endoreg-db 0.8.6.4__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/admin.py +92 -0
  3. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  4. endoreg_db/api/views/finding_descriptions.py +0 -0
  5. endoreg_db/api_urls.py +4 -0
  6. endoreg_db/apps.py +18 -0
  7. endoreg_db/assets/dummy_model.ckpt +1 -0
  8. endoreg_db/codemods/readme.md +88 -0
  9. endoreg_db/codemods/rename_datetime_fields.py +92 -0
  10. endoreg_db/config/__init__.py +0 -0
  11. endoreg_db/config/env.py +101 -0
  12. endoreg_db/data/__init__.py +144 -0
  13. endoreg_db/data/ai_model/data.yaml +7 -0
  14. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  15. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  16. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  17. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  18. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  19. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  20. endoreg_db/data/ai_model_type/data.yaml +7 -0
  21. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  22. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  23. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  24. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  25. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  26. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  27. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  28. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  29. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  30. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  31. endoreg_db/data/case_template/rule_value/.init +0 -0
  32. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  33. endoreg_db/data/case_template/template/base.yaml +8 -0
  34. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  35. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  36. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  37. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  38. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  39. endoreg_db/data/center/data.yaml +91 -0
  40. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  41. endoreg_db/data/center_shift/ukw.yaml +9 -0
  42. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  43. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  44. endoreg_db/data/db_summary.csv +58 -0
  45. endoreg_db/data/db_summary.xlsx +0 -0
  46. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  47. endoreg_db/data/disease/hepatology.yaml +5 -0
  48. endoreg_db/data/disease/misc.yaml +5 -0
  49. endoreg_db/data/disease/renal.yaml +5 -0
  50. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  51. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  52. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  53. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  54. endoreg_db/data/distribution/date/patient.yaml +7 -0
  55. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  56. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  57. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  58. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  59. endoreg_db/data/endoscope/data.yaml +93 -0
  60. endoreg_db/data/endoscope_type/data.yaml +11 -0
  61. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  62. endoreg_db/data/event/cardiology.yaml +15 -0
  63. endoreg_db/data/event/neurology.yaml +14 -0
  64. endoreg_db/data/event/surgery.yaml +13 -0
  65. endoreg_db/data/event/thrombembolism.yaml +20 -0
  66. endoreg_db/data/examination/examinations/data.yaml +72 -0
  67. endoreg_db/data/examination/time/data.yaml +48 -0
  68. endoreg_db/data/examination/time-type/data.yaml +8 -0
  69. endoreg_db/data/examination/type/data.yaml +17 -0
  70. endoreg_db/data/examination_indication/endoscopy.yaml +424 -0
  71. endoreg_db/data/examination_indication_classification/endoscopy.yaml +160 -0
  72. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
  73. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  74. endoreg_db/data/finding/anatomy_colon.yaml +128 -0
  75. endoreg_db/data/finding/colonoscopy.yaml +40 -0
  76. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
  77. endoreg_db/data/finding/complication.yaml +16 -0
  78. endoreg_db/data/finding/data.yaml +105 -0
  79. endoreg_db/data/finding/examination_setting.yaml +16 -0
  80. endoreg_db/data/finding/medication_related.yaml +18 -0
  81. endoreg_db/data/finding/outcome.yaml +12 -0
  82. endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
  83. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
  84. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
  85. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
  86. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
  87. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
  88. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
  89. endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
  90. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
  91. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
  92. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
  93. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
  94. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
  95. endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
  96. endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
  97. endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
  98. endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
  99. endoreg_db/data/finding_classification/medication_related.yaml +23 -0
  100. endoreg_db/data/finding_classification/visualized.yaml +33 -0
  101. endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
  102. endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
  103. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
  104. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
  105. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
  106. endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +17 -0
  107. endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +57 -0
  108. endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
  109. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
  110. endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
  111. endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +229 -0
  112. endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
  114. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
  115. endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
  116. endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
  117. endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
  118. endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
  119. endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
  120. endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
  121. endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
  122. endoreg_db/data/finding_intervention/endoscopy.yaml +43 -0
  123. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
  124. endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
  125. endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
  126. endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
  127. endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
  128. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  129. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
  130. endoreg_db/data/finding_type/data.yaml +43 -0
  131. endoreg_db/data/gender/data.yaml +42 -0
  132. endoreg_db/data/information_source/annotation.yaml +6 -0
  133. endoreg_db/data/information_source/data.yaml +30 -0
  134. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  135. endoreg_db/data/information_source/medication.yaml +6 -0
  136. endoreg_db/data/information_source/prediction.yaml +7 -0
  137. endoreg_db/data/information_source_type/data.yaml +8 -0
  138. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  139. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  140. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  141. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  142. endoreg_db/data/lab_value/hematology.yaml +184 -0
  143. endoreg_db/data/lab_value/hormones.yaml +59 -0
  144. endoreg_db/data/lab_value/lipids.yaml +53 -0
  145. endoreg_db/data/lab_value/misc.yaml +76 -0
  146. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  147. endoreg_db/data/log_type/data.yaml +57 -0
  148. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  149. endoreg_db/data/lx_client_type/base.yaml +30 -0
  150. endoreg_db/data/lx_permission/base.yaml +24 -0
  151. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  152. endoreg_db/data/material/material.yaml +91 -0
  153. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  154. endoreg_db/data/medication/tah.yaml +70 -0
  155. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  156. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  157. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  158. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  159. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  160. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  161. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  162. endoreg_db/data/names_first/first_names.yaml +54 -0
  163. endoreg_db/data/names_last/last_names.yaml +51 -0
  164. endoreg_db/data/network_device/data.yaml +59 -0
  165. endoreg_db/data/network_device_type/data.yaml +12 -0
  166. endoreg_db/data/organ/data.yaml +29 -0
  167. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  168. endoreg_db/data/pdf_type/data.yaml +46 -0
  169. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  170. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  171. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  172. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  173. endoreg_db/data/profession/data.yaml +70 -0
  174. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  175. endoreg_db/data/qualification/m2.yaml +39 -0
  176. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  177. endoreg_db/data/qualification/sonography.yaml +36 -0
  178. endoreg_db/data/qualification_type/base.yaml +29 -0
  179. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  180. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  181. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  182. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  183. endoreg_db/data/requirement/age.yaml +26 -0
  184. endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
  185. endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
  186. endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
  187. endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
  188. endoreg_db/data/requirement/disease_misc.yaml +12 -0
  189. endoreg_db/data/requirement/disease_renal.yaml +96 -0
  190. endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
  191. endoreg_db/data/requirement/event_cardiology.yaml +251 -0
  192. endoreg_db/data/requirement/event_requirements.yaml +145 -0
  193. endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
  194. endoreg_db/data/requirement/gender.yaml +25 -0
  195. endoreg_db/data/requirement/lab_value.yaml +441 -0
  196. endoreg_db/data/requirement/medication.yaml +93 -0
  197. endoreg_db/data/requirement_operator/age.yaml +13 -0
  198. endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
  199. endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
  200. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
  201. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  202. endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
  203. endoreg_db/data/requirement_set_type/data.yaml +20 -0
  204. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  205. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  206. endoreg_db/data/risk/bleeding.yaml +26 -0
  207. endoreg_db/data/risk/thrombosis.yaml +37 -0
  208. endoreg_db/data/risk_type/data.yaml +27 -0
  209. endoreg_db/data/setup_config.yaml +38 -0
  210. endoreg_db/data/shift/endoscopy.yaml +21 -0
  211. endoreg_db/data/shift/m2.yaml +0 -0
  212. endoreg_db/data/shift_type/base.yaml +35 -0
  213. endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
  214. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  215. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  216. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  217. endoreg_db/data/unit/concentration.yaml +115 -0
  218. endoreg_db/data/unit/data.yaml +17 -0
  219. endoreg_db/data/unit/length.yaml +31 -0
  220. endoreg_db/data/unit/misc.yaml +20 -0
  221. endoreg_db/data/unit/rate.yaml +6 -0
  222. endoreg_db/data/unit/time.yaml +48 -0
  223. endoreg_db/data/unit/volume.yaml +35 -0
  224. endoreg_db/data/unit/weight.yaml +38 -0
  225. endoreg_db/data/waste/data.yaml +12 -0
  226. endoreg_db/exceptions.py +19 -0
  227. endoreg_db/factories/__init__.py +0 -0
  228. endoreg_db/forms/__init__.py +5 -0
  229. endoreg_db/forms/examination_form.py +11 -0
  230. endoreg_db/forms/patient_finding_intervention_form.py +18 -0
  231. endoreg_db/forms/patient_form.py +27 -0
  232. endoreg_db/forms/questionnaires/__init__.py +1 -0
  233. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  234. endoreg_db/forms/settings/__init__.py +8 -0
  235. endoreg_db/forms/unit.py +6 -0
  236. endoreg_db/helpers/__init__.py +0 -0
  237. endoreg_db/helpers/count_db.py +45 -0
  238. endoreg_db/helpers/data_loader.py +208 -0
  239. endoreg_db/helpers/default_objects.py +378 -0
  240. endoreg_db/helpers/download_segmentation_model.py +31 -0
  241. endoreg_db/helpers/interact.py +6 -0
  242. endoreg_db/helpers/test_video_helper.py +119 -0
  243. endoreg_db/logger_conf.py +140 -0
  244. endoreg_db/management/__init__.py +1 -0
  245. endoreg_db/management/commands/__init__.py +1 -0
  246. endoreg_db/management/commands/anonymize_video.py +0 -0
  247. endoreg_db/management/commands/check_auth.py +125 -0
  248. endoreg_db/management/commands/create_model_meta_from_huggingface.py +115 -0
  249. endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
  250. endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
  251. endoreg_db/management/commands/fix_video_paths.py +165 -0
  252. endoreg_db/management/commands/import_fallback_video.py +203 -0
  253. endoreg_db/management/commands/import_report.py +298 -0
  254. endoreg_db/management/commands/import_video.py +423 -0
  255. endoreg_db/management/commands/import_video_with_classification.py +367 -0
  256. endoreg_db/management/commands/init_default_ai_model.py +112 -0
  257. endoreg_db/management/commands/load_ai_model_data.py +77 -0
  258. endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
  259. endoreg_db/management/commands/load_base_db_data.py +192 -0
  260. endoreg_db/management/commands/load_center_data.py +68 -0
  261. endoreg_db/management/commands/load_contraindication_data.py +41 -0
  262. endoreg_db/management/commands/load_disease_classification_choices_data.py +41 -0
  263. endoreg_db/management/commands/load_disease_classification_data.py +41 -0
  264. endoreg_db/management/commands/load_disease_data.py +62 -0
  265. endoreg_db/management/commands/load_distribution_data.py +66 -0
  266. endoreg_db/management/commands/load_endoscope_data.py +68 -0
  267. endoreg_db/management/commands/load_event_data.py +41 -0
  268. endoreg_db/management/commands/load_examination_data.py +75 -0
  269. endoreg_db/management/commands/load_examination_indication_data.py +86 -0
  270. endoreg_db/management/commands/load_finding_data.py +128 -0
  271. endoreg_db/management/commands/load_gender_data.py +44 -0
  272. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -0
  273. endoreg_db/management/commands/load_information_source.py +51 -0
  274. endoreg_db/management/commands/load_lab_value_data.py +50 -0
  275. endoreg_db/management/commands/load_medication_data.py +103 -0
  276. endoreg_db/management/commands/load_name_data.py +37 -0
  277. endoreg_db/management/commands/load_organ_data.py +43 -0
  278. endoreg_db/management/commands/load_pdf_type_data.py +61 -0
  279. endoreg_db/management/commands/load_profession_data.py +44 -0
  280. endoreg_db/management/commands/load_qualification_data.py +59 -0
  281. endoreg_db/management/commands/load_report_reader_flag_data.py +46 -0
  282. endoreg_db/management/commands/load_requirement_data.py +180 -0
  283. endoreg_db/management/commands/load_risk_data.py +56 -0
  284. endoreg_db/management/commands/load_shift_data.py +60 -0
  285. endoreg_db/management/commands/load_tag_data.py +57 -0
  286. endoreg_db/management/commands/load_unit_data.py +46 -0
  287. endoreg_db/management/commands/load_user_groups.py +28 -0
  288. endoreg_db/management/commands/register_ai_model.py +64 -0
  289. endoreg_db/management/commands/reset_celery_schedule.py +9 -0
  290. endoreg_db/management/commands/setup_endoreg_db.py +381 -0
  291. endoreg_db/management/commands/start_filewatcher.py +106 -0
  292. endoreg_db/management/commands/storage_management.py +548 -0
  293. endoreg_db/management/commands/summarize_db_content.py +189 -0
  294. endoreg_db/management/commands/validate_video.py +204 -0
  295. endoreg_db/management/commands/validate_video_files.py +161 -0
  296. endoreg_db/management/commands/video_validation.py +22 -0
  297. endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
  298. endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
  299. endoreg_db/mermaid/binary_classification_annotation.md +50 -0
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  607. endoreg_db/tasks/video_ingest.py +157 -0
  608. endoreg_db/tasks/video_processing_tasks.py +327 -0
  609. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  610. endoreg_db/templates/admin/start_examination.html +12 -0
  611. endoreg_db/templates/timeline.html +176 -0
  612. endoreg_db/urls/__init__.py +83 -0
  613. endoreg_db/urls/anonymization.py +32 -0
  614. endoreg_db/urls/auth.py +16 -0
  615. endoreg_db/urls/classification.py +39 -0
  616. endoreg_db/urls/examination.py +54 -0
  617. endoreg_db/urls/files.py +6 -0
  618. endoreg_db/urls/label_video_segment_validate.py +33 -0
  619. endoreg_db/urls/label_video_segments.py +46 -0
  620. endoreg_db/urls/media.py +227 -0
  621. endoreg_db/urls/patient.py +19 -0
  622. endoreg_db/urls/report.py +48 -0
  623. endoreg_db/urls/requirements.py +13 -0
  624. endoreg_db/urls/sensitive_meta.py +0 -0
  625. endoreg_db/urls/stats.py +46 -0
  626. endoreg_db/urls/upload.py +20 -0
  627. endoreg_db/urls/video.py +61 -0
  628. endoreg_db/urls.py +9 -0
  629. endoreg_db/utils/__init__.py +88 -0
  630. endoreg_db/utils/ai/__init__.py +9 -0
  631. endoreg_db/utils/ai/get.py +5 -0
  632. endoreg_db/utils/ai/inference_dataset.py +52 -0
  633. endoreg_db/utils/ai/multilabel_classification_net.py +159 -0
  634. endoreg_db/utils/ai/postprocess.py +63 -0
  635. endoreg_db/utils/ai/predict.py +291 -0
  636. endoreg_db/utils/ai/preprocess.py +68 -0
  637. endoreg_db/utils/calc_duration_seconds.py +24 -0
  638. endoreg_db/utils/case_generator/__init__.py +0 -0
  639. endoreg_db/utils/case_generator/case_generator.py +159 -0
  640. endoreg_db/utils/case_generator/lab_sample_factory.py +33 -0
  641. endoreg_db/utils/case_generator/utils.py +30 -0
  642. endoreg_db/utils/check_video_files.py +148 -0
  643. endoreg_db/utils/cropping.py +29 -0
  644. endoreg_db/utils/dataloader.py +175 -0
  645. endoreg_db/utils/dates.py +60 -0
  646. endoreg_db/utils/env.py +33 -0
  647. endoreg_db/utils/extract_specific_frames.py +72 -0
  648. endoreg_db/utils/file_operations.py +58 -0
  649. endoreg_db/utils/fix_video_path_direct.py +141 -0
  650. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  651. endoreg_db/utils/hashs.py +153 -0
  652. endoreg_db/utils/links/__init__.py +0 -0
  653. endoreg_db/utils/links/requirement_link.py +193 -0
  654. endoreg_db/utils/mime_types.py +0 -0
  655. endoreg_db/utils/names.py +76 -0
  656. endoreg_db/utils/ocr.py +190 -0
  657. endoreg_db/utils/parse_and_generate_yaml.py +46 -0
  658. endoreg_db/utils/paths.py +95 -0
  659. endoreg_db/utils/permissions.py +143 -0
  660. endoreg_db/utils/pipelines/Readme.md +235 -0
  661. endoreg_db/utils/pipelines/__init__.py +0 -0
  662. endoreg_db/utils/pipelines/process_video_dir.py +120 -0
  663. endoreg_db/utils/product/__init__.py +0 -0
  664. endoreg_db/utils/product/sum_emissions.py +20 -0
  665. endoreg_db/utils/product/sum_weights.py +18 -0
  666. endoreg_db/utils/pydantic_models/__init__.py +6 -0
  667. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  668. endoreg_db/utils/requirement_helpers.py +0 -0
  669. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  670. endoreg_db/utils/requirement_operator_logic/lab_value_operators.py +578 -0
  671. endoreg_db/utils/requirement_operator_logic/model_evaluators.py +368 -0
  672. endoreg_db/utils/setup_config.py +177 -0
  673. endoreg_db/utils/translation.py +27 -0
  674. endoreg_db/utils/uuid.py +4 -0
  675. endoreg_db/utils/validate_endo_roi.py +19 -0
  676. endoreg_db/utils/validate_subcategory_dict.py +91 -0
  677. endoreg_db/utils/validate_video_detailed.py +357 -0
  678. endoreg_db/utils/video/__init__.py +26 -0
  679. endoreg_db/utils/video/extract_frames.py +88 -0
  680. endoreg_db/utils/video/ffmpeg_wrapper.py +835 -0
  681. endoreg_db/utils/video/names.py +42 -0
  682. endoreg_db/utils/video/streaming_processor.py +312 -0
  683. endoreg_db/utils/video/video_splitter.py +94 -0
  684. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +238 -0
  685. endoreg_db/views/__init__.py +274 -0
  686. endoreg_db/views/anonymization/__init__.py +27 -0
  687. endoreg_db/views/anonymization/media_management.py +454 -0
  688. endoreg_db/views/anonymization/overview.py +216 -0
  689. endoreg_db/views/anonymization/validate.py +107 -0
  690. endoreg_db/views/auth/__init__.py +13 -0
  691. endoreg_db/views/auth/keycloak.py +113 -0
  692. endoreg_db/views/examination/__init__.py +33 -0
  693. endoreg_db/views/examination/examination.py +37 -0
  694. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  695. endoreg_db/views/examination/get_finding_classification_choices.py +59 -0
  696. endoreg_db/views/examination/get_finding_classifications.py +36 -0
  697. endoreg_db/views/examination/get_findings.py +41 -0
  698. endoreg_db/views/examination/get_instruments.py +18 -0
  699. endoreg_db/views/examination/get_interventions.py +14 -0
  700. endoreg_db/views/finding/__init__.py +9 -0
  701. endoreg_db/views/finding/finding.py +112 -0
  702. endoreg_db/views/finding/get_classifications.py +14 -0
  703. endoreg_db/views/finding/get_interventions.py +17 -0
  704. endoreg_db/views/finding_classification/__init__.py +13 -0
  705. endoreg_db/views/finding_classification/base.py +0 -0
  706. endoreg_db/views/finding_classification/finding_classification.py +42 -0
  707. endoreg_db/views/finding_classification/get_classification_choices.py +55 -0
  708. endoreg_db/views/label/__init__.py +5 -0
  709. endoreg_db/views/label/label.py +15 -0
  710. endoreg_db/views/label_video_segment/__init__.py +16 -0
  711. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +44 -0
  712. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +50 -0
  713. endoreg_db/views/label_video_segment/label_video_segment.py +77 -0
  714. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +174 -0
  715. endoreg_db/views/label_video_segment/label_video_segment_detail.py +73 -0
  716. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +46 -0
  717. endoreg_db/views/label_video_segment/validate.py +226 -0
  718. endoreg_db/views/media/__init__.py +45 -0
  719. endoreg_db/views/media/pdf_media.py +388 -0
  720. endoreg_db/views/media/segments.py +71 -0
  721. endoreg_db/views/media/sensitive_metadata.py +314 -0
  722. endoreg_db/views/media/video_media.py +272 -0
  723. endoreg_db/views/media/video_segments.py +524 -0
  724. endoreg_db/views/meta/__init__.py +15 -0
  725. endoreg_db/views/meta/available_files_list.py +146 -0
  726. endoreg_db/views/meta/report_meta.py +53 -0
  727. endoreg_db/views/meta/sensitive_meta_detail.py +148 -0
  728. endoreg_db/views/meta/sensitive_meta_list.py +104 -0
  729. endoreg_db/views/meta/sensitive_meta_verification.py +71 -0
  730. endoreg_db/views/misc/__init__.py +63 -0
  731. endoreg_db/views/misc/center.py +13 -0
  732. endoreg_db/views/misc/csrf.py +7 -0
  733. endoreg_db/views/misc/gender.py +14 -0
  734. endoreg_db/views/misc/secure_file_serving_view.py +80 -0
  735. endoreg_db/views/misc/secure_file_url_view.py +84 -0
  736. endoreg_db/views/misc/secure_url_validate.py +79 -0
  737. endoreg_db/views/misc/stats.py +220 -0
  738. endoreg_db/views/misc/translation.py +182 -0
  739. endoreg_db/views/misc/upload_views.py +240 -0
  740. endoreg_db/views/patient/__init__.py +5 -0
  741. endoreg_db/views/patient/patient.py +210 -0
  742. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +164 -0
  743. endoreg_db/views/patient_examination/__init__.py +11 -0
  744. endoreg_db/views/patient_examination/patient_examination.py +140 -0
  745. endoreg_db/views/patient_examination/patient_examination_create.py +63 -0
  746. endoreg_db/views/patient_examination/patient_examination_detail.py +66 -0
  747. endoreg_db/views/patient_examination/patient_examination_list.py +68 -0
  748. endoreg_db/views/patient_examination/video.py +194 -0
  749. endoreg_db/views/patient_finding/__init__.py +7 -0
  750. endoreg_db/views/patient_finding/base.py +0 -0
  751. endoreg_db/views/patient_finding/patient_finding.py +64 -0
  752. endoreg_db/views/patient_finding/patient_finding_optimized.py +259 -0
  753. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  754. endoreg_db/views/patient_finding_classification/pfc_create.py +67 -0
  755. endoreg_db/views/patient_finding_location/__init__.py +5 -0
  756. endoreg_db/views/patient_finding_location/pfl_create.py +70 -0
  757. endoreg_db/views/patient_finding_morphology/__init__.py +5 -0
  758. endoreg_db/views/patient_finding_morphology/pfm_create.py +70 -0
  759. endoreg_db/views/pdf/__init__.py +8 -0
  760. endoreg_db/views/pdf/pdf_stream.py +186 -0
  761. endoreg_db/views/pdf/reimport.py +177 -0
  762. endoreg_db/views/report/__init__.py +9 -0
  763. endoreg_db/views/report/report_list.py +112 -0
  764. endoreg_db/views/report/report_with_secure_url.py +28 -0
  765. endoreg_db/views/report/start_examination.py +7 -0
  766. endoreg_db/views/requirement/__init__.py +10 -0
  767. endoreg_db/views/requirement/evaluate.py +279 -0
  768. endoreg_db/views/requirement/lookup.py +367 -0
  769. endoreg_db/views/requirement/lookup_store.py +252 -0
  770. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  771. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  772. endoreg_db/views/stats/__init__.py +13 -0
  773. endoreg_db/views/stats/stats_views.py +229 -0
  774. endoreg_db/views/video/__init__.py +59 -0
  775. endoreg_db/views/video/correction.py +530 -0
  776. endoreg_db/views/video/reimport.py +195 -0
  777. endoreg_db/views/video/segmentation.py +274 -0
  778. endoreg_db/views/video/task_status.py +49 -0
  779. endoreg_db/views/video/timeline.py +46 -0
  780. endoreg_db/views/video/video_analyze.py +52 -0
  781. endoreg_db/views/video/video_apply_mask.py +48 -0
  782. endoreg_db/views/video/video_correction.py +21 -0
  783. endoreg_db/views/video/video_download_processed.py +58 -0
  784. endoreg_db/views/video/video_examination_viewset.py +242 -0
  785. endoreg_db/views/video/video_meta.py +29 -0
  786. endoreg_db/views/video/video_processing_history.py +24 -0
  787. endoreg_db/views/video/video_remove_frames.py +48 -0
  788. endoreg_db/views/video/video_stream.py +306 -0
  789. endoreg_db/views.py +0 -0
  790. endoreg_db-0.8.6.4.dist-info/METADATA +383 -0
  791. endoreg_db-0.8.6.4.dist-info/RECORD +793 -0
  792. endoreg_db-0.8.6.4.dist-info/WHEEL +4 -0
  793. endoreg_db-0.8.6.4.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,530 @@
1
+ """
2
+ Video Correction API Views
3
+
4
+ Provides endpoints for video analysis, masking, frame removal, and processing history.
5
+ Created as part of Phase 1.1: Video Correction API Endpoints.
6
+
7
+ Available Functions from lx_anonymizer (already implemented):
8
+ - FrameCleaner.analyze_video_sensitivity() - Frame analysis
9
+ - FrameCleaner.clean_video() - Complete anonymization
10
+ - FrameCleaner._mask_video() - FFmpeg masking
11
+ - FrameCleaner.remove_frames_from_video() - Frame removal
12
+ - VideoImportService._get_processor_roi_info() - ROI extraction
13
+ """
14
+ from rest_framework.views import APIView
15
+ from rest_framework.response import Response
16
+ from rest_framework import status
17
+ from django.shortcuts import get_object_or_404
18
+ from django.conf import settings
19
+ from pathlib import Path
20
+ import json
21
+ import logging
22
+
23
+ from endoreg_db.models import VideoFile, VideoMetadata, VideoProcessingHistory, LabelVideoSegment
24
+ from endoreg_db.serializers import VideoMetadataSerializer, VideoProcessingHistorySerializer
25
+ from lx_anonymizer import FrameCleaner
26
+
27
+ from endoreg_db.models import VideoFile
28
+ from endoreg_db.serializers.video.video_file_detail import VideoDetailSerializer
29
+ from endoreg_db.utils.permissions import EnvironmentAwarePermission
30
+
31
+ logger = logging.getLogger(__name__)
32
+
33
+ def update_processed_file(video, output_path: Path):
34
+ from endoreg_db.utils import data_paths
35
+ storage_root = Path(data_paths["storage"])
36
+ try:
37
+ rel_path = output_path.relative_to(storage_root)
38
+ except ValueError:
39
+ rel_path = output_path.relative_to(Path(settings.MEDIA_ROOT))
40
+ video.processed_file.name = str(rel_path)
41
+ video.save(update_fields=["processed_file"])
42
+
43
+
44
+ class VideoCorrectionView(APIView):
45
+ """
46
+ GET /api/video/media/video-correction/{id}/ - Get video details for correction
47
+ """
48
+ permission_classes = [EnvironmentAwarePermission]
49
+
50
+ def get(self, request, pk):
51
+ video = get_object_or_404(VideoFile, pk=pk)
52
+ ser = VideoDetailSerializer(video, context={"request": request})
53
+ return Response(ser.data, status=status.HTTP_200_OK)
54
+
55
+ def update_segments_after_frame_removal(video: VideoFile, removed_frames: list) -> dict:
56
+ """
57
+ Update LabelVideoSegment frame boundaries after frame removal.
58
+
59
+ This function shifts segment start/end frames based on which frames were removed.
60
+ Segments are deleted if all their frames are removed.
61
+
62
+ Args:
63
+ video: VideoFile instance whose segments should be updated
64
+ removed_frames: List of frame numbers that were removed (sorted)
65
+
66
+ Returns:
67
+ dict: {
68
+ 'segments_updated': int,
69
+ 'segments_deleted': int,
70
+ 'segments_unchanged': int
71
+ }
72
+
73
+ Algorithm:
74
+ For each segment:
75
+ 1. Count frames removed before segment → shift start_frame
76
+ 2. Count frames removed within segment → shift end_frame
77
+ 3. Delete segment if start_frame >= end_frame (all frames removed)
78
+
79
+ Example:
80
+ Original segment: frames 100-200
81
+ Removed frames: [50, 75, 120, 150, 180]
82
+
83
+ Frames before segment (< 100): 2 frames (50, 75)
84
+ Frames within segment (100-200): 3 frames (120, 150, 180)
85
+
86
+ New segment: frames (100-2) to (200-2-3) = 98-195
87
+ """
88
+ if not removed_frames:
89
+ return {'segments_updated': 0, 'segments_deleted': 0, 'segments_unchanged': 0}
90
+
91
+ removed_frames = sorted(set(removed_frames)) # Ensure sorted and unique
92
+ segments = LabelVideoSegment.objects.filter(
93
+ video_file=video
94
+ ).order_by('start_frame_number')
95
+
96
+ segments_updated = 0
97
+ segments_deleted = 0
98
+ segments_unchanged = 0
99
+
100
+ for segment in segments:
101
+ original_start = segment.start_frame_number
102
+ original_end = segment.end_frame_number
103
+
104
+ # Count frames removed before this segment
105
+ frames_before = sum(1 for f in removed_frames if f < original_start)
106
+
107
+ # Count frames removed within this segment
108
+ frames_within = sum(1 for f in removed_frames if original_start <= f <= original_end)
109
+
110
+ # Calculate new boundaries
111
+ new_start = original_start - frames_before
112
+ new_end = original_end - frames_before - frames_within
113
+
114
+ # Delete segment if all frames were removed
115
+ if new_start >= new_end:
116
+ logger.info(
117
+ f"Deleting segment {segment.id} (original: {original_start}-{original_end}) "
118
+ f"- all {frames_within} frames removed"
119
+ )
120
+ segment.delete()
121
+ segments_deleted += 1
122
+ elif new_start != original_start or new_end != original_end:
123
+ # Update segment boundaries
124
+ logger.info(
125
+ f"Updating segment {segment.id}: "
126
+ f"{original_start}-{original_end} → {new_start}-{new_end} "
127
+ f"(before: {frames_before}, within: {frames_within})"
128
+ )
129
+ segment.start_frame_number = new_start
130
+ segment.end_frame_number = new_end
131
+ segment.save(update_fields=["start_frame_number", "end_frame_number"])
132
+ segments_updated += 1
133
+ else:
134
+ # No change needed
135
+ segments_unchanged += 1
136
+
137
+ logger.info(
138
+ f"Segment update complete for video {video.id}: "
139
+ f"{segments_updated} updated, {segments_deleted} deleted, {segments_unchanged} unchanged"
140
+ )
141
+
142
+ return {
143
+ 'segments_updated': segments_updated,
144
+ 'segments_deleted': segments_deleted,
145
+ 'segments_unchanged': segments_unchanged
146
+ }
147
+
148
+
149
+ class VideoMetadataView(APIView):
150
+ """
151
+ GET /api/media/videos/{pk}/metadata/
152
+
153
+ Retrieve analysis results for a video.
154
+
155
+ Returns:
156
+ {
157
+ "id": 1,
158
+ "video": 123,
159
+ "sensitive_frame_count": 42,
160
+ "sensitive_ratio": 0.05,
161
+ "sensitive_frame_ids": "[10, 15, 20, ...]",
162
+ "sensitive_frame_ids_list": [10, 15, 20, ...],
163
+ "sensitive_percentage": 5.0,
164
+ "has_analysis": true,
165
+ "analyzed_at": "2025-10-09T10:00:00Z"
166
+ }
167
+ """
168
+
169
+ def get(self, request, pk):
170
+ """Get video metadata by video ID."""
171
+ video = get_object_or_404(VideoFile, pk=pk)
172
+
173
+ # Get or create metadata record
174
+ metadata, created = VideoMetadata.objects.get_or_create(video=video)
175
+
176
+ serializer = VideoMetadataSerializer(metadata, context={'request': request})
177
+ return Response(serializer.data)
178
+
179
+
180
+ class VideoProcessingHistoryView(APIView):
181
+ """
182
+ GET /api/media/videos/{pk}/processing-history/
183
+
184
+ Retrieve processing history for a video.
185
+
186
+ Returns list of processing operations:
187
+ [
188
+ {
189
+ "id": 1,
190
+ "video": 123,
191
+ "operation": "mask_overlay",
192
+ "operation_display": "Mask Overlay",
193
+ "status": "success",
194
+ "status_display": "Success",
195
+ "config": {"mask_type": "device", "device_name": "olympus"},
196
+ "output_file": "/path/to/masked_video.mp4",
197
+ "download_url": "/api/media/processed-videos/123/1/",
198
+ "details": "",
199
+ "task_id": "abc-123-def",
200
+ "created_at": "2025-10-09T10:00:00Z",
201
+ "completed_at": "2025-10-09T10:05:00Z",
202
+ "duration": 300.5,
203
+ "is_complete": true
204
+ },
205
+ ...
206
+ ]
207
+ """
208
+
209
+ def get(self, request, pk):
210
+ """Get processing history for a video."""
211
+ video = get_object_or_404(VideoFile, pk=pk)
212
+
213
+ # Get all history records, newest first
214
+ history = VideoProcessingHistory.objects.filter(
215
+ video=video
216
+ ).order_by('-created_at')
217
+
218
+ serializer = VideoProcessingHistorySerializer(
219
+ history,
220
+ many=True,
221
+ context={'request': request}
222
+ )
223
+ return Response(serializer.data)
224
+
225
+
226
+ class VideoApplyMaskView(APIView):
227
+ """
228
+ POST /api/media/videos/{pk}/apply-mask/
229
+
230
+ Apply device mask or custom ROI mask to video.
231
+
232
+ Request body:
233
+ {
234
+ "mask_type": "device", // or "custom"
235
+ "device_name": "olympus", // required if mask_type=device
236
+ "roi": { // required if mask_type=custom
237
+ "x": 550,
238
+ "y": 0,
239
+ "width": 1350,
240
+ "height": 1080
241
+ },
242
+ "processing_method": "streaming" // or "direct" (default: streaming)
243
+ }
244
+
245
+ Returns:
246
+ {
247
+ "task_id": "abc-123-def", // Celery task ID (future)
248
+ "output_file": "/path/to/masked_video.mp4",
249
+ "message": "Masking complete",
250
+ "processing_time": 125.5
251
+ }
252
+
253
+ Note: Currently synchronous. Will be converted to Celery task in Phase 1.2.
254
+ """
255
+
256
+ def post(self, request, pk):
257
+ """Apply masking to video."""
258
+ video = get_object_or_404(VideoFile, pk=pk)
259
+
260
+ # Extract parameters
261
+ mask_type = request.data.get('mask_type', 'device')
262
+ device_name = request.data.get('device_name')
263
+ roi = request.data.get('roi')
264
+ processing_method = request.data.get('processing_method', 'streaming')
265
+
266
+ # Validate required parameters
267
+ if mask_type == 'device' and not device_name:
268
+ return Response(
269
+ {'error': 'device_name required for device mask'},
270
+ status=status.HTTP_400_BAD_REQUEST
271
+ )
272
+
273
+ if mask_type == 'custom' and not roi:
274
+ return Response(
275
+ {'error': 'roi required for custom mask'},
276
+ status=status.HTTP_400_BAD_REQUEST
277
+ )
278
+
279
+ # Create processing history record
280
+ history = VideoProcessingHistory.objects.create(
281
+ video=video,
282
+ operation=VideoProcessingHistory.OPERATION_MASKING,
283
+ status=VideoProcessingHistory.STATUS_PENDING,
284
+ config={
285
+ 'mask_type': mask_type,
286
+ 'device_name': device_name,
287
+ 'roi': roi,
288
+ 'processing_method': processing_method
289
+ }
290
+ )
291
+
292
+ try:
293
+ history.mark_running()
294
+
295
+ # Initialize FrameCleaner
296
+ frame_cleaner = FrameCleaner()
297
+
298
+ # Get video paths
299
+ video_path = Path(video.raw_file.path) if hasattr(video.raw_file, 'path') else Path(str(video.raw_file))
300
+ output_path = Path(settings.MEDIA_ROOT) / 'anonym_videos' / f"{video.uuid}_masked.mp4"
301
+ output_path.parent.mkdir(parents=True, exist_ok=True)
302
+
303
+ # Load or create mask config
304
+ if mask_type == 'device':
305
+ # Load device-specific mask from lx_anonymizer/masks/
306
+ mask_config = frame_cleaner._load_mask(device_name)
307
+ else: # custom
308
+ # Convert ROI to mask config
309
+ mask_config = frame_cleaner._create_mask_config_from_roi(
310
+ endoscope_roi=roi,
311
+ )
312
+
313
+ # Apply mask (uses existing FrameCleaner._mask_video)
314
+ import time
315
+ start_time = time.time()
316
+
317
+ success = frame_cleaner._mask_video(
318
+ input_video=video_path,
319
+ mask_config=mask_config,
320
+ output_video=output_path
321
+ )
322
+
323
+ processing_time = time.time() - start_time
324
+
325
+ if success:
326
+ # Update video record with anonymized file
327
+ from django.core.files import File
328
+ processed_file_path = output_path
329
+ update_processed_file(video, processed_file_path)
330
+ # Mark history as success
331
+ history.mark_success(
332
+ output_file=str(output_path),
333
+ details=f"Masking completed in {processing_time:.1f}s"
334
+ )
335
+
336
+ logger.info(f"Video {pk} masked successfully: {output_path}")
337
+
338
+ return Response({
339
+ 'task_id': None, # Will be Celery task ID in Phase 1.2
340
+ 'output_file': str(output_path),
341
+ 'message': 'Masking complete',
342
+ 'processing_time': processing_time
343
+ })
344
+ else:
345
+ raise Exception("Masking failed - check FFmpeg logs")
346
+
347
+ except Exception as e:
348
+ logger.error(f"Video masking failed for {pk}: {str(e)}", exc_info=True)
349
+
350
+ history.mark_failure(str(e))
351
+
352
+ return Response(
353
+ {'error': f'Masking failed: {str(e)}'},
354
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR
355
+ )
356
+
357
+
358
+ class VideoRemoveFramesView(APIView):
359
+ """
360
+ POST /api/media/videos/{pk}/remove-frames/
361
+
362
+ Remove specified frames from video.
363
+
364
+ Request body:
365
+ {
366
+ "frame_list": [10, 15, 20, 30], // explicit frame numbers
367
+ // OR
368
+ "frame_ranges": "10-20,30,45-50", // range string
369
+ // OR
370
+ "detection_method": "automatic", // use analysis results
371
+
372
+ "processing_method": "streaming" // or "traditional"
373
+ }
374
+
375
+ Returns:
376
+ {
377
+ "task_id": "abc-123-def",
378
+ "output_file": "/path/to/cleaned_video.mp4",
379
+ "frames_removed": 42,
380
+ "message": "Frame removal complete",
381
+ "processing_time": 180.3
382
+ }
383
+
384
+ Note: Currently synchronous. Will be converted to Celery task in Phase 1.2.
385
+ """
386
+
387
+ def post(self, request, pk):
388
+ """Remove frames from video."""
389
+ video = get_object_or_404(VideoFile, pk=pk)
390
+
391
+ # Extract parameters
392
+ frame_list = request.data.get('frame_list')
393
+ frame_ranges = request.data.get('frame_ranges')
394
+ detection_method = request.data.get('detection_method')
395
+ processing_method = request.data.get('processing_method', 'streaming')
396
+
397
+ # Determine frames to remove
398
+ frames_to_remove = []
399
+
400
+ if frame_list:
401
+ frames_to_remove = frame_list
402
+ elif frame_ranges:
403
+ frames_to_remove = self._parse_frame_ranges(frame_ranges)
404
+ elif detection_method == 'automatic':
405
+ # Use existing analysis results
406
+ try:
407
+ metadata = VideoMetadata.objects.get(video=video)
408
+ if metadata.sensitive_frame_ids:
409
+ frames_to_remove = json.loads(metadata.sensitive_frame_ids)
410
+ else:
411
+ return Response(
412
+ {'error': 'No analysis results available. Run analysis first.'},
413
+ status=status.HTTP_400_BAD_REQUEST
414
+ )
415
+ except VideoMetadata.DoesNotExist:
416
+ return Response(
417
+ {'error': 'Video not analyzed. Run analysis first.'},
418
+ status=status.HTTP_400_BAD_REQUEST
419
+ )
420
+ else:
421
+ return Response(
422
+ {'error': 'Must provide frame_list, frame_ranges, or detection_method=automatic'},
423
+ status=status.HTTP_400_BAD_REQUEST
424
+ )
425
+
426
+ if not frames_to_remove:
427
+ return Response(
428
+ {'error': 'No frames to remove'},
429
+ status=status.HTTP_400_BAD_REQUEST
430
+ )
431
+
432
+ # Create processing history record
433
+ history = VideoProcessingHistory.objects.create(
434
+ video=video,
435
+ operation=VideoProcessingHistory.OPERATION_FRAME_REMOVAL,
436
+ status=VideoProcessingHistory.STATUS_PENDING,
437
+ config={
438
+ 'frames_to_remove': frames_to_remove,
439
+ 'frame_count': len(frames_to_remove),
440
+ 'processing_method': processing_method
441
+ }
442
+ )
443
+
444
+ try:
445
+ history.mark_running()
446
+
447
+ # Initialize FrameCleaner
448
+ frame_cleaner = FrameCleaner()
449
+
450
+ # Get video paths
451
+ video_path = Path(video.raw_file.path) if hasattr(video.raw_file, 'path') else Path(str(video.raw_file))
452
+ output_path = Path(settings.MEDIA_ROOT) / 'anonym_videos' / f"{video.uuid}_cleaned.mp4"
453
+ output_path.parent.mkdir(parents=True, exist_ok=True)
454
+
455
+ # Remove frames (uses existing FrameCleaner.remove_frames_from_video)
456
+ import time
457
+ start_time = time.time()
458
+
459
+ success = frame_cleaner.remove_frames_from_video(
460
+ original_video=video_path,
461
+ frames_to_remove=frames_to_remove,
462
+ output_video=output_path
463
+ )
464
+
465
+ processing_time = time.time() - start_time
466
+
467
+ if success:
468
+ # Update video record
469
+ update_processed_file(video, output_path)
470
+
471
+
472
+ # Phase 1.4: Update LabelVideoSegments (shift frame numbers)
473
+ segment_update_result = update_segments_after_frame_removal(video, frames_to_remove)
474
+
475
+ # Mark history as success with segment update info
476
+ details_parts = [
477
+ f"Removed {len(frames_to_remove)} frames in {processing_time:.1f}s"
478
+ ]
479
+ if segment_update_result['segments_updated'] > 0:
480
+ details_parts.append(
481
+ f"Updated {segment_update_result['segments_updated']} segments"
482
+ )
483
+ if segment_update_result['segments_deleted'] > 0:
484
+ details_parts.append(
485
+ f"Deleted {segment_update_result['segments_deleted']} segments (all frames removed)"
486
+ )
487
+
488
+ history.mark_success(
489
+ output_file=str(output_path),
490
+ details="; ".join(details_parts)
491
+ )
492
+
493
+ logger.info(f"Video {pk} cleaned: removed {len(frames_to_remove)} frames")
494
+
495
+ return Response({
496
+ 'task_id': None, # Will be Celery task ID in Phase 1.2
497
+ 'output_file': str(output_path),
498
+ 'frames_removed': len(frames_to_remove),
499
+ 'segment_updates': segment_update_result,
500
+ 'message': 'Frame removal complete',
501
+ 'processing_time': processing_time
502
+ })
503
+ else:
504
+ raise Exception("Frame removal failed - check FFmpeg logs")
505
+
506
+ except Exception as e:
507
+ logger.error(f"Frame removal failed for {pk}: {str(e)}", exc_info=True)
508
+
509
+ history.mark_failure(str(e))
510
+
511
+ return Response(
512
+ {'error': f'Frame removal failed: {str(e)}'},
513
+ status=status.HTTP_500_INTERNAL_SERVER_ERROR
514
+ )
515
+
516
+ def _parse_frame_ranges(self, ranges_str: str) -> list:
517
+ """
518
+ Parse frame ranges string to list of frame numbers.
519
+
520
+ Example: "10-20,30,45-50" -> [10,11,...,20,30,45,...,50]
521
+ """
522
+ frames = []
523
+ for part in ranges_str.split(','):
524
+ part = part.strip()
525
+ if '-' in part:
526
+ start, end = map(int, part.split('-'))
527
+ frames.extend(range(start, end + 1))
528
+ else:
529
+ frames.append(int(part))
530
+ return sorted(set(frames)) # Remove duplicates and sort