megadetector 5.0.10__py3-none-any.whl → 5.0.11__py3-none-any.whl
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- {megadetector-5.0.10.dist-info → megadetector-5.0.11.dist-info}/LICENSE +0 -0
- {megadetector-5.0.10.dist-info → megadetector-5.0.11.dist-info}/METADATA +12 -11
- megadetector-5.0.11.dist-info/RECORD +5 -0
- megadetector-5.0.11.dist-info/top_level.txt +1 -0
- api/__init__.py +0 -0
- api/batch_processing/__init__.py +0 -0
- api/batch_processing/api_core/__init__.py +0 -0
- api/batch_processing/api_core/batch_service/__init__.py +0 -0
- api/batch_processing/api_core/batch_service/score.py +0 -439
- api/batch_processing/api_core/server.py +0 -294
- api/batch_processing/api_core/server_api_config.py +0 -98
- api/batch_processing/api_core/server_app_config.py +0 -55
- api/batch_processing/api_core/server_batch_job_manager.py +0 -220
- api/batch_processing/api_core/server_job_status_table.py +0 -152
- api/batch_processing/api_core/server_orchestration.py +0 -360
- api/batch_processing/api_core/server_utils.py +0 -92
- api/batch_processing/api_core_support/__init__.py +0 -0
- api/batch_processing/api_core_support/aggregate_results_manually.py +0 -46
- api/batch_processing/api_support/__init__.py +0 -0
- api/batch_processing/api_support/summarize_daily_activity.py +0 -152
- api/batch_processing/data_preparation/__init__.py +0 -0
- api/batch_processing/data_preparation/manage_local_batch.py +0 -2391
- api/batch_processing/data_preparation/manage_video_batch.py +0 -327
- api/batch_processing/integration/digiKam/setup.py +0 -6
- api/batch_processing/integration/digiKam/xmp_integration.py +0 -465
- api/batch_processing/integration/eMammal/test_scripts/config_template.py +0 -5
- api/batch_processing/integration/eMammal/test_scripts/push_annotations_to_emammal.py +0 -126
- api/batch_processing/integration/eMammal/test_scripts/select_images_for_testing.py +0 -55
- api/batch_processing/postprocessing/__init__.py +0 -0
- api/batch_processing/postprocessing/add_max_conf.py +0 -64
- api/batch_processing/postprocessing/categorize_detections_by_size.py +0 -163
- api/batch_processing/postprocessing/combine_api_outputs.py +0 -249
- api/batch_processing/postprocessing/compare_batch_results.py +0 -958
- api/batch_processing/postprocessing/convert_output_format.py +0 -397
- api/batch_processing/postprocessing/load_api_results.py +0 -195
- api/batch_processing/postprocessing/md_to_coco.py +0 -310
- api/batch_processing/postprocessing/md_to_labelme.py +0 -330
- api/batch_processing/postprocessing/merge_detections.py +0 -401
- api/batch_processing/postprocessing/postprocess_batch_results.py +0 -1904
- api/batch_processing/postprocessing/remap_detection_categories.py +0 -170
- api/batch_processing/postprocessing/render_detection_confusion_matrix.py +0 -661
- api/batch_processing/postprocessing/repeat_detection_elimination/find_repeat_detections.py +0 -211
- api/batch_processing/postprocessing/repeat_detection_elimination/remove_repeat_detections.py +0 -82
- api/batch_processing/postprocessing/repeat_detection_elimination/repeat_detections_core.py +0 -1631
- api/batch_processing/postprocessing/separate_detections_into_folders.py +0 -731
- api/batch_processing/postprocessing/subset_json_detector_output.py +0 -696
- api/batch_processing/postprocessing/top_folders_to_bottom.py +0 -223
- api/synchronous/__init__.py +0 -0
- api/synchronous/api_core/animal_detection_api/__init__.py +0 -0
- api/synchronous/api_core/animal_detection_api/api_backend.py +0 -152
- api/synchronous/api_core/animal_detection_api/api_frontend.py +0 -266
- api/synchronous/api_core/animal_detection_api/config.py +0 -35
- api/synchronous/api_core/animal_detection_api/data_management/annotations/annotation_constants.py +0 -47
- api/synchronous/api_core/animal_detection_api/detection/detector_training/copy_checkpoints.py +0 -43
- api/synchronous/api_core/animal_detection_api/detection/detector_training/model_main_tf2.py +0 -114
- api/synchronous/api_core/animal_detection_api/detection/process_video.py +0 -543
- api/synchronous/api_core/animal_detection_api/detection/pytorch_detector.py +0 -304
- api/synchronous/api_core/animal_detection_api/detection/run_detector.py +0 -627
- api/synchronous/api_core/animal_detection_api/detection/run_detector_batch.py +0 -1029
- api/synchronous/api_core/animal_detection_api/detection/run_inference_with_yolov5_val.py +0 -581
- api/synchronous/api_core/animal_detection_api/detection/run_tiled_inference.py +0 -754
- api/synchronous/api_core/animal_detection_api/detection/tf_detector.py +0 -165
- api/synchronous/api_core/animal_detection_api/detection/video_utils.py +0 -495
- api/synchronous/api_core/animal_detection_api/md_utils/azure_utils.py +0 -174
- api/synchronous/api_core/animal_detection_api/md_utils/ct_utils.py +0 -262
- api/synchronous/api_core/animal_detection_api/md_utils/directory_listing.py +0 -251
- api/synchronous/api_core/animal_detection_api/md_utils/matlab_porting_tools.py +0 -97
- api/synchronous/api_core/animal_detection_api/md_utils/path_utils.py +0 -416
- api/synchronous/api_core/animal_detection_api/md_utils/process_utils.py +0 -110
- api/synchronous/api_core/animal_detection_api/md_utils/sas_blob_utils.py +0 -509
- api/synchronous/api_core/animal_detection_api/md_utils/string_utils.py +0 -59
- api/synchronous/api_core/animal_detection_api/md_utils/url_utils.py +0 -144
- api/synchronous/api_core/animal_detection_api/md_utils/write_html_image_list.py +0 -226
- api/synchronous/api_core/animal_detection_api/md_visualization/visualization_utils.py +0 -841
- api/synchronous/api_core/tests/__init__.py +0 -0
- api/synchronous/api_core/tests/load_test.py +0 -110
- classification/__init__.py +0 -0
- classification/aggregate_classifier_probs.py +0 -108
- classification/analyze_failed_images.py +0 -227
- classification/cache_batchapi_outputs.py +0 -198
- classification/create_classification_dataset.py +0 -627
- classification/crop_detections.py +0 -516
- classification/csv_to_json.py +0 -226
- classification/detect_and_crop.py +0 -855
- classification/efficientnet/__init__.py +0 -9
- classification/efficientnet/model.py +0 -415
- classification/efficientnet/utils.py +0 -610
- classification/evaluate_model.py +0 -520
- classification/identify_mislabeled_candidates.py +0 -152
- classification/json_to_azcopy_list.py +0 -63
- classification/json_validator.py +0 -695
- classification/map_classification_categories.py +0 -276
- classification/merge_classification_detection_output.py +0 -506
- classification/prepare_classification_script.py +0 -194
- classification/prepare_classification_script_mc.py +0 -228
- classification/run_classifier.py +0 -286
- classification/save_mislabeled.py +0 -110
- classification/train_classifier.py +0 -825
- classification/train_classifier_tf.py +0 -724
- classification/train_utils.py +0 -322
- data_management/__init__.py +0 -0
- data_management/annotations/__init__.py +0 -0
- data_management/annotations/annotation_constants.py +0 -34
- data_management/camtrap_dp_to_coco.py +0 -238
- data_management/cct_json_utils.py +0 -395
- data_management/cct_to_md.py +0 -176
- data_management/cct_to_wi.py +0 -289
- data_management/coco_to_labelme.py +0 -272
- data_management/coco_to_yolo.py +0 -662
- data_management/databases/__init__.py +0 -0
- data_management/databases/add_width_and_height_to_db.py +0 -33
- data_management/databases/combine_coco_camera_traps_files.py +0 -206
- data_management/databases/integrity_check_json_db.py +0 -477
- data_management/databases/subset_json_db.py +0 -115
- data_management/generate_crops_from_cct.py +0 -149
- data_management/get_image_sizes.py +0 -188
- data_management/importers/add_nacti_sizes.py +0 -52
- data_management/importers/add_timestamps_to_icct.py +0 -79
- data_management/importers/animl_results_to_md_results.py +0 -158
- data_management/importers/auckland_doc_test_to_json.py +0 -372
- data_management/importers/auckland_doc_to_json.py +0 -200
- data_management/importers/awc_to_json.py +0 -189
- data_management/importers/bellevue_to_json.py +0 -273
- data_management/importers/cacophony-thermal-importer.py +0 -796
- data_management/importers/carrizo_shrubfree_2018.py +0 -268
- data_management/importers/carrizo_trail_cam_2017.py +0 -287
- data_management/importers/cct_field_adjustments.py +0 -57
- data_management/importers/channel_islands_to_cct.py +0 -913
- data_management/importers/eMammal/copy_and_unzip_emammal.py +0 -180
- data_management/importers/eMammal/eMammal_helpers.py +0 -249
- data_management/importers/eMammal/make_eMammal_json.py +0 -223
- data_management/importers/ena24_to_json.py +0 -275
- data_management/importers/filenames_to_json.py +0 -385
- data_management/importers/helena_to_cct.py +0 -282
- data_management/importers/idaho-camera-traps.py +0 -1407
- data_management/importers/idfg_iwildcam_lila_prep.py +0 -294
- data_management/importers/jb_csv_to_json.py +0 -150
- data_management/importers/mcgill_to_json.py +0 -250
- data_management/importers/missouri_to_json.py +0 -489
- data_management/importers/nacti_fieldname_adjustments.py +0 -79
- data_management/importers/noaa_seals_2019.py +0 -181
- data_management/importers/pc_to_json.py +0 -365
- data_management/importers/plot_wni_giraffes.py +0 -123
- data_management/importers/prepare-noaa-fish-data-for-lila.py +0 -359
- data_management/importers/prepare_zsl_imerit.py +0 -131
- data_management/importers/rspb_to_json.py +0 -356
- data_management/importers/save_the_elephants_survey_A.py +0 -320
- data_management/importers/save_the_elephants_survey_B.py +0 -332
- data_management/importers/snapshot_safari_importer.py +0 -758
- data_management/importers/snapshot_safari_importer_reprise.py +0 -665
- data_management/importers/snapshot_serengeti_lila.py +0 -1067
- data_management/importers/snapshotserengeti/make_full_SS_json.py +0 -150
- data_management/importers/snapshotserengeti/make_per_season_SS_json.py +0 -153
- data_management/importers/sulross_get_exif.py +0 -65
- data_management/importers/timelapse_csv_set_to_json.py +0 -490
- data_management/importers/ubc_to_json.py +0 -399
- data_management/importers/umn_to_json.py +0 -507
- data_management/importers/wellington_to_json.py +0 -263
- data_management/importers/wi_to_json.py +0 -441
- data_management/importers/zamba_results_to_md_results.py +0 -181
- data_management/labelme_to_coco.py +0 -548
- data_management/labelme_to_yolo.py +0 -272
- data_management/lila/__init__.py +0 -0
- data_management/lila/add_locations_to_island_camera_traps.py +0 -97
- data_management/lila/add_locations_to_nacti.py +0 -147
- data_management/lila/create_lila_blank_set.py +0 -557
- data_management/lila/create_lila_test_set.py +0 -151
- data_management/lila/create_links_to_md_results_files.py +0 -106
- data_management/lila/download_lila_subset.py +0 -177
- data_management/lila/generate_lila_per_image_labels.py +0 -515
- data_management/lila/get_lila_annotation_counts.py +0 -170
- data_management/lila/get_lila_image_counts.py +0 -111
- data_management/lila/lila_common.py +0 -300
- data_management/lila/test_lila_metadata_urls.py +0 -132
- data_management/ocr_tools.py +0 -874
- data_management/read_exif.py +0 -681
- data_management/remap_coco_categories.py +0 -84
- data_management/remove_exif.py +0 -66
- data_management/resize_coco_dataset.py +0 -189
- data_management/wi_download_csv_to_coco.py +0 -246
- data_management/yolo_output_to_md_output.py +0 -441
- data_management/yolo_to_coco.py +0 -676
- detection/__init__.py +0 -0
- detection/detector_training/__init__.py +0 -0
- detection/detector_training/model_main_tf2.py +0 -114
- detection/process_video.py +0 -703
- detection/pytorch_detector.py +0 -337
- detection/run_detector.py +0 -779
- detection/run_detector_batch.py +0 -1219
- detection/run_inference_with_yolov5_val.py +0 -917
- detection/run_tiled_inference.py +0 -935
- detection/tf_detector.py +0 -188
- detection/video_utils.py +0 -606
- docs/source/conf.py +0 -43
- md_utils/__init__.py +0 -0
- md_utils/azure_utils.py +0 -174
- md_utils/ct_utils.py +0 -612
- md_utils/directory_listing.py +0 -246
- md_utils/md_tests.py +0 -968
- md_utils/path_utils.py +0 -1044
- md_utils/process_utils.py +0 -157
- md_utils/sas_blob_utils.py +0 -509
- md_utils/split_locations_into_train_val.py +0 -228
- md_utils/string_utils.py +0 -92
- md_utils/url_utils.py +0 -323
- md_utils/write_html_image_list.py +0 -225
- md_visualization/__init__.py +0 -0
- md_visualization/plot_utils.py +0 -293
- md_visualization/render_images_with_thumbnails.py +0 -275
- md_visualization/visualization_utils.py +0 -1537
- md_visualization/visualize_db.py +0 -551
- md_visualization/visualize_detector_output.py +0 -406
- megadetector-5.0.10.dist-info/RECORD +0 -224
- megadetector-5.0.10.dist-info/top_level.txt +0 -8
- taxonomy_mapping/__init__.py +0 -0
- taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py +0 -491
- taxonomy_mapping/map_new_lila_datasets.py +0 -154
- taxonomy_mapping/prepare_lila_taxonomy_release.py +0 -142
- taxonomy_mapping/preview_lila_taxonomy.py +0 -591
- taxonomy_mapping/retrieve_sample_image.py +0 -71
- taxonomy_mapping/simple_image_download.py +0 -218
- taxonomy_mapping/species_lookup.py +0 -834
- taxonomy_mapping/taxonomy_csv_checker.py +0 -159
- taxonomy_mapping/taxonomy_graph.py +0 -346
- taxonomy_mapping/validate_lila_category_mappings.py +0 -83
- {megadetector-5.0.10.dist-info → megadetector-5.0.11.dist-info}/WHEEL +0 -0
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########
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#%% Imports
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121
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# TODO: keep track of whether we created this folder, delete if we're deleting the extracted
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122
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# frames and we created the folder, and the output files aren't in the same folder. For now,
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123
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# we're just deleting the extracted frames and leaving the empty folder around in this case.
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os.makedirs(frame_output_folder, exist_ok=True)
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125
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126
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frame_filenames, Fs = video_to_frames(
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options.input_video_file, frame_output_folder,
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128
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every_n_frames=options.frame_sample, overwrite=(not options.reuse_frames_if_available))
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129
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-
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130
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image_file_names = frame_filenames
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131
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if options.debug_max_frames > 0:
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image_file_names = image_file_names[0:options.debug_max_frames]
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133
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-
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134
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if options.reuse_results_if_available and \
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135
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os.path.isfile(options.output_json_file):
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136
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print('Loading results from {}'.format(options.output_json_file))
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137
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with open(options.output_json_file,'r') as f:
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138
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results = json.load(f)
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139
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else:
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140
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results = run_detector_batch.load_and_run_detector_batch(
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141
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options.model_file, image_file_names,
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142
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confidence_threshold=options.json_confidence_threshold,
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143
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n_cores=options.n_cores,
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144
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quiet=(not options.verbose),
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145
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class_mapping_filename=options.class_mapping_filename)
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146
|
-
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147
|
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run_detector_batch.write_results_to_file(
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148
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results, options.output_json_file,
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149
|
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relative_path_base=frame_output_folder,
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150
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detector_file=options.model_file,
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151
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custom_metadata={'video_frame_rate':Fs})
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152
|
-
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153
|
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if options.render_output_video:
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154
|
-
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155
|
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# Render detections to images
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156
|
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if options.frame_rendering_folder is not None:
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157
|
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rendering_output_dir = options.frame_rendering_folder
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|
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else:
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159
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rendering_output_dir = os.path.join(
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160
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tempdir, os.path.basename(options.input_video_file) + '_detections')
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161
|
-
|
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162
|
-
# TODO: keep track of whether we created this folder, delete if we're deleting the rendered
|
|
163
|
-
# frames and we created the folder, and the output files aren't in the same folder. For now,
|
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164
|
-
# we're just deleting the rendered frames and leaving the empty folder around in this case.
|
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165
|
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os.makedirs(rendering_output_dir,exist_ok=True)
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166
|
-
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167
|
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detected_frame_files = visualize_detector_output.visualize_detector_output(
|
|
168
|
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detector_output_path=options.output_json_file,
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169
|
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out_dir=rendering_output_dir,
|
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170
|
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images_dir=frame_output_folder,
|
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171
|
-
confidence_threshold=options.rendering_confidence_threshold)
|
|
172
|
-
|
|
173
|
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# Combine into a video
|
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174
|
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print('Rendering video to {} at {} fps'.format(options.output_video_file,Fs))
|
|
175
|
-
frames_to_video(detected_frame_files, Fs, options.output_video_file, codec_spec=options.fourcc)
|
|
176
|
-
|
|
177
|
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# Delete the temporary directory we used for detection images
|
|
178
|
-
if not options.keep_rendered_frames:
|
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179
|
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try:
|
|
180
|
-
if options.force_rendered_frame_folder_deletion:
|
|
181
|
-
shutil.rmtree(rendering_output_dir)
|
|
182
|
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else:
|
|
183
|
-
for rendered_frame_fn in detected_frame_files:
|
|
184
|
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os.remove(rendered_frame_fn)
|
|
185
|
-
except Exception as e:
|
|
186
|
-
print('Warning: error deleting rendered frames from folder {}:\n{}'.format(
|
|
187
|
-
rendering_output_dir,str(e)))
|
|
188
|
-
pass
|
|
189
|
-
|
|
190
|
-
# (Optionally) delete the frames on which we ran MegaDetector
|
|
191
|
-
if not options.keep_extracted_frames:
|
|
192
|
-
try:
|
|
193
|
-
if options.force_extracted_frame_folder_deletion:
|
|
194
|
-
print('Recursively deleting frame output folder {}'.format(frame_output_folder))
|
|
195
|
-
shutil.rmtree(frame_output_folder)
|
|
196
|
-
else:
|
|
197
|
-
for extracted_frame_fn in frame_filenames:
|
|
198
|
-
os.remove(extracted_frame_fn)
|
|
199
|
-
except Exception as e:
|
|
200
|
-
print('Warning: error removing extracted frames from folder {}:\n{}'.format(
|
|
201
|
-
frame_output_folder,str(e)))
|
|
202
|
-
pass
|
|
203
|
-
|
|
204
|
-
return results
|
|
205
|
-
|
|
206
|
-
# ...process_video()
|
|
207
|
-
|
|
208
|
-
|
|
209
|
-
def process_video_folder(options):
|
|
210
|
-
"""
|
|
211
|
-
Process a folder of videos
|
|
212
|
-
"""
|
|
213
|
-
|
|
214
|
-
## Validate options
|
|
215
|
-
|
|
216
|
-
assert not options.render_output_video, \
|
|
217
|
-
'Video rendering is not supported when rendering a folder'
|
|
218
|
-
|
|
219
|
-
assert os.path.isdir(options.input_video_file), \
|
|
220
|
-
'{} is not a folder'.format(options.input_video_file)
|
|
221
|
-
|
|
222
|
-
assert options.output_json_file is not None, \
|
|
223
|
-
'When processing a folder, you must specify an output .json file'
|
|
224
|
-
|
|
225
|
-
assert options.output_json_file.endswith('.json')
|
|
226
|
-
video_json = options.output_json_file
|
|
227
|
-
frames_json = options.output_json_file.replace('.json','.frames.json')
|
|
228
|
-
os.makedirs(os.path.dirname(video_json),exist_ok=True)
|
|
229
|
-
|
|
230
|
-
|
|
231
|
-
## Split every video into frames
|
|
232
|
-
|
|
233
|
-
if options.frame_folder is not None:
|
|
234
|
-
frame_output_folder = options.frame_folder
|
|
235
|
-
else:
|
|
236
|
-
tempdir = os.path.join(tempfile.gettempdir(), 'process_camera_trap_video')
|
|
237
|
-
frame_output_folder = os.path.join(
|
|
238
|
-
tempdir, os.path.basename(options.input_video_file) + '_frames_' + str(uuid1()))
|
|
239
|
-
os.makedirs(frame_output_folder, exist_ok=True)
|
|
240
|
-
|
|
241
|
-
print('Extracting frames')
|
|
242
|
-
frame_filenames, Fs, video_filenames = \
|
|
243
|
-
video_folder_to_frames(input_folder=options.input_video_file,
|
|
244
|
-
output_folder_base=frame_output_folder,
|
|
245
|
-
recursive=options.recursive,
|
|
246
|
-
overwrite=(not options.reuse_frames_if_available),
|
|
247
|
-
n_threads=options.n_cores,every_n_frames=options.frame_sample,
|
|
248
|
-
verbose=options.verbose)
|
|
249
|
-
|
|
250
|
-
image_file_names = list(itertools.chain.from_iterable(frame_filenames))
|
|
251
|
-
|
|
252
|
-
if len(image_file_names) == 0:
|
|
253
|
-
if len(video_filenames) == 0:
|
|
254
|
-
print('No videos found in folder {}'.format(options.input_video_file))
|
|
255
|
-
else:
|
|
256
|
-
print('No frames extracted from folder {}, this may be due to an '\
|
|
257
|
-
'unsupported video codec'.format(options.input_video_file))
|
|
258
|
-
return
|
|
259
|
-
|
|
260
|
-
if options.debug_max_frames is not None and options.debug_max_frames > 0:
|
|
261
|
-
image_file_names = image_file_names[0:options.debug_max_frames]
|
|
262
|
-
|
|
263
|
-
|
|
264
|
-
## Run MegaDetector on the extracted frames
|
|
265
|
-
|
|
266
|
-
if options.reuse_results_if_available and \
|
|
267
|
-
os.path.isfile(frames_json):
|
|
268
|
-
print('Loading results from {}'.format(frames_json))
|
|
269
|
-
results = None
|
|
270
|
-
else:
|
|
271
|
-
print('Running MegaDetector')
|
|
272
|
-
results = run_detector_batch.load_and_run_detector_batch(
|
|
273
|
-
options.model_file, image_file_names,
|
|
274
|
-
confidence_threshold=options.json_confidence_threshold,
|
|
275
|
-
n_cores=options.n_cores,
|
|
276
|
-
quiet=(not options.verbose),
|
|
277
|
-
class_mapping_filename=options.class_mapping_filename)
|
|
278
|
-
|
|
279
|
-
run_detector_batch.write_results_to_file(
|
|
280
|
-
results, frames_json,
|
|
281
|
-
relative_path_base=frame_output_folder,
|
|
282
|
-
detector_file=options.model_file,
|
|
283
|
-
custom_metadata={'video_frame_rate':Fs})
|
|
284
|
-
|
|
285
|
-
|
|
286
|
-
## (Optionally) delete the frames on which we ran MegaDetector
|
|
287
|
-
|
|
288
|
-
if not options.keep_extracted_frames:
|
|
289
|
-
try:
|
|
290
|
-
print('Deleting frame cache')
|
|
291
|
-
if options.force_extracted_frame_folder_deletion:
|
|
292
|
-
print('Recursively deleting frame output folder {}'.format(frame_output_folder))
|
|
293
|
-
shutil.rmtree(frame_output_folder)
|
|
294
|
-
else:
|
|
295
|
-
for frame_fn in image_file_names:
|
|
296
|
-
os.remove(frame_fn)
|
|
297
|
-
except Exception as e:
|
|
298
|
-
print('Warning: error deleting frames from folder {}:\n{}'.format(
|
|
299
|
-
frame_output_folder,str(e)))
|
|
300
|
-
pass
|
|
301
|
-
|
|
302
|
-
|
|
303
|
-
## Convert frame-level results to video-level results
|
|
304
|
-
|
|
305
|
-
print('Converting frame-level results to video-level results')
|
|
306
|
-
frame_results_to_video_results(frames_json,video_json)
|
|
307
|
-
|
|
308
|
-
# ...process_video_folder()
|
|
309
|
-
|
|
310
|
-
|
|
311
|
-
def options_to_command(options):
|
|
312
|
-
|
|
313
|
-
cmd = 'python process_video.py'
|
|
314
|
-
cmd += ' "' + options.model_file + '"'
|
|
315
|
-
cmd += ' "' + options.input_video_file + '"'
|
|
316
|
-
|
|
317
|
-
if options.recursive:
|
|
318
|
-
cmd += ' --recursive'
|
|
319
|
-
if options.frame_folder is not None:
|
|
320
|
-
cmd += ' --frame_folder' + ' "' + options.frame_folder + '"'
|
|
321
|
-
if options.frame_rendering_folder is not None:
|
|
322
|
-
cmd += ' --frame_rendering_folder' + ' "' + options.frame_rendering_folder + '"'
|
|
323
|
-
if options.output_json_file is not None:
|
|
324
|
-
cmd += ' --output_json_file' + ' "' + options.output_json_file + '"'
|
|
325
|
-
if options.output_video_file is not None:
|
|
326
|
-
cmd += ' --output_video_file' + ' "' + options.output_video_file + '"'
|
|
327
|
-
if options.keep_extracted_frames:
|
|
328
|
-
cmd += ' --keep_extracted_frames'
|
|
329
|
-
if options.reuse_results_if_available:
|
|
330
|
-
cmd += ' --reuse_results_if_available'
|
|
331
|
-
if options.reuse_frames_if_available:
|
|
332
|
-
cmd += ' --reuse_frames_if_available'
|
|
333
|
-
if options.render_output_video:
|
|
334
|
-
cmd += ' --render_output_video'
|
|
335
|
-
if options.keep_rendered_frames:
|
|
336
|
-
cmd += ' --keep_rendered_frames'
|
|
337
|
-
if options.rendering_confidence_threshold is not None:
|
|
338
|
-
cmd += ' --rendering_confidence_threshold ' + str(options.rendering_confidence_threshold)
|
|
339
|
-
if options.json_confidence_threshold is not None:
|
|
340
|
-
cmd += ' --json_confidence_threshold ' + str(options.json_confidence_threshold)
|
|
341
|
-
if options.n_cores is not None:
|
|
342
|
-
cmd += ' --n_cores ' + str(options.n_cores)
|
|
343
|
-
if options.frame_sample is not None:
|
|
344
|
-
cmd += ' --frame_sample ' + str(options.frame_sample)
|
|
345
|
-
if options.debug_max_frames is not None:
|
|
346
|
-
cmd += ' --debug_max_frames ' + str(options.debug_max_frames)
|
|
347
|
-
if options.class_mapping_filename is not None:
|
|
348
|
-
cmd += ' --class_mapping_filename ' + str(options.class_mapping_filename)
|
|
349
|
-
if options.fourcc is not None:
|
|
350
|
-
cmd += ' --fourcc ' + options.fourcc
|
|
351
|
-
|
|
352
|
-
return cmd
|
|
353
|
-
|
|
354
|
-
|
|
355
|
-
#%% Interactive driver
|
|
356
|
-
|
|
357
|
-
if False:
|
|
358
|
-
|
|
359
|
-
#%% Process a folder of videos
|
|
360
|
-
|
|
361
|
-
model_file = os.path.expanduser('~/models/camera_traps/megadetector/md_v5.0.0/md_v5a.0.0.pt')
|
|
362
|
-
input_dir = r'g:\temp\test\input-video'
|
|
363
|
-
frame_folder = r'g:\temp\test\extracted-frames'
|
|
364
|
-
rendering_folder = r'g:\temp\test\rendered-frames'
|
|
365
|
-
output_json_file = r'g:\temp\test\output.json'
|
|
366
|
-
|
|
367
|
-
print('Processing folder {}'.format(input_dir))
|
|
368
|
-
|
|
369
|
-
options = ProcessVideoOptions()
|
|
370
|
-
options.model_file = model_file
|
|
371
|
-
options.input_video_file = input_dir
|
|
372
|
-
options.frame_folder = frame_folder
|
|
373
|
-
options.output_json_file = output_json_file
|
|
374
|
-
options.frame_rendering_folder = rendering_folder
|
|
375
|
-
|
|
376
|
-
cmd = options_to_command(options)
|
|
377
|
-
print(cmd)
|
|
378
|
-
# import clipboard; clipboard.copy(cmd)
|
|
379
|
-
|
|
380
|
-
if False:
|
|
381
|
-
process_video_folder(options)
|
|
382
|
-
|
|
383
|
-
|
|
384
|
-
#%% Process a single video
|
|
385
|
-
|
|
386
|
-
fn = os.path.expanduser('~/tmp/video-test/test-video.mp4')
|
|
387
|
-
model_file = os.path.expanduser('~/models/camera_traps/megadetector/md_v5.0.0/md_v5a.0.0.pt')
|
|
388
|
-
input_video_file = fn
|
|
389
|
-
frame_folder = os.path.expanduser('~/tmp/video-test/frames')
|
|
390
|
-
rendering_folder = os.path.expanduser('~/tmp/video-test/rendered-frames')
|
|
391
|
-
|
|
392
|
-
options = ProcessVideoOptions()
|
|
393
|
-
options.model_file = model_file
|
|
394
|
-
options.input_video_file = input_video_file
|
|
395
|
-
options.frame_folder = frame_folder
|
|
396
|
-
options.frame_rendering_folder = rendering_folder
|
|
397
|
-
options.render_output_video = True
|
|
398
|
-
options.output_video_file = os.path.expanduser('~/tmp/video-test/detections.mp4')
|
|
399
|
-
|
|
400
|
-
cmd = options_to_command(options)
|
|
401
|
-
print(cmd)
|
|
402
|
-
# import clipboard; clipboard.copy(cmd)
|
|
403
|
-
|
|
404
|
-
if False:
|
|
405
|
-
process_video(options)
|
|
406
|
-
|
|
407
|
-
|
|
408
|
-
#%% Render a folder of videos, one file at a time
|
|
409
|
-
|
|
410
|
-
model_file = os.path.expanduser('~/models/camera_traps/megadetector/md_v5.0.0/md_v5a.0.0.pt')
|
|
411
|
-
input_dir = os.path.expanduser('~/Downloads/bird-video')
|
|
412
|
-
frame_folder = os.path.expanduser('~/Downloads/bird-video-frames')
|
|
413
|
-
rendering_folder = os.path.expanduser('~/Downloads/bird-video-frames-rendered')
|
|
414
|
-
|
|
415
|
-
print('Processing folder {}'.format(input_dir))
|
|
416
|
-
|
|
417
|
-
options = ProcessVideoOptions()
|
|
418
|
-
options.model_file = model_file
|
|
419
|
-
options.frame_folder = frame_folder
|
|
420
|
-
options.frame_rendering_folder = rendering_folder
|
|
421
|
-
options.render_output_video = True
|
|
422
|
-
options.rendering_confidence_threshold = 0.01
|
|
423
|
-
options.fourcc = 'mp4v'
|
|
424
|
-
|
|
425
|
-
from detection import video_utils
|
|
426
|
-
video_files = video_utils.find_videos(input_dir)
|
|
427
|
-
video_files = [fn for fn in video_files if 'detections' not in fn]
|
|
428
|
-
|
|
429
|
-
commands = []
|
|
430
|
-
for video_fn in video_files:
|
|
431
|
-
options.input_video_file = video_fn
|
|
432
|
-
options.output_json_file = video_fn + '-md_results.json'
|
|
433
|
-
cmd = options_to_command(options)
|
|
434
|
-
commands.append(cmd)
|
|
435
|
-
|
|
436
|
-
s = '\n\n'.join(commands) + '\n\n'
|
|
437
|
-
print(s)
|
|
438
|
-
import clipboard; clipboard.copy(s)
|
|
439
|
-
|
|
440
|
-
|
|
441
|
-
|
|
442
|
-
#%% Command-line driver
|
|
443
|
-
|
|
444
|
-
def main():
|
|
445
|
-
|
|
446
|
-
parser = argparse.ArgumentParser(description=(
|
|
447
|
-
'Run MegaDetector on each frame in a video (or every Nth frame), optionally '\
|
|
448
|
-
'producing a new video with detections annotated'))
|
|
449
|
-
|
|
450
|
-
parser.add_argument('model_file', type=str,
|
|
451
|
-
help='MegaDetector model file')
|
|
452
|
-
|
|
453
|
-
parser.add_argument('input_video_file', type=str,
|
|
454
|
-
help='video file (or folder) to process')
|
|
455
|
-
|
|
456
|
-
parser.add_argument('--recursive', action='store_true',
|
|
457
|
-
help='recurse into [input_video_file]; only meaningful if a folder '\
|
|
458
|
-
'is specified as input')
|
|
459
|
-
|
|
460
|
-
parser.add_argument('--frame_folder', type=str, default=None,
|
|
461
|
-
help='folder to use for intermediate frame storage, defaults to a folder '\
|
|
462
|
-
'in the system temporary folder')
|
|
463
|
-
|
|
464
|
-
parser.add_argument('--frame_rendering_folder', type=str, default=None,
|
|
465
|
-
help='folder to use for rendered frame storage, defaults to a folder in '\
|
|
466
|
-
'the system temporary folder')
|
|
467
|
-
|
|
468
|
-
parser.add_argument('--output_json_file', type=str,
|
|
469
|
-
default=None, help='.json output file, defaults to [video file].json')
|
|
470
|
-
|
|
471
|
-
parser.add_argument('--output_video_file', type=str,
|
|
472
|
-
default=None, help='video output file (or folder), defaults to '\
|
|
473
|
-
'[video file].mp4 for files, or [video file]_annotated] for folders')
|
|
474
|
-
|
|
475
|
-
parser.add_argument('--keep_extracted_frames',
|
|
476
|
-
action='store_true', help='Disable the deletion of extracted frames')
|
|
477
|
-
|
|
478
|
-
parser.add_argument('--reuse_frames_if_available',
|
|
479
|
-
action='store_true', help="Don't extract frames that are already available in the frame extraction folder")
|
|
480
|
-
|
|
481
|
-
parser.add_argument('--reuse_results_if_available',
|
|
482
|
-
action='store_true', help='If the output .json files exists, and this flag is set,'\
|
|
483
|
-
'we\'ll skip running MegaDetector')
|
|
484
|
-
|
|
485
|
-
parser.add_argument('--render_output_video', action='store_true',
|
|
486
|
-
help='enable video output rendering (not rendered by default)')
|
|
487
|
-
|
|
488
|
-
parser.add_argument('--fourcc', default=None,
|
|
489
|
-
help='fourcc code to use for video encoding, only used if render_output_video is True')
|
|
490
|
-
|
|
491
|
-
parser.add_argument('--keep_rendered_frames',
|
|
492
|
-
action='store_true', help='Disable the deletion of rendered (w/boxes) frames')
|
|
493
|
-
|
|
494
|
-
parser.add_argument('--force_extracted_frame_folder_deletion',
|
|
495
|
-
action='store_true', help='By default, when keep_extracted_frames is False, we '\
|
|
496
|
-
'delete the frames, but leave the (probably-empty) folder in place. This option '\
|
|
497
|
-
'forces deletion of the folder as well. Use at your own risk; does not check '\
|
|
498
|
-
'whether other files were present in the folder.')
|
|
499
|
-
|
|
500
|
-
parser.add_argument('--force_rendered_frame_folder_deletion',
|
|
501
|
-
action='store_true', help='By default, when keep_rendered_frames is False, we '\
|
|
502
|
-
'delete the frames, but leave the (probably-empty) folder in place. This option '\
|
|
503
|
-
'forces deletion of the folder as well. Use at your own risk; does not check '\
|
|
504
|
-
'whether other files were present in the folder.')
|
|
505
|
-
|
|
506
|
-
parser.add_argument('--rendering_confidence_threshold', type=float,
|
|
507
|
-
default=0.8, help="don't render boxes with confidence below this threshold")
|
|
508
|
-
|
|
509
|
-
parser.add_argument('--json_confidence_threshold', type=float,
|
|
510
|
-
default=0.0, help="don't include boxes in the .json file with confidence "\
|
|
511
|
-
'below this threshold')
|
|
512
|
-
|
|
513
|
-
parser.add_argument('--n_cores', type=int,
|
|
514
|
-
default=1, help='number of cores to use for frame separation and detection. '\
|
|
515
|
-
'If using a GPU, this option will be respected for frame separation but '\
|
|
516
|
-
'ignored for detection. Only relevant to frame separation when processing '\
|
|
517
|
-
'a folder.')
|
|
518
|
-
|
|
519
|
-
parser.add_argument('--frame_sample', type=int,
|
|
520
|
-
default=None, help='process every Nth frame (defaults to every frame)')
|
|
521
|
-
|
|
522
|
-
parser.add_argument('--debug_max_frames', type=int,
|
|
523
|
-
default=-1, help='trim to N frames for debugging (impacts model execution, '\
|
|
524
|
-
'not frame rendering)')
|
|
525
|
-
|
|
526
|
-
parser.add_argument('--class_mapping_filename',
|
|
527
|
-
type=str,
|
|
528
|
-
default=None, help='Use a non-default class mapping, supplied in a .json file '\
|
|
529
|
-
'with a dictionary mapping int-strings to strings. This will also disable '\
|
|
530
|
-
'the addition of "1" to all category IDs, so your class mapping should start '\
|
|
531
|
-
'at zero.')
|
|
532
|
-
|
|
533
|
-
args = parser.parse_args()
|
|
534
|
-
options = ProcessVideoOptions()
|
|
535
|
-
args_to_object(args,options)
|
|
536
|
-
|
|
537
|
-
if os.path.isdir(options.input_video_file):
|
|
538
|
-
process_video_folder(options)
|
|
539
|
-
else:
|
|
540
|
-
process_video(options)
|
|
541
|
-
|
|
542
|
-
if __name__ == '__main__':
|
|
543
|
-
main()
|