endoreg-db 0.8.6.4__py3-none-any.whl
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- endoreg_db/__init__.py +0 -0
- endoreg_db/admin.py +92 -0
- endoreg_db/api/serializers/finding_descriptions.py +0 -0
- endoreg_db/api/views/finding_descriptions.py +0 -0
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +18 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +92 -0
- endoreg_db/config/__init__.py +0 -0
- endoreg_db/config/env.py +101 -0
- endoreg_db/data/__init__.py +144 -0
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/ai_model_label/label/data.yaml +88 -0
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
- endoreg_db/data/ai_model_type/data.yaml +7 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
- endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
- endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
- endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
- endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
- endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
- endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
- endoreg_db/data/case_template/rule_value/.init +0 -0
- endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
- endoreg_db/data/case_template/template/base.yaml +8 -0
- endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
- endoreg_db/data/case_template/tmp/_rule_value +13 -0
- endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
- endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
- endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
- endoreg_db/data/center/data.yaml +91 -0
- endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/cardiovascular.yaml +37 -0
- endoreg_db/data/disease/hepatology.yaml +5 -0
- endoreg_db/data/disease/misc.yaml +5 -0
- endoreg_db/data/disease/renal.yaml +5 -0
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
- endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
- endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
- endoreg_db/data/distribution/date/patient.yaml +7 -0
- endoreg_db/data/distribution/multiple_categorical/.init +0 -0
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
- endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/endoscope_type/data.yaml +11 -0
- endoreg_db/data/endoscopy_processor/data.yaml +50 -0
- endoreg_db/data/event/cardiology.yaml +15 -0
- endoreg_db/data/event/neurology.yaml +14 -0
- endoreg_db/data/event/surgery.yaml +13 -0
- endoreg_db/data/event/thrombembolism.yaml +20 -0
- endoreg_db/data/examination/examinations/data.yaml +72 -0
- endoreg_db/data/examination/time/data.yaml +48 -0
- endoreg_db/data/examination/time-type/data.yaml +8 -0
- endoreg_db/data/examination/type/data.yaml +17 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +424 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +160 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/anatomy_colon.yaml +128 -0
- endoreg_db/data/finding/colonoscopy.yaml +40 -0
- endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
- endoreg_db/data/finding/complication.yaml +16 -0
- endoreg_db/data/finding/data.yaml +105 -0
- endoreg_db/data/finding/examination_setting.yaml +16 -0
- endoreg_db/data/finding/medication_related.yaml +18 -0
- endoreg_db/data/finding/outcome.yaml +12 -0
- endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
- endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
- endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
- endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
- endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
- endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
- endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
- endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
- endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
- endoreg_db/data/finding_classification/medication_related.yaml +23 -0
- endoreg_db/data/finding_classification/visualized.yaml +33 -0
- endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +17 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +57 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +229 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
- endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
- endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
- endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
- endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
- endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
- endoreg_db/data/finding_intervention/endoscopy.yaml +43 -0
- endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
- endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
- endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
- endoreg_db/data/finding_type/data.yaml +43 -0
- endoreg_db/data/gender/data.yaml +42 -0
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/data.yaml +30 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/medication.yaml +6 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
- endoreg_db/data/lab_value/coagulation.yaml +54 -0
- endoreg_db/data/lab_value/electrolytes.yaml +228 -0
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
- endoreg_db/data/lab_value/hematology.yaml +184 -0
- endoreg_db/data/lab_value/hormones.yaml +59 -0
- endoreg_db/data/lab_value/lipids.yaml +53 -0
- endoreg_db/data/lab_value/misc.yaml +76 -0
- endoreg_db/data/lab_value/renal_function.yaml +12 -0
- endoreg_db/data/log_type/data.yaml +57 -0
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/material/material.yaml +91 -0
- endoreg_db/data/medication/anticoagulation.yaml +65 -0
- endoreg_db/data/medication/tah.yaml +70 -0
- endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
- endoreg_db/data/medication_indication_type/data.yaml +11 -0
- endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
- endoreg_db/data/medication_intake_time/base.yaml +31 -0
- endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
- endoreg_db/data/medication_schedule/ass.yaml +12 -0
- endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
- endoreg_db/data/names_first/first_names.yaml +54 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +59 -0
- endoreg_db/data/network_device_type/data.yaml +12 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
- endoreg_db/data/pdf_type/data.yaml +46 -0
- endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
- endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
- endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
- endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
- endoreg_db/data/profession/data.yaml +70 -0
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
- endoreg_db/data/requirement/age.yaml +26 -0
- endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/gender.yaml +25 -0
- endoreg_db/data/requirement/lab_value.yaml +441 -0
- endoreg_db/data/requirement/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/age.yaml +13 -0
- endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
- endoreg_db/data/requirement_set_type/data.yaml +20 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/setup_config.yaml +38 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift/m2.yaml +0 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
- endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
- endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
- endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
- endoreg_db/data/unit/concentration.yaml +115 -0
- endoreg_db/data/unit/data.yaml +17 -0
- endoreg_db/data/unit/length.yaml +31 -0
- endoreg_db/data/unit/misc.yaml +20 -0
- endoreg_db/data/unit/rate.yaml +6 -0
- endoreg_db/data/unit/time.yaml +48 -0
- endoreg_db/data/unit/volume.yaml +35 -0
- endoreg_db/data/unit/weight.yaml +38 -0
- endoreg_db/data/waste/data.yaml +12 -0
- endoreg_db/exceptions.py +19 -0
- endoreg_db/factories/__init__.py +0 -0
- endoreg_db/forms/__init__.py +5 -0
- endoreg_db/forms/examination_form.py +11 -0
- endoreg_db/forms/patient_finding_intervention_form.py +18 -0
- endoreg_db/forms/patient_form.py +27 -0
- endoreg_db/forms/questionnaires/__init__.py +1 -0
- endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
- endoreg_db/forms/settings/__init__.py +8 -0
- endoreg_db/forms/unit.py +6 -0
- endoreg_db/helpers/__init__.py +0 -0
- endoreg_db/helpers/count_db.py +45 -0
- endoreg_db/helpers/data_loader.py +208 -0
- endoreg_db/helpers/default_objects.py +378 -0
- endoreg_db/helpers/download_segmentation_model.py +31 -0
- endoreg_db/helpers/interact.py +6 -0
- endoreg_db/helpers/test_video_helper.py +119 -0
- endoreg_db/logger_conf.py +140 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +125 -0
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +115 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
- endoreg_db/management/commands/fix_video_paths.py +165 -0
- endoreg_db/management/commands/import_fallback_video.py +203 -0
- endoreg_db/management/commands/import_report.py +298 -0
- endoreg_db/management/commands/import_video.py +423 -0
- endoreg_db/management/commands/import_video_with_classification.py +367 -0
- endoreg_db/management/commands/init_default_ai_model.py +112 -0
- endoreg_db/management/commands/load_ai_model_data.py +77 -0
- endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
- endoreg_db/management/commands/load_base_db_data.py +192 -0
- endoreg_db/management/commands/load_center_data.py +68 -0
- endoreg_db/management/commands/load_contraindication_data.py +41 -0
- endoreg_db/management/commands/load_disease_classification_choices_data.py +41 -0
- endoreg_db/management/commands/load_disease_classification_data.py +41 -0
- endoreg_db/management/commands/load_disease_data.py +62 -0
- endoreg_db/management/commands/load_distribution_data.py +66 -0
- endoreg_db/management/commands/load_endoscope_data.py +68 -0
- endoreg_db/management/commands/load_event_data.py +41 -0
- endoreg_db/management/commands/load_examination_data.py +75 -0
- endoreg_db/management/commands/load_examination_indication_data.py +86 -0
- endoreg_db/management/commands/load_finding_data.py +128 -0
- endoreg_db/management/commands/load_gender_data.py +44 -0
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -0
- endoreg_db/management/commands/load_information_source.py +51 -0
- endoreg_db/management/commands/load_lab_value_data.py +50 -0
- endoreg_db/management/commands/load_medication_data.py +103 -0
- endoreg_db/management/commands/load_name_data.py +37 -0
- endoreg_db/management/commands/load_organ_data.py +43 -0
- endoreg_db/management/commands/load_pdf_type_data.py +61 -0
- endoreg_db/management/commands/load_profession_data.py +44 -0
- endoreg_db/management/commands/load_qualification_data.py +59 -0
- endoreg_db/management/commands/load_report_reader_flag_data.py +46 -0
- endoreg_db/management/commands/load_requirement_data.py +180 -0
- endoreg_db/management/commands/load_risk_data.py +56 -0
- endoreg_db/management/commands/load_shift_data.py +60 -0
- endoreg_db/management/commands/load_tag_data.py +57 -0
- endoreg_db/management/commands/load_unit_data.py +46 -0
- endoreg_db/management/commands/load_user_groups.py +28 -0
- endoreg_db/management/commands/register_ai_model.py +64 -0
- endoreg_db/management/commands/reset_celery_schedule.py +9 -0
- endoreg_db/management/commands/setup_endoreg_db.py +381 -0
- endoreg_db/management/commands/start_filewatcher.py +106 -0
- endoreg_db/management/commands/storage_management.py +548 -0
- endoreg_db/management/commands/summarize_db_content.py +189 -0
- endoreg_db/management/commands/validate_video.py +204 -0
- endoreg_db/management/commands/validate_video_files.py +161 -0
- endoreg_db/management/commands/video_validation.py +22 -0
- endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
- endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
- endoreg_db/mermaid/binary_classification_annotation.md +50 -0
- endoreg_db/mermaid/classification.md +8 -0
- endoreg_db/mermaid/examination.md +8 -0
- endoreg_db/mermaid/findings.md +7 -0
- endoreg_db/mermaid/image_classification.md +28 -0
- endoreg_db/mermaid/interventions.md +8 -0
- endoreg_db/mermaid/morphology.md +8 -0
- endoreg_db/mermaid/patient_creation.md +14 -0
- endoreg_db/mermaid/video_segmentation_annotation.md +17 -0
- endoreg_db/migrations/0001_initial.py +1857 -0
- endoreg_db/migrations/0002_add_video_correction_models.py +52 -0
- endoreg_db/migrations/0003_add_center_display_name.py +30 -0
- endoreg_db/migrations/__init__.py +0 -0
- endoreg_db/models/__init__.py +359 -0
- endoreg_db/models/administration/__init__.py +116 -0
- endoreg_db/models/administration/ai/__init__.py +9 -0
- endoreg_db/models/administration/ai/active_model.py +35 -0
- endoreg_db/models/administration/ai/ai_model.py +156 -0
- endoreg_db/models/administration/ai/model_type.py +41 -0
- endoreg_db/models/administration/case/__init__.py +19 -0
- endoreg_db/models/administration/case/case.py +114 -0
- endoreg_db/models/administration/case/case_template/__init__.py +15 -0
- endoreg_db/models/administration/case/case_template/case_template.py +125 -0
- endoreg_db/models/administration/case/case_template/case_template_rule.py +269 -0
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- endoreg_db/utils/product/sum_weights.py +18 -0
- endoreg_db/utils/pydantic_models/__init__.py +6 -0
- endoreg_db/utils/pydantic_models/db_config.py +57 -0
- endoreg_db/utils/requirement_helpers.py +0 -0
- endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
- endoreg_db/utils/requirement_operator_logic/lab_value_operators.py +578 -0
- endoreg_db/utils/requirement_operator_logic/model_evaluators.py +368 -0
- endoreg_db/utils/setup_config.py +177 -0
- endoreg_db/utils/translation.py +27 -0
- endoreg_db/utils/uuid.py +4 -0
- endoreg_db/utils/validate_endo_roi.py +19 -0
- endoreg_db/utils/validate_subcategory_dict.py +91 -0
- endoreg_db/utils/validate_video_detailed.py +357 -0
- endoreg_db/utils/video/__init__.py +26 -0
- endoreg_db/utils/video/extract_frames.py +88 -0
- endoreg_db/utils/video/ffmpeg_wrapper.py +835 -0
- endoreg_db/utils/video/names.py +42 -0
- endoreg_db/utils/video/streaming_processor.py +312 -0
- endoreg_db/utils/video/video_splitter.py +94 -0
- endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +238 -0
- endoreg_db/views/__init__.py +274 -0
- endoreg_db/views/anonymization/__init__.py +27 -0
- endoreg_db/views/anonymization/media_management.py +454 -0
- endoreg_db/views/anonymization/overview.py +216 -0
- endoreg_db/views/anonymization/validate.py +107 -0
- endoreg_db/views/auth/__init__.py +13 -0
- endoreg_db/views/auth/keycloak.py +113 -0
- endoreg_db/views/examination/__init__.py +33 -0
- endoreg_db/views/examination/examination.py +37 -0
- endoreg_db/views/examination/examination_manifest_cache.py +26 -0
- endoreg_db/views/examination/get_finding_classification_choices.py +59 -0
- endoreg_db/views/examination/get_finding_classifications.py +36 -0
- endoreg_db/views/examination/get_findings.py +41 -0
- endoreg_db/views/examination/get_instruments.py +18 -0
- endoreg_db/views/examination/get_interventions.py +14 -0
- endoreg_db/views/finding/__init__.py +9 -0
- endoreg_db/views/finding/finding.py +112 -0
- endoreg_db/views/finding/get_classifications.py +14 -0
- endoreg_db/views/finding/get_interventions.py +17 -0
- endoreg_db/views/finding_classification/__init__.py +13 -0
- endoreg_db/views/finding_classification/base.py +0 -0
- endoreg_db/views/finding_classification/finding_classification.py +42 -0
- endoreg_db/views/finding_classification/get_classification_choices.py +55 -0
- endoreg_db/views/label/__init__.py +5 -0
- endoreg_db/views/label/label.py +15 -0
- endoreg_db/views/label_video_segment/__init__.py +16 -0
- endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +44 -0
- endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +50 -0
- endoreg_db/views/label_video_segment/label_video_segment.py +77 -0
- endoreg_db/views/label_video_segment/label_video_segment_by_label.py +174 -0
- endoreg_db/views/label_video_segment/label_video_segment_detail.py +73 -0
- endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +46 -0
- endoreg_db/views/label_video_segment/validate.py +226 -0
- endoreg_db/views/media/__init__.py +45 -0
- endoreg_db/views/media/pdf_media.py +388 -0
- endoreg_db/views/media/segments.py +71 -0
- endoreg_db/views/media/sensitive_metadata.py +314 -0
- endoreg_db/views/media/video_media.py +272 -0
- endoreg_db/views/media/video_segments.py +524 -0
- endoreg_db/views/meta/__init__.py +15 -0
- endoreg_db/views/meta/available_files_list.py +146 -0
- endoreg_db/views/meta/report_meta.py +53 -0
- endoreg_db/views/meta/sensitive_meta_detail.py +148 -0
- endoreg_db/views/meta/sensitive_meta_list.py +104 -0
- endoreg_db/views/meta/sensitive_meta_verification.py +71 -0
- endoreg_db/views/misc/__init__.py +63 -0
- endoreg_db/views/misc/center.py +13 -0
- endoreg_db/views/misc/csrf.py +7 -0
- endoreg_db/views/misc/gender.py +14 -0
- endoreg_db/views/misc/secure_file_serving_view.py +80 -0
- endoreg_db/views/misc/secure_file_url_view.py +84 -0
- endoreg_db/views/misc/secure_url_validate.py +79 -0
- endoreg_db/views/misc/stats.py +220 -0
- endoreg_db/views/misc/translation.py +182 -0
- endoreg_db/views/misc/upload_views.py +240 -0
- endoreg_db/views/patient/__init__.py +5 -0
- endoreg_db/views/patient/patient.py +210 -0
- endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +164 -0
- endoreg_db/views/patient_examination/__init__.py +11 -0
- endoreg_db/views/patient_examination/patient_examination.py +140 -0
- endoreg_db/views/patient_examination/patient_examination_create.py +63 -0
- endoreg_db/views/patient_examination/patient_examination_detail.py +66 -0
- endoreg_db/views/patient_examination/patient_examination_list.py +68 -0
- endoreg_db/views/patient_examination/video.py +194 -0
- endoreg_db/views/patient_finding/__init__.py +7 -0
- endoreg_db/views/patient_finding/base.py +0 -0
- endoreg_db/views/patient_finding/patient_finding.py +64 -0
- endoreg_db/views/patient_finding/patient_finding_optimized.py +259 -0
- endoreg_db/views/patient_finding_classification/__init__.py +5 -0
- endoreg_db/views/patient_finding_classification/pfc_create.py +67 -0
- endoreg_db/views/patient_finding_location/__init__.py +5 -0
- endoreg_db/views/patient_finding_location/pfl_create.py +70 -0
- endoreg_db/views/patient_finding_morphology/__init__.py +5 -0
- endoreg_db/views/patient_finding_morphology/pfm_create.py +70 -0
- endoreg_db/views/pdf/__init__.py +8 -0
- endoreg_db/views/pdf/pdf_stream.py +186 -0
- endoreg_db/views/pdf/reimport.py +177 -0
- endoreg_db/views/report/__init__.py +9 -0
- endoreg_db/views/report/report_list.py +112 -0
- endoreg_db/views/report/report_with_secure_url.py +28 -0
- endoreg_db/views/report/start_examination.py +7 -0
- endoreg_db/views/requirement/__init__.py +10 -0
- endoreg_db/views/requirement/evaluate.py +279 -0
- endoreg_db/views/requirement/lookup.py +367 -0
- endoreg_db/views/requirement/lookup_store.py +252 -0
- endoreg_db/views/requirement_lookup/lookup.py +0 -0
- endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
- endoreg_db/views/stats/__init__.py +13 -0
- endoreg_db/views/stats/stats_views.py +229 -0
- endoreg_db/views/video/__init__.py +59 -0
- endoreg_db/views/video/correction.py +530 -0
- endoreg_db/views/video/reimport.py +195 -0
- endoreg_db/views/video/segmentation.py +274 -0
- endoreg_db/views/video/task_status.py +49 -0
- endoreg_db/views/video/timeline.py +46 -0
- endoreg_db/views/video/video_analyze.py +52 -0
- endoreg_db/views/video/video_apply_mask.py +48 -0
- endoreg_db/views/video/video_correction.py +21 -0
- endoreg_db/views/video/video_download_processed.py +58 -0
- endoreg_db/views/video/video_examination_viewset.py +242 -0
- endoreg_db/views/video/video_meta.py +29 -0
- endoreg_db/views/video/video_processing_history.py +24 -0
- endoreg_db/views/video/video_remove_frames.py +48 -0
- endoreg_db/views/video/video_stream.py +306 -0
- endoreg_db/views.py +0 -0
- endoreg_db-0.8.6.4.dist-info/METADATA +383 -0
- endoreg_db-0.8.6.4.dist-info/RECORD +793 -0
- endoreg_db-0.8.6.4.dist-info/WHEEL +4 -0
- endoreg_db-0.8.6.4.dist-info/licenses/LICENSE +674 -0
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# endoreg_db/views/media_management.py
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import logging
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from typing import Dict, Any
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from django.db import transaction
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from django.db.models import Q
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from numpy import delete
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from rest_framework import status
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from rest_framework.decorators import api_view, permission_classes
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from rest_framework.response import Response
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from rest_framework.views import APIView
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from django.utils import timezone
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from datetime import timedelta
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from endoreg_db.models import VideoFile, RawPdfFile, VideoState
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from endoreg_db.utils.permissions import DEBUG_PERMISSIONS
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logger = logging.getLogger(__name__)
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# ---------------------------------------------------------------------------
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# Media Cleanup and Management API
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# ---------------------------------------------------------------------------
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class MediaManagementView(APIView):
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"""
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Comprehensive Media Management API for cleanup and maintenance operations
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"""
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permission_classes = DEBUG_PERMISSIONS
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def get(self, request):
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"""
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GET /api/media-management/status/
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Get overview of media status and cleanup opportunities
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"""
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try:
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status_overview = self._get_status_overview()
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return Response(status_overview)
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except Exception as e:
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logger.error(f"Error getting media status overview: {e}")
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return Response(
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{"error": "Failed to get status overview"},
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status=status.HTTP_500_INTERNAL_SERVER_ERROR
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)
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def delete(self, request):
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"""
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DELETE /api/media-management/cleanup/
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Cleanup unfinished, failed, or stale media processing entries
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"""
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cleanup_type = request.query_params.get('type', 'unfinished')
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force = request.query_params.get('force', 'false').lower() == 'true'
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media_type = request.query_params.get('file_type', 'all')
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file_id = request.query_params.get('file_id', None)
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try:
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result = self._perform_cleanup(cleanup_type, force, media_type, file_id)
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return Response(result)
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except Exception as e:
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logger.error(f"Error during media cleanup: {e}")
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return Response(
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{"error": "Cleanup operation failed"},
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status=status.HTTP_500_INTERNAL_SERVER_ERROR
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)
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def _get_status_overview(self) -> Dict[str, Any]:
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"""Get comprehensive status overview"""
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video_stats = self._get_video_stats()
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pdf_stats = self._get_pdf_stats()
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# Stale processing detection (older than 2 hours)
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stale_threshold = timezone.now() - timedelta(hours=2)
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# Use VideoState boolean fields instead of non-existent name field
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stale_videos = VideoFile.objects.filter(
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uploaded_at__lt=stale_threshold,
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state__frames_extracted=True,
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state__sensitive_meta_processed=False
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).count()
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return {
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"videos": video_stats,
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"pdfs": pdf_stats,
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"cleanup_opportunities": {
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"stale_processing": stale_videos,
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"failed_videos": video_stats["failed"],
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"unfinished_total": video_stats["unfinished"] + pdf_stats["unfinished"]
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},
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"total_files": video_stats["total"] + pdf_stats["total"],
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"timestamp": timezone.now().isoformat()
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}
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def _get_video_stats(self) -> Dict[str, int]:
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"""Get video file statistics using VideoState boolean fields"""
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videos = VideoFile.objects.select_related('state').all()
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stats = {
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"total": videos.count(),
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"not_started": 0,
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"processing": 0,
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"done": 0,
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"failed": 0,
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"validated": 0,
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"unfinished": 0
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}
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for video in videos:
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if not video.state:
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stats["not_started"] += 1
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stats["unfinished"] += 1
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continue
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# Use the anonymization_status property
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video_status = video.state.anonymization_status
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if video_status.value == 'not_started':
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stats["not_started"] += 1
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stats["unfinished"] += 1
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elif video_status.value in ['extracting_frames', 'processing_anonymization']:
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stats["processing"] += 1
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stats["unfinished"] += 1
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elif video_status.value == 'done':
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stats["done"] += 1
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elif video_status.value == 'failed':
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stats["failed"] += 1
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stats["unfinished"] += 1
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elif video_status.value == 'validated':
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stats["validated"] += 1
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else:
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stats["unfinished"] += 1
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return stats
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def _get_pdf_stats(self) -> Dict[str, int]:
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"""Get PDF file statistics"""
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pdfs = RawPdfFile.objects.all()
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stats = {
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"total": pdfs.count(),
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"not_started": 0,
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"processing": 0,
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"done": 0,
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"failed": 0,
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"validated": 0,
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"unfinished": 0
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}
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for pdf in pdfs:
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# PDF status logic based on anonymized_text presence and validation
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has_anonymized = bool(pdf.anonymized_text and pdf.anonymized_text.strip())
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is_validated = getattr(pdf.sensitive_meta, 'is_verified', False) if pdf.sensitive_meta else False
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if not has_anonymized:
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stats["not_started"] += 1
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stats["unfinished"] += 1
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elif has_anonymized and is_validated:
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stats["validated"] += 1
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elif has_anonymized and not is_validated:
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stats["done"] += 1
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else:
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stats["unfinished"] += 1
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return stats
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def _perform_cleanup(self, cleanup_type: str, force: bool, media_type: str, file_id: int) -> Dict[str, Any]:
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"""Perform the actual cleanup operations"""
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result = {
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"cleanup_type": cleanup_type,
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"force": force,
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"removed_items": [],
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"summary": {}
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}
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if media_type not in ['video', 'pdf', 'all']:
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raise ValueError(f"Unknown media type: {media_type}")
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if file_id is not None:
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try:
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file_id = int(file_id)
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except ValueError:
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raise ValueError(f"Invalid file ID: {file_id}")
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video_file_obj = None
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pdf_file_obj = None
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if media_type == 'video':
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video_file_obj = VideoFile.get_video_by_id(self, video_id=file_id) if file_id else None
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elif media_type == 'pdf':
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pdf_file_obj = RawPdfFile.get_pdf_by_id(file_id) if file_id else None
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with transaction.atomic():
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if video_file_obj:
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video_file_obj.delete()
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if pdf_file_obj:
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pdf_file_obj.delete()
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if cleanup_type == 'unfinished':
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result.update(self._cleanup_unfinished_media(force))
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elif cleanup_type == 'failed':
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result.update(self._cleanup_failed_media(force))
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elif cleanup_type == 'stale':
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result.update(self._cleanup_stale_processing(force))
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elif cleanup_type == 'all':
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unfinished = self._cleanup_unfinished_media(force)
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failed = self._cleanup_failed_media(force)
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stale = self._cleanup_stale_processing(force)
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result["removed_items"] = (
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unfinished.get("removed_items", []) +
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failed.get("removed_items", []) +
|
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|
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stale.get("removed_items", [])
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)
|
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result["summary"] = {
|
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"unfinished": unfinished.get("summary", {}),
|
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"failed": failed.get("summary", {}),
|
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|
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"stale": stale.get("summary", {})
|
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|
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}
|
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|
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else:
|
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|
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raise ValueError(f"Unknown cleanup type: {cleanup_type}")
|
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|
+
|
|
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|
+
return result
|
|
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|
+
|
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|
+
def _cleanup_unfinished_media(self, force: bool) -> Dict[str, Any]:
|
|
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|
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"""Remove unfinished media processing entries"""
|
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|
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removed_videos = []
|
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|
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removed_pdfs = []
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|
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|
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# Find unfinished videos using VideoState boolean fields
|
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|
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unfinished_videos = VideoFile.objects.select_related('state').all()
|
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|
+
|
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231
|
+
for video in unfinished_videos:
|
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if not video.state:
|
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|
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if force: # Only remove videos without state if force=True
|
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|
+
removed_videos.append({
|
|
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|
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"id": video.id,
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"type": "video",
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"filename": video.original_file_name,
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"status": "no_state",
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"uploaded_at": video.uploaded_at.isoformat()
|
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})
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video.delete()
|
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continue
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+
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244
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video_status = video.state.anonymization_status
|
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|
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is_unfinished = video_status.value in ['not_started', 'extracting_frames', 'processing_anonymization', 'failed']
|
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|
+
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|
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# Remove unfinished videos
|
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if is_unfinished and (force or video_status.value != 'not_started'):
|
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|
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removed_videos.append({
|
|
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|
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"id": video.id,
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"type": "video",
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|
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"filename": video.original_file_name,
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"status": video_status.value,
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"uploaded_at": video.uploaded_at.isoformat()
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})
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|
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|
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if force:
|
|
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|
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video.delete()
|
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|
+
|
|
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|
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# Return the results
|
|
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|
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return {
|
|
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|
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"removed_items": removed_videos + removed_pdfs,
|
|
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|
+
"summary": {
|
|
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|
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"videos_removed": len(removed_videos),
|
|
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|
+
"pdfs_removed": len(removed_pdfs),
|
|
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|
+
"total_removed": len(removed_videos) + len(removed_pdfs),
|
|
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|
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"dry_run": not force
|
|
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|
+
}
|
|
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|
+
}
|
|
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|
+
|
|
270
|
+
def _cleanup_failed_media(self, force: bool) -> Dict[str, Any]:
|
|
271
|
+
"""Remove failed media processing entries"""
|
|
272
|
+
removed_items = []
|
|
273
|
+
|
|
274
|
+
# Find failed videos using VideoState boolean fields
|
|
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|
+
failed_videos = VideoFile.objects.select_related('state').all()
|
|
276
|
+
|
|
277
|
+
for video in failed_videos:
|
|
278
|
+
if video.state and video.state.anonymization_status.value == 'failed':
|
|
279
|
+
removed_items.append({
|
|
280
|
+
"id": video.id,
|
|
281
|
+
"type": "video",
|
|
282
|
+
"filename": video.original_file_name,
|
|
283
|
+
"status": "failed",
|
|
284
|
+
"uploaded_at": video.uploaded_at.isoformat()
|
|
285
|
+
})
|
|
286
|
+
if force:
|
|
287
|
+
video.delete()
|
|
288
|
+
|
|
289
|
+
if force:
|
|
290
|
+
# Count actual deletions
|
|
291
|
+
videos_deleted = len([v for v in removed_items if v["type"] == "video"])
|
|
292
|
+
return {
|
|
293
|
+
"removed_items": removed_items,
|
|
294
|
+
"summary": {
|
|
295
|
+
"videos_removed": videos_deleted,
|
|
296
|
+
"total_removed": videos_deleted,
|
|
297
|
+
"dry_run": False
|
|
298
|
+
}
|
|
299
|
+
}
|
|
300
|
+
else:
|
|
301
|
+
return {
|
|
302
|
+
"removed_items": removed_items,
|
|
303
|
+
"summary": {
|
|
304
|
+
"videos_removed": len(removed_items),
|
|
305
|
+
"total_removed": len(removed_items),
|
|
306
|
+
"dry_run": True
|
|
307
|
+
}
|
|
308
|
+
}
|
|
309
|
+
|
|
310
|
+
def _cleanup_stale_processing(self, force: bool) -> Dict[str, Any]:
|
|
311
|
+
"""Remove stale processing entries (older than 2 hours)"""
|
|
312
|
+
stale_threshold = timezone.now() - timedelta(hours=2)
|
|
313
|
+
removed_items = []
|
|
314
|
+
|
|
315
|
+
# Find stale videos using VideoState boolean fields
|
|
316
|
+
stale_videos = VideoFile.objects.filter(
|
|
317
|
+
uploaded_at__lt=stale_threshold,
|
|
318
|
+
state__frames_extracted=True,
|
|
319
|
+
state__sensitive_meta_processed=False
|
|
320
|
+
).select_related('state')
|
|
321
|
+
|
|
322
|
+
for video in stale_videos:
|
|
323
|
+
video_status = video.state.anonymization_status if video.state else "no_state"
|
|
324
|
+
removed_items.append({
|
|
325
|
+
"id": video.id,
|
|
326
|
+
"type": "video",
|
|
327
|
+
"filename": video.original_file_name,
|
|
328
|
+
"status": f"stale_{video_status.value if hasattr(video_status, 'value') else video_status}",
|
|
329
|
+
"uploaded_at": video.uploaded_at.isoformat(),
|
|
330
|
+
"stale_duration_hours": (timezone.now() - video.uploaded_at).total_seconds() / 3600
|
|
331
|
+
})
|
|
332
|
+
|
|
333
|
+
if force:
|
|
334
|
+
videos_deleted = stale_videos.delete()[0]
|
|
335
|
+
return {
|
|
336
|
+
"removed_items": removed_items,
|
|
337
|
+
"summary": {
|
|
338
|
+
"stale_videos_removed": videos_deleted,
|
|
339
|
+
"total_removed": videos_deleted,
|
|
340
|
+
"dry_run": False
|
|
341
|
+
}
|
|
342
|
+
}
|
|
343
|
+
else:
|
|
344
|
+
return {
|
|
345
|
+
"removed_items": removed_items,
|
|
346
|
+
"summary": {
|
|
347
|
+
"stale_videos_removed": len(removed_items),
|
|
348
|
+
"total_removed": len(removed_items),
|
|
349
|
+
"dry_run": True
|
|
350
|
+
}
|
|
351
|
+
}
|
|
352
|
+
|
|
353
|
+
|
|
354
|
+
@api_view(['DELETE'])
|
|
355
|
+
@permission_classes(DEBUG_PERMISSIONS)
|
|
356
|
+
def force_remove_media(request, file_id: int):
|
|
357
|
+
"""
|
|
358
|
+
DELETE /api/media-management/force-remove/{file_id}/
|
|
359
|
+
Force remove a specific media item regardless of status
|
|
360
|
+
"""
|
|
361
|
+
try:
|
|
362
|
+
# Try to find and delete from VideoFile first
|
|
363
|
+
try:
|
|
364
|
+
video = VideoFile.objects.get(id=file_id)
|
|
365
|
+
filename = video.original_file_name
|
|
366
|
+
video.delete()
|
|
367
|
+
|
|
368
|
+
return Response({
|
|
369
|
+
"detail": f"Video file '{filename}' (ID: {file_id}) removed successfully",
|
|
370
|
+
"file_type": "video",
|
|
371
|
+
"file_id": file_id
|
|
372
|
+
})
|
|
373
|
+
except VideoFile.DoesNotExist:
|
|
374
|
+
pass
|
|
375
|
+
|
|
376
|
+
# Try to find and delete from RawPdfFile
|
|
377
|
+
try:
|
|
378
|
+
pdf = RawPdfFile.objects.get(id=file_id)
|
|
379
|
+
filename = getattr(pdf.file, 'name', 'Unknown')
|
|
380
|
+
pdf.delete()
|
|
381
|
+
|
|
382
|
+
return Response({
|
|
383
|
+
"detail": f"PDF file '{filename}' (ID: {file_id}) removed successfully",
|
|
384
|
+
"file_type": "pdf",
|
|
385
|
+
"file_id": file_id
|
|
386
|
+
})
|
|
387
|
+
except RawPdfFile.DoesNotExist:
|
|
388
|
+
pass
|
|
389
|
+
|
|
390
|
+
return Response(
|
|
391
|
+
{"detail": "File not found"},
|
|
392
|
+
status=status.HTTP_404_NOT_FOUND
|
|
393
|
+
)
|
|
394
|
+
|
|
395
|
+
except Exception as e:
|
|
396
|
+
logger.error(f"Error force removing media {file_id}: {e}")
|
|
397
|
+
return Response(
|
|
398
|
+
{"error": "Force removal failed"},
|
|
399
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR
|
|
400
|
+
)
|
|
401
|
+
|
|
402
|
+
|
|
403
|
+
@api_view(['POST'])
|
|
404
|
+
@permission_classes(DEBUG_PERMISSIONS)
|
|
405
|
+
def reset_processing_status(request, file_id: int):
|
|
406
|
+
"""
|
|
407
|
+
POST /api/media-management/reset-status/{file_id}/
|
|
408
|
+
Reset processing status for a stuck/failed media item
|
|
409
|
+
"""
|
|
410
|
+
try:
|
|
411
|
+
# Try VideoFile first
|
|
412
|
+
try:
|
|
413
|
+
video = VideoFile.objects.get(id=file_id)
|
|
414
|
+
|
|
415
|
+
# Reset to 'not_started' state
|
|
416
|
+
not_started_state, created = VideoState.objects.get_or_create(name='not_started')
|
|
417
|
+
video.state = not_started_state
|
|
418
|
+
video.save()
|
|
419
|
+
|
|
420
|
+
return Response({
|
|
421
|
+
"detail": "Video file status reset to 'not_started'",
|
|
422
|
+
"file_type": "video",
|
|
423
|
+
"file_id": file_id,
|
|
424
|
+
"new_status": "not_started"
|
|
425
|
+
})
|
|
426
|
+
except VideoFile.DoesNotExist:
|
|
427
|
+
pass
|
|
428
|
+
|
|
429
|
+
# PDF files don't have state, but we can clear anonymized_text
|
|
430
|
+
try:
|
|
431
|
+
pdf = RawPdfFile.objects.get(id=file_id)
|
|
432
|
+
pdf.anonymized_text = ""
|
|
433
|
+
pdf.save()
|
|
434
|
+
|
|
435
|
+
return Response({
|
|
436
|
+
"detail": "PDF file processing reset",
|
|
437
|
+
"file_type": "pdf",
|
|
438
|
+
"file_id": file_id,
|
|
439
|
+
"new_status": "not_started"
|
|
440
|
+
})
|
|
441
|
+
except RawPdfFile.DoesNotExist:
|
|
442
|
+
pass
|
|
443
|
+
|
|
444
|
+
return Response(
|
|
445
|
+
{"detail": "File not found"},
|
|
446
|
+
status=status.HTTP_404_NOT_FOUND
|
|
447
|
+
)
|
|
448
|
+
|
|
449
|
+
except Exception as e:
|
|
450
|
+
logger.error(f"Error resetting status for media {file_id}: {e}")
|
|
451
|
+
return Response(
|
|
452
|
+
{"error": "Status reset failed"},
|
|
453
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR
|
|
454
|
+
)
|
|
@@ -0,0 +1,216 @@
|
|
|
1
|
+
# endoreg_db/api/views/anonymization_overview.py
|
|
2
|
+
|
|
3
|
+
from rest_framework import status
|
|
4
|
+
from rest_framework.decorators import api_view, permission_classes
|
|
5
|
+
from rest_framework.response import Response
|
|
6
|
+
from endoreg_db.utils.permissions import DEBUG_PERMISSIONS
|
|
7
|
+
from endoreg_db.services.anonymization import AnonymizationService
|
|
8
|
+
from endoreg_db.services.polling_coordinator import PollingCoordinator, ProcessingLockContext
|
|
9
|
+
from rest_framework.generics import ListAPIView
|
|
10
|
+
from rest_framework.pagination import PageNumberPagination
|
|
11
|
+
from endoreg_db.models import VideoFile, RawPdfFile
|
|
12
|
+
from ...serializers import FileOverviewSerializer, VoPPatientDataSerializer
|
|
13
|
+
from django.http import JsonResponse
|
|
14
|
+
import logging
|
|
15
|
+
logger = logging.getLogger(__name__)
|
|
16
|
+
PERMS = DEBUG_PERMISSIONS # shorten
|
|
17
|
+
|
|
18
|
+
# ---------- overview ----------------------------------------------------
|
|
19
|
+
class NoPagination(PageNumberPagination):
|
|
20
|
+
page_size = None
|
|
21
|
+
|
|
22
|
+
|
|
23
|
+
class AnonymizationOverviewView(ListAPIView):
|
|
24
|
+
"""
|
|
25
|
+
GET /api/anonymization/items/overview/
|
|
26
|
+
--------------------------------------
|
|
27
|
+
Returns a flat list (Video + PDF) ordered by newest upload first.
|
|
28
|
+
"""
|
|
29
|
+
serializer_class = FileOverviewSerializer
|
|
30
|
+
permission_classes = DEBUG_PERMISSIONS
|
|
31
|
+
pagination_class = NoPagination
|
|
32
|
+
|
|
33
|
+
def get_queryset(self):
|
|
34
|
+
"""
|
|
35
|
+
Returns a combined queryset of VideoFile and RawPdfFile instances.
|
|
36
|
+
"""
|
|
37
|
+
# 1) VideoFile queryset - only fields that exist on VideoFile
|
|
38
|
+
qs_video = (
|
|
39
|
+
VideoFile.objects
|
|
40
|
+
.select_related("state", "sensitive_meta")
|
|
41
|
+
.prefetch_related("label_video_segments__state")
|
|
42
|
+
.only("id", "original_file_name", "raw_file", "uploaded_at", "state", "sensitive_meta")
|
|
43
|
+
)
|
|
44
|
+
# 2) RawPdfFile queryset - only fields that exist on RawPdfFile
|
|
45
|
+
qs_pdf = (
|
|
46
|
+
RawPdfFile.objects
|
|
47
|
+
.select_related("sensitive_meta")
|
|
48
|
+
.only("id", "file", "date_created",
|
|
49
|
+
"text", "anonymized_text",
|
|
50
|
+
"sensitive_meta")
|
|
51
|
+
|
|
52
|
+
)
|
|
53
|
+
|
|
54
|
+
return list(qs_video) + list(qs_pdf)
|
|
55
|
+
|
|
56
|
+
# ---------- status with polling protection ------------------------------
|
|
57
|
+
@api_view(["GET"])
|
|
58
|
+
@permission_classes(PERMS)
|
|
59
|
+
def anonymization_status(request, file_id: int):
|
|
60
|
+
"""
|
|
61
|
+
Get anonymization status with polling rate limiting.
|
|
62
|
+
"""
|
|
63
|
+
# Ermittele erst den echten Typ und Status
|
|
64
|
+
info = AnonymizationService.get_status(file_id)
|
|
65
|
+
if not info:
|
|
66
|
+
return Response({"detail": "File not found"}, status=status.HTTP_404_NOT_FOUND)
|
|
67
|
+
|
|
68
|
+
file_type = info.get("mediaType") or info.get("type") or "video"
|
|
69
|
+
|
|
70
|
+
# Wende Rate-Limiting auf den echten Typ an (nicht auf einen evtl. falschen request-Parameter)
|
|
71
|
+
if not PollingCoordinator.can_check_status(file_id, file_type):
|
|
72
|
+
remaining_seconds = PollingCoordinator.get_remaining_cooldown_seconds(file_id, file_type)
|
|
73
|
+
response_data = {
|
|
74
|
+
"detail": "Status check rate limited. Please wait before checking again.",
|
|
75
|
+
"file_id": file_id,
|
|
76
|
+
"cooldown_active": True,
|
|
77
|
+
"retry_after": remaining_seconds
|
|
78
|
+
}
|
|
79
|
+
response = Response(response_data, status=status.HTTP_429_TOO_MANY_REQUESTS)
|
|
80
|
+
response["Retry-After"] = str(remaining_seconds)
|
|
81
|
+
return response
|
|
82
|
+
|
|
83
|
+
status_val = info.get("anonymizationStatus") or info.get("status") or "not_started"
|
|
84
|
+
|
|
85
|
+
# processing_locked als Ableitung des Status interpretieren
|
|
86
|
+
processing_statuses = {"processing_anonymization", "extracting_frames", "predicting_segments"}
|
|
87
|
+
processing_locked_derived = status_val in processing_statuses
|
|
88
|
+
|
|
89
|
+
return Response({
|
|
90
|
+
"file_id": file_id,
|
|
91
|
+
"file_type": file_type,
|
|
92
|
+
"anonymizationStatus": status_val,
|
|
93
|
+
"processing_locked": processing_locked_derived,
|
|
94
|
+
})
|
|
95
|
+
|
|
96
|
+
# ---------- start with processing lock ----------------------------------
|
|
97
|
+
@api_view(["POST"])
|
|
98
|
+
@permission_classes(PERMS)
|
|
99
|
+
def start_anonymization(request, file_id: int):
|
|
100
|
+
"""
|
|
101
|
+
Start anonymization with processing lock to prevent duplicates.
|
|
102
|
+
"""
|
|
103
|
+
# First check what type of file this is
|
|
104
|
+
info = AnonymizationService.get_status(file_id)
|
|
105
|
+
if not info:
|
|
106
|
+
return Response({"detail": "File not found"}, status=status.HTTP_404_NOT_FOUND)
|
|
107
|
+
|
|
108
|
+
file_type = info["mediaType"]
|
|
109
|
+
|
|
110
|
+
# Use processing lock context to prevent duplicate processing
|
|
111
|
+
with ProcessingLockContext(file_id, file_type) as lock:
|
|
112
|
+
if not lock.acquired:
|
|
113
|
+
return Response(
|
|
114
|
+
{
|
|
115
|
+
"detail": "File is already being processed by another request",
|
|
116
|
+
"file_id": file_id,
|
|
117
|
+
"file_type": file_type,
|
|
118
|
+
"processing_locked": True
|
|
119
|
+
},
|
|
120
|
+
status=status.HTTP_409_CONFLICT
|
|
121
|
+
)
|
|
122
|
+
|
|
123
|
+
# Proceed with starting anonymization
|
|
124
|
+
service = AnonymizationService()
|
|
125
|
+
kind = service.start(file_id)
|
|
126
|
+
if not kind:
|
|
127
|
+
return Response({"detail": "Failed to start anonymization"}, status=status.HTTP_500_INTERNAL_SERVER_ERROR)
|
|
128
|
+
|
|
129
|
+
return Response({
|
|
130
|
+
"detail": f"Anonymization started for {kind} file",
|
|
131
|
+
"file_id": file_id,
|
|
132
|
+
"file_type": kind,
|
|
133
|
+
"processing_locked": True
|
|
134
|
+
})
|
|
135
|
+
|
|
136
|
+
|
|
137
|
+
# ---------- current with coordination ------------------------------------
|
|
138
|
+
@api_view(['GET', 'POST', 'PUT'])
|
|
139
|
+
@permission_classes(DEBUG_PERMISSIONS)
|
|
140
|
+
def anonymization_current(request, file_id):
|
|
141
|
+
"""
|
|
142
|
+
Set current file for validation and return patient data
|
|
143
|
+
"""
|
|
144
|
+
# Try to find the file in VideoFile first
|
|
145
|
+
try:
|
|
146
|
+
video_file = VideoFile.objects.select_related('sensitive_meta').get(id=file_id)
|
|
147
|
+
serializer = VoPPatientDataSerializer(video_file, context={'request': request})
|
|
148
|
+
return Response(serializer.data)
|
|
149
|
+
except VideoFile.DoesNotExist:
|
|
150
|
+
pass
|
|
151
|
+
# Try to find the file in RawPdfFile
|
|
152
|
+
try:
|
|
153
|
+
pdf_file = RawPdfFile.objects.select_related('sensitive_meta').get(id=file_id)
|
|
154
|
+
serializer = VoPPatientDataSerializer(pdf_file, context={'request': request})
|
|
155
|
+
return Response(serializer.data)
|
|
156
|
+
|
|
157
|
+
except RawPdfFile.DoesNotExist:
|
|
158
|
+
pass
|
|
159
|
+
|
|
160
|
+
except (ValueError, TypeError, AttributeError) as e:
|
|
161
|
+
logger.error(f"Error in set_current_for_validation: {e}")
|
|
162
|
+
return JsonResponse({'status': 'error', 'message': str(e)}, status=500)
|
|
163
|
+
|
|
164
|
+
return JsonResponse({'status': 'error', 'message': 'File not found'}, status=404)
|
|
165
|
+
|
|
166
|
+
# ---------- polling coordinator info ------------------------------------
|
|
167
|
+
@api_view(['GET'])
|
|
168
|
+
@permission_classes(DEBUG_PERMISSIONS)
|
|
169
|
+
def polling_coordinator_info(request):
|
|
170
|
+
"""
|
|
171
|
+
GET /api/anonymization/polling-info/
|
|
172
|
+
Get information about polling coordinator status
|
|
173
|
+
"""
|
|
174
|
+
try:
|
|
175
|
+
info = PollingCoordinator.get_processing_locks_info()
|
|
176
|
+
return Response(info)
|
|
177
|
+
except Exception as e:
|
|
178
|
+
logger.error(f"Error getting polling coordinator info: {e}")
|
|
179
|
+
return Response(
|
|
180
|
+
{"error": "Failed to get coordinator info"},
|
|
181
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR
|
|
182
|
+
)
|
|
183
|
+
|
|
184
|
+
# ---------- emergency lock management -----------------------------------
|
|
185
|
+
@api_view(['DELETE'])
|
|
186
|
+
@permission_classes(DEBUG_PERMISSIONS)
|
|
187
|
+
def clear_processing_locks(request):
|
|
188
|
+
"""
|
|
189
|
+
DELETE /api/anonymization/clear-locks/
|
|
190
|
+
Emergency endpoint to clear all processing locks
|
|
191
|
+
"""
|
|
192
|
+
try:
|
|
193
|
+
file_type = request.query_params.get('type', None)
|
|
194
|
+
cleared_count = PollingCoordinator.clear_all_locks(file_type)
|
|
195
|
+
|
|
196
|
+
return Response({
|
|
197
|
+
"detail": "Processing locks cleared",
|
|
198
|
+
"cleared_count": cleared_count,
|
|
199
|
+
"file_type_filter": file_type
|
|
200
|
+
})
|
|
201
|
+
except Exception as e:
|
|
202
|
+
logger.error(f"Error clearing processing locks: {e}")
|
|
203
|
+
return Response(
|
|
204
|
+
{"error": "Failed to clear locks"},
|
|
205
|
+
status=status.HTTP_500_INTERNAL_SERVER_ERROR
|
|
206
|
+
)
|
|
207
|
+
|
|
208
|
+
@api_view(['GET'])
|
|
209
|
+
@permission_classes(DEBUG_PERMISSIONS)
|
|
210
|
+
def has_raw_video_file(request, file_id):
|
|
211
|
+
"""
|
|
212
|
+
GET /api/anonymization/{file_id}/has-raw/
|
|
213
|
+
Check if a raw video file exists for the given file ID
|
|
214
|
+
"""
|
|
215
|
+
exists = VideoFile.objects.filter(id=file_id, raw_file__isnull=False).exists()
|
|
216
|
+
return Response({"file_id": file_id, "has_raw_file": exists})
|