endoreg-db 0.8.6.4__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of endoreg-db might be problematic. Click here for more details.

Files changed (793) hide show
  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/admin.py +92 -0
  3. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  4. endoreg_db/api/views/finding_descriptions.py +0 -0
  5. endoreg_db/api_urls.py +4 -0
  6. endoreg_db/apps.py +18 -0
  7. endoreg_db/assets/dummy_model.ckpt +1 -0
  8. endoreg_db/codemods/readme.md +88 -0
  9. endoreg_db/codemods/rename_datetime_fields.py +92 -0
  10. endoreg_db/config/__init__.py +0 -0
  11. endoreg_db/config/env.py +101 -0
  12. endoreg_db/data/__init__.py +144 -0
  13. endoreg_db/data/ai_model/data.yaml +7 -0
  14. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  15. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  16. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  17. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  18. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  19. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  20. endoreg_db/data/ai_model_type/data.yaml +7 -0
  21. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  22. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  23. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  24. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  25. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  26. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  27. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  28. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  29. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  30. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  31. endoreg_db/data/case_template/rule_value/.init +0 -0
  32. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  33. endoreg_db/data/case_template/template/base.yaml +8 -0
  34. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  35. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  36. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  37. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  38. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  39. endoreg_db/data/center/data.yaml +91 -0
  40. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  41. endoreg_db/data/center_shift/ukw.yaml +9 -0
  42. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  43. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  44. endoreg_db/data/db_summary.csv +58 -0
  45. endoreg_db/data/db_summary.xlsx +0 -0
  46. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  47. endoreg_db/data/disease/hepatology.yaml +5 -0
  48. endoreg_db/data/disease/misc.yaml +5 -0
  49. endoreg_db/data/disease/renal.yaml +5 -0
  50. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  51. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  52. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  53. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  54. endoreg_db/data/distribution/date/patient.yaml +7 -0
  55. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  56. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  57. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  58. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  59. endoreg_db/data/endoscope/data.yaml +93 -0
  60. endoreg_db/data/endoscope_type/data.yaml +11 -0
  61. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  62. endoreg_db/data/event/cardiology.yaml +15 -0
  63. endoreg_db/data/event/neurology.yaml +14 -0
  64. endoreg_db/data/event/surgery.yaml +13 -0
  65. endoreg_db/data/event/thrombembolism.yaml +20 -0
  66. endoreg_db/data/examination/examinations/data.yaml +72 -0
  67. endoreg_db/data/examination/time/data.yaml +48 -0
  68. endoreg_db/data/examination/time-type/data.yaml +8 -0
  69. endoreg_db/data/examination/type/data.yaml +17 -0
  70. endoreg_db/data/examination_indication/endoscopy.yaml +424 -0
  71. endoreg_db/data/examination_indication_classification/endoscopy.yaml +160 -0
  72. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
  73. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  74. endoreg_db/data/finding/anatomy_colon.yaml +128 -0
  75. endoreg_db/data/finding/colonoscopy.yaml +40 -0
  76. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
  77. endoreg_db/data/finding/complication.yaml +16 -0
  78. endoreg_db/data/finding/data.yaml +105 -0
  79. endoreg_db/data/finding/examination_setting.yaml +16 -0
  80. endoreg_db/data/finding/medication_related.yaml +18 -0
  81. endoreg_db/data/finding/outcome.yaml +12 -0
  82. endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
  83. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
  84. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
  85. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
  86. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
  87. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
  88. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
  89. endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
  90. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
  91. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
  92. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
  93. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
  94. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
  95. endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
  96. endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
  97. endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
  98. endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
  99. endoreg_db/data/finding_classification/medication_related.yaml +23 -0
  100. endoreg_db/data/finding_classification/visualized.yaml +33 -0
  101. endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
  102. endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
  103. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
  104. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
  105. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
  106. endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +17 -0
  107. endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +57 -0
  108. endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
  109. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
  110. endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
  111. endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +229 -0
  112. endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
  114. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
  115. endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
  116. endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
  117. endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
  118. endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
  119. endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
  120. endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
  121. endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
  122. endoreg_db/data/finding_intervention/endoscopy.yaml +43 -0
  123. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
  124. endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
  125. endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
  126. endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
  127. endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
  128. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  129. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
  130. endoreg_db/data/finding_type/data.yaml +43 -0
  131. endoreg_db/data/gender/data.yaml +42 -0
  132. endoreg_db/data/information_source/annotation.yaml +6 -0
  133. endoreg_db/data/information_source/data.yaml +30 -0
  134. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  135. endoreg_db/data/information_source/medication.yaml +6 -0
  136. endoreg_db/data/information_source/prediction.yaml +7 -0
  137. endoreg_db/data/information_source_type/data.yaml +8 -0
  138. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  139. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  140. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  141. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  142. endoreg_db/data/lab_value/hematology.yaml +184 -0
  143. endoreg_db/data/lab_value/hormones.yaml +59 -0
  144. endoreg_db/data/lab_value/lipids.yaml +53 -0
  145. endoreg_db/data/lab_value/misc.yaml +76 -0
  146. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  147. endoreg_db/data/log_type/data.yaml +57 -0
  148. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  149. endoreg_db/data/lx_client_type/base.yaml +30 -0
  150. endoreg_db/data/lx_permission/base.yaml +24 -0
  151. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  152. endoreg_db/data/material/material.yaml +91 -0
  153. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  154. endoreg_db/data/medication/tah.yaml +70 -0
  155. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  156. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  157. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  158. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  159. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  160. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  161. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  162. endoreg_db/data/names_first/first_names.yaml +54 -0
  163. endoreg_db/data/names_last/last_names.yaml +51 -0
  164. endoreg_db/data/network_device/data.yaml +59 -0
  165. endoreg_db/data/network_device_type/data.yaml +12 -0
  166. endoreg_db/data/organ/data.yaml +29 -0
  167. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  168. endoreg_db/data/pdf_type/data.yaml +46 -0
  169. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  170. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  171. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  172. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  173. endoreg_db/data/profession/data.yaml +70 -0
  174. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  175. endoreg_db/data/qualification/m2.yaml +39 -0
  176. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  177. endoreg_db/data/qualification/sonography.yaml +36 -0
  178. endoreg_db/data/qualification_type/base.yaml +29 -0
  179. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  180. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  181. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  182. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  183. endoreg_db/data/requirement/age.yaml +26 -0
  184. endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
  185. endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
  186. endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
  187. endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
  188. endoreg_db/data/requirement/disease_misc.yaml +12 -0
  189. endoreg_db/data/requirement/disease_renal.yaml +96 -0
  190. endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
  191. endoreg_db/data/requirement/event_cardiology.yaml +251 -0
  192. endoreg_db/data/requirement/event_requirements.yaml +145 -0
  193. endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
  194. endoreg_db/data/requirement/gender.yaml +25 -0
  195. endoreg_db/data/requirement/lab_value.yaml +441 -0
  196. endoreg_db/data/requirement/medication.yaml +93 -0
  197. endoreg_db/data/requirement_operator/age.yaml +13 -0
  198. endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
  199. endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
  200. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
  201. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  202. endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
  203. endoreg_db/data/requirement_set_type/data.yaml +20 -0
  204. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  205. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  206. endoreg_db/data/risk/bleeding.yaml +26 -0
  207. endoreg_db/data/risk/thrombosis.yaml +37 -0
  208. endoreg_db/data/risk_type/data.yaml +27 -0
  209. endoreg_db/data/setup_config.yaml +38 -0
  210. endoreg_db/data/shift/endoscopy.yaml +21 -0
  211. endoreg_db/data/shift/m2.yaml +0 -0
  212. endoreg_db/data/shift_type/base.yaml +35 -0
  213. endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
  214. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  215. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  216. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  217. endoreg_db/data/unit/concentration.yaml +115 -0
  218. endoreg_db/data/unit/data.yaml +17 -0
  219. endoreg_db/data/unit/length.yaml +31 -0
  220. endoreg_db/data/unit/misc.yaml +20 -0
  221. endoreg_db/data/unit/rate.yaml +6 -0
  222. endoreg_db/data/unit/time.yaml +48 -0
  223. endoreg_db/data/unit/volume.yaml +35 -0
  224. endoreg_db/data/unit/weight.yaml +38 -0
  225. endoreg_db/data/waste/data.yaml +12 -0
  226. endoreg_db/exceptions.py +19 -0
  227. endoreg_db/factories/__init__.py +0 -0
  228. endoreg_db/forms/__init__.py +5 -0
  229. endoreg_db/forms/examination_form.py +11 -0
  230. endoreg_db/forms/patient_finding_intervention_form.py +18 -0
  231. endoreg_db/forms/patient_form.py +27 -0
  232. endoreg_db/forms/questionnaires/__init__.py +1 -0
  233. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  234. endoreg_db/forms/settings/__init__.py +8 -0
  235. endoreg_db/forms/unit.py +6 -0
  236. endoreg_db/helpers/__init__.py +0 -0
  237. endoreg_db/helpers/count_db.py +45 -0
  238. endoreg_db/helpers/data_loader.py +208 -0
  239. endoreg_db/helpers/default_objects.py +378 -0
  240. endoreg_db/helpers/download_segmentation_model.py +31 -0
  241. endoreg_db/helpers/interact.py +6 -0
  242. endoreg_db/helpers/test_video_helper.py +119 -0
  243. endoreg_db/logger_conf.py +140 -0
  244. endoreg_db/management/__init__.py +1 -0
  245. endoreg_db/management/commands/__init__.py +1 -0
  246. endoreg_db/management/commands/anonymize_video.py +0 -0
  247. endoreg_db/management/commands/check_auth.py +125 -0
  248. endoreg_db/management/commands/create_model_meta_from_huggingface.py +115 -0
  249. endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
  250. endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
  251. endoreg_db/management/commands/fix_video_paths.py +165 -0
  252. endoreg_db/management/commands/import_fallback_video.py +203 -0
  253. endoreg_db/management/commands/import_report.py +298 -0
  254. endoreg_db/management/commands/import_video.py +423 -0
  255. endoreg_db/management/commands/import_video_with_classification.py +367 -0
  256. endoreg_db/management/commands/init_default_ai_model.py +112 -0
  257. endoreg_db/management/commands/load_ai_model_data.py +77 -0
  258. endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
  259. endoreg_db/management/commands/load_base_db_data.py +192 -0
  260. endoreg_db/management/commands/load_center_data.py +68 -0
  261. endoreg_db/management/commands/load_contraindication_data.py +41 -0
  262. endoreg_db/management/commands/load_disease_classification_choices_data.py +41 -0
  263. endoreg_db/management/commands/load_disease_classification_data.py +41 -0
  264. endoreg_db/management/commands/load_disease_data.py +62 -0
  265. endoreg_db/management/commands/load_distribution_data.py +66 -0
  266. endoreg_db/management/commands/load_endoscope_data.py +68 -0
  267. endoreg_db/management/commands/load_event_data.py +41 -0
  268. endoreg_db/management/commands/load_examination_data.py +75 -0
  269. endoreg_db/management/commands/load_examination_indication_data.py +86 -0
  270. endoreg_db/management/commands/load_finding_data.py +128 -0
  271. endoreg_db/management/commands/load_gender_data.py +44 -0
  272. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -0
  273. endoreg_db/management/commands/load_information_source.py +51 -0
  274. endoreg_db/management/commands/load_lab_value_data.py +50 -0
  275. endoreg_db/management/commands/load_medication_data.py +103 -0
  276. endoreg_db/management/commands/load_name_data.py +37 -0
  277. endoreg_db/management/commands/load_organ_data.py +43 -0
  278. endoreg_db/management/commands/load_pdf_type_data.py +61 -0
  279. endoreg_db/management/commands/load_profession_data.py +44 -0
  280. endoreg_db/management/commands/load_qualification_data.py +59 -0
  281. endoreg_db/management/commands/load_report_reader_flag_data.py +46 -0
  282. endoreg_db/management/commands/load_requirement_data.py +180 -0
  283. endoreg_db/management/commands/load_risk_data.py +56 -0
  284. endoreg_db/management/commands/load_shift_data.py +60 -0
  285. endoreg_db/management/commands/load_tag_data.py +57 -0
  286. endoreg_db/management/commands/load_unit_data.py +46 -0
  287. endoreg_db/management/commands/load_user_groups.py +28 -0
  288. endoreg_db/management/commands/register_ai_model.py +64 -0
  289. endoreg_db/management/commands/reset_celery_schedule.py +9 -0
  290. endoreg_db/management/commands/setup_endoreg_db.py +381 -0
  291. endoreg_db/management/commands/start_filewatcher.py +106 -0
  292. endoreg_db/management/commands/storage_management.py +548 -0
  293. endoreg_db/management/commands/summarize_db_content.py +189 -0
  294. endoreg_db/management/commands/validate_video.py +204 -0
  295. endoreg_db/management/commands/validate_video_files.py +161 -0
  296. endoreg_db/management/commands/video_validation.py +22 -0
  297. endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
  298. endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
  299. endoreg_db/mermaid/binary_classification_annotation.md +50 -0
  300. endoreg_db/mermaid/classification.md +8 -0
  301. endoreg_db/mermaid/examination.md +8 -0
  302. endoreg_db/mermaid/findings.md +7 -0
  303. endoreg_db/mermaid/image_classification.md +28 -0
  304. endoreg_db/mermaid/interventions.md +8 -0
  305. endoreg_db/mermaid/morphology.md +8 -0
  306. endoreg_db/mermaid/patient_creation.md +14 -0
  307. endoreg_db/mermaid/video_segmentation_annotation.md +17 -0
  308. endoreg_db/migrations/0001_initial.py +1857 -0
  309. endoreg_db/migrations/0002_add_video_correction_models.py +52 -0
  310. endoreg_db/migrations/0003_add_center_display_name.py +30 -0
  311. endoreg_db/migrations/__init__.py +0 -0
  312. endoreg_db/models/__init__.py +359 -0
  313. endoreg_db/models/administration/__init__.py +116 -0
  314. endoreg_db/models/administration/ai/__init__.py +9 -0
  315. endoreg_db/models/administration/ai/active_model.py +35 -0
  316. endoreg_db/models/administration/ai/ai_model.py +156 -0
  317. endoreg_db/models/administration/ai/model_type.py +41 -0
  318. endoreg_db/models/administration/case/__init__.py +19 -0
  319. endoreg_db/models/administration/case/case.py +114 -0
  320. endoreg_db/models/administration/case/case_template/__init__.py +15 -0
  321. endoreg_db/models/administration/case/case_template/case_template.py +125 -0
  322. endoreg_db/models/administration/case/case_template/case_template_rule.py +269 -0
  323. endoreg_db/models/administration/case/case_template/case_template_rule_value.py +86 -0
  324. endoreg_db/models/administration/case/case_template/case_template_type.py +26 -0
  325. endoreg_db/models/administration/center/__init__.py +13 -0
  326. endoreg_db/models/administration/center/center.py +67 -0
  327. endoreg_db/models/administration/center/center_product.py +64 -0
  328. endoreg_db/models/administration/center/center_resource.py +49 -0
  329. endoreg_db/models/administration/center/center_shift.py +88 -0
  330. endoreg_db/models/administration/center/center_waste.py +30 -0
  331. endoreg_db/models/administration/permissions/__init__.py +44 -0
  332. endoreg_db/models/administration/person/__init__.py +24 -0
  333. endoreg_db/models/administration/person/employee/__init__.py +3 -0
  334. endoreg_db/models/administration/person/employee/employee.py +35 -0
  335. endoreg_db/models/administration/person/employee/employee_qualification.py +39 -0
  336. endoreg_db/models/administration/person/employee/employee_type.py +42 -0
  337. endoreg_db/models/administration/person/examiner/__init__.py +4 -0
  338. endoreg_db/models/administration/person/examiner/examiner.py +54 -0
  339. endoreg_db/models/administration/person/names/__init__.py +0 -0
  340. endoreg_db/models/administration/person/names/first_name.py +18 -0
  341. endoreg_db/models/administration/person/names/last_name.py +19 -0
  342. endoreg_db/models/administration/person/patient/__init__.py +5 -0
  343. endoreg_db/models/administration/person/patient/patient.py +460 -0
  344. endoreg_db/models/administration/person/person.py +31 -0
  345. endoreg_db/models/administration/person/profession/__init__.py +24 -0
  346. endoreg_db/models/administration/person/user/__init__.py +5 -0
  347. endoreg_db/models/administration/person/user/portal_user_information.py +37 -0
  348. endoreg_db/models/administration/product/__init__.py +14 -0
  349. endoreg_db/models/administration/product/product.py +97 -0
  350. endoreg_db/models/administration/product/product_group.py +39 -0
  351. endoreg_db/models/administration/product/product_material.py +54 -0
  352. endoreg_db/models/administration/product/product_weight.py +47 -0
  353. endoreg_db/models/administration/product/reference_product.py +130 -0
  354. endoreg_db/models/administration/qualification/__init__.py +7 -0
  355. endoreg_db/models/administration/qualification/qualification.py +37 -0
  356. endoreg_db/models/administration/qualification/qualification_type.py +35 -0
  357. endoreg_db/models/administration/shift/__init__.py +9 -0
  358. endoreg_db/models/administration/shift/scheduled_days.py +69 -0
  359. endoreg_db/models/administration/shift/shift.py +51 -0
  360. endoreg_db/models/administration/shift/shift_type.py +108 -0
  361. endoreg_db/models/label/__init__.py +24 -0
  362. endoreg_db/models/label/annotation/__init__.py +12 -0
  363. endoreg_db/models/label/annotation/image_classification.py +84 -0
  364. endoreg_db/models/label/annotation/video_segmentation_annotation.py +66 -0
  365. endoreg_db/models/label/label.py +83 -0
  366. endoreg_db/models/label/label_set.py +53 -0
  367. endoreg_db/models/label/label_type.py +29 -0
  368. endoreg_db/models/label/label_video_segment/__init__.py +3 -0
  369. endoreg_db/models/label/label_video_segment/_create_from_video.py +41 -0
  370. endoreg_db/models/label/label_video_segment/label_video_segment.py +511 -0
  371. endoreg_db/models/label/video_segmentation_label.py +31 -0
  372. endoreg_db/models/label/video_segmentation_labelset.py +27 -0
  373. endoreg_db/models/media/__init__.py +16 -0
  374. endoreg_db/models/media/frame/__init__.py +3 -0
  375. endoreg_db/models/media/frame/frame.py +111 -0
  376. endoreg_db/models/media/pdf/__init__.py +11 -0
  377. endoreg_db/models/media/pdf/raw_pdf.py +757 -0
  378. endoreg_db/models/media/pdf/report_file.py +162 -0
  379. endoreg_db/models/media/pdf/report_reader/__init__.py +7 -0
  380. endoreg_db/models/media/pdf/report_reader/report_reader_config.py +77 -0
  381. endoreg_db/models/media/pdf/report_reader/report_reader_flag.py +20 -0
  382. endoreg_db/models/media/video/__init__.py +8 -0
  383. endoreg_db/models/media/video/create_from_file.py +358 -0
  384. endoreg_db/models/media/video/pipe_1.py +213 -0
  385. endoreg_db/models/media/video/pipe_2.py +105 -0
  386. endoreg_db/models/media/video/refactor_plan.md +0 -0
  387. endoreg_db/models/media/video/video_file.py +825 -0
  388. endoreg_db/models/media/video/video_file_ai.py +443 -0
  389. endoreg_db/models/media/video/video_file_anonymize.py +349 -0
  390. endoreg_db/models/media/video/video_file_frames/__init__.py +47 -0
  391. endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +22 -0
  392. endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
  393. endoreg_db/models/media/video/video_file_frames/_delete_frames.py +104 -0
  394. endoreg_db/models/media/video/video_file_frames/_extract_frames.py +174 -0
  395. endoreg_db/models/media/video/video_file_frames/_get_frame.py +28 -0
  396. endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +27 -0
  397. endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +20 -0
  398. endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +27 -0
  399. endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +34 -0
  400. endoreg_db/models/media/video/video_file_frames/_get_frames.py +27 -0
  401. endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +129 -0
  402. endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +141 -0
  403. endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +65 -0
  404. endoreg_db/models/media/video/video_file_frames.py +0 -0
  405. endoreg_db/models/media/video/video_file_io.py +168 -0
  406. endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
  407. endoreg_db/models/media/video/video_file_meta/get_crop_template.py +45 -0
  408. endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +39 -0
  409. endoreg_db/models/media/video/video_file_meta/get_fps.py +147 -0
  410. endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +143 -0
  411. endoreg_db/models/media/video/video_file_meta/text_meta.py +134 -0
  412. endoreg_db/models/media/video/video_file_meta/video_meta.py +70 -0
  413. endoreg_db/models/media/video/video_file_segments.py +209 -0
  414. endoreg_db/models/media/video/video_metadata.py +65 -0
  415. endoreg_db/models/media/video/video_processing.py +152 -0
  416. endoreg_db/models/medical/__init__.py +146 -0
  417. endoreg_db/models/medical/contraindication/__init__.py +17 -0
  418. endoreg_db/models/medical/disease.py +156 -0
  419. endoreg_db/models/medical/event.py +137 -0
  420. endoreg_db/models/medical/examination/__init__.py +9 -0
  421. endoreg_db/models/medical/examination/examination.py +148 -0
  422. endoreg_db/models/medical/examination/examination_indication.py +278 -0
  423. endoreg_db/models/medical/examination/examination_time.py +49 -0
  424. endoreg_db/models/medical/examination/examination_time_type.py +41 -0
  425. endoreg_db/models/medical/examination/examination_type.py +48 -0
  426. endoreg_db/models/medical/finding/__init__.py +18 -0
  427. endoreg_db/models/medical/finding/finding.py +96 -0
  428. endoreg_db/models/medical/finding/finding_classification.py +142 -0
  429. endoreg_db/models/medical/finding/finding_intervention.py +52 -0
  430. endoreg_db/models/medical/finding/finding_type.py +35 -0
  431. endoreg_db/models/medical/hardware/__init__.py +8 -0
  432. endoreg_db/models/medical/hardware/endoscope.py +65 -0
  433. endoreg_db/models/medical/hardware/endoscopy_processor.py +182 -0
  434. endoreg_db/models/medical/laboratory/__init__.py +5 -0
  435. endoreg_db/models/medical/laboratory/lab_value.py +419 -0
  436. endoreg_db/models/medical/medication/__init__.py +19 -0
  437. endoreg_db/models/medical/medication/medication.py +31 -0
  438. endoreg_db/models/medical/medication/medication_indication.py +50 -0
  439. endoreg_db/models/medical/medication/medication_indication_type.py +39 -0
  440. endoreg_db/models/medical/medication/medication_intake_time.py +44 -0
  441. endoreg_db/models/medical/medication/medication_schedule.py +45 -0
  442. endoreg_db/models/medical/organ/__init__.py +35 -0
  443. endoreg_db/models/medical/patient/__init__.py +56 -0
  444. endoreg_db/models/medical/patient/medication_examples.py +38 -0
  445. endoreg_db/models/medical/patient/patient_disease.py +63 -0
  446. endoreg_db/models/medical/patient/patient_event.py +75 -0
  447. endoreg_db/models/medical/patient/patient_examination.py +249 -0
  448. endoreg_db/models/medical/patient/patient_examination_indication.py +44 -0
  449. endoreg_db/models/medical/patient/patient_finding.py +357 -0
  450. endoreg_db/models/medical/patient/patient_finding_classification.py +207 -0
  451. endoreg_db/models/medical/patient/patient_finding_intervention.py +40 -0
  452. endoreg_db/models/medical/patient/patient_lab_sample.py +148 -0
  453. endoreg_db/models/medical/patient/patient_lab_value.py +222 -0
  454. endoreg_db/models/medical/patient/patient_medication.py +104 -0
  455. endoreg_db/models/medical/patient/patient_medication_schedule.py +136 -0
  456. endoreg_db/models/medical/risk/__init__.py +7 -0
  457. endoreg_db/models/medical/risk/risk.py +72 -0
  458. endoreg_db/models/medical/risk/risk_type.py +51 -0
  459. endoreg_db/models/metadata/__init__.py +19 -0
  460. endoreg_db/models/metadata/frame_ocr_result.py +0 -0
  461. endoreg_db/models/metadata/model_meta.py +206 -0
  462. endoreg_db/models/metadata/model_meta_logic.py +343 -0
  463. endoreg_db/models/metadata/pdf_meta.py +89 -0
  464. endoreg_db/models/metadata/sensitive_meta.py +288 -0
  465. endoreg_db/models/metadata/sensitive_meta_logic.py +1048 -0
  466. endoreg_db/models/metadata/video_meta.py +332 -0
  467. endoreg_db/models/metadata/video_prediction_logic.py +190 -0
  468. endoreg_db/models/metadata/video_prediction_meta.py +270 -0
  469. endoreg_db/models/other/__init__.py +40 -0
  470. endoreg_db/models/other/distribution/__init__.py +44 -0
  471. endoreg_db/models/other/distribution/base_value_distribution.py +20 -0
  472. endoreg_db/models/other/distribution/date_value_distribution.py +89 -0
  473. endoreg_db/models/other/distribution/multiple_categorical_value_distribution.py +32 -0
  474. endoreg_db/models/other/distribution/numeric_value_distribution.py +125 -0
  475. endoreg_db/models/other/distribution/single_categorical_value_distribution.py +22 -0
  476. endoreg_db/models/other/emission/__init__.py +5 -0
  477. endoreg_db/models/other/emission/emission_factor.py +94 -0
  478. endoreg_db/models/other/gender.py +27 -0
  479. endoreg_db/models/other/information_source.py +159 -0
  480. endoreg_db/models/other/material.py +28 -0
  481. endoreg_db/models/other/resource.py +22 -0
  482. endoreg_db/models/other/tag.py +27 -0
  483. endoreg_db/models/other/transport_route.py +33 -0
  484. endoreg_db/models/other/unit.py +32 -0
  485. endoreg_db/models/other/waste.py +27 -0
  486. endoreg_db/models/requirement/__init__.py +11 -0
  487. endoreg_db/models/requirement/requirement.py +767 -0
  488. endoreg_db/models/requirement/requirement_evaluation/__init__.py +6 -0
  489. endoreg_db/models/requirement/requirement_evaluation/get_values.py +40 -0
  490. endoreg_db/models/requirement/requirement_evaluation/operator_evaluation_models.py +9 -0
  491. endoreg_db/models/requirement/requirement_evaluation/requirement_type_parser.py +95 -0
  492. endoreg_db/models/requirement/requirement_operator.py +176 -0
  493. endoreg_db/models/requirement/requirement_set.py +287 -0
  494. endoreg_db/models/rule/__init__.py +13 -0
  495. endoreg_db/models/rule/rule.py +27 -0
  496. endoreg_db/models/rule/rule_applicator.py +224 -0
  497. endoreg_db/models/rule/rule_attribute_dtype.py +17 -0
  498. endoreg_db/models/rule/rule_type.py +20 -0
  499. endoreg_db/models/rule/ruleset.py +17 -0
  500. endoreg_db/models/state/__init__.py +12 -0
  501. endoreg_db/models/state/abstract.py +11 -0
  502. endoreg_db/models/state/audit_ledger.py +150 -0
  503. endoreg_db/models/state/label_video_segment.py +22 -0
  504. endoreg_db/models/state/raw_pdf.py +187 -0
  505. endoreg_db/models/state/sensitive_meta.py +46 -0
  506. endoreg_db/models/state/video.py +232 -0
  507. endoreg_db/models/upload_job.py +99 -0
  508. endoreg_db/models/utils.py +135 -0
  509. endoreg_db/queries/__init__.py +5 -0
  510. endoreg_db/queries/annotations/__init__.py +3 -0
  511. endoreg_db/queries/annotations/legacy.py +158 -0
  512. endoreg_db/queries/sanity/__init_.py +0 -0
  513. endoreg_db/renames.yml +8 -0
  514. endoreg_db/root_urls.py +9 -0
  515. endoreg_db/schemas/__init__.py +0 -0
  516. endoreg_db/schemas/examination_evaluation.py +27 -0
  517. endoreg_db/serializers/Frames_NICE_and_PARIS_classifications.py +775 -0
  518. endoreg_db/serializers/__init__.py +118 -0
  519. endoreg_db/serializers/_old/raw_pdf_meta_validation.py +223 -0
  520. endoreg_db/serializers/_old/raw_video_meta_validation.py +179 -0
  521. endoreg_db/serializers/_old/video.py +71 -0
  522. endoreg_db/serializers/administration/__init__.py +14 -0
  523. endoreg_db/serializers/administration/ai/__init__.py +10 -0
  524. endoreg_db/serializers/administration/ai/active_model.py +10 -0
  525. endoreg_db/serializers/administration/ai/ai_model.py +18 -0
  526. endoreg_db/serializers/administration/ai/model_type.py +10 -0
  527. endoreg_db/serializers/administration/center.py +9 -0
  528. endoreg_db/serializers/administration/gender.py +9 -0
  529. endoreg_db/serializers/anonymization.py +69 -0
  530. endoreg_db/serializers/evaluation/examination_evaluation.py +1 -0
  531. endoreg_db/serializers/examination/__init__.py +10 -0
  532. endoreg_db/serializers/examination/base.py +46 -0
  533. endoreg_db/serializers/examination/dropdown.py +21 -0
  534. endoreg_db/serializers/examination_serializer.py +12 -0
  535. endoreg_db/serializers/finding/__init__.py +5 -0
  536. endoreg_db/serializers/finding/finding.py +54 -0
  537. endoreg_db/serializers/finding_classification/__init__.py +7 -0
  538. endoreg_db/serializers/finding_classification/choice.py +19 -0
  539. endoreg_db/serializers/finding_classification/classification.py +13 -0
  540. endoreg_db/serializers/label/__init__.py +7 -0
  541. endoreg_db/serializers/label/image_classification_annotation.py +62 -0
  542. endoreg_db/serializers/label/label.py +15 -0
  543. endoreg_db/serializers/label_video_segment/__init__.py +7 -0
  544. endoreg_db/serializers/label_video_segment/_lvs_create.py +149 -0
  545. endoreg_db/serializers/label_video_segment/_lvs_update.py +138 -0
  546. endoreg_db/serializers/label_video_segment/_lvs_validate.py +149 -0
  547. endoreg_db/serializers/label_video_segment/label_video_segment.py +344 -0
  548. endoreg_db/serializers/label_video_segment/label_video_segment_annotation.py +99 -0
  549. endoreg_db/serializers/label_video_segment/label_video_segment_update.py +163 -0
  550. endoreg_db/serializers/meta/__init__.py +19 -0
  551. endoreg_db/serializers/meta/pdf_file_meta_extraction.py +115 -0
  552. endoreg_db/serializers/meta/report_meta.py +53 -0
  553. endoreg_db/serializers/meta/sensitive_meta_detail.py +162 -0
  554. endoreg_db/serializers/meta/sensitive_meta_update.py +148 -0
  555. endoreg_db/serializers/meta/sensitive_meta_verification.py +59 -0
  556. endoreg_db/serializers/meta/video_meta.py +39 -0
  557. endoreg_db/serializers/misc/__init__.py +14 -0
  558. endoreg_db/serializers/misc/file_overview.py +182 -0
  559. endoreg_db/serializers/misc/sensitive_patient_data.py +120 -0
  560. endoreg_db/serializers/misc/stats.py +33 -0
  561. endoreg_db/serializers/misc/translatable_field_mix_in.py +44 -0
  562. endoreg_db/serializers/misc/upload_job.py +71 -0
  563. endoreg_db/serializers/patient/__init__.py +11 -0
  564. endoreg_db/serializers/patient/patient.py +86 -0
  565. endoreg_db/serializers/patient/patient_dropdown.py +27 -0
  566. endoreg_db/serializers/patient_examination/__init__.py +7 -0
  567. endoreg_db/serializers/patient_examination/patient_examination.py +141 -0
  568. endoreg_db/serializers/patient_finding/__init__.py +15 -0
  569. endoreg_db/serializers/patient_finding/patient_finding.py +31 -0
  570. endoreg_db/serializers/patient_finding/patient_finding_classification.py +39 -0
  571. endoreg_db/serializers/patient_finding/patient_finding_detail.py +53 -0
  572. endoreg_db/serializers/patient_finding/patient_finding_intervention.py +26 -0
  573. endoreg_db/serializers/patient_finding/patient_finding_list.py +41 -0
  574. endoreg_db/serializers/patient_finding/patient_finding_write.py +126 -0
  575. endoreg_db/serializers/pdf/__init__.py +5 -0
  576. endoreg_db/serializers/pdf/anony_text_validation.py +85 -0
  577. endoreg_db/serializers/report/__init__.py +9 -0
  578. endoreg_db/serializers/report/mixins.py +45 -0
  579. endoreg_db/serializers/report/report.py +105 -0
  580. endoreg_db/serializers/report/report_list.py +22 -0
  581. endoreg_db/serializers/report/secure_file_url.py +26 -0
  582. endoreg_db/serializers/requirements/requirement_schema.py +25 -0
  583. endoreg_db/serializers/requirements/requirement_sets.py +29 -0
  584. endoreg_db/serializers/sensitive_meta_serializer.py +282 -0
  585. endoreg_db/serializers/video/__init__.py +7 -0
  586. endoreg_db/serializers/video/segmentation.py +263 -0
  587. endoreg_db/serializers/video/video_file_brief.py +10 -0
  588. endoreg_db/serializers/video/video_file_detail.py +83 -0
  589. endoreg_db/serializers/video/video_file_list.py +67 -0
  590. endoreg_db/serializers/video/video_metadata.py +105 -0
  591. endoreg_db/serializers/video/video_processing_history.py +153 -0
  592. endoreg_db/serializers/video_examination.py +198 -0
  593. endoreg_db/services/__init__.py +5 -0
  594. endoreg_db/services/anonymization.py +223 -0
  595. endoreg_db/services/examination_evaluation.py +149 -0
  596. endoreg_db/services/finding_description_service.py +0 -0
  597. endoreg_db/services/lookup_service.py +411 -0
  598. endoreg_db/services/lookup_store.py +266 -0
  599. endoreg_db/services/pdf_import.py +1382 -0
  600. endoreg_db/services/polling_coordinator.py +288 -0
  601. endoreg_db/services/pseudonym_service.py +89 -0
  602. endoreg_db/services/requirements_object.py +147 -0
  603. endoreg_db/services/segment_sync.py +155 -0
  604. endoreg_db/services/storage_aware_video_processor.py +344 -0
  605. endoreg_db/services/video_import.py +1259 -0
  606. endoreg_db/tasks/upload_tasks.py +207 -0
  607. endoreg_db/tasks/video_ingest.py +157 -0
  608. endoreg_db/tasks/video_processing_tasks.py +327 -0
  609. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  610. endoreg_db/templates/admin/start_examination.html +12 -0
  611. endoreg_db/templates/timeline.html +176 -0
  612. endoreg_db/urls/__init__.py +83 -0
  613. endoreg_db/urls/anonymization.py +32 -0
  614. endoreg_db/urls/auth.py +16 -0
  615. endoreg_db/urls/classification.py +39 -0
  616. endoreg_db/urls/examination.py +54 -0
  617. endoreg_db/urls/files.py +6 -0
  618. endoreg_db/urls/label_video_segment_validate.py +33 -0
  619. endoreg_db/urls/label_video_segments.py +46 -0
  620. endoreg_db/urls/media.py +227 -0
  621. endoreg_db/urls/patient.py +19 -0
  622. endoreg_db/urls/report.py +48 -0
  623. endoreg_db/urls/requirements.py +13 -0
  624. endoreg_db/urls/sensitive_meta.py +0 -0
  625. endoreg_db/urls/stats.py +46 -0
  626. endoreg_db/urls/upload.py +20 -0
  627. endoreg_db/urls/video.py +61 -0
  628. endoreg_db/urls.py +9 -0
  629. endoreg_db/utils/__init__.py +88 -0
  630. endoreg_db/utils/ai/__init__.py +9 -0
  631. endoreg_db/utils/ai/get.py +5 -0
  632. endoreg_db/utils/ai/inference_dataset.py +52 -0
  633. endoreg_db/utils/ai/multilabel_classification_net.py +159 -0
  634. endoreg_db/utils/ai/postprocess.py +63 -0
  635. endoreg_db/utils/ai/predict.py +291 -0
  636. endoreg_db/utils/ai/preprocess.py +68 -0
  637. endoreg_db/utils/calc_duration_seconds.py +24 -0
  638. endoreg_db/utils/case_generator/__init__.py +0 -0
  639. endoreg_db/utils/case_generator/case_generator.py +159 -0
  640. endoreg_db/utils/case_generator/lab_sample_factory.py +33 -0
  641. endoreg_db/utils/case_generator/utils.py +30 -0
  642. endoreg_db/utils/check_video_files.py +148 -0
  643. endoreg_db/utils/cropping.py +29 -0
  644. endoreg_db/utils/dataloader.py +175 -0
  645. endoreg_db/utils/dates.py +60 -0
  646. endoreg_db/utils/env.py +33 -0
  647. endoreg_db/utils/extract_specific_frames.py +72 -0
  648. endoreg_db/utils/file_operations.py +58 -0
  649. endoreg_db/utils/fix_video_path_direct.py +141 -0
  650. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  651. endoreg_db/utils/hashs.py +153 -0
  652. endoreg_db/utils/links/__init__.py +0 -0
  653. endoreg_db/utils/links/requirement_link.py +193 -0
  654. endoreg_db/utils/mime_types.py +0 -0
  655. endoreg_db/utils/names.py +76 -0
  656. endoreg_db/utils/ocr.py +190 -0
  657. endoreg_db/utils/parse_and_generate_yaml.py +46 -0
  658. endoreg_db/utils/paths.py +95 -0
  659. endoreg_db/utils/permissions.py +143 -0
  660. endoreg_db/utils/pipelines/Readme.md +235 -0
  661. endoreg_db/utils/pipelines/__init__.py +0 -0
  662. endoreg_db/utils/pipelines/process_video_dir.py +120 -0
  663. endoreg_db/utils/product/__init__.py +0 -0
  664. endoreg_db/utils/product/sum_emissions.py +20 -0
  665. endoreg_db/utils/product/sum_weights.py +18 -0
  666. endoreg_db/utils/pydantic_models/__init__.py +6 -0
  667. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  668. endoreg_db/utils/requirement_helpers.py +0 -0
  669. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  670. endoreg_db/utils/requirement_operator_logic/lab_value_operators.py +578 -0
  671. endoreg_db/utils/requirement_operator_logic/model_evaluators.py +368 -0
  672. endoreg_db/utils/setup_config.py +177 -0
  673. endoreg_db/utils/translation.py +27 -0
  674. endoreg_db/utils/uuid.py +4 -0
  675. endoreg_db/utils/validate_endo_roi.py +19 -0
  676. endoreg_db/utils/validate_subcategory_dict.py +91 -0
  677. endoreg_db/utils/validate_video_detailed.py +357 -0
  678. endoreg_db/utils/video/__init__.py +26 -0
  679. endoreg_db/utils/video/extract_frames.py +88 -0
  680. endoreg_db/utils/video/ffmpeg_wrapper.py +835 -0
  681. endoreg_db/utils/video/names.py +42 -0
  682. endoreg_db/utils/video/streaming_processor.py +312 -0
  683. endoreg_db/utils/video/video_splitter.py +94 -0
  684. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +238 -0
  685. endoreg_db/views/__init__.py +274 -0
  686. endoreg_db/views/anonymization/__init__.py +27 -0
  687. endoreg_db/views/anonymization/media_management.py +454 -0
  688. endoreg_db/views/anonymization/overview.py +216 -0
  689. endoreg_db/views/anonymization/validate.py +107 -0
  690. endoreg_db/views/auth/__init__.py +13 -0
  691. endoreg_db/views/auth/keycloak.py +113 -0
  692. endoreg_db/views/examination/__init__.py +33 -0
  693. endoreg_db/views/examination/examination.py +37 -0
  694. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  695. endoreg_db/views/examination/get_finding_classification_choices.py +59 -0
  696. endoreg_db/views/examination/get_finding_classifications.py +36 -0
  697. endoreg_db/views/examination/get_findings.py +41 -0
  698. endoreg_db/views/examination/get_instruments.py +18 -0
  699. endoreg_db/views/examination/get_interventions.py +14 -0
  700. endoreg_db/views/finding/__init__.py +9 -0
  701. endoreg_db/views/finding/finding.py +112 -0
  702. endoreg_db/views/finding/get_classifications.py +14 -0
  703. endoreg_db/views/finding/get_interventions.py +17 -0
  704. endoreg_db/views/finding_classification/__init__.py +13 -0
  705. endoreg_db/views/finding_classification/base.py +0 -0
  706. endoreg_db/views/finding_classification/finding_classification.py +42 -0
  707. endoreg_db/views/finding_classification/get_classification_choices.py +55 -0
  708. endoreg_db/views/label/__init__.py +5 -0
  709. endoreg_db/views/label/label.py +15 -0
  710. endoreg_db/views/label_video_segment/__init__.py +16 -0
  711. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +44 -0
  712. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +50 -0
  713. endoreg_db/views/label_video_segment/label_video_segment.py +77 -0
  714. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +174 -0
  715. endoreg_db/views/label_video_segment/label_video_segment_detail.py +73 -0
  716. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +46 -0
  717. endoreg_db/views/label_video_segment/validate.py +226 -0
  718. endoreg_db/views/media/__init__.py +45 -0
  719. endoreg_db/views/media/pdf_media.py +388 -0
  720. endoreg_db/views/media/segments.py +71 -0
  721. endoreg_db/views/media/sensitive_metadata.py +314 -0
  722. endoreg_db/views/media/video_media.py +272 -0
  723. endoreg_db/views/media/video_segments.py +524 -0
  724. endoreg_db/views/meta/__init__.py +15 -0
  725. endoreg_db/views/meta/available_files_list.py +146 -0
  726. endoreg_db/views/meta/report_meta.py +53 -0
  727. endoreg_db/views/meta/sensitive_meta_detail.py +148 -0
  728. endoreg_db/views/meta/sensitive_meta_list.py +104 -0
  729. endoreg_db/views/meta/sensitive_meta_verification.py +71 -0
  730. endoreg_db/views/misc/__init__.py +63 -0
  731. endoreg_db/views/misc/center.py +13 -0
  732. endoreg_db/views/misc/csrf.py +7 -0
  733. endoreg_db/views/misc/gender.py +14 -0
  734. endoreg_db/views/misc/secure_file_serving_view.py +80 -0
  735. endoreg_db/views/misc/secure_file_url_view.py +84 -0
  736. endoreg_db/views/misc/secure_url_validate.py +79 -0
  737. endoreg_db/views/misc/stats.py +220 -0
  738. endoreg_db/views/misc/translation.py +182 -0
  739. endoreg_db/views/misc/upload_views.py +240 -0
  740. endoreg_db/views/patient/__init__.py +5 -0
  741. endoreg_db/views/patient/patient.py +210 -0
  742. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +164 -0
  743. endoreg_db/views/patient_examination/__init__.py +11 -0
  744. endoreg_db/views/patient_examination/patient_examination.py +140 -0
  745. endoreg_db/views/patient_examination/patient_examination_create.py +63 -0
  746. endoreg_db/views/patient_examination/patient_examination_detail.py +66 -0
  747. endoreg_db/views/patient_examination/patient_examination_list.py +68 -0
  748. endoreg_db/views/patient_examination/video.py +194 -0
  749. endoreg_db/views/patient_finding/__init__.py +7 -0
  750. endoreg_db/views/patient_finding/base.py +0 -0
  751. endoreg_db/views/patient_finding/patient_finding.py +64 -0
  752. endoreg_db/views/patient_finding/patient_finding_optimized.py +259 -0
  753. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  754. endoreg_db/views/patient_finding_classification/pfc_create.py +67 -0
  755. endoreg_db/views/patient_finding_location/__init__.py +5 -0
  756. endoreg_db/views/patient_finding_location/pfl_create.py +70 -0
  757. endoreg_db/views/patient_finding_morphology/__init__.py +5 -0
  758. endoreg_db/views/patient_finding_morphology/pfm_create.py +70 -0
  759. endoreg_db/views/pdf/__init__.py +8 -0
  760. endoreg_db/views/pdf/pdf_stream.py +186 -0
  761. endoreg_db/views/pdf/reimport.py +177 -0
  762. endoreg_db/views/report/__init__.py +9 -0
  763. endoreg_db/views/report/report_list.py +112 -0
  764. endoreg_db/views/report/report_with_secure_url.py +28 -0
  765. endoreg_db/views/report/start_examination.py +7 -0
  766. endoreg_db/views/requirement/__init__.py +10 -0
  767. endoreg_db/views/requirement/evaluate.py +279 -0
  768. endoreg_db/views/requirement/lookup.py +367 -0
  769. endoreg_db/views/requirement/lookup_store.py +252 -0
  770. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  771. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  772. endoreg_db/views/stats/__init__.py +13 -0
  773. endoreg_db/views/stats/stats_views.py +229 -0
  774. endoreg_db/views/video/__init__.py +59 -0
  775. endoreg_db/views/video/correction.py +530 -0
  776. endoreg_db/views/video/reimport.py +195 -0
  777. endoreg_db/views/video/segmentation.py +274 -0
  778. endoreg_db/views/video/task_status.py +49 -0
  779. endoreg_db/views/video/timeline.py +46 -0
  780. endoreg_db/views/video/video_analyze.py +52 -0
  781. endoreg_db/views/video/video_apply_mask.py +48 -0
  782. endoreg_db/views/video/video_correction.py +21 -0
  783. endoreg_db/views/video/video_download_processed.py +58 -0
  784. endoreg_db/views/video/video_examination_viewset.py +242 -0
  785. endoreg_db/views/video/video_meta.py +29 -0
  786. endoreg_db/views/video/video_processing_history.py +24 -0
  787. endoreg_db/views/video/video_remove_frames.py +48 -0
  788. endoreg_db/views/video/video_stream.py +306 -0
  789. endoreg_db/views.py +0 -0
  790. endoreg_db-0.8.6.4.dist-info/METADATA +383 -0
  791. endoreg_db-0.8.6.4.dist-info/RECORD +793 -0
  792. endoreg_db-0.8.6.4.dist-info/WHEEL +4 -0
  793. endoreg_db-0.8.6.4.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,39 @@
1
+ from django.db import models
2
+ from typing import TYPE_CHECKING
3
+
4
+ if TYPE_CHECKING:
5
+ from endoreg_db.models import (
6
+ Product,
7
+ ReferenceProduct,
8
+ )
9
+
10
+ class ProductGroupManager(models.Manager):
11
+ def get_by_natural_key(self, name):
12
+ return self.get(name=name)
13
+
14
+ class ProductGroup(models.Model):
15
+ objects = ProductGroupManager()
16
+
17
+ name = models.CharField(max_length=255)
18
+
19
+ if TYPE_CHECKING:
20
+ reference_product: "ReferenceProduct"
21
+ products: models.QuerySet["Product"]
22
+
23
+ def natural_key(self):
24
+ return (self.name,)
25
+
26
+ def __str__(self):
27
+ return str(self.name)
28
+
29
+ def get_products(self) -> models.QuerySet["Product"]:
30
+ from .product import Product
31
+ products = self.products.all()
32
+ if products:
33
+ return products
34
+ else:
35
+ return Product.objects.none()
36
+
37
+ def get_reference_product(self) -> "None | ReferenceProduct":
38
+ return self.reference_product
39
+
@@ -0,0 +1,54 @@
1
+ from django.db import models
2
+ from typing import TYPE_CHECKING
3
+
4
+ from endoreg_db.models.other.unit import Unit
5
+
6
+ if TYPE_CHECKING:
7
+ from ...other.emission import EmissionFactor
8
+ from ...other.unit import Unit
9
+ from .product import Product
10
+ from ...other.material import Material
11
+
12
+ class ProductMaterial(models.Model):
13
+ component = models.CharField(max_length=255)
14
+ material = models.ForeignKey(
15
+ "Material",
16
+ on_delete=models.CASCADE,
17
+ related_name="material_product_materials", # Changed related_name
18
+ )
19
+ product = models.ForeignKey(
20
+ "Product",
21
+ on_delete=models.CASCADE,
22
+ related_name="product_product_materials" # Changed related_name
23
+ )
24
+ unit = models.ForeignKey(
25
+ "Unit",
26
+ on_delete=models.CASCADE,
27
+ related_name="unit_product_materials", # Changed related_name
28
+ )
29
+ quantity = models.FloatField()
30
+
31
+ if TYPE_CHECKING:
32
+ product: "Product"
33
+ material: "Material"
34
+ unit: "Unit"
35
+ emission_factor: "EmissionFactor"
36
+
37
+ def get_emission(self) -> tuple[float, Unit]:
38
+ emission_factor = self.material.emission_factor
39
+ if emission_factor is None:
40
+ raise Exception("No emission factor for material " + self.material.name + " found.")
41
+
42
+ # make sure product_material.unit is the same as emission_factor.unit
43
+ if self.unit != emission_factor.unit:
44
+ raise Exception("Unit mismatch: " + self.unit.name + " != " + emission_factor.unit.name)
45
+
46
+ emmision_value = emission_factor.value * self.quantity
47
+ emission_unit = emission_factor.unit
48
+ return emmision_value, emission_unit
49
+
50
+ def __str__(self) -> str:
51
+ return f"{self.product.name} - {self.material.name} - {self.quantity} {self.unit.name}"
52
+
53
+
54
+
@@ -0,0 +1,47 @@
1
+ from django.db import models
2
+ import pandas as pd
3
+ from typing import TYPE_CHECKING
4
+
5
+ if TYPE_CHECKING:
6
+ from .product import Product
7
+ from ...other.unit import Unit
8
+
9
+ class ProductWeightManager(models.Manager):
10
+ def get_by_natural_key(self, product, product_group, weight):
11
+ return self.get(product=product, product_group=product_group, weight=weight)
12
+
13
+ class ProductWeight(models.Model):
14
+ objects = ProductWeightManager()
15
+
16
+ name = models.CharField(max_length=255, null = True)
17
+ product = models.ForeignKey("Product", on_delete=models.CASCADE)
18
+ measured = models.FloatField(null=True)
19
+ verified = models.FloatField(null=True)
20
+ manufacturer = models.FloatField(null=True)
21
+ unit = models.ForeignKey("Unit", on_delete=models.SET_NULL, null=True)
22
+
23
+ if TYPE_CHECKING:
24
+ product: "Product"
25
+ unit: "Unit"
26
+
27
+ def get_weight(self):
28
+ if not pd.isnull(self.verified):
29
+ return self.verified
30
+ elif not pd.isnull(self.measured):
31
+ return self.measured
32
+ elif not pd.isnull(self.manufacturer):
33
+ return self.manufacturer
34
+ else:
35
+ return None
36
+
37
+ def get_weight_source(self):
38
+ if not pd.isnull(self.verified):
39
+ return "verified"
40
+ elif not pd.isnull(self.measured):
41
+ return "measured"
42
+ elif not pd.isnull(self.manufacturer):
43
+ return "manufacturer"
44
+ else:
45
+ return None
46
+ def __str__(self):
47
+ return f"{self.product} - {self.get_weight()} {self.unit} (Source: {self.get_weight_source()})"
@@ -0,0 +1,130 @@
1
+ from django.db import models
2
+ from typing import TYPE_CHECKING
3
+ if TYPE_CHECKING:
4
+ from ...other.emission import EmissionFactor
5
+ from .product import Product
6
+ from .product_group import ProductGroup
7
+ class ReferenceProductManager(models.Manager):
8
+ def get_by_natural_key(self, product_name:str, product_group_name:str):
9
+ return self.get(product__name=product_name, product_group__name=product_group_name)
10
+
11
+ class ReferenceProduct(models.Model):
12
+ name = models.CharField(max_length=255)
13
+ product = models.ForeignKey(
14
+ "Product",
15
+ on_delete=models.CASCADE,
16
+ related_name="reference_products",
17
+ )
18
+ product_group = models.OneToOneField(
19
+ "ProductGroup",
20
+ on_delete=models.CASCADE,
21
+ related_name="reference_product" # Changed from "reference_products"
22
+ )
23
+ emission_factor_total = models.ForeignKey(
24
+ "EmissionFactor",
25
+ on_delete=models.SET_NULL,
26
+ null=True,
27
+ blank = True,
28
+ related_name="reference_products"
29
+ )
30
+ emission_factor_package = models.ForeignKey(
31
+ "EmissionFactor",
32
+ on_delete=models.SET_NULL,
33
+ null=True,
34
+ related_name="reference_product_package"
35
+ )
36
+ emission_factor_product = models.ForeignKey(
37
+ "EmissionFactor",
38
+ on_delete=models.SET_NULL,
39
+ null=True,
40
+ related_name="reference_product_product"
41
+ )
42
+
43
+ if TYPE_CHECKING:
44
+ product: "Product"
45
+ product_group: "ProductGroup"
46
+ emission_factor_total: "EmissionFactor"
47
+ emission_factor_package: "EmissionFactor"
48
+ emission_factor_product: "EmissionFactor"
49
+
50
+ objects = ReferenceProductManager()
51
+
52
+ def __str__(self):
53
+ return self.product.name + " (" + self.product_group.name + ")"
54
+
55
+ def set_emission_factors(self):
56
+ from ...other.emission import EmissionFactor
57
+ product = self.product
58
+ materials = product.product_materials.all()
59
+ emission_factor_name = f"{self.product_group.name}_{product.name}_total_emission_factor"
60
+ emission_factor_package_name = f"{self.product_group.name}_{product.name}_package_emission_factor"
61
+ emission_factor_product_name = f"{self.product_group.name}_{product.name}_product_emission_factor"
62
+
63
+ product_emissions = 0
64
+ package_emissions = 0
65
+
66
+ product_weight, product_weight_unit = product.get_product_material_weight()
67
+ package_weight, package_weight_unit = product.get_package_material_weight()
68
+ product_emission, product_emission_unit = product.get_product_material_emission()
69
+ package_emission, package_emission_unit = product.get_package_material_emission()
70
+
71
+ total_weight = product_weight + package_weight
72
+ total_emission = product_emission + package_emission
73
+
74
+ reference_unit = product_weight_unit
75
+ assert reference_unit == package_weight_unit, "Package weight units do not match"
76
+ assert reference_unit == product_emission_unit, "Product emission units do not match"
77
+ assert reference_unit == package_emission_unit, "Package emission units do not match"
78
+
79
+ product_emission_factor_value = product_emission / product_weight
80
+ package_emission_factor_value = package_emission / package_weight
81
+ total_emission_factor_value = total_emission / total_weight
82
+
83
+ emission_factor, created = EmissionFactor.objects.get_or_create(
84
+ name=emission_factor_name,
85
+ defaults={
86
+ "name": emission_factor_name,
87
+ "value": total_emission_factor_value,
88
+ "unit": reference_unit
89
+ }
90
+ )
91
+ self.emission_factor_total = emission_factor
92
+
93
+ emission_factor_package, created = EmissionFactor.objects.get_or_create(
94
+ name=emission_factor_package_name,
95
+ defaults={
96
+ "name": emission_factor_package_name,
97
+ "value": package_emission_factor_value,
98
+ "unit": reference_unit
99
+ }
100
+ )
101
+ self.emission_factor_package = emission_factor_package
102
+
103
+ emission_factor_product, created = EmissionFactor.objects.get_or_create(
104
+ name=emission_factor_product_name,
105
+ defaults={
106
+ "name": emission_factor_product_name,
107
+ "value": product_emission_factor_value,
108
+ "unit": reference_unit
109
+ }
110
+ )
111
+ self.emission_factor_product = emission_factor_product
112
+
113
+ self.save()
114
+
115
+ def get_emission_factor(self, component:str):
116
+ # check if emission_factor_total exists:
117
+ if self.emission_factor_total is None:
118
+ self.set_emission_factors()
119
+
120
+ if component == "total":
121
+ return self.emission_factor_total
122
+ elif component == "package":
123
+ return self.emission_factor_package
124
+ elif component == "product":
125
+ return self.emission_factor_product
126
+ else:
127
+ raise Exception("Unknown component: " + component)
128
+
129
+
130
+
@@ -0,0 +1,7 @@
1
+ from .qualification import Qualification
2
+ from .qualification_type import QualificationType
3
+
4
+ __all__ = [
5
+ "Qualification",
6
+ "QualificationType",
7
+ ]
@@ -0,0 +1,37 @@
1
+ from django.db import models
2
+ from typing import TYPE_CHECKING
3
+
4
+ if TYPE_CHECKING:
5
+ from endoreg_db.models import (
6
+ QualificationType,
7
+ )
8
+
9
+ class QualificationManager(models.Manager):
10
+ def get_queryset(self):
11
+ """
12
+ Returns a queryset of qualifications filtered to include only active entries.
13
+ """
14
+ return super().get_queryset().filter(is_active=True)
15
+
16
+ class Qualification(models.Model):
17
+ """
18
+ Model representing a qualification.
19
+ """
20
+ name = models.CharField(max_length=255, unique=True)
21
+ description = models.TextField(blank=True, null=True)
22
+ is_active = models.BooleanField(default=True)
23
+
24
+ qualification_types = models.ManyToManyField(
25
+ "QualificationType",
26
+ related_name="qualifications",
27
+ )
28
+ if TYPE_CHECKING:
29
+ qualification_types: models.QuerySet["QualificationType"]
30
+
31
+ objects = QualificationManager()
32
+
33
+ def __str__(self):
34
+ """
35
+ Returns the string representation of the qualification's name.
36
+ """
37
+ return str(self.name)
@@ -0,0 +1,35 @@
1
+ from django.db import models
2
+ from typing import TYPE_CHECKING
3
+
4
+ if TYPE_CHECKING:
5
+ from endoreg_db.models import (
6
+ Qualification,
7
+ )
8
+
9
+ class QualificationTypeManager(models.Manager):
10
+ def get_queryset(self):
11
+ """
12
+ Returns a queryset of active qualification types.
13
+
14
+ Only includes records where the `is_active` field is set to True.
15
+ """
16
+ return super().get_queryset().filter(is_active=True)
17
+
18
+ class QualificationType(models.Model):
19
+ """
20
+ Model representing a qualification type.
21
+ """
22
+ name = models.CharField(max_length=255, unique=True)
23
+ description = models.TextField(blank=True, null=True)
24
+ is_active = models.BooleanField(default=True)
25
+
26
+ objects = QualificationTypeManager()
27
+
28
+ if TYPE_CHECKING:
29
+ qualification: models.QuerySet["Qualification"]
30
+
31
+ def __str__(self):
32
+ """
33
+ Returns the string representation of the qualification type's name.
34
+ """
35
+ return str(self.name)
@@ -0,0 +1,9 @@
1
+ from .shift import Shift
2
+ from .shift_type import ShiftType
3
+ from .scheduled_days import ScheduledDays
4
+
5
+ __all__ = [
6
+ "Shift",
7
+ "ShiftType",
8
+ "ScheduledDays",
9
+ ]
@@ -0,0 +1,69 @@
1
+ from django.db import models
2
+
3
+ from typing import TYPE_CHECKING
4
+
5
+ if TYPE_CHECKING:
6
+ from endoreg_db.models import (
7
+ CenterShift,
8
+ )
9
+
10
+ class ScheduledDaysManager(models.Manager):
11
+ def get_by_natural_key(self, name):
12
+ """
13
+ Retrieves a ScheduledDays instance by its unique name.
14
+
15
+ Args:
16
+ name: The unique name of the ScheduledDays instance to retrieve.
17
+
18
+ Returns:
19
+ The ScheduledDays instance matching the given name.
20
+ """
21
+ return self.get(name=name)
22
+
23
+ class ScheduledDays(models.Model):
24
+ """
25
+ Model representing scheduled days for a shift.
26
+ """
27
+ name = models.CharField(
28
+ max_length=255,
29
+ unique=True,
30
+ help_text="Name of the scheduled days.",
31
+ )
32
+ working_days = models.BooleanField(
33
+ null=True,
34
+ blank=True,
35
+ default=True,
36
+ )
37
+
38
+ non_working_days = models.BooleanField(
39
+ null=True,
40
+ blank=True,
41
+ default=False,
42
+ )
43
+
44
+ limited_time = models.BooleanField(
45
+ null=True,
46
+ blank=True,
47
+ default=False,
48
+ )
49
+
50
+ start_date = models.DateField(
51
+ null=True,
52
+ blank=True,
53
+ )
54
+
55
+ end_date = models.DateField(
56
+ null=True,
57
+ blank=True,
58
+ )
59
+
60
+ objects = ScheduledDaysManager()
61
+
62
+ if TYPE_CHECKING:
63
+ center_shifts: models.QuerySet["CenterShift"]
64
+
65
+ def __str__(self):
66
+ """
67
+ Returns a string representation of the scheduled day, including its name and date range.
68
+ """
69
+ return f"{self.name} - {self.start_date} to {self.end_date}"
@@ -0,0 +1,51 @@
1
+ from django.db import models
2
+ from typing import TYPE_CHECKING
3
+
4
+
5
+ if TYPE_CHECKING:
6
+ from endoreg_db.models import (
7
+ ShiftType,
8
+ Qualification,
9
+ CenterShift,
10
+ )
11
+
12
+ class ShiftManager(models.Manager):
13
+ def get_queryset(self):
14
+ """
15
+ Returns a queryset of active shifts.
16
+
17
+ Only includes shifts where the 'is_active' field is set to True.
18
+ """
19
+ return super().get_queryset().filter(is_active=True)
20
+
21
+ class Shift(models.Model):
22
+ """
23
+ Model representing a shift.
24
+ """
25
+ name = models.CharField(max_length=255, unique=True)
26
+ description = models.TextField(blank=True, null=True)
27
+ is_active = models.BooleanField(default=True)
28
+
29
+
30
+ shift_types = models.ManyToManyField(
31
+ "ShiftType",
32
+ related_name="shifts",
33
+ )
34
+
35
+ required_qualifications = models.ManyToManyField(
36
+ "Qualification",
37
+ related_name="shifts",
38
+ )
39
+
40
+ if TYPE_CHECKING:
41
+ shift_types: models.QuerySet["ShiftType"]
42
+ required_qualifications: models.QuerySet["Qualification"]
43
+ center_shifts: models.QuerySet["CenterShift"]
44
+
45
+ objects = ShiftManager()
46
+
47
+ def __str__(self):
48
+ """
49
+ Returns the string representation of the shift using its name.
50
+ """
51
+ return str(self.name)
@@ -0,0 +1,108 @@
1
+ import logging # Added import
2
+ from django.db import models
3
+ from typing import TYPE_CHECKING
4
+
5
+ if TYPE_CHECKING:
6
+ from endoreg_db.models import Shift
7
+
8
+ # Those are defined in our base data
9
+ NAME_REGULAR = "regular"
10
+ NAME_ON_CALL = "on_call"
11
+ NAME_WARD = "ward"
12
+ NAME_OFF_HOURS = "off_hours"
13
+
14
+ logger = logging.getLogger(__name__) # Added logger
15
+
16
+ class ShiftTypeManager(models.Manager):
17
+ def get_queryset(self):
18
+ """
19
+ Returns a queryset containing only active shift types.
20
+ """
21
+ return super().get_queryset().filter(is_active=True)
22
+
23
+ class ShiftType(models.Model):
24
+ """
25
+ Model representing a Shift type.
26
+ """
27
+ name = models.CharField(max_length=255, unique=True)
28
+ description = models.TextField(blank=True, null=True)
29
+ is_active = models.BooleanField(default=True)
30
+
31
+ objects = ShiftTypeManager()
32
+
33
+ if TYPE_CHECKING:
34
+ shift: models.QuerySet["Shift"]
35
+
36
+ def __str__(self):
37
+ """
38
+ Returns the name of the shift type as its string representation.
39
+ """
40
+ return str(self.name)
41
+
42
+ @classmethod
43
+ def get_type_regular(cls) -> "ShiftType | None": # Modified return type
44
+ """
45
+ Retrieves the 'regular' shift type instance.
46
+
47
+ Returns:
48
+ The ShiftType instance with the name 'regular', or None if it does not exist.
49
+ """
50
+ try:
51
+ return cls.objects.get(name=NAME_REGULAR)
52
+ except cls.DoesNotExist:
53
+ logger.error(
54
+ f"ShiftType with name '{NAME_REGULAR}' does not exist. "
55
+ "Base data might be missing."
56
+ )
57
+ return None
58
+
59
+ @classmethod
60
+ def get_type_on_call(cls) -> "ShiftType | None": # Modified return type
61
+ """
62
+ Retrieves the ShiftType instance representing the on-call shift type.
63
+
64
+ Returns:
65
+ The ShiftType instance with the on-call name, or None if it does not exist.
66
+ """
67
+ try:
68
+ return cls.objects.get(name=NAME_ON_CALL)
69
+ except cls.DoesNotExist:
70
+ logger.error(
71
+ f"ShiftType with name '{NAME_ON_CALL}' does not exist. "
72
+ "Base data might be missing."
73
+ )
74
+ return None
75
+
76
+ @classmethod
77
+ def get_type_ward(cls) -> "ShiftType | None": # Modified return type
78
+ """
79
+ Retrieves the ShiftType instance representing a ward shift.
80
+
81
+ Returns:
82
+ The ShiftType instance with the name corresponding to a ward shift, or None if it does not exist.
83
+ """
84
+ try:
85
+ return cls.objects.get(name=NAME_WARD)
86
+ except cls.DoesNotExist:
87
+ logger.error(
88
+ f"ShiftType with name '{NAME_WARD}' does not exist. "
89
+ "Base data might be missing."
90
+ )
91
+ return None
92
+
93
+ @classmethod
94
+ def get_type_off_hours(cls) -> "ShiftType | None": # Modified return type
95
+ """
96
+ Retrieves the off-hours shift type instance by name.
97
+
98
+ Returns:
99
+ The ShiftType instance for off-hours if it exists, otherwise None.
100
+ """
101
+ try:
102
+ return cls.objects.get(name=NAME_OFF_HOURS)
103
+ except cls.DoesNotExist:
104
+ logger.error(
105
+ f"ShiftType with name '{NAME_OFF_HOURS}' does not exist. "
106
+ "Base data might be missing."
107
+ )
108
+ return None
@@ -0,0 +1,24 @@
1
+ from .label import Label
2
+ from .label_set import LabelSet
3
+ from .label_type import LabelType
4
+ from .video_segmentation_label import VideoSegmentationLabel
5
+ from .video_segmentation_labelset import VideoSegmentationLabelSet
6
+ from .label_video_segment import (
7
+ LabelVideoSegment,
8
+ )
9
+
10
+ from .annotation import (
11
+ ImageClassificationAnnotation,
12
+ VideoSegmentationAnnotation,
13
+ )
14
+
15
+ __all__ = [
16
+ "Label",
17
+ "LabelSet",
18
+ "LabelType",
19
+ "VideoSegmentationLabel",
20
+ "VideoSegmentationLabelSet",
21
+ "LabelVideoSegment",
22
+ "ImageClassificationAnnotation",
23
+ "VideoSegmentationAnnotation",
24
+ ]
@@ -0,0 +1,12 @@
1
+ """Module for annotation models"""
2
+
3
+ from .image_classification import ImageClassificationAnnotation
4
+
5
+ from .video_segmentation_annotation import (
6
+ VideoSegmentationAnnotation,
7
+ )
8
+
9
+ __all__ = [
10
+ "ImageClassificationAnnotation",
11
+ "VideoSegmentationAnnotation",
12
+ ]