novahiz 0.1.0

package/bundled-skills/code-reviewer/scripts/review_report_generator.py

@@ -0,0 +1,505 @@
+#!/usr/bin/env python3
+"""
+Review Report Generator
+
+Generates comprehensive code review reports by combining PR analysis
+and code quality findings into structured, actionable reports.
+
+Usage:
+    python review_report_generator.py /path/to/repo
+    python review_report_generator.py . --pr-analysis pr_results.json --quality-analysis quality_results.json
+    python review_report_generator.py /path/to/repo --format markdown --output review.md
+"""
+
+import argparse
+import json
+import os
+import subprocess
+import sys
+from datetime import datetime
+from pathlib import Path
+from typing import Dict, List, Optional, Tuple
+
+
+# Severity weights for prioritization
+SEVERITY_WEIGHTS = {
+    "critical": 100,
+    "high": 75,
+    "medium": 50,
+    "low": 25,
+    "info": 10
+}
+
+# Review verdict thresholds
+VERDICT_THRESHOLDS = {
+    "approve": {"max_critical": 0, "max_high": 0, "max_score": 100},
+    "approve_with_suggestions": {"max_critical": 0, "max_high": 2, "max_score": 85},
+    "request_changes": {"max_critical": 0, "max_high": 5, "max_score": 70},
+    "block": {"max_critical": float("inf"), "max_high": float("inf"), "max_score": 0}
+}
+
+
+def load_json_file(filepath: str) -> Optional[Dict]:
+    """Load JSON file if it exists."""
+    try:
+        with open(filepath, "r") as f:
+            return json.load(f)
+    except (FileNotFoundError, json.JSONDecodeError):
+        return None
+
+
+def run_pr_analyzer(repo_path: Path) -> Dict:
+    """Run pr_analyzer.py and return results."""
+    script_path = Path(__file__).parent / "pr_analyzer.py"
+    if not script_path.exists():
+        return {"status": "error", "message": "pr_analyzer.py not found"}
+
+    try:
+        result = subprocess.run(
+            [sys.executable, str(script_path), str(repo_path), "--json"],
+            capture_output=True,
+            text=True,
+            timeout=120
+        )
+        if result.returncode == 0:
+            return json.loads(result.stdout)
+        return {"status": "error", "message": result.stderr}
+    except Exception as e:
+        return {"status": "error", "message": str(e)}
+
+
+def run_quality_checker(repo_path: Path) -> Dict:
+    """Run code_quality_checker.py and return results."""
+    script_path = Path(__file__).parent / "code_quality_checker.py"
+    if not script_path.exists():
+        return {"status": "error", "message": "code_quality_checker.py not found"}
+
+    try:
+        result = subprocess.run(
+            [sys.executable, str(script_path), str(repo_path), "--json"],
+            capture_output=True,
+            text=True,
+            timeout=300
+        )
+        if result.returncode == 0:
+            return json.loads(result.stdout)
+        return {"status": "error", "message": result.stderr}
+    except Exception as e:
+        return {"status": "error", "message": str(e)}
+
+
+def calculate_review_score(pr_analysis: Dict, quality_analysis: Dict) -> int:
+    """Calculate overall review score (0-100)."""
+    score = 100
+
+    # Deduct for PR risks
+    if "risks" in pr_analysis:
+        risks = pr_analysis["risks"]
+        score -= len(risks.get("critical", [])) * 15
+        score -= len(risks.get("high", [])) * 10
+        score -= len(risks.get("medium", [])) * 5
+        score -= len(risks.get("low", [])) * 2
+
+    # Deduct for code quality issues
+    if "issues" in quality_analysis:
+        issues = quality_analysis["issues"]
+        score -= len([i for i in issues if i.get("severity") == "critical"]) * 12
+        score -= len([i for i in issues if i.get("severity") == "high"]) * 8
+        score -= len([i for i in issues if i.get("severity") == "medium"]) * 4
+        score -= len([i for i in issues if i.get("severity") == "low"]) * 1
+
+    # Deduct for complexity
+    if "summary" in pr_analysis:
+        complexity = pr_analysis["summary"].get("complexity_score", 0)
+        if complexity > 7:
+            score -= 10
+        elif complexity > 5:
+            score -= 5
+
+    return max(0, min(100, score))
+
+
+def determine_verdict(score: int, critical_count: int, high_count: int) -> Tuple[str, str]:
+    """Determine review verdict based on score and issue counts."""
+    if critical_count > 0:
+        return "block", "Critical issues must be resolved before merge"
+
+    if score >= 90 and high_count == 0:
+        return "approve", "Code meets quality standards"
+
+    if score >= 75 and high_count <= 2:
+        return "approve_with_suggestions", "Minor improvements recommended"
+
+    if score >= 50:
+        return "request_changes", "Several issues need to be addressed"
+
+    return "block", "Significant issues prevent approval"
+
+
+def generate_findings_list(pr_analysis: Dict, quality_analysis: Dict) -> List[Dict]:
+    """Combine and prioritize all findings."""
+    findings = []
+
+    # Add PR risk findings
+    if "risks" in pr_analysis:
+        for severity, items in pr_analysis["risks"].items():
+            for item in items:
+                findings.append({
+                    "source": "pr_analysis",
+                    "severity": severity,
+                    "category": item.get("name", "unknown"),
+                    "message": item.get("message", ""),
+                    "file": item.get("file", ""),
+                    "count": item.get("count", 1)
+                })
+
+    # Add code quality findings
+    if "issues" in quality_analysis:
+        for issue in quality_analysis["issues"]:
+            findings.append({
+                "source": "quality_analysis",
+                "severity": issue.get("severity", "medium"),
+                "category": issue.get("type", "unknown"),
+                "message": issue.get("message", ""),
+                "file": issue.get("file", ""),
+                "line": issue.get("line", 0)
+            })
+
+    # Sort by severity weight
+    findings.sort(
+        key=lambda x: -SEVERITY_WEIGHTS.get(x["severity"], 0)
+    )
+
+    return findings
+
+
+def generate_action_items(findings: List[Dict]) -> List[Dict]:
+    """Generate prioritized action items from findings."""
+    action_items = []
+    seen_categories = set()
+
+    for finding in findings:
+        category = finding["category"]
+        severity = finding["severity"]
+
+        # Group similar issues
+        if category in seen_categories and severity not in ["critical", "high"]:
+            continue
+
+        action = {
+            "priority": "P0" if severity == "critical" else "P1" if severity == "high" else "P2",
+            "action": get_action_for_category(category, finding),
+            "severity": severity,
+            "files_affected": [finding["file"]] if finding.get("file") else []
+        }
+        action_items.append(action)
+        seen_categories.add(category)
+
+    return action_items[:15]  # Top 15 actions
+
+
+def get_action_for_category(category: str, finding: Dict) -> str:
+    """Get actionable recommendation for issue category."""
+    actions = {
+        "hardcoded_secrets": "Remove hardcoded credentials and use environment variables or a secrets manager",
+        "sql_concatenation": "Use parameterized queries to prevent SQL injection",
+        "debugger": "Remove debugger statements before merging",
+        "console_log": "Remove or replace console statements with proper logging",
+        "todo_fixme": "Address TODO/FIXME comments or create tracking issues",
+        "disable_eslint": "Address the underlying issue instead of disabling lint rules",
+        "any_type": "Replace 'any' types with proper type definitions",
+        "long_function": "Break down function into smaller, focused units",
+        "god_class": "Split class into smaller, single-responsibility classes",
+        "too_many_params": "Use parameter objects or builder pattern",
+        "deep_nesting": "Refactor using early returns, guard clauses, or extraction",
+        "high_complexity": "Reduce cyclomatic complexity through refactoring",
+        "missing_error_handling": "Add proper error handling and recovery logic",
+        "duplicate_code": "Extract duplicate code into shared functions",
+        "magic_numbers": "Replace magic numbers with named constants",
+        "large_file": "Consider splitting into multiple smaller modules"
+    }
+    return actions.get(category, f"Review and address: {finding.get('message', category)}")
+
+
+def format_markdown_report(report: Dict) -> str:
+    """Generate markdown-formatted report."""
+    lines = []
+
+    # Header
+    lines.append("# Code Review Report")
+    lines.append("")
+    lines.append(f"**Generated:** {report['metadata']['generated_at']}")
+    lines.append(f"**Repository:** {report['metadata']['repository']}")
+    lines.append("")
+
+    # Executive Summary
+    lines.append("## Executive Summary")
+    lines.append("")
+    summary = report["summary"]
+    verdict = summary["verdict"]
+    verdict_emoji = {
+        "approve": "✅",
+        "approve_with_suggestions": "✅",
+        "request_changes": "⚠️",
+        "block": "❌"
+    }.get(verdict, "❓")
+
+    lines.append(f"**Verdict:** {verdict_emoji} {verdict.upper().replace('_', ' ')}")
+    lines.append(f"**Score:** {summary['score']}/100")
+    lines.append(f"**Rationale:** {summary['rationale']}")
+    lines.append("")
+
+    # Issue Counts
+    lines.append("### Issue Summary")
+    lines.append("")
+    lines.append("| Severity | Count |")
+    lines.append("|----------|-------|")
+    for severity in ["critical", "high", "medium", "low"]:
+        count = summary["issue_counts"].get(severity, 0)
+        lines.append(f"| {severity.capitalize()} | {count} |")
+    lines.append("")
+
+    # PR Statistics (if available)
+    if "pr_summary" in report:
+        pr = report["pr_summary"]
+        lines.append("### Change Statistics")
+        lines.append("")
+        lines.append(f"- **Files Changed:** {pr.get('files_changed', 'N/A')}")
+        lines.append(f"- **Lines Added:** +{pr.get('total_additions', 0)}")
+        lines.append(f"- **Lines Removed:** -{pr.get('total_deletions', 0)}")
+        lines.append(f"- **Complexity:** {pr.get('complexity_label', 'N/A')}")
+        lines.append("")
+
+    # Action Items
+    if report.get("action_items"):
+        lines.append("## Action Items")
+        lines.append("")
+        for i, item in enumerate(report["action_items"], 1):
+            priority = item["priority"]
+            emoji = "🔴" if priority == "P0" else "🟠" if priority == "P1" else "🟡"
+            lines.append(f"{i}. {emoji} **[{priority}]** {item['action']}")
+            if item.get("files_affected"):
+                lines.append(f"   - Files: {', '.join(item['files_affected'][:3])}")
+        lines.append("")
+
+    # Critical Findings
+    critical_findings = [f for f in report.get("findings", []) if f["severity"] == "critical"]
+    if critical_findings:
+        lines.append("## Critical Issues (Must Fix)")
+        lines.append("")
+        for finding in critical_findings:
+            lines.append(f"- **{finding['category']}** in `{finding.get('file', 'unknown')}`")
+            lines.append(f"  - {finding['message']}")
+        lines.append("")
+
+    # High Priority Findings
+    high_findings = [f for f in report.get("findings", []) if f["severity"] == "high"]
+    if high_findings:
+        lines.append("## High Priority Issues")
+        lines.append("")
+        for finding in high_findings[:10]:
+            lines.append(f"- **{finding['category']}** in `{finding.get('file', 'unknown')}`")
+            lines.append(f"  - {finding['message']}")
+        lines.append("")
+
+    # Review Order (if available)
+    if "review_order" in report:
+        lines.append("## Suggested Review Order")
+        lines.append("")
+        for i, filepath in enumerate(report["review_order"][:10], 1):
+            lines.append(f"{i}. `{filepath}`")
+        lines.append("")
+
+    # Footer
+    lines.append("---")
+    lines.append("*Generated by Code Reviewer*")
+
+    return "\n".join(lines)
+
+
+def format_text_report(report: Dict) -> str:
+    """Generate plain text report."""
+    lines = []
+
+    lines.append("=" * 60)
+    lines.append("CODE REVIEW REPORT")
+    lines.append("=" * 60)
+    lines.append("")
+    lines.append(f"Generated: {report['metadata']['generated_at']}")
+    lines.append(f"Repository: {report['metadata']['repository']}")
+    lines.append("")
+
+    summary = report["summary"]
+    verdict = summary["verdict"].upper().replace("_", " ")
+    lines.append(f"VERDICT: {verdict}")
+    lines.append(f"SCORE: {summary['score']}/100")
+    lines.append(f"RATIONALE: {summary['rationale']}")
+    lines.append("")
+
+    lines.append("--- ISSUE SUMMARY ---")
+    for severity in ["critical", "high", "medium", "low"]:
+        count = summary["issue_counts"].get(severity, 0)
+        lines.append(f"  {severity.capitalize()}: {count}")
+    lines.append("")
+
+    if report.get("action_items"):
+        lines.append("--- ACTION ITEMS ---")
+        for i, item in enumerate(report["action_items"][:10], 1):
+            lines.append(f"  {i}. [{item['priority']}] {item['action']}")
+        lines.append("")
+
+    critical = [f for f in report.get("findings", []) if f["severity"] == "critical"]
+    if critical:
+        lines.append("--- CRITICAL ISSUES ---")
+        for f in critical:
+            lines.append(f"  [{f.get('file', 'unknown')}] {f['message']}")
+        lines.append("")
+
+    lines.append("=" * 60)
+
+    return "\n".join(lines)
+
+
+def generate_report(
+    repo_path: Path,
+    pr_analysis: Optional[Dict] = None,
+    quality_analysis: Optional[Dict] = None
+) -> Dict:
+    """Generate comprehensive review report."""
+    # Run analyses if not provided
+    if pr_analysis is None:
+        pr_analysis = run_pr_analyzer(repo_path)
+
+    if quality_analysis is None:
+        quality_analysis = run_quality_checker(repo_path)
+
+    # Generate findings
+    findings = generate_findings_list(pr_analysis, quality_analysis)
+
+    # Count issues by severity
+    issue_counts = {
+        "critical": len([f for f in findings if f["severity"] == "critical"]),
+        "high": len([f for f in findings if f["severity"] == "high"]),
+        "medium": len([f for f in findings if f["severity"] == "medium"]),
+        "low": len([f for f in findings if f["severity"] == "low"])
+    }
+
+    # Calculate score and verdict
+    score = calculate_review_score(pr_analysis, quality_analysis)
+    verdict, rationale = determine_verdict(
+        score,
+        issue_counts["critical"],
+        issue_counts["high"]
+    )
+
+    # Generate action items
+    action_items = generate_action_items(findings)
+
+    # Build report
+    report = {
+        "metadata": {
+            "generated_at": datetime.now().isoformat(),
+            "repository": str(repo_path),
+            "version": "1.0.0"
+        },
+        "summary": {
+            "score": score,
+            "verdict": verdict,
+            "rationale": rationale,
+            "issue_counts": issue_counts
+        },
+        "findings": findings,
+        "action_items": action_items
+    }
+
+    # Add PR summary if available
+    if pr_analysis.get("status") == "analyzed":
+        report["pr_summary"] = pr_analysis.get("summary", {})
+        report["review_order"] = pr_analysis.get("review_order", [])
+
+    # Add quality summary if available
+    if quality_analysis.get("status") == "analyzed":
+        report["quality_summary"] = quality_analysis.get("summary", {})
+
+    return report
+
+
+def main():
+    parser = argparse.ArgumentParser(
+        description="Generate comprehensive code review reports"
+    )
+    parser.add_argument(
+        "repo_path",
+        nargs="?",
+        default=".",
+        help="Path to repository (default: current directory)"
+    )
+    parser.add_argument(
+        "--pr-analysis",
+        help="Path to pre-computed PR analysis JSON"
+    )
+    parser.add_argument(
+        "--quality-analysis",
+        help="Path to pre-computed quality analysis JSON"
+    )
+    parser.add_argument(
+        "--format", "-f",
+        choices=["text", "markdown", "json"],
+        default="text",
+        help="Output format (default: text)"
+    )
+    parser.add_argument(
+        "--output", "-o",
+        help="Write output to file"
+    )
+    parser.add_argument(
+        "--json",
+        action="store_true",
+        help="Output as JSON (shortcut for --format json)"
+    )
+
+    args = parser.parse_args()
+
+    repo_path = Path(args.repo_path).resolve()
+    if not repo_path.exists():
+        print(f"Error: Path does not exist: {repo_path}", file=sys.stderr)
+        sys.exit(1)
+
+    # Load pre-computed analyses if provided
+    pr_analysis = None
+    quality_analysis = None
+
+    if args.pr_analysis:
+        pr_analysis = load_json_file(args.pr_analysis)
+        if not pr_analysis:
+            print(f"Warning: Could not load PR analysis from {args.pr_analysis}")
+
+    if args.quality_analysis:
+        quality_analysis = load_json_file(args.quality_analysis)
+        if not quality_analysis:
+            print(f"Warning: Could not load quality analysis from {args.quality_analysis}")
+
+    # Generate report
+    report = generate_report(repo_path, pr_analysis, quality_analysis)
+
+    # Format output
+    output_format = "json" if args.json else args.format
+
+    if output_format == "json":
+        output = json.dumps(report, indent=2)
+    elif output_format == "markdown":
+        output = format_markdown_report(report)
+    else:
+        output = format_text_report(report)
+
+    # Write or print output
+    if args.output:
+        with open(args.output, "w") as f:
+            f.write(output)
+        print(f"Report written to {args.output}")
+    else:
+        print(output)
+
+
+if __name__ == "__main__":
+    main()

package/bundled-skills/code-understand/SKILL.md

@@ -0,0 +1,90 @@
+---
+name: code-understand
+description: >
+  Build a ranked, citation-backed focus map of a codebase — the files and symbols an
+  architecture actually hangs on — using CodeGraph when available and a dependency-free
+  builtin (regex AST extraction + `rg` cross-file references) otherwise. Use this any time
+  you (the coding agent) need to orient in an unfamiliar or large codebase before making a
+  change: the user says "help me understand this codebase", "what's load-bearing here",
+  "what would break if I change X", "who calls this", "map out this project's architecture",
+  or you're about to touch code you haven't read yet and want to know what matters before
+  scanning everything by hand. This is the same extractor `wiki-update` Step 3b uses
+  internally — this skill exposes it directly so any agent session can call it on demand,
+  not just during a wiki sync.
+---
+
+# Code Understand — On-Demand Architecture Focus Map
+
+You are about to work in a codebase you don't fully know yet. Instead of grepping around or
+reading files at random, ask the local extractor for a **focus map**: the ranked symbols the
+architecture hangs on, each with a `file:line` citation and evidence type. Read only what it
+points at — this is a map, not a substitute for reading the actual code it cites.
+
+## When to reach for this
+
+- Before editing an unfamiliar module — see what calls it and what it calls before changing
+  its shape.
+- The user asks "how does X work", "what's the impact of changing Y", "who else uses this
+  function" for a codebase, not the wiki.
+- You're about to do a large refactor and want a ranked list of load-bearing files instead of
+  reading the whole tree.
+- You already have a diff or a set of changed files and want to know their blast radius before
+  finishing the change.
+
+Not for: summarizing what a project *does* for the wiki (that's `wiki-update` Step 3b, which
+calls this same command as part of a bigger sync flow) — use this skill directly only when you
+need the focus map for your own immediate work, not to persist knowledge.
+
+## Running it
+
+```bash
+obsidian-wiki code-understand --project <dir> [--backend auto|builtin|codegraph] \
+    [--changed <file>...] [--since <sha>] [--max-symbols N] [--pretty]
+```
+
+- `--project` — defaults to the current directory.
+- No `--changed`/`--since` — seeds from every tracked file (full-project scan).
+- `--changed <file>` (repeatable) — seed from specific files you already know are relevant
+  (e.g. files in the diff you're about to make).
+- `--since <sha>` — seed from everything changed since a git ref (e.g. `--since HEAD~5` or a
+  base branch).
+- `--backend` — `auto` (default) uses CodeGraph when installed, falls back to the builtin
+  extractor otherwise; force `builtin` for the dependency-free path, or `codegraph` to require
+  the enhanced backend (fails loudly if it's not installed rather than silently degrading).
+- `--max-symbols` — cap the focus map size (default 50); keep this small for a quick
+  orientation pass, raise it for a thorough one.
+
+**GUARD:** if the command is unavailable or errors, skip it and fall back to your normal
+exploration (grep/read) — this is an accelerant, not a dependency. Don't block work on it.
+
+## Reading the output
+
+1. **Evidence type matters.** When `backend: codegraph`, focus-map entries are structural
+   facts (real call-graph edges) — cite them directly. When `backend: builtin`, `defines`/
+   `imports`/`changed-file` entries are facts, but `rg-reference` entries are text-match
+   evidence only — open the file and confirm before treating it as a real relationship.
+2. **Open what it cites, nothing else first.** The focus map tells you *where* to read; it
+   never contains source bodies. Go read those `file:line` locations before forming an opinion
+   on the architecture.
+3. **Cite it in your own output.** If you explain the architecture back to the user or write
+   it into a PR description/commit message, keep the `(file:lines)` citations from the focus
+   map or from the source you opened — don't assert structure without a pointer to it.
+4. **It's a cache, not a deliverable.** Never write the raw JSON or `.codegraph/` into the
+   wiki vault, a PR description, or committed docs — it's a disposable sidecar in the project
+   repo (git-ignored). Re-run it fresh next time rather than treating old output as durable.
+
+## If CodeGraph isn't installed
+
+`auto`/`builtin` still work with zero setup (uses the regex AST extractor + `rg`). If you want
+the enhanced cross-file call-graph evidence and the user is fine with installing something:
+
+```bash
+npm install -g @colbymchenry/codegraph
+```
+
+or point `CODE_UNDERSTANDING_CODEGRAPH_BIN` at an existing binary. Never install without the
+user's go-ahead — ask first, then re-run the command.
+
+Check `obsidian-wiki doctor --project <dir>` for the `code-understanding.*` capability lines
+(`builtin`, `rg`, `codegraph`, `codegraph-index`, `codegraph-fresh`, `codegraph-gitignore`) to
+see what's available before deciding which backend to request explicitly.