endoreg-db 0.8.6.4__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/admin.py +92 -0
  3. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  4. endoreg_db/api/views/finding_descriptions.py +0 -0
  5. endoreg_db/api_urls.py +4 -0
  6. endoreg_db/apps.py +18 -0
  7. endoreg_db/assets/dummy_model.ckpt +1 -0
  8. endoreg_db/codemods/readme.md +88 -0
  9. endoreg_db/codemods/rename_datetime_fields.py +92 -0
  10. endoreg_db/config/__init__.py +0 -0
  11. endoreg_db/config/env.py +101 -0
  12. endoreg_db/data/__init__.py +144 -0
  13. endoreg_db/data/ai_model/data.yaml +7 -0
  14. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  15. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  16. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  17. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  18. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  19. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  20. endoreg_db/data/ai_model_type/data.yaml +7 -0
  21. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  22. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  23. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  24. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  25. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  26. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  27. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  28. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  29. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  30. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  31. endoreg_db/data/case_template/rule_value/.init +0 -0
  32. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  33. endoreg_db/data/case_template/template/base.yaml +8 -0
  34. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  35. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  36. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  37. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  38. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  39. endoreg_db/data/center/data.yaml +91 -0
  40. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  41. endoreg_db/data/center_shift/ukw.yaml +9 -0
  42. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  43. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  44. endoreg_db/data/db_summary.csv +58 -0
  45. endoreg_db/data/db_summary.xlsx +0 -0
  46. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  47. endoreg_db/data/disease/hepatology.yaml +5 -0
  48. endoreg_db/data/disease/misc.yaml +5 -0
  49. endoreg_db/data/disease/renal.yaml +5 -0
  50. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  51. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  52. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  53. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  54. endoreg_db/data/distribution/date/patient.yaml +7 -0
  55. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  56. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  57. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  58. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  59. endoreg_db/data/endoscope/data.yaml +93 -0
  60. endoreg_db/data/endoscope_type/data.yaml +11 -0
  61. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  62. endoreg_db/data/event/cardiology.yaml +15 -0
  63. endoreg_db/data/event/neurology.yaml +14 -0
  64. endoreg_db/data/event/surgery.yaml +13 -0
  65. endoreg_db/data/event/thrombembolism.yaml +20 -0
  66. endoreg_db/data/examination/examinations/data.yaml +72 -0
  67. endoreg_db/data/examination/time/data.yaml +48 -0
  68. endoreg_db/data/examination/time-type/data.yaml +8 -0
  69. endoreg_db/data/examination/type/data.yaml +17 -0
  70. endoreg_db/data/examination_indication/endoscopy.yaml +424 -0
  71. endoreg_db/data/examination_indication_classification/endoscopy.yaml +160 -0
  72. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
  73. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  74. endoreg_db/data/finding/anatomy_colon.yaml +128 -0
  75. endoreg_db/data/finding/colonoscopy.yaml +40 -0
  76. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
  77. endoreg_db/data/finding/complication.yaml +16 -0
  78. endoreg_db/data/finding/data.yaml +105 -0
  79. endoreg_db/data/finding/examination_setting.yaml +16 -0
  80. endoreg_db/data/finding/medication_related.yaml +18 -0
  81. endoreg_db/data/finding/outcome.yaml +12 -0
  82. endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
  83. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
  84. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
  85. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
  86. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
  87. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
  88. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
  89. endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
  90. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
  91. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
  92. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
  93. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
  94. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
  95. endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
  96. endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
  97. endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
  98. endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
  99. endoreg_db/data/finding_classification/medication_related.yaml +23 -0
  100. endoreg_db/data/finding_classification/visualized.yaml +33 -0
  101. endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
  102. endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
  103. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
  104. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
  105. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
  106. endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +17 -0
  107. endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +57 -0
  108. endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
  109. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
  110. endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
  111. endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +229 -0
  112. endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
  114. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
  115. endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
  116. endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
  117. endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
  118. endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
  119. endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
  120. endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
  121. endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
  122. endoreg_db/data/finding_intervention/endoscopy.yaml +43 -0
  123. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
  124. endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
  125. endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
  126. endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
  127. endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
  128. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  129. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
  130. endoreg_db/data/finding_type/data.yaml +43 -0
  131. endoreg_db/data/gender/data.yaml +42 -0
  132. endoreg_db/data/information_source/annotation.yaml +6 -0
  133. endoreg_db/data/information_source/data.yaml +30 -0
  134. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  135. endoreg_db/data/information_source/medication.yaml +6 -0
  136. endoreg_db/data/information_source/prediction.yaml +7 -0
  137. endoreg_db/data/information_source_type/data.yaml +8 -0
  138. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  139. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  140. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  141. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  142. endoreg_db/data/lab_value/hematology.yaml +184 -0
  143. endoreg_db/data/lab_value/hormones.yaml +59 -0
  144. endoreg_db/data/lab_value/lipids.yaml +53 -0
  145. endoreg_db/data/lab_value/misc.yaml +76 -0
  146. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  147. endoreg_db/data/log_type/data.yaml +57 -0
  148. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  149. endoreg_db/data/lx_client_type/base.yaml +30 -0
  150. endoreg_db/data/lx_permission/base.yaml +24 -0
  151. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  152. endoreg_db/data/material/material.yaml +91 -0
  153. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  154. endoreg_db/data/medication/tah.yaml +70 -0
  155. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  156. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  157. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  158. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  159. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  160. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  161. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  162. endoreg_db/data/names_first/first_names.yaml +54 -0
  163. endoreg_db/data/names_last/last_names.yaml +51 -0
  164. endoreg_db/data/network_device/data.yaml +59 -0
  165. endoreg_db/data/network_device_type/data.yaml +12 -0
  166. endoreg_db/data/organ/data.yaml +29 -0
  167. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  168. endoreg_db/data/pdf_type/data.yaml +46 -0
  169. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  170. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  171. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  172. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  173. endoreg_db/data/profession/data.yaml +70 -0
  174. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  175. endoreg_db/data/qualification/m2.yaml +39 -0
  176. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  177. endoreg_db/data/qualification/sonography.yaml +36 -0
  178. endoreg_db/data/qualification_type/base.yaml +29 -0
  179. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  180. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  181. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  182. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  183. endoreg_db/data/requirement/age.yaml +26 -0
  184. endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
  185. endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
  186. endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
  187. endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
  188. endoreg_db/data/requirement/disease_misc.yaml +12 -0
  189. endoreg_db/data/requirement/disease_renal.yaml +96 -0
  190. endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
  191. endoreg_db/data/requirement/event_cardiology.yaml +251 -0
  192. endoreg_db/data/requirement/event_requirements.yaml +145 -0
  193. endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
  194. endoreg_db/data/requirement/gender.yaml +25 -0
  195. endoreg_db/data/requirement/lab_value.yaml +441 -0
  196. endoreg_db/data/requirement/medication.yaml +93 -0
  197. endoreg_db/data/requirement_operator/age.yaml +13 -0
  198. endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
  199. endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
  200. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
  201. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  202. endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
  203. endoreg_db/data/requirement_set_type/data.yaml +20 -0
  204. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  205. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  206. endoreg_db/data/risk/bleeding.yaml +26 -0
  207. endoreg_db/data/risk/thrombosis.yaml +37 -0
  208. endoreg_db/data/risk_type/data.yaml +27 -0
  209. endoreg_db/data/setup_config.yaml +38 -0
  210. endoreg_db/data/shift/endoscopy.yaml +21 -0
  211. endoreg_db/data/shift/m2.yaml +0 -0
  212. endoreg_db/data/shift_type/base.yaml +35 -0
  213. endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
  214. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  215. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  216. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  217. endoreg_db/data/unit/concentration.yaml +115 -0
  218. endoreg_db/data/unit/data.yaml +17 -0
  219. endoreg_db/data/unit/length.yaml +31 -0
  220. endoreg_db/data/unit/misc.yaml +20 -0
  221. endoreg_db/data/unit/rate.yaml +6 -0
  222. endoreg_db/data/unit/time.yaml +48 -0
  223. endoreg_db/data/unit/volume.yaml +35 -0
  224. endoreg_db/data/unit/weight.yaml +38 -0
  225. endoreg_db/data/waste/data.yaml +12 -0
  226. endoreg_db/exceptions.py +19 -0
  227. endoreg_db/factories/__init__.py +0 -0
  228. endoreg_db/forms/__init__.py +5 -0
  229. endoreg_db/forms/examination_form.py +11 -0
  230. endoreg_db/forms/patient_finding_intervention_form.py +18 -0
  231. endoreg_db/forms/patient_form.py +27 -0
  232. endoreg_db/forms/questionnaires/__init__.py +1 -0
  233. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  234. endoreg_db/forms/settings/__init__.py +8 -0
  235. endoreg_db/forms/unit.py +6 -0
  236. endoreg_db/helpers/__init__.py +0 -0
  237. endoreg_db/helpers/count_db.py +45 -0
  238. endoreg_db/helpers/data_loader.py +208 -0
  239. endoreg_db/helpers/default_objects.py +378 -0
  240. endoreg_db/helpers/download_segmentation_model.py +31 -0
  241. endoreg_db/helpers/interact.py +6 -0
  242. endoreg_db/helpers/test_video_helper.py +119 -0
  243. endoreg_db/logger_conf.py +140 -0
  244. endoreg_db/management/__init__.py +1 -0
  245. endoreg_db/management/commands/__init__.py +1 -0
  246. endoreg_db/management/commands/anonymize_video.py +0 -0
  247. endoreg_db/management/commands/check_auth.py +125 -0
  248. endoreg_db/management/commands/create_model_meta_from_huggingface.py +115 -0
  249. endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
  250. endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
  251. endoreg_db/management/commands/fix_video_paths.py +165 -0
  252. endoreg_db/management/commands/import_fallback_video.py +203 -0
  253. endoreg_db/management/commands/import_report.py +298 -0
  254. endoreg_db/management/commands/import_video.py +423 -0
  255. endoreg_db/management/commands/import_video_with_classification.py +367 -0
  256. endoreg_db/management/commands/init_default_ai_model.py +112 -0
  257. endoreg_db/management/commands/load_ai_model_data.py +77 -0
  258. endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
  259. endoreg_db/management/commands/load_base_db_data.py +192 -0
  260. endoreg_db/management/commands/load_center_data.py +68 -0
  261. endoreg_db/management/commands/load_contraindication_data.py +41 -0
  262. endoreg_db/management/commands/load_disease_classification_choices_data.py +41 -0
  263. endoreg_db/management/commands/load_disease_classification_data.py +41 -0
  264. endoreg_db/management/commands/load_disease_data.py +62 -0
  265. endoreg_db/management/commands/load_distribution_data.py +66 -0
  266. endoreg_db/management/commands/load_endoscope_data.py +68 -0
  267. endoreg_db/management/commands/load_event_data.py +41 -0
  268. endoreg_db/management/commands/load_examination_data.py +75 -0
  269. endoreg_db/management/commands/load_examination_indication_data.py +86 -0
  270. endoreg_db/management/commands/load_finding_data.py +128 -0
  271. endoreg_db/management/commands/load_gender_data.py +44 -0
  272. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -0
  273. endoreg_db/management/commands/load_information_source.py +51 -0
  274. endoreg_db/management/commands/load_lab_value_data.py +50 -0
  275. endoreg_db/management/commands/load_medication_data.py +103 -0
  276. endoreg_db/management/commands/load_name_data.py +37 -0
  277. endoreg_db/management/commands/load_organ_data.py +43 -0
  278. endoreg_db/management/commands/load_pdf_type_data.py +61 -0
  279. endoreg_db/management/commands/load_profession_data.py +44 -0
  280. endoreg_db/management/commands/load_qualification_data.py +59 -0
  281. endoreg_db/management/commands/load_report_reader_flag_data.py +46 -0
  282. endoreg_db/management/commands/load_requirement_data.py +180 -0
  283. endoreg_db/management/commands/load_risk_data.py +56 -0
  284. endoreg_db/management/commands/load_shift_data.py +60 -0
  285. endoreg_db/management/commands/load_tag_data.py +57 -0
  286. endoreg_db/management/commands/load_unit_data.py +46 -0
  287. endoreg_db/management/commands/load_user_groups.py +28 -0
  288. endoreg_db/management/commands/register_ai_model.py +64 -0
  289. endoreg_db/management/commands/reset_celery_schedule.py +9 -0
  290. endoreg_db/management/commands/setup_endoreg_db.py +381 -0
  291. endoreg_db/management/commands/start_filewatcher.py +106 -0
  292. endoreg_db/management/commands/storage_management.py +548 -0
  293. endoreg_db/management/commands/summarize_db_content.py +189 -0
  294. endoreg_db/management/commands/validate_video.py +204 -0
  295. endoreg_db/management/commands/validate_video_files.py +161 -0
  296. endoreg_db/management/commands/video_validation.py +22 -0
  297. endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
  298. endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
  299. endoreg_db/mermaid/binary_classification_annotation.md +50 -0
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  607. endoreg_db/tasks/video_ingest.py +157 -0
  608. endoreg_db/tasks/video_processing_tasks.py +327 -0
  609. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  610. endoreg_db/templates/admin/start_examination.html +12 -0
  611. endoreg_db/templates/timeline.html +176 -0
  612. endoreg_db/urls/__init__.py +83 -0
  613. endoreg_db/urls/anonymization.py +32 -0
  614. endoreg_db/urls/auth.py +16 -0
  615. endoreg_db/urls/classification.py +39 -0
  616. endoreg_db/urls/examination.py +54 -0
  617. endoreg_db/urls/files.py +6 -0
  618. endoreg_db/urls/label_video_segment_validate.py +33 -0
  619. endoreg_db/urls/label_video_segments.py +46 -0
  620. endoreg_db/urls/media.py +227 -0
  621. endoreg_db/urls/patient.py +19 -0
  622. endoreg_db/urls/report.py +48 -0
  623. endoreg_db/urls/requirements.py +13 -0
  624. endoreg_db/urls/sensitive_meta.py +0 -0
  625. endoreg_db/urls/stats.py +46 -0
  626. endoreg_db/urls/upload.py +20 -0
  627. endoreg_db/urls/video.py +61 -0
  628. endoreg_db/urls.py +9 -0
  629. endoreg_db/utils/__init__.py +88 -0
  630. endoreg_db/utils/ai/__init__.py +9 -0
  631. endoreg_db/utils/ai/get.py +5 -0
  632. endoreg_db/utils/ai/inference_dataset.py +52 -0
  633. endoreg_db/utils/ai/multilabel_classification_net.py +159 -0
  634. endoreg_db/utils/ai/postprocess.py +63 -0
  635. endoreg_db/utils/ai/predict.py +291 -0
  636. endoreg_db/utils/ai/preprocess.py +68 -0
  637. endoreg_db/utils/calc_duration_seconds.py +24 -0
  638. endoreg_db/utils/case_generator/__init__.py +0 -0
  639. endoreg_db/utils/case_generator/case_generator.py +159 -0
  640. endoreg_db/utils/case_generator/lab_sample_factory.py +33 -0
  641. endoreg_db/utils/case_generator/utils.py +30 -0
  642. endoreg_db/utils/check_video_files.py +148 -0
  643. endoreg_db/utils/cropping.py +29 -0
  644. endoreg_db/utils/dataloader.py +175 -0
  645. endoreg_db/utils/dates.py +60 -0
  646. endoreg_db/utils/env.py +33 -0
  647. endoreg_db/utils/extract_specific_frames.py +72 -0
  648. endoreg_db/utils/file_operations.py +58 -0
  649. endoreg_db/utils/fix_video_path_direct.py +141 -0
  650. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  651. endoreg_db/utils/hashs.py +153 -0
  652. endoreg_db/utils/links/__init__.py +0 -0
  653. endoreg_db/utils/links/requirement_link.py +193 -0
  654. endoreg_db/utils/mime_types.py +0 -0
  655. endoreg_db/utils/names.py +76 -0
  656. endoreg_db/utils/ocr.py +190 -0
  657. endoreg_db/utils/parse_and_generate_yaml.py +46 -0
  658. endoreg_db/utils/paths.py +95 -0
  659. endoreg_db/utils/permissions.py +143 -0
  660. endoreg_db/utils/pipelines/Readme.md +235 -0
  661. endoreg_db/utils/pipelines/__init__.py +0 -0
  662. endoreg_db/utils/pipelines/process_video_dir.py +120 -0
  663. endoreg_db/utils/product/__init__.py +0 -0
  664. endoreg_db/utils/product/sum_emissions.py +20 -0
  665. endoreg_db/utils/product/sum_weights.py +18 -0
  666. endoreg_db/utils/pydantic_models/__init__.py +6 -0
  667. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  668. endoreg_db/utils/requirement_helpers.py +0 -0
  669. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  670. endoreg_db/utils/requirement_operator_logic/lab_value_operators.py +578 -0
  671. endoreg_db/utils/requirement_operator_logic/model_evaluators.py +368 -0
  672. endoreg_db/utils/setup_config.py +177 -0
  673. endoreg_db/utils/translation.py +27 -0
  674. endoreg_db/utils/uuid.py +4 -0
  675. endoreg_db/utils/validate_endo_roi.py +19 -0
  676. endoreg_db/utils/validate_subcategory_dict.py +91 -0
  677. endoreg_db/utils/validate_video_detailed.py +357 -0
  678. endoreg_db/utils/video/__init__.py +26 -0
  679. endoreg_db/utils/video/extract_frames.py +88 -0
  680. endoreg_db/utils/video/ffmpeg_wrapper.py +835 -0
  681. endoreg_db/utils/video/names.py +42 -0
  682. endoreg_db/utils/video/streaming_processor.py +312 -0
  683. endoreg_db/utils/video/video_splitter.py +94 -0
  684. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +238 -0
  685. endoreg_db/views/__init__.py +274 -0
  686. endoreg_db/views/anonymization/__init__.py +27 -0
  687. endoreg_db/views/anonymization/media_management.py +454 -0
  688. endoreg_db/views/anonymization/overview.py +216 -0
  689. endoreg_db/views/anonymization/validate.py +107 -0
  690. endoreg_db/views/auth/__init__.py +13 -0
  691. endoreg_db/views/auth/keycloak.py +113 -0
  692. endoreg_db/views/examination/__init__.py +33 -0
  693. endoreg_db/views/examination/examination.py +37 -0
  694. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  695. endoreg_db/views/examination/get_finding_classification_choices.py +59 -0
  696. endoreg_db/views/examination/get_finding_classifications.py +36 -0
  697. endoreg_db/views/examination/get_findings.py +41 -0
  698. endoreg_db/views/examination/get_instruments.py +18 -0
  699. endoreg_db/views/examination/get_interventions.py +14 -0
  700. endoreg_db/views/finding/__init__.py +9 -0
  701. endoreg_db/views/finding/finding.py +112 -0
  702. endoreg_db/views/finding/get_classifications.py +14 -0
  703. endoreg_db/views/finding/get_interventions.py +17 -0
  704. endoreg_db/views/finding_classification/__init__.py +13 -0
  705. endoreg_db/views/finding_classification/base.py +0 -0
  706. endoreg_db/views/finding_classification/finding_classification.py +42 -0
  707. endoreg_db/views/finding_classification/get_classification_choices.py +55 -0
  708. endoreg_db/views/label/__init__.py +5 -0
  709. endoreg_db/views/label/label.py +15 -0
  710. endoreg_db/views/label_video_segment/__init__.py +16 -0
  711. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +44 -0
  712. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +50 -0
  713. endoreg_db/views/label_video_segment/label_video_segment.py +77 -0
  714. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +174 -0
  715. endoreg_db/views/label_video_segment/label_video_segment_detail.py +73 -0
  716. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +46 -0
  717. endoreg_db/views/label_video_segment/validate.py +226 -0
  718. endoreg_db/views/media/__init__.py +45 -0
  719. endoreg_db/views/media/pdf_media.py +388 -0
  720. endoreg_db/views/media/segments.py +71 -0
  721. endoreg_db/views/media/sensitive_metadata.py +314 -0
  722. endoreg_db/views/media/video_media.py +272 -0
  723. endoreg_db/views/media/video_segments.py +524 -0
  724. endoreg_db/views/meta/__init__.py +15 -0
  725. endoreg_db/views/meta/available_files_list.py +146 -0
  726. endoreg_db/views/meta/report_meta.py +53 -0
  727. endoreg_db/views/meta/sensitive_meta_detail.py +148 -0
  728. endoreg_db/views/meta/sensitive_meta_list.py +104 -0
  729. endoreg_db/views/meta/sensitive_meta_verification.py +71 -0
  730. endoreg_db/views/misc/__init__.py +63 -0
  731. endoreg_db/views/misc/center.py +13 -0
  732. endoreg_db/views/misc/csrf.py +7 -0
  733. endoreg_db/views/misc/gender.py +14 -0
  734. endoreg_db/views/misc/secure_file_serving_view.py +80 -0
  735. endoreg_db/views/misc/secure_file_url_view.py +84 -0
  736. endoreg_db/views/misc/secure_url_validate.py +79 -0
  737. endoreg_db/views/misc/stats.py +220 -0
  738. endoreg_db/views/misc/translation.py +182 -0
  739. endoreg_db/views/misc/upload_views.py +240 -0
  740. endoreg_db/views/patient/__init__.py +5 -0
  741. endoreg_db/views/patient/patient.py +210 -0
  742. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +164 -0
  743. endoreg_db/views/patient_examination/__init__.py +11 -0
  744. endoreg_db/views/patient_examination/patient_examination.py +140 -0
  745. endoreg_db/views/patient_examination/patient_examination_create.py +63 -0
  746. endoreg_db/views/patient_examination/patient_examination_detail.py +66 -0
  747. endoreg_db/views/patient_examination/patient_examination_list.py +68 -0
  748. endoreg_db/views/patient_examination/video.py +194 -0
  749. endoreg_db/views/patient_finding/__init__.py +7 -0
  750. endoreg_db/views/patient_finding/base.py +0 -0
  751. endoreg_db/views/patient_finding/patient_finding.py +64 -0
  752. endoreg_db/views/patient_finding/patient_finding_optimized.py +259 -0
  753. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  754. endoreg_db/views/patient_finding_classification/pfc_create.py +67 -0
  755. endoreg_db/views/patient_finding_location/__init__.py +5 -0
  756. endoreg_db/views/patient_finding_location/pfl_create.py +70 -0
  757. endoreg_db/views/patient_finding_morphology/__init__.py +5 -0
  758. endoreg_db/views/patient_finding_morphology/pfm_create.py +70 -0
  759. endoreg_db/views/pdf/__init__.py +8 -0
  760. endoreg_db/views/pdf/pdf_stream.py +186 -0
  761. endoreg_db/views/pdf/reimport.py +177 -0
  762. endoreg_db/views/report/__init__.py +9 -0
  763. endoreg_db/views/report/report_list.py +112 -0
  764. endoreg_db/views/report/report_with_secure_url.py +28 -0
  765. endoreg_db/views/report/start_examination.py +7 -0
  766. endoreg_db/views/requirement/__init__.py +10 -0
  767. endoreg_db/views/requirement/evaluate.py +279 -0
  768. endoreg_db/views/requirement/lookup.py +367 -0
  769. endoreg_db/views/requirement/lookup_store.py +252 -0
  770. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  771. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  772. endoreg_db/views/stats/__init__.py +13 -0
  773. endoreg_db/views/stats/stats_views.py +229 -0
  774. endoreg_db/views/video/__init__.py +59 -0
  775. endoreg_db/views/video/correction.py +530 -0
  776. endoreg_db/views/video/reimport.py +195 -0
  777. endoreg_db/views/video/segmentation.py +274 -0
  778. endoreg_db/views/video/task_status.py +49 -0
  779. endoreg_db/views/video/timeline.py +46 -0
  780. endoreg_db/views/video/video_analyze.py +52 -0
  781. endoreg_db/views/video/video_apply_mask.py +48 -0
  782. endoreg_db/views/video/video_correction.py +21 -0
  783. endoreg_db/views/video/video_download_processed.py +58 -0
  784. endoreg_db/views/video/video_examination_viewset.py +242 -0
  785. endoreg_db/views/video/video_meta.py +29 -0
  786. endoreg_db/views/video/video_processing_history.py +24 -0
  787. endoreg_db/views/video/video_remove_frames.py +48 -0
  788. endoreg_db/views/video/video_stream.py +306 -0
  789. endoreg_db/views.py +0 -0
  790. endoreg_db-0.8.6.4.dist-info/METADATA +383 -0
  791. endoreg_db-0.8.6.4.dist-info/RECORD +793 -0
  792. endoreg_db-0.8.6.4.dist-info/WHEEL +4 -0
  793. endoreg_db-0.8.6.4.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,134 @@
1
+ import logging
2
+ from typing import TYPE_CHECKING, Optional
3
+ # --- Fix Imports ---
4
+ from ....metadata import SensitiveMeta
5
+ from ....metadata.sensitive_meta_logic import update_or_create_sensitive_meta_from_dict
6
+ # --- End Fix ---
7
+ from django.db import transaction
8
+
9
+ if TYPE_CHECKING:
10
+ from ..video_file import VideoFile
11
+ # SensitiveMeta is already imported above
12
+
13
+ logger = logging.getLogger(__name__)
14
+
15
+
16
+ def _update_text_metadata(
17
+ video: "VideoFile",
18
+ extracted_data_dict: Optional[dict] = None,
19
+ ocr_frame_fraction: float = 0.01,
20
+ cap: int = 10,
21
+ overwrite: bool = False,
22
+ ) -> Optional["SensitiveMeta"]:
23
+ """
24
+ Extracts text from a fraction of video frames, updates or creates SensitiveMeta,
25
+ and potentially updates the VideoFile's date field. Requires frames to be extracted.
26
+ Raises ValueError if pre-conditions not met, RuntimeError on processing failure.
27
+
28
+ State Transitions:
29
+ - Pre-condition: Requires state.frames_extracted=True.
30
+ - Post-condition: Sets state.text_meta_extracted=True (even if no text found).
31
+ """
32
+ logger.debug(f"Updating text metadata for video {video.uuid}")
33
+ state = video.get_or_create_state()
34
+
35
+ # --- Pre-condition Checks ---
36
+ if not state.frames_extracted:
37
+ # Attempt to extract frames automatically if they're not available
38
+ logger.warning(f"Frames not extracted for video {video.uuid}. Attempting automatic frame extraction...")
39
+ try:
40
+ success = video.extract_frames(overwrite=False)
41
+ if success:
42
+ # Refresh state after frame extraction
43
+ state.refresh_from_db()
44
+ if state.frames_extracted:
45
+ logger.info(f"Successfully extracted frames for video {video.uuid}")
46
+ else:
47
+ # Force update the state if extraction was successful but state wasn't updated
48
+ state.frames_extracted = True
49
+ state.save(update_fields=['frames_extracted'])
50
+ logger.info(f"Corrected frames_extracted state for video {video.uuid}")
51
+ else:
52
+ raise ValueError(f"Cannot update text metadata for video {video.uuid}: Frame extraction failed.")
53
+ except Exception as e:
54
+ logger.error(f"Failed to extract frames for video {video.uuid}: {e}")
55
+ raise ValueError(f"Cannot update text metadata for video {video.uuid}: Frames not extracted and automatic extraction failed: {e}")
56
+
57
+ if state.text_meta_extracted and not overwrite:
58
+ logger.info("Text already extracted for video %s and overwrite=False. Skipping.", video.uuid) # Changed to info
59
+ return video.sensitive_meta # Return existing meta if available
60
+ # --- End Pre-condition Checks ---
61
+
62
+ # Extract text using the AI helper function
63
+ # _extract_text_from_video_frames raises ValueError on pre-condition failure
64
+ try:
65
+ if not extracted_data_dict:
66
+ extracted_data_dict = video.extract_text_from_frames(
67
+ frame_fraction=ocr_frame_fraction, cap=cap
68
+ )
69
+ except Exception as text_extract_e:
70
+ logger.error("Failed during text extraction step for video %s: %s", video.uuid, text_extract_e, exc_info=True)
71
+ raise RuntimeError(f"Text extraction failed for video {video.uuid}") from text_extract_e
72
+
73
+ # --- Atomic Update Block ---
74
+ try:
75
+ with transaction.atomic():
76
+ # Refresh state in case it changed
77
+ state.refresh_from_db()
78
+ sensitive_meta_instance = video.sensitive_meta # Get current instance
79
+
80
+ if not extracted_data_dict:
81
+ logger.warning("No text extracted for video %s; skipping SensitiveMeta update.", video.uuid)
82
+ # Mark state as retrieved even if no data found, to avoid re-running unless overwrite=True
83
+ if not state.text_meta_extracted:
84
+ state.text_meta_extracted = True
85
+ state.save(update_fields=['text_meta_extracted'])
86
+ return sensitive_meta_instance # Return existing meta if available
87
+
88
+ # Add center info if not already present in extracted data
89
+ if 'center_name' not in extracted_data_dict and video.center:
90
+ extracted_data_dict['center_name'] = video.center.name
91
+ logger.debug("Data for SensitiveMeta update for video %s: %s", video.uuid, extracted_data_dict)
92
+
93
+ # Pass the Class, the data dict, and the current instance (or None)
94
+ # This function might raise exceptions if data is invalid
95
+ sensitive_meta, created = update_or_create_sensitive_meta_from_dict(
96
+ SensitiveMeta, # Pass the class
97
+ extracted_data_dict,
98
+ instance=sensitive_meta_instance # Pass current instance via keyword
99
+ )
100
+
101
+ # Update VideoFile fields if necessary
102
+ update_fields_video = []
103
+ if created or sensitive_meta != sensitive_meta_instance: # Check if relation needs update
104
+ video.sensitive_meta = sensitive_meta
105
+ update_fields_video.append('sensitive_meta')
106
+
107
+ if not video.date and sensitive_meta and extracted_data_dict.get('date'):
108
+ extracted_date = extracted_data_dict.get('date')
109
+ if extracted_date: # Ensure date is not None or empty
110
+ video.date = extracted_date
111
+ update_fields_video.append("date")
112
+
113
+ # Save VideoFile if fields changed
114
+ if update_fields_video:
115
+ video.save(update_fields=update_fields_video)
116
+
117
+ # Update state
118
+ if not state.text_meta_extracted:
119
+ state.text_meta_extracted = True
120
+ state.save(update_fields=['text_meta_extracted'])
121
+
122
+ # Mark sensitive meta as processed when updated via text metadata
123
+ if sensitive_meta:
124
+ state.mark_sensitive_meta_processed(save=True)
125
+ logger.info(f"Marked sensitive_meta_processed=True for video {video.uuid} after text metadata update")
126
+
127
+ logger.info("Successfully updated/created SensitiveMeta and state for video %s.", video.uuid) # Changed to info
128
+ return sensitive_meta
129
+
130
+ except Exception as e:
131
+ logger.error("Failed to update/create SensitiveMeta or state for video %s: %s", video.uuid, e, exc_info=True)
132
+ # Re-raise exception for the pipeline to catch
133
+ raise RuntimeError(f"Failed to update/create SensitiveMeta or state for video {video.uuid}") from e
134
+ # --- End Atomic Update Block ---
@@ -0,0 +1,70 @@
1
+ import logging
2
+ from typing import TYPE_CHECKING
3
+
4
+ if TYPE_CHECKING:
5
+ from ..video_file import VideoFile
6
+
7
+ logger = logging.getLogger(__name__)
8
+
9
+ def _update_video_meta(video: "VideoFile", save_instance: bool = True):
10
+ """
11
+ Updates or creates the technical VideoMeta from the raw video file.
12
+ Raises FileNotFoundError or ValueError on pre-condition failure, RuntimeError on processing failure.
13
+ """
14
+ from ....metadata import VideoMeta # Local import
15
+
16
+ logger.debug("Updating technical VideoMeta for video %s (from raw file).", video.uuid)
17
+
18
+ if not video.has_raw:
19
+ # DEFENSIVE: Log warning and skip instead of crashing
20
+ logger.warning(f"Raw video file path not available for {video.uuid}. Skipping VideoMeta update - this may indicate the video was processed and raw file moved.")
21
+ return # Graceful skip instead of FileNotFoundError
22
+
23
+ raw_video_path = video.get_raw_file_path() # Use helper
24
+ if not raw_video_path or not raw_video_path.exists():
25
+ # DEFENSIVE: Log warning and skip instead of crashing production pipeline
26
+ logger.warning(f"Raw video file path {raw_video_path} does not exist for video {video.uuid}. Skipping VideoMeta update - this typically happens after video processing when raw files are moved to processed location.")
27
+ return # Graceful skip instead of FileNotFoundError that crashes production
28
+
29
+ try:
30
+ vm = video.video_meta
31
+ if vm:
32
+ logger.info("Updating existing VideoMeta (PK: %s) for video %s.", vm.pk, video.uuid)
33
+ vm.update_meta(raw_video_path) # Assuming this method exists and raises on error
34
+ vm.save()
35
+ else:
36
+ if not video.center or not video.processor:
37
+ # Raise exception
38
+ raise ValueError(f"Cannot create VideoMeta for {video.uuid}: Center or Processor is missing.")
39
+
40
+ logger.info("Creating new VideoMeta for video %s.", video.uuid)
41
+ # Assuming create_from_file exists and raises on error
42
+ video.video_meta = VideoMeta.create_from_file(
43
+ video_path=raw_video_path,
44
+ center=video.center,
45
+ processor=video.processor,
46
+ save_instance=True # Let create_from_file handle saving
47
+ )
48
+ logger.info("Created and linked VideoMeta (PK: %s) for video %s.", video.video_meta.pk, video.uuid)
49
+
50
+ # Save the VideoFile instance itself if requested and if video_meta was linked/updated
51
+ if save_instance:
52
+ update_fields = ["video_meta"]
53
+ # Check if derived fields also need updating
54
+ if video.video_meta:
55
+ meta_fields = ["fps", "duration", "frame_count", "width", "height"]
56
+ for field in meta_fields:
57
+ # Check if field is None on video but has value on meta
58
+ if getattr(video, field) is None and getattr(video.video_meta, field, None) is not None:
59
+ # No need to set attribute here, save method handles it
60
+ update_fields.append(field)
61
+ # Ensure update_fields has unique values before saving
62
+ unique_update_fields = list(set(update_fields))
63
+ if unique_update_fields:
64
+ video.save(update_fields=unique_update_fields)
65
+ logger.info("Saved video %s after VideoMeta update (Fields: %s).", video.uuid, unique_update_fields)
66
+
67
+ except Exception as e:
68
+ logger.error("Failed to update/create VideoMeta for video %s: %s", video.uuid, e, exc_info=True)
69
+ # Re-raise exception
70
+ raise RuntimeError(f"Failed to update/create VideoMeta for video {video.uuid}") from e
@@ -0,0 +1,209 @@
1
+ import logging
2
+ from typing import TYPE_CHECKING, List, Dict, Tuple, Set
3
+ from icecream import ic
4
+ from pathlib import Path
5
+ from django.db.models import Q # Import Q for complex queries
6
+
7
+ if TYPE_CHECKING:
8
+ from .video_file import VideoFile
9
+ from ...label import LabelVideoSegment
10
+ from ...metadata import VideoPredictionMeta
11
+ from ..frame import Frame
12
+ from django.db.models import QuerySet
13
+
14
+ logger = logging.getLogger(__name__)
15
+
16
+ def _convert_sequences_to_db_segments(
17
+ video: "VideoFile",
18
+ sequences: Dict[str, List[Tuple[int, int]]],
19
+ video_prediction_meta: "VideoPredictionMeta",
20
+ ):
21
+ """
22
+ Converts predicted sequences into LabelVideoSegment database objects
23
+ and ensures their corresponding state objects are created.
24
+ """
25
+ from ...label import Label, LabelVideoSegment # Local import for models
26
+
27
+ logger.info("Converting sequences to LabelVideoSegments for video %s, prediction meta %s", video.uuid, video_prediction_meta.pk)
28
+ created_count = 0
29
+ skipped_count = 0
30
+ error_count = 0
31
+ state_created_count = 0
32
+ state_error_count = 0
33
+
34
+ processed_labels = set()
35
+
36
+ for label_name, sequence_list in sequences.items():
37
+ if not sequence_list:
38
+ continue
39
+
40
+ processed_labels.add(label_name)
41
+
42
+ try:
43
+ label = Label.objects.get(name=label_name) # require pre-existing label
44
+ except Exception as e:
45
+ logger.error("Could not get or create Label '%s': %s", label_name, e, exc_info=True)
46
+ error_count += len(sequence_list)
47
+ continue
48
+
49
+ segments_to_create = []
50
+ for start_frame, end_frame in sequence_list:
51
+ if start_frame > end_frame or start_frame < 0:
52
+ logger.warning("Skipping invalid sequence for label '%s': start=%d, end=%d", label_name, start_frame, end_frame)
53
+ skipped_count += 1
54
+ continue
55
+
56
+ segments_to_create.append(
57
+ LabelVideoSegment(
58
+ video_file=video,
59
+ label=label,
60
+ start_frame_number=start_frame,
61
+ end_frame_number=end_frame,
62
+ prediction_meta=video_prediction_meta,
63
+ )
64
+ )
65
+
66
+ if segments_to_create:
67
+ try:
68
+ LabelVideoSegment.objects.bulk_create(segments_to_create, ignore_conflicts=True)
69
+ created_count += len(segments_to_create)
70
+ logger.debug("Bulk created %d segments for label '%s'", len(segments_to_create), label_name)
71
+ except Exception as e:
72
+ logger.error("Error bulk creating segments for label '%s': %s", label_name, e, exc_info=True)
73
+ error_count += len(segments_to_create)
74
+
75
+ newly_created_segments = LabelVideoSegment.objects.filter(
76
+ video_file=video,
77
+ prediction_meta=video_prediction_meta,
78
+ label__name__in=processed_labels
79
+ )
80
+
81
+ logger.info("Attempting to create state objects for %d potentially new segments (Video: %s, PredictionMeta: %s)",
82
+ newly_created_segments.count(), video.uuid, video_prediction_meta.pk)
83
+
84
+ for segment in newly_created_segments:
85
+ try:
86
+ _state, created = segment.get_or_create_state()
87
+ if created:
88
+ state_created_count += 1
89
+ except Exception as e:
90
+ logger.error("Failed to get or create state for segment %s (Video: %s): %s", segment.pk, video.uuid, e, exc_info=True)
91
+ state_error_count += 1
92
+
93
+ logger.info(
94
+ "LabelVideoSegment conversion finished for video %s. Segments Created: %d, Skipped: %d, Errors: %d. States Created: %d, State Errors: %d",
95
+ video.uuid, created_count, skipped_count, error_count, state_created_count, state_error_count
96
+ )
97
+
98
+
99
+ def _sequences_to_label_video_segments(
100
+ video: "VideoFile",
101
+ video_prediction_meta: "VideoPredictionMeta",
102
+ ):
103
+ """Converts stored sequences on the video object to LabelVideoSegments."""
104
+ if not video.sequences:
105
+ return
106
+
107
+ if not video_prediction_meta:
108
+ return
109
+
110
+ _convert_sequences_to_db_segments(
111
+ video=video,
112
+ sequences=video.sequences,
113
+ video_prediction_meta=video_prediction_meta,
114
+ )
115
+
116
+
117
+ def _get_outside_segments(video: "VideoFile", outside_label_name: str = "outside") -> "QuerySet[LabelVideoSegment]":
118
+ """Gets LabelVideoSegments marked with the 'outside' label."""
119
+ from ...label import Label, LabelVideoSegment # Local import for models
120
+
121
+ try:
122
+ outside_label = Label.objects.get(name__iexact=outside_label_name)
123
+ return video.label_video_segments.filter(label=outside_label)
124
+ except Label.DoesNotExist:
125
+ logger.warning("Label '%s' not found in the database.", outside_label_name)
126
+ return LabelVideoSegment.objects.none()
127
+ except AttributeError:
128
+ logger.error("VideoFile instance does not have 'label_video_segments' related manager.")
129
+ return LabelVideoSegment.objects.none()
130
+ except Exception as e:
131
+ logger.error("Error getting '%s' segments for video %s: %s", outside_label_name, video.uuid, e, exc_info=True)
132
+ return LabelVideoSegment.objects.none()
133
+
134
+
135
+ def _get_outside_frame_numbers(video: "VideoFile", outside_label_name: str = "outside") -> Set[int]:
136
+ """
137
+ Gets a set of frame numbers corresponding to segments labeled as 'outside'.
138
+ """
139
+ outside_segments = _get_outside_segments(video, outside_label_name)
140
+ frame_numbers = set()
141
+ for segment in outside_segments:
142
+ frame_numbers.update(range(segment.start_frame_number, segment.end_frame_number + 1))
143
+ if frame_numbers:
144
+ logger.info("Found %d frame numbers marked as '%s' for video %s.", len(frame_numbers), outside_label_name, video.uuid)
145
+ else:
146
+ logger.info("No frame numbers marked as '%s' found for video %s.", outside_label_name, video.uuid)
147
+ return frame_numbers
148
+
149
+
150
+ def _get_outside_frames(video: "VideoFile", outside_label_name: str = "outside") -> "QuerySet[Frame]":
151
+ """
152
+ Gets a QuerySet of all unique Frame objects that fall within any segment
153
+ labeled with the specified 'outside_label_name'.
154
+ """
155
+ from ..frame import Frame # Local import
156
+
157
+ outside_segments = _get_outside_segments(video, outside_label_name)
158
+ if not outside_segments.exists():
159
+ return Frame.objects.none()
160
+
161
+ q_objects: Q | None = None
162
+ for segment in outside_segments:
163
+ clause = Q(frame_number__gte=segment.start_frame_number,
164
+ frame_number__lt=segment.end_frame_number)
165
+ q_objects = clause if q_objects is None else q_objects | clause
166
+
167
+ if q_objects is None:
168
+ return Frame.objects.none()
169
+
170
+ try:
171
+ return video.frames.filter(q_objects).distinct().order_by('frame_number')
172
+ except Exception as e:
173
+ logger.error("Error filtering outside frames for video %s: %s", video.uuid, e, exc_info=True)
174
+ return Frame.objects.none()
175
+
176
+
177
+ def _get_outside_frame_paths(video: "VideoFile", outside_label_name: str = "outside") -> List["Path"]:
178
+ """Gets the file paths of frames that fall within 'outside' segments."""
179
+ from pathlib import Path # Local import
180
+ frames = _get_outside_frames(video, outside_label_name=outside_label_name)
181
+ frame_paths = []
182
+ for frame in frames:
183
+ try:
184
+ frame_paths.append(Path(frame.image.path))
185
+ except Exception as e:
186
+ logger.warning("Could not get path for frame %s (Number: %d): %s", frame.pk, frame.frame_number, e)
187
+ ic(f"Could not get path for frame {frame.pk}: {e}")
188
+
189
+ logger.info("Found %d frame paths within '%s' segments for video %s", len(frame_paths), outside_label_name, video.uuid)
190
+ return frame_paths
191
+
192
+
193
+ def _label_segments_to_frame_annotations(video: "VideoFile"):
194
+ """Generates frame annotations based on existing LabelVideoSegments."""
195
+ logger.info("Generating frame annotations from segments for video %s", video.uuid)
196
+ processed_count = 0
197
+ try:
198
+ for lvs in video.label_video_segments.all():
199
+ lvs_duration = lvs.get_segment_len_in_s()
200
+ if lvs_duration >= 3:
201
+ try:
202
+ lvs.generate_annotations()
203
+ processed_count += 1
204
+ except Exception as e:
205
+ logger.error("Error generating annotations for segment %s (Video %s): %s", lvs.pk, video.uuid, e)
206
+ logger.info("Processed %d segments for frame annotations for video %s", processed_count, video.uuid)
207
+ except AttributeError:
208
+ logger.error("Could not generate frame annotations for video %s. 'label_video_segments' related manager not found.", video.uuid)
209
+
@@ -0,0 +1,65 @@
1
+ """
2
+ Video Metadata Model
3
+
4
+ Stores analysis results for videos (sensitive frames, detection statistics).
5
+ Created as part of Phase 1.1: Video Correction API Endpoints.
6
+ """
7
+ from django.db import models
8
+ from .video_file import VideoFile
9
+
10
+ class VideoMetadata(models.Model):
11
+ """
12
+ Stores analysis results for videos after sensitive frame detection.
13
+
14
+ This model holds the output of frame analysis operations (MiniCPM, OCR+LLM)
15
+ and provides metrics for the correction UI.
16
+ """
17
+ video = models.OneToOneField(
18
+ VideoFile,
19
+ on_delete=models.CASCADE,
20
+ related_name='metadata',
21
+ help_text="Video file this metadata belongs to"
22
+ )
23
+
24
+ # Analysis Results
25
+ sensitive_frame_count = models.IntegerField(
26
+ null=True,
27
+ blank=True,
28
+ help_text="Number of frames detected as containing sensitive information"
29
+ )
30
+ sensitive_ratio = models.FloatField(
31
+ null=True,
32
+ blank=True,
33
+ help_text="Ratio of sensitive frames to total frames (0.0-1.0)"
34
+ )
35
+ sensitive_frame_ids = models.TextField(
36
+ null=True,
37
+ blank=True,
38
+ help_text="JSON array of sensitive frame indices (0-based)"
39
+ )
40
+
41
+ # Metadata
42
+ analyzed_at = models.DateTimeField(
43
+ auto_now=True,
44
+ help_text="Timestamp of last analysis"
45
+ )
46
+
47
+ class Meta:
48
+ db_table = 'video_metadata'
49
+ verbose_name = 'Video Metadata'
50
+ verbose_name_plural = 'Video Metadata'
51
+
52
+ def __str__(self):
53
+ return f"Metadata for {self.video.uuid} ({self.sensitive_frame_count or 0} sensitive frames)"
54
+
55
+ @property
56
+ def has_analysis(self) -> bool:
57
+ """Check if this video has been analyzed."""
58
+ return self.sensitive_frame_count is not None
59
+
60
+ @property
61
+ def sensitive_percentage(self) -> float:
62
+ """Get sensitivity as percentage (0-100)."""
63
+ if self.sensitive_ratio is not None:
64
+ return self.sensitive_ratio * 100
65
+ return 0.0
@@ -0,0 +1,152 @@
1
+ """
2
+ Video Processing History Model
3
+
4
+ Tracks all video correction operations (masking, frame removal, reprocessing).
5
+ Created as part of Phase 1.1: Video Correction API Endpoints.
6
+ """
7
+ from django.db import models
8
+ from django.utils import timezone
9
+ from .video_file import VideoFile
10
+
11
+ class VideoProcessingHistory(models.Model):
12
+ """
13
+ History of all video processing operations.
14
+
15
+ Stores configuration and results of masking, frame removal, and reprocessing
16
+ operations for audit trail and download access.
17
+ """
18
+
19
+ # Operation Types
20
+ OPERATION_MASKING = 'mask_overlay'
21
+ OPERATION_FRAME_REMOVAL = 'frame_removal'
22
+ OPERATION_ANALYSIS = 'analysis'
23
+ OPERATION_REPROCESSING = 'reprocessing'
24
+
25
+ OPERATION_CHOICES = [
26
+ (OPERATION_MASKING, 'Mask Overlay'),
27
+ (OPERATION_FRAME_REMOVAL, 'Frame Removal'),
28
+ (OPERATION_ANALYSIS, 'Sensitivity Analysis'),
29
+ (OPERATION_REPROCESSING, 'Full Reprocessing'),
30
+ ]
31
+
32
+ # Status Types
33
+ STATUS_PENDING = 'pending'
34
+ STATUS_RUNNING = 'running'
35
+ STATUS_SUCCESS = 'success'
36
+ STATUS_FAILURE = 'failure'
37
+ STATUS_CANCELLED = 'cancelled'
38
+
39
+ STATUS_CHOICES = [
40
+ (STATUS_PENDING, 'Pending'),
41
+ (STATUS_RUNNING, 'Running'),
42
+ (STATUS_SUCCESS, 'Success'),
43
+ (STATUS_FAILURE, 'Failure'),
44
+ (STATUS_CANCELLED, 'Cancelled'),
45
+ ]
46
+
47
+ video = models.ForeignKey(
48
+ VideoFile,
49
+ on_delete=models.CASCADE,
50
+ related_name='processing_history',
51
+ help_text="Video file this operation was performed on"
52
+ )
53
+
54
+ operation = models.CharField(
55
+ max_length=50,
56
+ choices=OPERATION_CHOICES,
57
+ help_text="Type of processing operation"
58
+ )
59
+
60
+ status = models.CharField(
61
+ max_length=20,
62
+ choices=STATUS_CHOICES,
63
+ default=STATUS_PENDING,
64
+ help_text="Current status of the operation"
65
+ )
66
+
67
+ # Configuration & Results
68
+ config = models.JSONField(
69
+ default=dict,
70
+ help_text="Operation configuration (mask settings, frame list, etc.)"
71
+ )
72
+
73
+ output_file = models.CharField(
74
+ max_length=500,
75
+ blank=True,
76
+ help_text="Path to output file (relative to MEDIA_ROOT)"
77
+ )
78
+
79
+ details = models.TextField(
80
+ blank=True,
81
+ help_text="Additional details or error messages"
82
+ )
83
+
84
+ # Celery Integration
85
+ task_id = models.CharField(
86
+ max_length=100,
87
+ blank=True,
88
+ help_text="Celery task ID for progress tracking"
89
+ )
90
+
91
+ # Timestamps
92
+ created_at = models.DateTimeField(
93
+ auto_now_add=True,
94
+ help_text="When the operation was started"
95
+ )
96
+
97
+ completed_at = models.DateTimeField(
98
+ null=True,
99
+ blank=True,
100
+ help_text="When the operation completed (success or failure)"
101
+ )
102
+
103
+ class Meta:
104
+ db_table = 'video_processing_history'
105
+ verbose_name = 'Video Processing History'
106
+ verbose_name_plural = 'Video Processing Histories'
107
+ ordering = ['-created_at']
108
+ indexes = [
109
+ models.Index(fields=['video', '-created_at']),
110
+ models.Index(fields=['task_id']),
111
+ models.Index(fields=['status']),
112
+ ]
113
+
114
+ def __str__(self):
115
+ return f"{self.get_operation_display()} on {self.video.uuid} - {self.get_status_display()}"
116
+
117
+ def mark_running(self, save=True):
118
+ """Mark operation as running."""
119
+ self.status = self.STATUS_RUNNING
120
+ if save:
121
+ self.save(update_fields=['status'])
122
+
123
+ def mark_success(self, output_file=None, details=None, save=True):
124
+ """Mark operation as successful."""
125
+ self.status = self.STATUS_SUCCESS
126
+ self.completed_at = timezone.now()
127
+ if output_file:
128
+ self.output_file = output_file
129
+ if details:
130
+ self.details = details
131
+ if save:
132
+ self.save(update_fields=['status', 'completed_at', 'output_file', 'details'])
133
+
134
+ def mark_failure(self, error_message, save=True):
135
+ """Mark operation as failed."""
136
+ self.status = self.STATUS_FAILURE
137
+ self.completed_at = timezone.now()
138
+ self.details = error_message
139
+ if save:
140
+ self.save(update_fields=['status', 'completed_at', 'details'])
141
+
142
+ @property
143
+ def duration(self):
144
+ """Calculate operation duration if completed."""
145
+ if self.completed_at and self.created_at:
146
+ return (self.completed_at - self.created_at).total_seconds()
147
+ return None
148
+
149
+ @property
150
+ def is_complete(self) -> bool:
151
+ """Check if operation is in a terminal state."""
152
+ return self.status in [self.STATUS_SUCCESS, self.STATUS_FAILURE, self.STATUS_CANCELLED]