014574):0.000001,((((822801f8ab:0.000001,d024e5cab0:0.000001):0.000001,XnaiveX:0.000001):0.005800,(8024ed1a22:0.000001,(648902c3e5:0.000001,f47122f1f5:0.000001):0.000001):0.005797):0.000001,(efdea248af:0.008730,18f4019708:0.014599):0.000001):0.000001,308de1d739:0.011643);
5
- (efdea248af:0.008730,18f4019708:0.014599,((((XnaiveX:0.000001,d024e5cab0:0.000001):0.000001,822801f8ab:0.000001):0.005800,((648902c3e5:0.000001,8024ed1a22:0.000001):0.000001,f47122f1f5:0.000001):0.005797):0.000001,((5fb484a8a6:0.014574,(ee25049b92:0.005819,9c3cedb840:0.002893):0.011684):0.000001,308de1d739:0.011643):0.000001):0.000001);
6
- ((9c3cedb840:0.002893,ee25049b92:0.005819):0.011684,(((((f47122f1f5:0.000001,8024ed1a22:0.000001):0.000001,648902c3e5:0.000001):0.005797,efdea248af:0.008730):0.000001,(XnaiveX:0.000001,(822801f8ab:0.000001,d024e5cab0:0.000001):0.000001):0.005800):0.000001,(5fb484a8a6:0.014574,308de1d739:0.011643):0.000001):0.000001,18f4019708:0.014599);
7
- (efdea248af:0.008730,((8024ed1a22:0.000001,(648902c3e5:0.000001,f47122f1f5:0.000001):0.000001):0.005797,18f4019708:0.014599):0.000001,(((XnaiveX:0.000001,(822801f8ab:0.000001,d024e5cab0:0.000001):0.000001):0.005800,5fb484a8a6:0.014574):0.000001,((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,308de1d739:0.011643):0.000001):0.000001);
8
- (((((308de1d739:0.011643,efdea248af:0.008730):0.000001,(822801f8ab:0.000001,(XnaiveX:0.000001,d024e5cab0:0.000001):0.000001):0.005800):0.000001,(((8024ed1a22:0.000001,f47122f1f5:0.000001):0.000001,648902c3e5:0.000001):0.005797,5fb484a8a6:0.014574):0.000001):0.000001,18f4019708:0.014599):0.011684,9c3cedb840:0.002893,ee25049b92:0.005819);
9
- (f47122f1f5:0.000001,8024ed1a22:0.000001,(((((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,efdea248af:0.008730):0.000001,(((XnaiveX:0.000001,d024e5cab0:0.000001):0.000001,822801f8ab:0.000001):0.005800,18f4019708:0.014599):0.000001):0.000001,(308de1d739:0.011643,5fb484a8a6:0.014574):0.000001):0.005797,648902c3e5:0.000001):0.000001);
10
- ((9c3cedb840:0.002893,ee25049b92:0.005819):0.011684,18f4019708:0.014599,(((efdea248af:0.008730,308de1d739:0.011643):0.000001,(((8024ed1a22:0.000001,f47122f1f5:0.000001):0.000001,648902c3e5:0.000001):0.005797,((XnaiveX:0.000001,d024e5cab0:0.000001):0.000001,822801f8ab:0.000001):0.005800):0.000001):0.000001,5fb484a8a6:0.014574):0.000001);
11
- (((18f4019708:0.014599,5fb484a8a6:0.014574):0.000001,(((f47122f1f5:0.000001,648902c3e5:0.000001):0.000001,8024ed1a22:0.000001):0.005797,308de1d739:0.011643):0.000001):0.000001,(efdea248af:0.008730,(ee25049b92:0.005819,9c3cedb840:0.002893):0.011684):0.000001,((d024e5cab0:0.000001,822801f8ab:0.000001):0.000001,XnaiveX:0.000001):0.005800);
12
- (((((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,efdea248af:0.008730):0.000001,(308de1d739:0.011643,((822801f8ab:0.000001,d024e5cab0:0.000001):0.000001,XnaiveX:0.000001):0.005800):0.000001):0.000001,18f4019708:0.014599):0.000001,5fb484a8a6:0.014574,((648902c3e5:0.000001,f47122f1f5:0.000001):0.000001,8024ed1a22:0.000001):0.005797);
13
- ((((308de1d739:0.011643,5fb484a8a6:0.014574):0.000001,efdea248af:0.008730):0.000001,((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,((f47122f1f5:0.000001,648902c3e5:0.000001):0.000001,8024ed1a22:0.000001):0.005797):0.000001):0.000001,18f4019708:0.014599,((d024e5cab0:0.000001,XnaiveX:0.000001):0.000001,822801f8ab:0.000001):0.005800);
14
- ((((5fb484a8a6:0.014574,308de1d739:0.011643):0.000001,18f4019708:0.014599):0.000001,((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,efdea248af:0.008730):0.000001):0.000001,((8024ed1a22:0.000001,f47122f1f5:0.000001):0.000001,648902c3e5:0.000001):0.005797,((822801f8ab:0.000001,d024e5cab0:0.000001):0.000001,XnaiveX:0.000001):0.005800);
15
- (((((d024e5cab0:0.000001,XnaiveX:0.000001):0.000001,822801f8ab:0.000001):0.005800,(9c3cedb840:0.002893,ee25049b92:0.005819):0.011684):0.000001,((308de1d739:0.011643,5fb484a8a6:0.014574):0.000001,efdea248af:0.008730):0.000001):0.000001,18f4019708:0.014599,((f47122f1f5:0.000001,8024ed1a22:0.000001):0.000001,648902c3e5:0.000001):0.005797);
16
- (((((9c3cedb840:0.002893,ee25049b92:0.005819):0.011684,18f4019708:0.014599):0.000001,(((d024e5cab0:0.000001,822801f8ab:0.000001):0.000001,XnaiveX:0.000001):0.005800,efdea248af:0.008730):0.000001):0.000001,((8024ed1a22:0.000001,f47122f1f5:0.000001):0.000001,648902c3e5:0.000001):0.005797):0.000001,5fb484a8a6:0.014574,308de1d739:0.011643);
17
- ((((5fb484a8a6:0.014574,efdea248af:0.008730):0.000001,(9c3cedb840:0.002893,ee25049b92:0.005819):0.011684):0.000001,(18f4019708:0.014599,308de1d739:0.011643):0.000001):0.000001,((XnaiveX:0.000001,822801f8ab:0.000001):0.000001,d024e5cab0:0.000001):0.005800,((8024ed1a22:0.000001,648902c3e5:0.000001):0.000001,f47122f1f5:0.000001):0.005797);
18
- ((((((f47122f1f5:0.000001,8024ed1a22:0.000001):0.000001,648902c3e5:0.000001):0.005797,(ee25049b92:0.005819,9c3cedb840:0.002893):0.011684):0.000001,(efdea248af:0.008730,((822801f8ab:0.000001,XnaiveX:0.000001):0.000001,d024e5cab0:0.000001):0.005800):0.000001):0.000001,308de1d739:0.011643):0.000001,5fb484a8a6:0.014574,18f4019708:0.014599);
19
- ((648902c3e5:0.000001,f47122f1f5:0.000001):0.000001,8024ed1a22:0.000001,((((308de1d739:0.011643,((822801f8ab:0.000001,d024e5cab0:0.000001):0.000001,XnaiveX:0.000001):0.005800):0.000001,((9c3cedb840:0.002893,ee25049b92:0.005819):0.011684,18f4019708:0.014599):0.000001):0.000001,efdea248af:0.008730):0.000001,5fb484a8a6:0.014574):0.005797);
20
- ((((((5fb484a8a6:0.014574,308de1d739:0.011643):0.000001,(ee25049b92:0.005819,9c3cedb840:0.002893):0.011684):0.000001,((XnaiveX:0.000001,(822801f8ab:0.000001,d024e5cab0:0.000001):0.000001):0.005800,efdea248af:0.008730):0.000001):0.000001,18f4019708:0.014599):0.005797,8024ed1a22:0.000001):0.000001,648902c3e5:0.000001,f47122f1f5:0.000001);
1
+ (((648902c3e5:0.000001,f47122f1f5:0.000001):0.000001,8024ed1a22:0.000001):0.005797,18f4019708:0.014599,((5fb484a8a6:0.014574,efdea248af:0.008730):0.000001,(((822801f8ab:0.000001,XnaiveX:0.000001):0.000001,d024e5cab0:0.000001):0.005800,((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,308de1d739:0.011643):0.000001):0.000001):0.000001);
2
+ ((d024e5cab0:0.000001,(XnaiveX:0.000001,822801f8ab:0.000001):0.000001):0.005800,((((f47122f1f5:0.000001,648902c3e5:0.000001):0.000001,8024ed1a22:0.000001):0.005797,efdea248af:0.008730):0.000001,(5fb484a8a6:0.014574,18f4019708:0.014599):0.000001):0.000001,((9c3cedb840:0.002893,ee25049b92:0.005819):0.011684,308de1d739:0.011643):0.000001);
3
+ ((XnaiveX:0.000001,(((efdea248af:0.008730,18f4019708:0.014599):0.000001,(((f47122f1f5:0.000001,648902c3e5:0.000001):0.000001,8024ed1a22:0.000001):0.005797,5fb484a8a6:0.014574):0.000001):0.000001,((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,308de1d739:0.011643):0.000001):0.005800):0.000001,822801f8ab:0.000001,d024e5cab0:0.000001);
4
+ (5fb484a8a6:0.014574,18f4019708:0.014599,((((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,((XnaiveX:0.000001,822801f8ab:0.000001):0.000001,d024e5cab0:0.000001):0.005800):0.000001,(((f47122f1f5:0.000001,648902c3e5:0.000001):0.000001,8024ed1a22:0.000001):0.005797,308de1d739:0.011643):0.000001):0.000001,efdea248af:0.008730):0.000001);
5
+ (((efdea248af:0.008730,((822801f8ab:0.000001,d024e5cab0:0.000001):0.000001,XnaiveX:0.000001):0.005800):0.000001,((9c3cedb840:0.002893,ee25049b92:0.005819):0.011684,(648902c3e5:0.000001,(8024ed1a22:0.000001,f47122f1f5:0.000001):0.000001):0.005797):0.000001):0.000001,18f4019708:0.014599,(308de1d739:0.011643,5fb484a8a6:0.014574):0.000001);
6
+ ((308de1d739:0.011643,((XnaiveX:0.000001,d024e5cab0:0.000001):0.000001,822801f8ab:0.000001):0.005800):0.000001,((18f4019708:0.014600,(8024ed1a22:0.000001,(648902c3e5:0.000001,f47122f1f5:0.000001):0.000001):0.005797):0.000001,(ee25049b92:0.005819,9c3cedb840:0.002893):0.011684):0.000001,(efdea248af:0.008730,5fb484a8a6:0.014574):0.000001);
7
+ (((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,(efdea248af:0.008730,(f47122f1f5:0.000001,(8024ed1a22:0.000001,648902c3e5:0.000001):0.000001):0.005797):0.000001):0.000001,(5fb484a8a6:0.014574,308de1d739:0.011643):0.000001,((XnaiveX:0.000001,(822801f8ab:0.000001,d024e5cab0:0.000001):0.000001):0.005800,18f4019708:0.014599):0.000001);
8
+ (((((d024e5cab0:0.000001,XnaiveX:0.000001):0.000001,822801f8ab:0.000001):0.005800,((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,efdea248af:0.008730):0.000001):0.000001,(((648902c3e5:0.000001,f47122f1f5:0.000001):0.000001,8024ed1a22:0.000001):0.005797,308de1d739:0.011643):0.000001):0.000001,5fb484a8a6:0.014574,18f4019708:0.014599);
9
+ (((((648902c3e5:0.000001,8024ed1a22:0.000001):0.000001,f47122f1f5:0.000001):0.005797,18f4019708:0.014599):0.000001,((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,5fb484a8a6:0.014574):0.000001):0.000001,(308de1d739:0.011643,efdea248af:0.008730):0.000001,((d024e5cab0:0.000001,822801f8ab:0.000001):0.000001,XnaiveX:0.000001):0.005800);
10
+ (5fb484a8a6:0.014574,((((d024e5cab0:0.000001,822801f8ab:0.000001):0.000001,XnaiveX:0.000001):0.005800,efdea248af:0.008730):0.000001,((ee25049b92:0.005819,9c3cedb840:0.002893):0.011684,308de1d739:0.011643):0.000001):0.000001,(18f4019708:0.014599,((f47122f1f5:0.000001,648902c3e5:0.000001):0.000001,8024ed1a22:0.000001):0.005797):0.000001);
11
+ (9c3cedb840:0.002893,ee25049b92:0.005819,((((18f4019708:0.014599,efdea248af:0.008730):0.000001,((d024e5cab0:0.000001,822801f8ab:0.000001):0.000001,XnaiveX:0.000001):0.005800):0.000001,(308de1d739:0.011643,5fb484a8a6:0.014574):0.000001):0.000001,((f47122f1f5:0.000001,8024ed1a22:0.000001):0.000001,648902c3e5:0.000001):0.005797):0.011684);
12
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13
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+ (((((5fb484a8a6:0.100000,((648902c3e5:0.100000,f47122f1f5:0.100000):0.100000,8024ed1a22:0.100000):0.100000):0.100000,(ee25049b92:0.100000,9c3cedb840:0.100000):0.100000):0.100000,efdea248af:0.100000):0.100000,308de1d739:0.100000):0.100000,18f4019708:0.100000,((822801f8ab:0.100000,XnaiveX:0.100000):0.100000,d024e5cab0:0.100000):0.100000);
17
+ ((((((((f47122f1f5:0.100000,648902c3e5:0.100000):0.100000,8024ed1a22:0.100000):0.100000,5fb484a8a6:0.100000):0.100000,((d024e5cab0:0.100000,822801f8ab:0.100000):0.100000,XnaiveX:0.100000):0.100000):0.100000,efdea248af:0.100000):0.100000,308de1d739:0.100000):0.100000,18f4019708:0.100000):0.100000,9c3cedb840:0.100000,ee25049b92:0.100000);
18
+ (((((18f4019708:0.100000,5fb484a8a6:0.100000):0.100000,(9c3cedb840:0.100000,ee25049b92:0.100000):0.100000):0.100000,efdea248af:0.100000):0.100000,308de1d739:0.100000):0.100000,((d024e5cab0:0.100000,XnaiveX:0.100000):0.100000,822801f8ab:0.100000):0.100000,((8024ed1a22:0.100000,648902c3e5:0.100000):0.100000,f47122f1f5:0.100000):0.100000);
19
+ ((((((XnaiveX:0.100000,(822801f8ab:0.100000,d024e5cab0:0.100000):0.100000):0.100000,efdea248af:0.100000):0.100000,(9c3cedb840:0.100000,ee25049b92:0.100000):0.100000):0.100000,5fb484a8a6:0.100000):0.100000,18f4019708:0.100000):0.100000,((8024ed1a22:0.100000,f47122f1f5:0.100000):0.100000,648902c3e5:0.100000):0.100000,308de1d739:0.100000);
20
+ (((((((f47122f1f5:0.100000,648902c3e5:0.100000):0.100000,8024ed1a22:0.100000):0.100000,(9c3cedb840:0.100000,ee25049b92:0.100000):0.100000):0.100000,((822801f8ab:0.100000,d024e5cab0:0.100000):0.100000,XnaiveX:0.100000):0.100000):0.100000,efdea248af:0.100000):0.100000,308de1d739:0.100000):0.100000,5fb484a8a6:0.100000,18f4019708:0.100000);