megadetector 5.0.27__py3-none-any.whl → 5.0.29__py3-none-any.whl

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  1. megadetector/api/batch_processing/api_core/batch_service/score.py +4 -5
  2. megadetector/api/batch_processing/api_core_support/aggregate_results_manually.py +1 -1
  3. megadetector/api/batch_processing/api_support/summarize_daily_activity.py +1 -1
  4. megadetector/api/batch_processing/integration/digiKam/xmp_integration.py +2 -2
  5. megadetector/api/batch_processing/integration/eMammal/test_scripts/push_annotations_to_emammal.py +1 -1
  6. megadetector/api/batch_processing/integration/eMammal/test_scripts/select_images_for_testing.py +1 -1
  7. megadetector/api/synchronous/api_core/tests/load_test.py +2 -3
  8. megadetector/classification/aggregate_classifier_probs.py +3 -3
  9. megadetector/classification/analyze_failed_images.py +5 -5
  10. megadetector/classification/cache_batchapi_outputs.py +5 -5
  11. megadetector/classification/create_classification_dataset.py +11 -12
  12. megadetector/classification/crop_detections.py +10 -10
  13. megadetector/classification/csv_to_json.py +8 -8
  14. megadetector/classification/detect_and_crop.py +13 -15
  15. megadetector/classification/evaluate_model.py +7 -7
  16. megadetector/classification/identify_mislabeled_candidates.py +6 -6
  17. megadetector/classification/json_to_azcopy_list.py +1 -1
  18. megadetector/classification/json_validator.py +29 -32
  19. megadetector/classification/map_classification_categories.py +9 -9
  20. megadetector/classification/merge_classification_detection_output.py +12 -9
  21. megadetector/classification/prepare_classification_script.py +19 -19
  22. megadetector/classification/prepare_classification_script_mc.py +23 -23
  23. megadetector/classification/run_classifier.py +4 -4
  24. megadetector/classification/save_mislabeled.py +6 -6
  25. megadetector/classification/train_classifier.py +1 -1
  26. megadetector/classification/train_classifier_tf.py +9 -9
  27. megadetector/classification/train_utils.py +10 -10
  28. megadetector/data_management/annotations/annotation_constants.py +1 -1
  29. megadetector/data_management/camtrap_dp_to_coco.py +45 -45
  30. megadetector/data_management/cct_json_utils.py +101 -101
  31. megadetector/data_management/cct_to_md.py +49 -49
  32. megadetector/data_management/cct_to_wi.py +33 -33
  33. megadetector/data_management/coco_to_labelme.py +75 -75
  34. megadetector/data_management/coco_to_yolo.py +189 -189
  35. megadetector/data_management/databases/add_width_and_height_to_db.py +3 -2
  36. megadetector/data_management/databases/combine_coco_camera_traps_files.py +38 -38
  37. megadetector/data_management/databases/integrity_check_json_db.py +202 -188
  38. megadetector/data_management/databases/subset_json_db.py +33 -33
  39. megadetector/data_management/generate_crops_from_cct.py +38 -38
  40. megadetector/data_management/get_image_sizes.py +54 -49
  41. megadetector/data_management/labelme_to_coco.py +130 -124
  42. megadetector/data_management/labelme_to_yolo.py +78 -72
  43. megadetector/data_management/lila/create_lila_blank_set.py +81 -83
  44. megadetector/data_management/lila/create_lila_test_set.py +32 -31
  45. megadetector/data_management/lila/create_links_to_md_results_files.py +18 -18
  46. megadetector/data_management/lila/download_lila_subset.py +21 -24
  47. megadetector/data_management/lila/generate_lila_per_image_labels.py +91 -91
  48. megadetector/data_management/lila/get_lila_annotation_counts.py +30 -30
  49. megadetector/data_management/lila/get_lila_image_counts.py +22 -22
  50. megadetector/data_management/lila/lila_common.py +70 -70
  51. megadetector/data_management/lila/test_lila_metadata_urls.py +13 -14
  52. megadetector/data_management/mewc_to_md.py +339 -340
  53. megadetector/data_management/ocr_tools.py +258 -252
  54. megadetector/data_management/read_exif.py +232 -223
  55. megadetector/data_management/remap_coco_categories.py +26 -26
  56. megadetector/data_management/remove_exif.py +31 -20
  57. megadetector/data_management/rename_images.py +187 -187
  58. megadetector/data_management/resize_coco_dataset.py +41 -41
  59. megadetector/data_management/speciesnet_to_md.py +41 -41
  60. megadetector/data_management/wi_download_csv_to_coco.py +55 -55
  61. megadetector/data_management/yolo_output_to_md_output.py +117 -120
  62. megadetector/data_management/yolo_to_coco.py +195 -188
  63. megadetector/detection/change_detection.py +831 -0
  64. megadetector/detection/process_video.py +341 -338
  65. megadetector/detection/pytorch_detector.py +308 -266
  66. megadetector/detection/run_detector.py +186 -166
  67. megadetector/detection/run_detector_batch.py +366 -364
  68. megadetector/detection/run_inference_with_yolov5_val.py +328 -325
  69. megadetector/detection/run_tiled_inference.py +312 -253
  70. megadetector/detection/tf_detector.py +24 -24
  71. megadetector/detection/video_utils.py +291 -283
  72. megadetector/postprocessing/add_max_conf.py +15 -11
  73. megadetector/postprocessing/categorize_detections_by_size.py +44 -44
  74. megadetector/postprocessing/classification_postprocessing.py +808 -311
  75. megadetector/postprocessing/combine_batch_outputs.py +20 -21
  76. megadetector/postprocessing/compare_batch_results.py +528 -517
  77. megadetector/postprocessing/convert_output_format.py +97 -97
  78. megadetector/postprocessing/create_crop_folder.py +220 -147
  79. megadetector/postprocessing/detector_calibration.py +173 -168
  80. megadetector/postprocessing/generate_csv_report.py +508 -0
  81. megadetector/postprocessing/load_api_results.py +25 -22
  82. megadetector/postprocessing/md_to_coco.py +129 -98
  83. megadetector/postprocessing/md_to_labelme.py +89 -83
  84. megadetector/postprocessing/md_to_wi.py +40 -40
  85. megadetector/postprocessing/merge_detections.py +87 -114
  86. megadetector/postprocessing/postprocess_batch_results.py +319 -302
  87. megadetector/postprocessing/remap_detection_categories.py +36 -36
  88. megadetector/postprocessing/render_detection_confusion_matrix.py +205 -199
  89. megadetector/postprocessing/repeat_detection_elimination/find_repeat_detections.py +57 -57
  90. megadetector/postprocessing/repeat_detection_elimination/remove_repeat_detections.py +27 -28
  91. megadetector/postprocessing/repeat_detection_elimination/repeat_detections_core.py +702 -677
  92. megadetector/postprocessing/separate_detections_into_folders.py +226 -211
  93. megadetector/postprocessing/subset_json_detector_output.py +265 -262
  94. megadetector/postprocessing/top_folders_to_bottom.py +45 -45
  95. megadetector/postprocessing/validate_batch_results.py +70 -70
  96. megadetector/taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py +52 -52
  97. megadetector/taxonomy_mapping/map_new_lila_datasets.py +15 -15
  98. megadetector/taxonomy_mapping/prepare_lila_taxonomy_release.py +14 -14
  99. megadetector/taxonomy_mapping/preview_lila_taxonomy.py +66 -69
  100. megadetector/taxonomy_mapping/retrieve_sample_image.py +16 -16
  101. megadetector/taxonomy_mapping/simple_image_download.py +8 -8
  102. megadetector/taxonomy_mapping/species_lookup.py +33 -33
  103. megadetector/taxonomy_mapping/taxonomy_csv_checker.py +14 -14
  104. megadetector/taxonomy_mapping/taxonomy_graph.py +11 -11
  105. megadetector/taxonomy_mapping/validate_lila_category_mappings.py +13 -13
  106. megadetector/utils/azure_utils.py +22 -22
  107. megadetector/utils/ct_utils.py +1019 -200
  108. megadetector/utils/directory_listing.py +21 -77
  109. megadetector/utils/gpu_test.py +22 -22
  110. megadetector/utils/md_tests.py +541 -518
  111. megadetector/utils/path_utils.py +1511 -406
  112. megadetector/utils/process_utils.py +41 -41
  113. megadetector/utils/sas_blob_utils.py +53 -49
  114. megadetector/utils/split_locations_into_train_val.py +73 -60
  115. megadetector/utils/string_utils.py +147 -26
  116. megadetector/utils/url_utils.py +463 -173
  117. megadetector/utils/wi_utils.py +2629 -2868
  118. megadetector/utils/write_html_image_list.py +137 -137
  119. megadetector/visualization/plot_utils.py +21 -21
  120. megadetector/visualization/render_images_with_thumbnails.py +37 -73
  121. megadetector/visualization/visualization_utils.py +424 -404
  122. megadetector/visualization/visualize_db.py +197 -190
  123. megadetector/visualization/visualize_detector_output.py +126 -98
  124. {megadetector-5.0.27.dist-info → megadetector-5.0.29.dist-info}/METADATA +6 -3
  125. megadetector-5.0.29.dist-info/RECORD +163 -0
  126. {megadetector-5.0.27.dist-info → megadetector-5.0.29.dist-info}/WHEEL +1 -1
  127. megadetector/data_management/importers/add_nacti_sizes.py +0 -52
  128. megadetector/data_management/importers/add_timestamps_to_icct.py +0 -79
  129. megadetector/data_management/importers/animl_results_to_md_results.py +0 -158
  130. megadetector/data_management/importers/auckland_doc_test_to_json.py +0 -373
  131. megadetector/data_management/importers/auckland_doc_to_json.py +0 -201
  132. megadetector/data_management/importers/awc_to_json.py +0 -191
  133. megadetector/data_management/importers/bellevue_to_json.py +0 -272
  134. megadetector/data_management/importers/cacophony-thermal-importer.py +0 -793
  135. megadetector/data_management/importers/carrizo_shrubfree_2018.py +0 -269
  136. megadetector/data_management/importers/carrizo_trail_cam_2017.py +0 -289
  137. megadetector/data_management/importers/cct_field_adjustments.py +0 -58
  138. megadetector/data_management/importers/channel_islands_to_cct.py +0 -913
  139. megadetector/data_management/importers/eMammal/copy_and_unzip_emammal.py +0 -180
  140. megadetector/data_management/importers/eMammal/eMammal_helpers.py +0 -249
  141. megadetector/data_management/importers/eMammal/make_eMammal_json.py +0 -223
  142. megadetector/data_management/importers/ena24_to_json.py +0 -276
  143. megadetector/data_management/importers/filenames_to_json.py +0 -386
  144. megadetector/data_management/importers/helena_to_cct.py +0 -283
  145. megadetector/data_management/importers/idaho-camera-traps.py +0 -1407
  146. megadetector/data_management/importers/idfg_iwildcam_lila_prep.py +0 -294
  147. megadetector/data_management/importers/import_desert_lion_conservation_camera_traps.py +0 -387
  148. megadetector/data_management/importers/jb_csv_to_json.py +0 -150
  149. megadetector/data_management/importers/mcgill_to_json.py +0 -250
  150. megadetector/data_management/importers/missouri_to_json.py +0 -490
  151. megadetector/data_management/importers/nacti_fieldname_adjustments.py +0 -79
  152. megadetector/data_management/importers/noaa_seals_2019.py +0 -181
  153. megadetector/data_management/importers/osu-small-animals-to-json.py +0 -364
  154. megadetector/data_management/importers/pc_to_json.py +0 -365
  155. megadetector/data_management/importers/plot_wni_giraffes.py +0 -123
  156. megadetector/data_management/importers/prepare_zsl_imerit.py +0 -131
  157. megadetector/data_management/importers/raic_csv_to_md_results.py +0 -416
  158. megadetector/data_management/importers/rspb_to_json.py +0 -356
  159. megadetector/data_management/importers/save_the_elephants_survey_A.py +0 -320
  160. megadetector/data_management/importers/save_the_elephants_survey_B.py +0 -329
  161. megadetector/data_management/importers/snapshot_safari_importer.py +0 -758
  162. megadetector/data_management/importers/snapshot_serengeti_lila.py +0 -1067
  163. megadetector/data_management/importers/snapshotserengeti/make_full_SS_json.py +0 -150
  164. megadetector/data_management/importers/snapshotserengeti/make_per_season_SS_json.py +0 -153
  165. megadetector/data_management/importers/sulross_get_exif.py +0 -65
  166. megadetector/data_management/importers/timelapse_csv_set_to_json.py +0 -490
  167. megadetector/data_management/importers/ubc_to_json.py +0 -399
  168. megadetector/data_management/importers/umn_to_json.py +0 -507
  169. megadetector/data_management/importers/wellington_to_json.py +0 -263
  170. megadetector/data_management/importers/wi_to_json.py +0 -442
  171. megadetector/data_management/importers/zamba_results_to_md_results.py +0 -180
  172. megadetector/data_management/lila/add_locations_to_island_camera_traps.py +0 -101
  173. megadetector/data_management/lila/add_locations_to_nacti.py +0 -151
  174. megadetector-5.0.27.dist-info/RECORD +0 -208
  175. {megadetector-5.0.27.dist-info → megadetector-5.0.29.dist-info}/licenses/LICENSE +0 -0
  176. {megadetector-5.0.27.dist-info → megadetector-5.0.29.dist-info}/top_level.txt +0 -0

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