endoreg-db 0.8.6.4__py3-none-any.whl

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  1. endoreg_db/__init__.py +0 -0
  2. endoreg_db/admin.py +92 -0
  3. endoreg_db/api/serializers/finding_descriptions.py +0 -0
  4. endoreg_db/api/views/finding_descriptions.py +0 -0
  5. endoreg_db/api_urls.py +4 -0
  6. endoreg_db/apps.py +18 -0
  7. endoreg_db/assets/dummy_model.ckpt +1 -0
  8. endoreg_db/codemods/readme.md +88 -0
  9. endoreg_db/codemods/rename_datetime_fields.py +92 -0
  10. endoreg_db/config/__init__.py +0 -0
  11. endoreg_db/config/env.py +101 -0
  12. endoreg_db/data/__init__.py +144 -0
  13. endoreg_db/data/ai_model/data.yaml +7 -0
  14. endoreg_db/data/ai_model_label/label/data.yaml +88 -0
  15. endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
  16. endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
  17. endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
  18. endoreg_db/data/ai_model_label/label-type/data.yaml +7 -0
  19. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
  20. endoreg_db/data/ai_model_type/data.yaml +7 -0
  21. endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
  22. endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
  23. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  24. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  25. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  26. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  27. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  28. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  29. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  30. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  31. endoreg_db/data/case_template/rule_value/.init +0 -0
  32. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  33. endoreg_db/data/case_template/template/base.yaml +8 -0
  34. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  35. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  36. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  37. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  38. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  39. endoreg_db/data/center/data.yaml +91 -0
  40. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  41. endoreg_db/data/center_shift/ukw.yaml +9 -0
  42. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  43. endoreg_db/data/contraindication/bleeding.yaml +11 -0
  44. endoreg_db/data/db_summary.csv +58 -0
  45. endoreg_db/data/db_summary.xlsx +0 -0
  46. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  47. endoreg_db/data/disease/hepatology.yaml +5 -0
  48. endoreg_db/data/disease/misc.yaml +5 -0
  49. endoreg_db/data/disease/renal.yaml +5 -0
  50. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  51. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  52. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  53. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  54. endoreg_db/data/distribution/date/patient.yaml +7 -0
  55. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  56. endoreg_db/data/distribution/numeric/data.yaml +14 -0
  57. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  58. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  59. endoreg_db/data/endoscope/data.yaml +93 -0
  60. endoreg_db/data/endoscope_type/data.yaml +11 -0
  61. endoreg_db/data/endoscopy_processor/data.yaml +50 -0
  62. endoreg_db/data/event/cardiology.yaml +15 -0
  63. endoreg_db/data/event/neurology.yaml +14 -0
  64. endoreg_db/data/event/surgery.yaml +13 -0
  65. endoreg_db/data/event/thrombembolism.yaml +20 -0
  66. endoreg_db/data/examination/examinations/data.yaml +72 -0
  67. endoreg_db/data/examination/time/data.yaml +48 -0
  68. endoreg_db/data/examination/time-type/data.yaml +8 -0
  69. endoreg_db/data/examination/type/data.yaml +17 -0
  70. endoreg_db/data/examination_indication/endoscopy.yaml +424 -0
  71. endoreg_db/data/examination_indication_classification/endoscopy.yaml +160 -0
  72. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
  73. endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
  74. endoreg_db/data/finding/anatomy_colon.yaml +128 -0
  75. endoreg_db/data/finding/colonoscopy.yaml +40 -0
  76. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
  77. endoreg_db/data/finding/complication.yaml +16 -0
  78. endoreg_db/data/finding/data.yaml +105 -0
  79. endoreg_db/data/finding/examination_setting.yaml +16 -0
  80. endoreg_db/data/finding/medication_related.yaml +18 -0
  81. endoreg_db/data/finding/outcome.yaml +12 -0
  82. endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
  83. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
  84. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
  85. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
  86. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
  87. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
  88. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
  89. endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
  90. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
  91. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
  92. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
  93. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
  94. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
  95. endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
  96. endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
  97. endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
  98. endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
  99. endoreg_db/data/finding_classification/medication_related.yaml +23 -0
  100. endoreg_db/data/finding_classification/visualized.yaml +33 -0
  101. endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
  102. endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
  103. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
  104. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
  105. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
  106. endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +17 -0
  107. endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +57 -0
  108. endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
  109. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
  110. endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
  111. endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +229 -0
  112. endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
  113. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
  114. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
  115. endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
  116. endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
  117. endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
  118. endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
  119. endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
  120. endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
  121. endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
  122. endoreg_db/data/finding_intervention/endoscopy.yaml +43 -0
  123. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
  124. endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
  125. endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
  126. endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
  127. endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
  128. endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
  129. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
  130. endoreg_db/data/finding_type/data.yaml +43 -0
  131. endoreg_db/data/gender/data.yaml +42 -0
  132. endoreg_db/data/information_source/annotation.yaml +6 -0
  133. endoreg_db/data/information_source/data.yaml +30 -0
  134. endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
  135. endoreg_db/data/information_source/medication.yaml +6 -0
  136. endoreg_db/data/information_source/prediction.yaml +7 -0
  137. endoreg_db/data/information_source_type/data.yaml +8 -0
  138. endoreg_db/data/lab_value/cardiac_enzymes.yaml +37 -0
  139. endoreg_db/data/lab_value/coagulation.yaml +54 -0
  140. endoreg_db/data/lab_value/electrolytes.yaml +228 -0
  141. endoreg_db/data/lab_value/gastrointestinal_function.yaml +133 -0
  142. endoreg_db/data/lab_value/hematology.yaml +184 -0
  143. endoreg_db/data/lab_value/hormones.yaml +59 -0
  144. endoreg_db/data/lab_value/lipids.yaml +53 -0
  145. endoreg_db/data/lab_value/misc.yaml +76 -0
  146. endoreg_db/data/lab_value/renal_function.yaml +12 -0
  147. endoreg_db/data/log_type/data.yaml +57 -0
  148. endoreg_db/data/lx_client_tag/base.yaml +54 -0
  149. endoreg_db/data/lx_client_type/base.yaml +30 -0
  150. endoreg_db/data/lx_permission/base.yaml +24 -0
  151. endoreg_db/data/lx_permission/endoreg.yaml +52 -0
  152. endoreg_db/data/material/material.yaml +91 -0
  153. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  154. endoreg_db/data/medication/tah.yaml +70 -0
  155. endoreg_db/data/medication_indication/anticoagulation.yaml +115 -0
  156. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  157. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  158. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  159. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  160. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  161. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  162. endoreg_db/data/names_first/first_names.yaml +54 -0
  163. endoreg_db/data/names_last/last_names.yaml +51 -0
  164. endoreg_db/data/network_device/data.yaml +59 -0
  165. endoreg_db/data/network_device_type/data.yaml +12 -0
  166. endoreg_db/data/organ/data.yaml +29 -0
  167. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  168. endoreg_db/data/pdf_type/data.yaml +46 -0
  169. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  170. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  171. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  172. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  173. endoreg_db/data/profession/data.yaml +70 -0
  174. endoreg_db/data/qualification/endoscopy.yaml +36 -0
  175. endoreg_db/data/qualification/m2.yaml +39 -0
  176. endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
  177. endoreg_db/data/qualification/sonography.yaml +36 -0
  178. endoreg_db/data/qualification_type/base.yaml +29 -0
  179. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  180. endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
  181. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +30 -0
  182. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +24 -0
  183. endoreg_db/data/requirement/age.yaml +26 -0
  184. endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
  185. endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
  186. endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
  187. endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
  188. endoreg_db/data/requirement/disease_misc.yaml +12 -0
  189. endoreg_db/data/requirement/disease_renal.yaml +96 -0
  190. endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
  191. endoreg_db/data/requirement/event_cardiology.yaml +251 -0
  192. endoreg_db/data/requirement/event_requirements.yaml +145 -0
  193. endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
  194. endoreg_db/data/requirement/gender.yaml +25 -0
  195. endoreg_db/data/requirement/lab_value.yaml +441 -0
  196. endoreg_db/data/requirement/medication.yaml +93 -0
  197. endoreg_db/data/requirement_operator/age.yaml +13 -0
  198. endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
  199. endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
  200. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
  201. endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
  202. endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
  203. endoreg_db/data/requirement_set_type/data.yaml +20 -0
  204. endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
  205. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  206. endoreg_db/data/risk/bleeding.yaml +26 -0
  207. endoreg_db/data/risk/thrombosis.yaml +37 -0
  208. endoreg_db/data/risk_type/data.yaml +27 -0
  209. endoreg_db/data/setup_config.yaml +38 -0
  210. endoreg_db/data/shift/endoscopy.yaml +21 -0
  211. endoreg_db/data/shift/m2.yaml +0 -0
  212. endoreg_db/data/shift_type/base.yaml +35 -0
  213. endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
  214. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  215. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  216. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  217. endoreg_db/data/unit/concentration.yaml +115 -0
  218. endoreg_db/data/unit/data.yaml +17 -0
  219. endoreg_db/data/unit/length.yaml +31 -0
  220. endoreg_db/data/unit/misc.yaml +20 -0
  221. endoreg_db/data/unit/rate.yaml +6 -0
  222. endoreg_db/data/unit/time.yaml +48 -0
  223. endoreg_db/data/unit/volume.yaml +35 -0
  224. endoreg_db/data/unit/weight.yaml +38 -0
  225. endoreg_db/data/waste/data.yaml +12 -0
  226. endoreg_db/exceptions.py +19 -0
  227. endoreg_db/factories/__init__.py +0 -0
  228. endoreg_db/forms/__init__.py +5 -0
  229. endoreg_db/forms/examination_form.py +11 -0
  230. endoreg_db/forms/patient_finding_intervention_form.py +18 -0
  231. endoreg_db/forms/patient_form.py +27 -0
  232. endoreg_db/forms/questionnaires/__init__.py +1 -0
  233. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -0
  234. endoreg_db/forms/settings/__init__.py +8 -0
  235. endoreg_db/forms/unit.py +6 -0
  236. endoreg_db/helpers/__init__.py +0 -0
  237. endoreg_db/helpers/count_db.py +45 -0
  238. endoreg_db/helpers/data_loader.py +208 -0
  239. endoreg_db/helpers/default_objects.py +378 -0
  240. endoreg_db/helpers/download_segmentation_model.py +31 -0
  241. endoreg_db/helpers/interact.py +6 -0
  242. endoreg_db/helpers/test_video_helper.py +119 -0
  243. endoreg_db/logger_conf.py +140 -0
  244. endoreg_db/management/__init__.py +1 -0
  245. endoreg_db/management/commands/__init__.py +1 -0
  246. endoreg_db/management/commands/anonymize_video.py +0 -0
  247. endoreg_db/management/commands/check_auth.py +125 -0
  248. endoreg_db/management/commands/create_model_meta_from_huggingface.py +115 -0
  249. endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
  250. endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
  251. endoreg_db/management/commands/fix_video_paths.py +165 -0
  252. endoreg_db/management/commands/import_fallback_video.py +203 -0
  253. endoreg_db/management/commands/import_report.py +298 -0
  254. endoreg_db/management/commands/import_video.py +423 -0
  255. endoreg_db/management/commands/import_video_with_classification.py +367 -0
  256. endoreg_db/management/commands/init_default_ai_model.py +112 -0
  257. endoreg_db/management/commands/load_ai_model_data.py +77 -0
  258. endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
  259. endoreg_db/management/commands/load_base_db_data.py +192 -0
  260. endoreg_db/management/commands/load_center_data.py +68 -0
  261. endoreg_db/management/commands/load_contraindication_data.py +41 -0
  262. endoreg_db/management/commands/load_disease_classification_choices_data.py +41 -0
  263. endoreg_db/management/commands/load_disease_classification_data.py +41 -0
  264. endoreg_db/management/commands/load_disease_data.py +62 -0
  265. endoreg_db/management/commands/load_distribution_data.py +66 -0
  266. endoreg_db/management/commands/load_endoscope_data.py +68 -0
  267. endoreg_db/management/commands/load_event_data.py +41 -0
  268. endoreg_db/management/commands/load_examination_data.py +75 -0
  269. endoreg_db/management/commands/load_examination_indication_data.py +86 -0
  270. endoreg_db/management/commands/load_finding_data.py +128 -0
  271. endoreg_db/management/commands/load_gender_data.py +44 -0
  272. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -0
  273. endoreg_db/management/commands/load_information_source.py +51 -0
  274. endoreg_db/management/commands/load_lab_value_data.py +50 -0
  275. endoreg_db/management/commands/load_medication_data.py +103 -0
  276. endoreg_db/management/commands/load_name_data.py +37 -0
  277. endoreg_db/management/commands/load_organ_data.py +43 -0
  278. endoreg_db/management/commands/load_pdf_type_data.py +61 -0
  279. endoreg_db/management/commands/load_profession_data.py +44 -0
  280. endoreg_db/management/commands/load_qualification_data.py +59 -0
  281. endoreg_db/management/commands/load_report_reader_flag_data.py +46 -0
  282. endoreg_db/management/commands/load_requirement_data.py +180 -0
  283. endoreg_db/management/commands/load_risk_data.py +56 -0
  284. endoreg_db/management/commands/load_shift_data.py +60 -0
  285. endoreg_db/management/commands/load_tag_data.py +57 -0
  286. endoreg_db/management/commands/load_unit_data.py +46 -0
  287. endoreg_db/management/commands/load_user_groups.py +28 -0
  288. endoreg_db/management/commands/register_ai_model.py +64 -0
  289. endoreg_db/management/commands/reset_celery_schedule.py +9 -0
  290. endoreg_db/management/commands/setup_endoreg_db.py +381 -0
  291. endoreg_db/management/commands/start_filewatcher.py +106 -0
  292. endoreg_db/management/commands/storage_management.py +548 -0
  293. endoreg_db/management/commands/summarize_db_content.py +189 -0
  294. endoreg_db/management/commands/validate_video.py +204 -0
  295. endoreg_db/management/commands/validate_video_files.py +161 -0
  296. endoreg_db/management/commands/video_validation.py +22 -0
  297. endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
  298. endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
  299. endoreg_db/mermaid/binary_classification_annotation.md +50 -0
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  607. endoreg_db/tasks/video_ingest.py +157 -0
  608. endoreg_db/tasks/video_processing_tasks.py +327 -0
  609. endoreg_db/templates/admin/patient_finding_intervention.html +253 -0
  610. endoreg_db/templates/admin/start_examination.html +12 -0
  611. endoreg_db/templates/timeline.html +176 -0
  612. endoreg_db/urls/__init__.py +83 -0
  613. endoreg_db/urls/anonymization.py +32 -0
  614. endoreg_db/urls/auth.py +16 -0
  615. endoreg_db/urls/classification.py +39 -0
  616. endoreg_db/urls/examination.py +54 -0
  617. endoreg_db/urls/files.py +6 -0
  618. endoreg_db/urls/label_video_segment_validate.py +33 -0
  619. endoreg_db/urls/label_video_segments.py +46 -0
  620. endoreg_db/urls/media.py +227 -0
  621. endoreg_db/urls/patient.py +19 -0
  622. endoreg_db/urls/report.py +48 -0
  623. endoreg_db/urls/requirements.py +13 -0
  624. endoreg_db/urls/sensitive_meta.py +0 -0
  625. endoreg_db/urls/stats.py +46 -0
  626. endoreg_db/urls/upload.py +20 -0
  627. endoreg_db/urls/video.py +61 -0
  628. endoreg_db/urls.py +9 -0
  629. endoreg_db/utils/__init__.py +88 -0
  630. endoreg_db/utils/ai/__init__.py +9 -0
  631. endoreg_db/utils/ai/get.py +5 -0
  632. endoreg_db/utils/ai/inference_dataset.py +52 -0
  633. endoreg_db/utils/ai/multilabel_classification_net.py +159 -0
  634. endoreg_db/utils/ai/postprocess.py +63 -0
  635. endoreg_db/utils/ai/predict.py +291 -0
  636. endoreg_db/utils/ai/preprocess.py +68 -0
  637. endoreg_db/utils/calc_duration_seconds.py +24 -0
  638. endoreg_db/utils/case_generator/__init__.py +0 -0
  639. endoreg_db/utils/case_generator/case_generator.py +159 -0
  640. endoreg_db/utils/case_generator/lab_sample_factory.py +33 -0
  641. endoreg_db/utils/case_generator/utils.py +30 -0
  642. endoreg_db/utils/check_video_files.py +148 -0
  643. endoreg_db/utils/cropping.py +29 -0
  644. endoreg_db/utils/dataloader.py +175 -0
  645. endoreg_db/utils/dates.py +60 -0
  646. endoreg_db/utils/env.py +33 -0
  647. endoreg_db/utils/extract_specific_frames.py +72 -0
  648. endoreg_db/utils/file_operations.py +58 -0
  649. endoreg_db/utils/fix_video_path_direct.py +141 -0
  650. endoreg_db/utils/frame_anonymization_utils.py +463 -0
  651. endoreg_db/utils/hashs.py +153 -0
  652. endoreg_db/utils/links/__init__.py +0 -0
  653. endoreg_db/utils/links/requirement_link.py +193 -0
  654. endoreg_db/utils/mime_types.py +0 -0
  655. endoreg_db/utils/names.py +76 -0
  656. endoreg_db/utils/ocr.py +190 -0
  657. endoreg_db/utils/parse_and_generate_yaml.py +46 -0
  658. endoreg_db/utils/paths.py +95 -0
  659. endoreg_db/utils/permissions.py +143 -0
  660. endoreg_db/utils/pipelines/Readme.md +235 -0
  661. endoreg_db/utils/pipelines/__init__.py +0 -0
  662. endoreg_db/utils/pipelines/process_video_dir.py +120 -0
  663. endoreg_db/utils/product/__init__.py +0 -0
  664. endoreg_db/utils/product/sum_emissions.py +20 -0
  665. endoreg_db/utils/product/sum_weights.py +18 -0
  666. endoreg_db/utils/pydantic_models/__init__.py +6 -0
  667. endoreg_db/utils/pydantic_models/db_config.py +57 -0
  668. endoreg_db/utils/requirement_helpers.py +0 -0
  669. endoreg_db/utils/requirement_operator_logic/__init__.py +0 -0
  670. endoreg_db/utils/requirement_operator_logic/lab_value_operators.py +578 -0
  671. endoreg_db/utils/requirement_operator_logic/model_evaluators.py +368 -0
  672. endoreg_db/utils/setup_config.py +177 -0
  673. endoreg_db/utils/translation.py +27 -0
  674. endoreg_db/utils/uuid.py +4 -0
  675. endoreg_db/utils/validate_endo_roi.py +19 -0
  676. endoreg_db/utils/validate_subcategory_dict.py +91 -0
  677. endoreg_db/utils/validate_video_detailed.py +357 -0
  678. endoreg_db/utils/video/__init__.py +26 -0
  679. endoreg_db/utils/video/extract_frames.py +88 -0
  680. endoreg_db/utils/video/ffmpeg_wrapper.py +835 -0
  681. endoreg_db/utils/video/names.py +42 -0
  682. endoreg_db/utils/video/streaming_processor.py +312 -0
  683. endoreg_db/utils/video/video_splitter.py +94 -0
  684. endoreg_db/views/Frames_NICE_and_PARIS_classifications_views.py +238 -0
  685. endoreg_db/views/__init__.py +274 -0
  686. endoreg_db/views/anonymization/__init__.py +27 -0
  687. endoreg_db/views/anonymization/media_management.py +454 -0
  688. endoreg_db/views/anonymization/overview.py +216 -0
  689. endoreg_db/views/anonymization/validate.py +107 -0
  690. endoreg_db/views/auth/__init__.py +13 -0
  691. endoreg_db/views/auth/keycloak.py +113 -0
  692. endoreg_db/views/examination/__init__.py +33 -0
  693. endoreg_db/views/examination/examination.py +37 -0
  694. endoreg_db/views/examination/examination_manifest_cache.py +26 -0
  695. endoreg_db/views/examination/get_finding_classification_choices.py +59 -0
  696. endoreg_db/views/examination/get_finding_classifications.py +36 -0
  697. endoreg_db/views/examination/get_findings.py +41 -0
  698. endoreg_db/views/examination/get_instruments.py +18 -0
  699. endoreg_db/views/examination/get_interventions.py +14 -0
  700. endoreg_db/views/finding/__init__.py +9 -0
  701. endoreg_db/views/finding/finding.py +112 -0
  702. endoreg_db/views/finding/get_classifications.py +14 -0
  703. endoreg_db/views/finding/get_interventions.py +17 -0
  704. endoreg_db/views/finding_classification/__init__.py +13 -0
  705. endoreg_db/views/finding_classification/base.py +0 -0
  706. endoreg_db/views/finding_classification/finding_classification.py +42 -0
  707. endoreg_db/views/finding_classification/get_classification_choices.py +55 -0
  708. endoreg_db/views/label/__init__.py +5 -0
  709. endoreg_db/views/label/label.py +15 -0
  710. endoreg_db/views/label_video_segment/__init__.py +16 -0
  711. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +44 -0
  712. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +50 -0
  713. endoreg_db/views/label_video_segment/label_video_segment.py +77 -0
  714. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +174 -0
  715. endoreg_db/views/label_video_segment/label_video_segment_detail.py +73 -0
  716. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +46 -0
  717. endoreg_db/views/label_video_segment/validate.py +226 -0
  718. endoreg_db/views/media/__init__.py +45 -0
  719. endoreg_db/views/media/pdf_media.py +388 -0
  720. endoreg_db/views/media/segments.py +71 -0
  721. endoreg_db/views/media/sensitive_metadata.py +314 -0
  722. endoreg_db/views/media/video_media.py +272 -0
  723. endoreg_db/views/media/video_segments.py +524 -0
  724. endoreg_db/views/meta/__init__.py +15 -0
  725. endoreg_db/views/meta/available_files_list.py +146 -0
  726. endoreg_db/views/meta/report_meta.py +53 -0
  727. endoreg_db/views/meta/sensitive_meta_detail.py +148 -0
  728. endoreg_db/views/meta/sensitive_meta_list.py +104 -0
  729. endoreg_db/views/meta/sensitive_meta_verification.py +71 -0
  730. endoreg_db/views/misc/__init__.py +63 -0
  731. endoreg_db/views/misc/center.py +13 -0
  732. endoreg_db/views/misc/csrf.py +7 -0
  733. endoreg_db/views/misc/gender.py +14 -0
  734. endoreg_db/views/misc/secure_file_serving_view.py +80 -0
  735. endoreg_db/views/misc/secure_file_url_view.py +84 -0
  736. endoreg_db/views/misc/secure_url_validate.py +79 -0
  737. endoreg_db/views/misc/stats.py +220 -0
  738. endoreg_db/views/misc/translation.py +182 -0
  739. endoreg_db/views/misc/upload_views.py +240 -0
  740. endoreg_db/views/patient/__init__.py +5 -0
  741. endoreg_db/views/patient/patient.py +210 -0
  742. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +164 -0
  743. endoreg_db/views/patient_examination/__init__.py +11 -0
  744. endoreg_db/views/patient_examination/patient_examination.py +140 -0
  745. endoreg_db/views/patient_examination/patient_examination_create.py +63 -0
  746. endoreg_db/views/patient_examination/patient_examination_detail.py +66 -0
  747. endoreg_db/views/patient_examination/patient_examination_list.py +68 -0
  748. endoreg_db/views/patient_examination/video.py +194 -0
  749. endoreg_db/views/patient_finding/__init__.py +7 -0
  750. endoreg_db/views/patient_finding/base.py +0 -0
  751. endoreg_db/views/patient_finding/patient_finding.py +64 -0
  752. endoreg_db/views/patient_finding/patient_finding_optimized.py +259 -0
  753. endoreg_db/views/patient_finding_classification/__init__.py +5 -0
  754. endoreg_db/views/patient_finding_classification/pfc_create.py +67 -0
  755. endoreg_db/views/patient_finding_location/__init__.py +5 -0
  756. endoreg_db/views/patient_finding_location/pfl_create.py +70 -0
  757. endoreg_db/views/patient_finding_morphology/__init__.py +5 -0
  758. endoreg_db/views/patient_finding_morphology/pfm_create.py +70 -0
  759. endoreg_db/views/pdf/__init__.py +8 -0
  760. endoreg_db/views/pdf/pdf_stream.py +186 -0
  761. endoreg_db/views/pdf/reimport.py +177 -0
  762. endoreg_db/views/report/__init__.py +9 -0
  763. endoreg_db/views/report/report_list.py +112 -0
  764. endoreg_db/views/report/report_with_secure_url.py +28 -0
  765. endoreg_db/views/report/start_examination.py +7 -0
  766. endoreg_db/views/requirement/__init__.py +10 -0
  767. endoreg_db/views/requirement/evaluate.py +279 -0
  768. endoreg_db/views/requirement/lookup.py +367 -0
  769. endoreg_db/views/requirement/lookup_store.py +252 -0
  770. endoreg_db/views/requirement_lookup/lookup.py +0 -0
  771. endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
  772. endoreg_db/views/stats/__init__.py +13 -0
  773. endoreg_db/views/stats/stats_views.py +229 -0
  774. endoreg_db/views/video/__init__.py +59 -0
  775. endoreg_db/views/video/correction.py +530 -0
  776. endoreg_db/views/video/reimport.py +195 -0
  777. endoreg_db/views/video/segmentation.py +274 -0
  778. endoreg_db/views/video/task_status.py +49 -0
  779. endoreg_db/views/video/timeline.py +46 -0
  780. endoreg_db/views/video/video_analyze.py +52 -0
  781. endoreg_db/views/video/video_apply_mask.py +48 -0
  782. endoreg_db/views/video/video_correction.py +21 -0
  783. endoreg_db/views/video/video_download_processed.py +58 -0
  784. endoreg_db/views/video/video_examination_viewset.py +242 -0
  785. endoreg_db/views/video/video_meta.py +29 -0
  786. endoreg_db/views/video/video_processing_history.py +24 -0
  787. endoreg_db/views/video/video_remove_frames.py +48 -0
  788. endoreg_db/views/video/video_stream.py +306 -0
  789. endoreg_db/views.py +0 -0
  790. endoreg_db-0.8.6.4.dist-info/METADATA +383 -0
  791. endoreg_db-0.8.6.4.dist-info/RECORD +793 -0
  792. endoreg_db-0.8.6.4.dist-info/WHEEL +4 -0
  793. endoreg_db-0.8.6.4.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,463 @@
1
+ """
2
+ Utility-Funktionen für Frame-Anonymisierung
3
+
4
+ Diese Datei enthält Hilfsfunktionen für die Frame-Anonymisierung,
5
+ einschließlich Bildverarbeitung, Pfad-Management und Sicherheitsfunktionen.
6
+ """
7
+
8
+ import hashlib
9
+ import secrets
10
+ from pathlib import Path
11
+ from typing import Optional, Dict, List
12
+ from datetime import datetime, timedelta
13
+ import logging
14
+
15
+ from django.conf import settings
16
+ from django.core.exceptions import ValidationError
17
+ from django.utils import timezone
18
+
19
+ logger = logging.getLogger(__name__)
20
+
21
+ # Unterstützte Ausgabeformate
22
+ SUPPORTED_OUTPUT_FORMATS = ['jpg', 'jpeg', 'png', 'webp']
23
+
24
+ # Anonymisierungsgrade
25
+ ANONYMIZATION_LEVELS = ['minimal', 'faces', 'full']
26
+
27
+ # Maximale Dateigröße für Frames (in MB)
28
+ MAX_FRAME_SIZE_MB = 50
29
+
30
+
31
+ def validate_anonymization_request(video_id: int, segment_ids: List[int],
32
+ anonymization_level: str, output_format: str) -> Dict:
33
+ """
34
+ Validiert eine Frame-Anonymisierungsanfrage.
35
+
36
+ Args:
37
+ video_id: Video-ID
38
+ segment_ids: Liste der Segment-IDs
39
+ anonymization_level: Anonymisierungsgrad
40
+ output_format: Ausgabeformat
41
+
42
+ Returns:
43
+ Dict mit Validierungsergebnis
44
+
45
+ Raises:
46
+ ValidationError: Bei ungültigen Parametern
47
+ """
48
+ errors = []
49
+
50
+ # Anonymisierungsgrad validieren
51
+ if anonymization_level not in ANONYMIZATION_LEVELS:
52
+ errors.append(f"Invalid anonymization level: {anonymization_level}. "
53
+ f"Supported levels: {', '.join(ANONYMIZATION_LEVELS)}")
54
+
55
+ # Ausgabeformat validieren
56
+ if output_format.lower() not in SUPPORTED_OUTPUT_FORMATS:
57
+ errors.append(f"Invalid output format: {output_format}. "
58
+ f"Supported formats: {', '.join(SUPPORTED_OUTPUT_FORMATS)}")
59
+
60
+ # Segment-IDs validieren
61
+ if not segment_ids or len(segment_ids) == 0:
62
+ errors.append("At least one segment ID must be provided")
63
+
64
+ if len(segment_ids) > 100: # Reasonable limit
65
+ errors.append("Too many segments requested (max 100)")
66
+
67
+ # Video-ID validieren
68
+ if video_id <= 0:
69
+ errors.append("Invalid video ID")
70
+
71
+ if errors:
72
+ raise ValidationError(errors)
73
+
74
+ return {
75
+ 'valid': True,
76
+ 'normalized_format': output_format.lower(),
77
+ 'segment_count': len(segment_ids)
78
+ }
79
+
80
+
81
+ def generate_secure_token(length: int = 32) -> str:
82
+ """
83
+ Generiert einen sicheren Token für Downloads.
84
+
85
+ Args:
86
+ length: Token-Länge
87
+
88
+ Returns:
89
+ Sicherer Token
90
+ """
91
+ return secrets.token_urlsafe(length)
92
+
93
+
94
+ def create_secure_download_url(frame_id: int, expiry_hours: int = 24) -> Dict:
95
+ """
96
+ Erstellt eine sichere Download-URL für einen anonymisierten Frame.
97
+
98
+ Args:
99
+ frame_id: Frame-ID
100
+ expiry_hours: Gültigkeitsdauer in Stunden
101
+
102
+ Returns:
103
+ Dict mit URL und Token-Informationen
104
+ """
105
+ token = generate_secure_token()
106
+ expiry_time = timezone.now() + timedelta(hours=expiry_hours)
107
+
108
+ # Token hashen für Datenbank-Speicherung
109
+ token_hash = hashlib.sha256(token.encode()).hexdigest()
110
+
111
+ return {
112
+ 'token': token,
113
+ 'token_hash': token_hash,
114
+ 'expires_at': expiry_time,
115
+ 'frame_id': frame_id
116
+ }
117
+
118
+
119
+ def validate_secure_token(token: str, frame_id: int) -> bool:
120
+ """
121
+ Validiert einen sicheren Download-Token.
122
+
123
+ Args:
124
+ token: Download-Token
125
+ frame_id: Frame-ID
126
+
127
+ Returns:
128
+ True wenn Token gültig ist
129
+ """
130
+ try:
131
+ from endoreg_db.models import AnonymousFrame
132
+
133
+ # Token hashen
134
+ token_hash = hashlib.sha256(token.encode()).hexdigest()
135
+
136
+ # Frame mit Token finden
137
+ frame = AnonymousFrame.objects.filter(
138
+ id=frame_id,
139
+ download_token_hash=token_hash,
140
+ download_expires_at__gt=timezone.now()
141
+ ).first()
142
+
143
+ return frame is not None
144
+
145
+ except Exception as e:
146
+ logger.error(f"Token validation error: {str(e)}")
147
+ return False
148
+
149
+
150
+ def get_frame_file_info(frame_path: str) -> Optional[Dict]:
151
+ """
152
+ Holt Dateiinformationen für einen Frame.
153
+
154
+ Args:
155
+ frame_path: Pfad zum Frame
156
+
157
+ Returns:
158
+ Dict mit Dateiinformationen oder None
159
+ """
160
+ try:
161
+ path = Path(frame_path)
162
+
163
+ if not path.exists():
164
+ return None
165
+
166
+ stat = path.stat()
167
+
168
+ return {
169
+ 'filename': path.name,
170
+ 'size_bytes': stat.st_size,
171
+ 'size_mb': round(stat.st_size / (1024 * 1024), 2),
172
+ 'created_at': datetime.fromtimestamp(stat.st_ctime),
173
+ 'modified_at': datetime.fromtimestamp(stat.st_mtime),
174
+ 'extension': path.suffix.lower(),
175
+ 'exists': True
176
+ }
177
+
178
+ except Exception as e:
179
+ logger.error(f"Error getting file info for {frame_path}: {str(e)}")
180
+ return None
181
+
182
+
183
+ def calculate_anonymization_progress(total_frames: int, processed_frames: int,
184
+ failed_frames: int) -> Dict:
185
+ """
186
+ Berechnet den Fortschritt der Anonymisierung.
187
+
188
+ Args:
189
+ total_frames: Gesamtzahl der Frames
190
+ processed_frames: Anzahl verarbeiteter Frames
191
+ failed_frames: Anzahl fehlgeschlagener Frames
192
+
193
+ Returns:
194
+ Dict mit Fortschrittsinformationen
195
+ """
196
+ if total_frames == 0:
197
+ return {
198
+ 'progress_percent': 0,
199
+ 'completed_frames': 0,
200
+ 'remaining_frames': 0,
201
+ 'success_rate': 0,
202
+ 'status': 'pending'
203
+ }
204
+
205
+ completed_frames = processed_frames + failed_frames
206
+ progress_percent = (completed_frames / total_frames) * 100
207
+ success_rate = (processed_frames / completed_frames * 100) if completed_frames > 0 else 0
208
+
209
+ # Status bestimmen
210
+ if completed_frames == 0:
211
+ status = 'pending'
212
+ elif completed_frames < total_frames:
213
+ status = 'processing'
214
+ elif failed_frames == total_frames:
215
+ status = 'failed'
216
+ else:
217
+ status = 'completed'
218
+
219
+ return {
220
+ 'progress_percent': round(progress_percent, 1),
221
+ 'completed_frames': completed_frames,
222
+ 'remaining_frames': total_frames - completed_frames,
223
+ 'success_rate': round(success_rate, 1),
224
+ 'status': status,
225
+ 'total_frames': total_frames,
226
+ 'processed_frames': processed_frames,
227
+ 'failed_frames': failed_frames
228
+ }
229
+
230
+
231
+ def estimate_processing_time(total_frames: int, anonymization_level: str) -> Dict:
232
+ """
233
+ Schätzt die Verarbeitungszeit für die Anonymisierung.
234
+
235
+ Args:
236
+ total_frames: Anzahl der zu verarbeitenden Frames
237
+ anonymization_level: Anonymisierungsgrad
238
+
239
+ Returns:
240
+ Dict mit Zeitschätzungen
241
+ """
242
+ # Geschätzte Verarbeitungszeit pro Frame (in Sekunden)
243
+ time_per_frame = {
244
+ 'minimal': 0.5,
245
+ 'faces': 1.0,
246
+ 'full': 0.8
247
+ }
248
+
249
+ base_time = time_per_frame.get(anonymization_level, 1.0)
250
+ estimated_seconds = total_frames * base_time
251
+
252
+ # Overhead für Setup und Cleanup
253
+ overhead_seconds = min(30, total_frames * 0.1)
254
+ total_seconds = estimated_seconds + overhead_seconds
255
+
256
+ return {
257
+ 'estimated_seconds': int(total_seconds),
258
+ 'estimated_minutes': round(total_seconds / 60, 1),
259
+ 'frames_per_second': round(1 / base_time, 1),
260
+ 'anonymization_level': anonymization_level
261
+ }
262
+
263
+
264
+ def cleanup_expired_tokens():
265
+ """
266
+ Bereinigt abgelaufene Download-Tokens.
267
+
268
+ Returns:
269
+ Anzahl bereinigter Tokens
270
+ """
271
+ try:
272
+ from endoreg_db.models import AnonymousFrame
273
+
274
+ # Frames mit abgelaufenen Tokens finden
275
+ expired_frames = AnonymousFrame.objects.filter(
276
+ download_expires_at__lt=timezone.now(),
277
+ download_token_hash__isnull=False
278
+ )
279
+
280
+ count = expired_frames.count()
281
+ expired_frames.update(download_token_hash=None, download_expires_at=None)
282
+
283
+ logger.info(f"Cleaned up {count} expired download tokens")
284
+ return count
285
+
286
+ except Exception as e:
287
+ logger.error(f"Error cleaning up expired tokens: {str(e)}")
288
+ return 0
289
+
290
+
291
+ def get_anonymization_statistics(video_id: Optional[int] = None) -> Dict:
292
+ """
293
+ Holt Statistiken zur Frame-Anonymisierung.
294
+
295
+ Args:
296
+ video_id: Optional - Video-ID für spezifische Statistiken
297
+
298
+ Returns:
299
+ Dict mit Statistiken
300
+ """
301
+ try:
302
+ from endoreg_db.models import FrameAnonymizationRequest, AnonymousFrame
303
+ from django.db.models import Count, Q
304
+
305
+ # Basis-Queryset
306
+ requests_qs = FrameAnonymizationRequest.objects.all()
307
+ frames_qs = AnonymousFrame.objects.all()
308
+
309
+ if video_id:
310
+ requests_qs = requests_qs.filter(video_file_id=video_id)
311
+ frames_qs = frames_qs.filter(video_file_id=video_id)
312
+
313
+ # Request-Statistiken
314
+ request_stats = requests_qs.aggregate(
315
+ total_requests=Count('id'),
316
+ pending_requests=Count('id', filter=Q(status='pending')),
317
+ processing_requests=Count('id', filter=Q(status='processing')),
318
+ completed_requests=Count('id', filter=Q(status='completed')),
319
+ failed_requests=Count('id', filter=Q(status='failed'))
320
+ )
321
+
322
+ # Frame-Statistiken
323
+ frame_stats = frames_qs.aggregate(
324
+ total_frames=Count('id'),
325
+ faces_anonymized=Count('id', filter=Q(anonymization_level='faces')),
326
+ full_anonymized=Count('id', filter=Q(anonymization_level='full')),
327
+ minimal_anonymized=Count('id', filter=Q(anonymization_level='minimal'))
328
+ )
329
+
330
+ # Disk-Space Statistiken
331
+ total_size = 0
332
+ for frame in frames_qs.values_list('anonymized_frame_path', flat=True):
333
+ file_info = get_frame_file_info(frame)
334
+ if file_info:
335
+ total_size += file_info['size_bytes']
336
+
337
+ return {
338
+ 'requests': request_stats,
339
+ 'frames': frame_stats,
340
+ 'storage': {
341
+ 'total_size_bytes': total_size,
342
+ 'total_size_mb': round(total_size / (1024 * 1024), 2)
343
+ },
344
+ 'video_id': video_id
345
+ }
346
+
347
+ except Exception as e:
348
+ logger.error(f"Error getting anonymization statistics: {str(e)}")
349
+ return {
350
+ 'requests': {},
351
+ 'frames': {},
352
+ 'storage': {},
353
+ 'error': str(e)
354
+ }
355
+
356
+
357
+ def validate_frame_path(frame_path: str) -> bool:
358
+ """
359
+ Validiert einen Frame-Pfad auf Sicherheit.
360
+
361
+ Args:
362
+ frame_path: Zu validierender Pfad
363
+
364
+ Returns:
365
+ True wenn Pfad sicher ist
366
+ """
367
+ try:
368
+ path = Path(frame_path).resolve()
369
+
370
+ # Basis-Verzeichnisse definieren
371
+ allowed_dirs = [
372
+ Path(settings.MEDIA_ROOT).resolve(),
373
+ Path(getattr(settings, 'FRAME_STORAGE_ROOT', '/tmp')).resolve()
374
+ ]
375
+
376
+ # Prüfen ob Pfad in erlaubten Verzeichnissen liegt
377
+ for allowed_dir in allowed_dirs:
378
+ try:
379
+ path.relative_to(allowed_dir)
380
+ return True
381
+ except ValueError:
382
+ continue
383
+
384
+ logger.warning(f"Frame path outside allowed directories: {frame_path}")
385
+ return False
386
+
387
+ except Exception as e:
388
+ logger.error(f"Error validating frame path {frame_path}: {str(e)}")
389
+ return False
390
+
391
+
392
+ def get_video_frame_count(video_id: int) -> int:
393
+ """
394
+ Ermittelt die Anzahl verfügbarer Frames für ein Video.
395
+
396
+ Args:
397
+ video_id: Video-ID
398
+
399
+ Returns:
400
+ Anzahl der Frames
401
+ """
402
+ try:
403
+ from endoreg_db.models import VideoFile
404
+
405
+ video = VideoFile.objects.get(id=video_id)
406
+
407
+ if not video.frame_dir:
408
+ return 0
409
+
410
+ frame_dir = Path(video.frame_dir)
411
+ if not frame_dir.exists():
412
+ return 0
413
+
414
+ # Zähle alle Bilddateien
415
+ frame_count = 0
416
+ for ext in ['*.jpg', '*.jpeg', '*.png']:
417
+ frame_count += len(list(frame_dir.glob(ext)))
418
+
419
+ return frame_count
420
+
421
+ except Exception as e:
422
+ logger.error(f"Error counting frames for video {video_id}: {str(e)}")
423
+ return 0
424
+
425
+
426
+ def format_file_size(size_bytes: int) -> str:
427
+ """
428
+ Formatiert Dateigröße in lesbares Format.
429
+
430
+ Args:
431
+ size_bytes: Größe in Bytes
432
+
433
+ Returns:
434
+ Formatierte Größe
435
+ """
436
+ for unit in ['B', 'KB', 'MB', 'GB']:
437
+ if size_bytes < 1024.0:
438
+ return f"{size_bytes:.1f} {unit}"
439
+ size_bytes /= 1024.0
440
+ return f"{size_bytes:.1f} TB"
441
+
442
+
443
+ def log_anonymization_activity(activity_type: str, details: Dict, user_id: Optional[int] = None):
444
+ """
445
+ Protokolliert Anonymisierungsaktivitäten für Audit-Zwecke.
446
+
447
+ Args:
448
+ activity_type: Art der Aktivität
449
+ details: Details der Aktivität
450
+ user_id: Optional - Benutzer-ID
451
+ """
452
+ try:
453
+ log_entry = {
454
+ 'timestamp': timezone.now().isoformat(),
455
+ 'activity_type': activity_type,
456
+ 'details': details,
457
+ 'user_id': user_id
458
+ }
459
+
460
+ logger.info(f"Anonymization activity: {activity_type}", extra=log_entry)
461
+
462
+ except Exception as e:
463
+ logger.error(f"Error logging anonymization activity: {str(e)}")
@@ -0,0 +1,153 @@
1
+ import hashlib
2
+ from pathlib import Path
3
+ from datetime import datetime, date
4
+
5
+ import os
6
+
7
+ SALT = os.getenv("DJANGO_SALT", "default_salt")
8
+ DJANGO_NAME_SALT = os.environ.get("DJANGO_SALT", "default_salt")
9
+
10
+
11
+ def get_video_hash(video_path):
12
+ """
13
+ Get the hash of a video file.
14
+ """
15
+ # Open the video file in read-binary mode:
16
+ with open(video_path, "rb") as f:
17
+ # Create the hash object, passing in the video contents for hashing:
18
+ hash_object = hashlib.sha256(f.read())
19
+ # Get the hexadecimal representation of the hash
20
+ video_hash = hash_object.hexdigest()
21
+ assert len(video_hash) <= 255, "Hash length exceeds 255 characters"
22
+
23
+ return video_hash
24
+
25
+
26
+ def get_pdf_hash(pdf_path: Path):
27
+ """
28
+ Get the hash of a pdf file.
29
+ """
30
+ pdf_hash = None
31
+
32
+ # Open the file in binary mode and read its contents
33
+ with open(pdf_path, "rb") as f:
34
+ pdf_contents = f.read()
35
+ # Create a hash object using SHA-256 algorithm
36
+
37
+ hash_object = hashlib.sha256(pdf_contents, usedforsecurity=False)
38
+ # Get the hexadecimal representation of the hash
39
+ pdf_hash = hash_object.hexdigest()
40
+ assert len(pdf_hash) <= 255, "Hash length exceeds 255 characters"
41
+
42
+ return pdf_hash
43
+
44
+
45
+ def _get_date_hash_string(date_obj: date) -> str:
46
+ # if date is datetime object, convert to date
47
+ if isinstance(date_obj, datetime):
48
+ # warnings.warn("Date is a datetime object. Converting to date object.")
49
+ date_obj = date_obj.date()
50
+ elif isinstance(date_obj, str):
51
+ # warnings.warn(f"Date is a string ({date_obj}). Converting to date object.")
52
+ date_obj = datetime.strptime(date_obj, "%Y-%m-%d").date()
53
+
54
+ assert isinstance(date_obj, date), "Date must be a date object"
55
+ # if date is 1900-01-01, make it an empty string
56
+ if date_obj == date(1900, 1, 1):
57
+ date_str = ""
58
+ else:
59
+ date_str = date_obj.strftime("%Y-%m-%d")
60
+
61
+ return date_str
62
+
63
+
64
+ def get_hash_string(
65
+ first_name: str = "",
66
+ last_name: str = "",
67
+ dob: date = date(1900, 1, 1),
68
+ center_name: str = "",
69
+ examination_date: date = date(1900, 1, 1),
70
+ endoscope_sn: str = "",
71
+ salt: str = "",
72
+ ):
73
+ """
74
+ Get the string to be hashed for a patient's first name, last name, date of birth, examination date, and endoscope serial number.
75
+ """
76
+ if not salt:
77
+ salt = SALT
78
+
79
+ examination_date_str = _get_date_hash_string(examination_date)
80
+ dob_str = _get_date_hash_string(dob)
81
+
82
+ # Concatenate the patient's first name, last name, date of birth, examination date, endoscope serial number, and salt:
83
+ hash_str = f"{first_name}{last_name}{dob_str}{center_name}{dob_str}{examination_date_str}{endoscope_sn}{salt}"
84
+ return hash_str
85
+
86
+
87
+ def get_patient_hash(
88
+ first_name: str, last_name: str, dob: date, center: str, salt: str = ""
89
+ ):
90
+ """
91
+ Get the hash of a patient's first name, last name, and date of birth.
92
+ """
93
+ # Concatenate the patient's first name, last name, date of birth, and salt:
94
+ hash_str = get_hash_string(
95
+ first_name=first_name,
96
+ last_name=last_name,
97
+ dob=dob,
98
+ center_name=center,
99
+ salt=salt,
100
+ )
101
+ # Create a hash object using SHA-256 algorithm
102
+ hash_object = hashlib.sha256(hash_str.encode())
103
+ # Get the hexadecimal representation of the hash
104
+ patient_hash = hash_object.hexdigest()
105
+
106
+ return patient_hash
107
+
108
+
109
+ def get_patient_examination_hash(
110
+ first_name: str,
111
+ last_name: str,
112
+ dob: date,
113
+ center: str,
114
+ examination_date: date,
115
+ salt: str = "",
116
+ ):
117
+ """
118
+ Get the hash of a patient's first name, last name, date of birth, and examination date.
119
+ """
120
+ # Concatenate the patient's first name, last name, date of birth, examination date, and salt:
121
+ hash_str = get_hash_string(
122
+ first_name=first_name,
123
+ last_name=last_name,
124
+ center_name=center,
125
+ dob=dob,
126
+ examination_date=examination_date,
127
+ salt=salt,
128
+ )
129
+ # Create a hash object using SHA-256 algorithm
130
+ hash_object = hashlib.sha256(hash_str.encode())
131
+ # Get the hexadecimal representation of the hash
132
+ patient_examination_hash = hash_object.hexdigest()
133
+
134
+ return patient_examination_hash
135
+
136
+
137
+ def get_examiner_hash(first_name, last_name, center_name, salt):
138
+ """
139
+ Get the hash of an examiner's first name, last name, and center name.
140
+ """
141
+ # Concatenate the examiner's first name, last name, center name, and salt:
142
+ hash_str = get_hash_string(
143
+ first_name=first_name,
144
+ last_name=last_name,
145
+ center_name=center_name,
146
+ salt=salt,
147
+ )
148
+ # Create a hash object using SHA-256 algorithm
149
+ hash_object = hashlib.sha256(hash_str.encode())
150
+ # Get the hexadecimal representation of the hash
151
+ examiner_hash = hash_object.hexdigest()
152
+
153
+ return examiner_hash
File without changes