molstar 4.3.0 → 4.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1384) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  8. package/lib/apps/docking-viewer/index.html +36 -36
  9. package/lib/apps/docking-viewer/viewport.d.ts +1 -1
  10. package/lib/apps/docking-viewer/viewport.js +2 -1
  11. package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
  12. package/lib/apps/mesoscale-explorer/app.js +12 -1
  13. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  14. package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
  15. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  16. package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
  17. package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  18. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
  19. package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  20. package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
  21. package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
  22. package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  23. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
  24. package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  25. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
  26. package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
  27. package/lib/apps/mesoscale-explorer/data/state.js +83 -8
  28. package/lib/apps/mesoscale-explorer/index.html +106 -101
  29. package/lib/apps/mesoscale-explorer/style.scss +66 -33
  30. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  31. package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
  32. package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  33. package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
  34. package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  35. package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
  36. package/lib/apps/viewer/app.d.ts +10 -4
  37. package/lib/apps/viewer/app.js +28 -0
  38. package/lib/apps/viewer/embedded.html +52 -52
  39. package/lib/apps/viewer/index.html +129 -129
  40. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  41. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  42. package/lib/cli/cifschema/util/generate.js +12 -12
  43. package/lib/cli/lipid-params/index.js +9 -9
  44. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
  45. package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
  46. package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
  48. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  49. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
  50. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  51. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
  52. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  53. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
  54. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  55. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
  56. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
  57. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  58. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
  59. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  60. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
  61. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
  62. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
  63. package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
  64. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  65. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
  66. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  67. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
  68. package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  69. package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
  70. package/lib/commonjs/apps/viewer/app.d.ts +10 -4
  71. package/lib/commonjs/apps/viewer/app.js +28 -0
  72. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  73. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  74. package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
  75. package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
  76. package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
  77. package/lib/commonjs/cli/cifschema/util/generate.js +13 -14
  78. package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
  79. package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
  80. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  81. package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
  82. package/lib/commonjs/cli/structure-info/helpers.js +2 -3
  83. package/lib/commonjs/cli/structure-info/model.js +11 -12
  84. package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
  85. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  86. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
  87. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  88. package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
  89. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  90. package/lib/commonjs/examples/lighting/index.js +2 -1
  91. package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
  92. package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
  93. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
  94. package/lib/commonjs/examples/task.js +6 -6
  95. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
  96. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
  97. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
  98. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
  99. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  100. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
  101. package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
  102. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
  103. package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
  104. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  105. package/lib/commonjs/extensions/anvil/behavior.js +2 -2
  106. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  107. package/lib/commonjs/extensions/anvil/representation.js +3 -3
  108. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
  109. package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
  110. package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
  111. package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
  112. package/lib/commonjs/extensions/assembly-symmetry/prop.js +27 -27
  113. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  114. package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
  115. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  116. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
  117. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  118. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
  119. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +7 -7
  120. package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
  121. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  122. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
  123. package/lib/commonjs/extensions/g3d/data.js +2 -3
  124. package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
  125. package/lib/commonjs/extensions/g3d/model.js +5 -5
  126. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
  127. package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
  128. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  129. package/lib/commonjs/extensions/meshes/examples.js +9 -9
  130. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -6
  131. package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
  132. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
  133. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
  134. package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
  135. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
  136. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
  137. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
  138. package/lib/commonjs/extensions/model-export/export.js +2 -2
  139. package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
  140. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
  141. package/lib/commonjs/extensions/mp4-export/encoder.js +1 -2
  142. package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
  143. package/lib/commonjs/extensions/mvs/camera.js +4 -5
  144. package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
  145. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -32
  146. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
  147. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
  148. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
  149. package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
  150. package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
  151. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
  152. package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
  153. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
  154. package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
  155. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
  156. package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
  157. package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
  158. package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
  159. package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
  160. package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
  161. package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
  162. package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
  163. package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
  164. package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
  165. package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
  166. package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
  167. package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
  168. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  169. package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
  170. package/lib/commonjs/extensions/mvs/load.js +1 -2
  171. package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
  172. package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
  173. package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
  174. package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
  175. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -8
  176. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
  177. package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
  178. package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
  179. package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
  180. package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
  181. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  182. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
  183. package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
  184. package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
  185. package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
  186. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +2 -3
  187. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +2 -2
  188. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +6 -6
  189. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +3 -3
  190. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +2 -2
  191. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
  192. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
  193. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
  194. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
  195. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
  196. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
  197. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
  198. package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
  199. package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
  200. package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
  201. package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
  202. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +9 -1
  203. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
  204. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  205. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  206. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  207. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  208. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -0
  209. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
  210. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
  211. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  212. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +7 -2
  213. package/lib/commonjs/mol-canvas3d/util.js +3 -4
  214. package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
  215. package/lib/commonjs/mol-data/db/column.d.ts +1 -1
  216. package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
  217. package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
  218. package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
  219. package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
  220. package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
  221. package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
  222. package/lib/commonjs/mol-data/int/linked-index.js +1 -2
  223. package/lib/commonjs/mol-data/util/array.js +5 -6
  224. package/lib/commonjs/mol-data/util/buckets.js +1 -2
  225. package/lib/commonjs/mol-data/util/combination.js +2 -2
  226. package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
  227. package/lib/commonjs/mol-data/util/grouping.js +2 -3
  228. package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
  229. package/lib/commonjs/mol-data/util/sort.js +5 -6
  230. package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
  231. package/lib/commonjs/mol-geo/geometry/base.js +3 -3
  232. package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
  233. package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
  234. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
  235. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
  236. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
  237. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
  238. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
  239. package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
  240. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
  241. package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
  242. package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
  243. package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
  244. package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
  245. package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
  246. package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
  247. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
  248. package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
  249. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
  250. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
  251. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
  252. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
  253. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
  254. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  255. package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
  256. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  257. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
  258. package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
  259. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
  260. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
  261. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
  262. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
  263. package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
  264. package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
  265. package/lib/commonjs/mol-geo/primitive/box.js +3 -4
  266. package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
  267. package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
  268. package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
  269. package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
  270. package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
  271. package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
  272. package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
  273. package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
  274. package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
  275. package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
  276. package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
  277. package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
  278. package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
  279. package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
  280. package/lib/commonjs/mol-geo/primitive/star.js +2 -2
  281. package/lib/commonjs/mol-geo/primitive/tetrahedron.js +3 -3
  282. package/lib/commonjs/mol-geo/primitive/torus.js +2 -2
  283. package/lib/commonjs/mol-geo/primitive/wedge.js +3 -4
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  1383. package/lib/servers/volume/config.js +5 -5
  1384. package/package.json +197 -196
@@ -4,6 +4,7 @@
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
6
6
  import { Color, ColorListEntry } from './color';
7
+ import { ColorListName } from './lists';
7
8
  import { NumberArray } from '../../mol-util/type-helpers';
8
9
  import { ScaleLegend } from '../legend';
9
10
  export interface ColorScale {
@@ -21,7 +22,7 @@ export interface ColorScale {
21
22
  export declare const DefaultColorScaleProps: {
22
23
  domain: [number, number];
23
24
  reverse: boolean;
24
- listOrName: ColorListEntry[] | "orange-red" | "purple-blue" | "blue-purple" | "oranges" | "blue-green" | "yellow-orange-brown" | "yellow-green" | "reds" | "red-purple" | "greens" | "yellow-green-blue" | "purples" | "green-blue" | "greys" | "yellow-orange-red" | "purple-red" | "blues" | "purple-blue-green" | "spectral" | "red-yellow-green" | "red-blue" | "pink-yellow-green" | "purple-green" | "red-yellow-blue" | "brown-white-green" | "red-grey" | "orange-purple" | "set-2" | "accent" | "set-1" | "set-3" | "dark-2" | "paired" | "pastel-2" | "pastel-1" | "many-distinct" | "magma" | "inferno" | "plasma" | "viridis" | "cividis" | "twilight" | "turbo" | "rainbow" | "red-white-blue";
25
+ listOrName: ColorListEntry[] | ColorListName;
25
26
  minLabel: string | undefined;
26
27
  maxLabel: string | undefined;
27
28
  };
@@ -8,7 +8,7 @@
8
8
  * Copyright (c) 2011-2018, Gregor Aisch, BSD license
9
9
  */
10
10
  Object.defineProperty(exports, "__esModule", { value: true });
11
- exports.Hcl = void 0;
11
+ exports.Hcl = Hcl;
12
12
  const misc_1 = require("../../../mol-math/misc");
13
13
  const lab_1 = require("./lab");
14
14
  /**
@@ -23,7 +23,6 @@ const lab_1 = require("./lab");
23
23
  function Hcl() {
24
24
  return Hcl.zero();
25
25
  }
26
- exports.Hcl = Hcl;
27
26
  (function (Hcl) {
28
27
  function zero() {
29
28
  const out = [0.1, 0.0, 0.0];
@@ -8,7 +8,7 @@
8
8
  * Copyright (c) 2011-2018, Gregor Aisch, BSD license
9
9
  */
10
10
  Object.defineProperty(exports, "__esModule", { value: true });
11
- exports.Lab = void 0;
11
+ exports.Lab = Lab;
12
12
  const color_1 = require("../color");
13
13
  const hcl_1 = require("./hcl");
14
14
  const misc_1 = require("../../../mol-math/misc");
@@ -25,7 +25,6 @@ const interpolate_1 = require("../../../mol-math/interpolate");
25
25
  function Lab() {
26
26
  return Lab.zero();
27
27
  }
28
- exports.Lab = Lab;
29
28
  (function (Lab) {
30
29
  function zero() {
31
30
  const out = [0.1, 0.0, 0.0];
@@ -7,7 +7,6 @@
7
7
  *
8
8
  * Adapted from LiteMol
9
9
  */
10
- /// <reference types="node" />
11
10
  import { RuntimeContext, Task } from '../mol-task';
12
11
  import { Asset, AssetManager } from './assets';
13
12
  export declare enum DataCompressionMethod {
@@ -9,7 +9,13 @@
9
9
  * Adapted from LiteMol
10
10
  */
11
11
  Object.defineProperty(exports, "__esModule", { value: true });
12
- exports.ajaxGetMany = exports.setFSModule = exports.ajaxGet = exports.readFromFile = exports.readUint8ArrayFromFile = exports.readStringFromFile = exports.DataCompressionMethod = void 0;
12
+ exports.DataCompressionMethod = void 0;
13
+ exports.readStringFromFile = readStringFromFile;
14
+ exports.readUint8ArrayFromFile = readUint8ArrayFromFile;
15
+ exports.readFromFile = readFromFile;
16
+ exports.ajaxGet = ajaxGet;
17
+ exports.setFSModule = setFSModule;
18
+ exports.ajaxGetMany = ajaxGetMany;
13
19
  const utf8_1 = require("../mol-io/common/utf8");
14
20
  const mol_task_1 = require("../mol-task");
15
21
  const assets_1 = require("./assets");
@@ -24,21 +30,17 @@ var DataCompressionMethod;
24
30
  function readStringFromFile(file) {
25
31
  return readFromFileInternal(file, 'string');
26
32
  }
27
- exports.readStringFromFile = readStringFromFile;
28
33
  function readUint8ArrayFromFile(file) {
29
34
  return readFromFileInternal(file, 'binary');
30
35
  }
31
- exports.readUint8ArrayFromFile = readUint8ArrayFromFile;
32
36
  function readFromFile(file, type) {
33
37
  return readFromFileInternal(file, type);
34
38
  }
35
- exports.readFromFile = readFromFile;
36
39
  function ajaxGet(params) {
37
40
  if (typeof params === 'string')
38
41
  return ajaxGetInternal(params, params, 'string');
39
42
  return ajaxGetInternal(params.title, params.url, params.type || 'string', params.body, params.headers);
40
43
  }
41
- exports.ajaxGet = ajaxGet;
42
44
  function isDone(data) {
43
45
  if (!nodejs_shims_1.RUNNING_IN_NODEJS && data instanceof FileReader) { // FileReader is not available in Node.js
44
46
  return data.readyState === FileReader.DONE;
@@ -282,7 +284,6 @@ function getFS() {
282
284
  function setFSModule(fs) {
283
285
  _fs = fs;
284
286
  }
285
- exports.setFSModule = setFSModule;
286
287
  /** Alternative implementation of ajaxGetInternal (because xhr2 does not support file:// protocol) */
287
288
  function ajaxGetInternal_file_NodeJS(title, url, type, body, headers) {
288
289
  if (!nodejs_shims_1.RUNNING_IN_NODEJS)
@@ -331,7 +332,6 @@ async function ajaxGetMany(ctx, assetManager, sources, maxConcurrency) {
331
332
  }
332
333
  return slots;
333
334
  }
334
- exports.ajaxGetMany = ajaxGetMany;
335
335
  function _filterRemoveIndex(_, i) {
336
336
  return this !== i;
337
337
  }
@@ -5,11 +5,11 @@
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.getFormattedTime = exports.dateToUtcString = void 0;
8
+ exports.dateToUtcString = dateToUtcString;
9
+ exports.getFormattedTime = getFormattedTime;
9
10
  function dateToUtcString(date) {
10
11
  return date.toISOString().replace(/T/, ' ').replace(/\..+/, '');
11
12
  }
12
- exports.dateToUtcString = dateToUtcString;
13
13
  function getFormattedTime() {
14
14
  const today = new Date();
15
15
  const y = today.getFullYear();
@@ -20,4 +20,3 @@ function getFormattedTime() {
20
20
  const s = today.getSeconds();
21
21
  return y + '-' + m + '-' + d + '-' + h + '-' + mi + '-' + s;
22
22
  }
23
- exports.getFormattedTime = getFormattedTime;
@@ -5,7 +5,13 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.consoleStats = exports.removeConsoleStatsProvider = exports.addConsoleStatsProvider = exports.setTimingMode = exports.setDebugMode = exports.setProductionMode = exports.isTimingMode = exports.isDebugMode = exports.isProductionMode = void 0;
8
+ exports.isTimingMode = exports.isDebugMode = exports.isProductionMode = void 0;
9
+ exports.setProductionMode = setProductionMode;
10
+ exports.setDebugMode = setDebugMode;
11
+ exports.setTimingMode = setTimingMode;
12
+ exports.addConsoleStatsProvider = addConsoleStatsProvider;
13
+ exports.removeConsoleStatsProvider = removeConsoleStatsProvider;
14
+ exports.consoleStats = consoleStats;
9
15
  /**
10
16
  * on node `process.env.NODE_ENV` is available, in webpack build it is automatically set
11
17
  * by the DefinePlugin to the webpack `mode` value
@@ -42,32 +48,26 @@ function setProductionMode(value) {
42
48
  if (typeof value !== 'undefined')
43
49
  exports.isProductionMode = isProductionMode = value;
44
50
  }
45
- exports.setProductionMode = setProductionMode;
46
51
  function setDebugMode(value) {
47
52
  if (typeof value !== 'undefined')
48
53
  exports.isDebugMode = isDebugMode = value;
49
54
  }
50
- exports.setDebugMode = setDebugMode;
51
55
  function setTimingMode(value) {
52
56
  if (typeof value !== 'undefined')
53
57
  exports.isTimingMode = isTimingMode = value;
54
58
  }
55
- exports.setTimingMode = setTimingMode;
56
59
  const consoleStatsProviders = [];
57
60
  function addConsoleStatsProvider(p) {
58
61
  if (!consoleStatsProviders.includes(p))
59
62
  consoleStatsProviders.push(p);
60
63
  }
61
- exports.addConsoleStatsProvider = addConsoleStatsProvider;
62
64
  function removeConsoleStatsProvider(p) {
63
65
  const idx = consoleStatsProviders.indexOf(p);
64
66
  if (idx !== -1)
65
67
  consoleStatsProviders.splice(idx, 1);
66
68
  }
67
- exports.removeConsoleStatsProvider = removeConsoleStatsProvider;
68
69
  function consoleStats() {
69
70
  for (const p of consoleStatsProviders) {
70
71
  p();
71
72
  }
72
73
  }
73
- exports.consoleStats = consoleStats;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.download = void 0;
8
+ exports.download = download;
9
9
  function openUrl(url) {
10
10
  const opened = window.open(url, '_blank');
11
11
  if (!opened) {
@@ -69,4 +69,3 @@ function download(data, downloadName = 'download') {
69
69
  }
70
70
  }
71
71
  }
72
- exports.download = download;
@@ -6,7 +6,7 @@
6
6
  * @author Russell Parker <russell@benchling.com>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.getFileNameInfo = void 0;
9
+ exports.getFileNameInfo = getFileNameInfo;
10
10
  // TODO only support compressed files for which uncompression support is available???
11
11
  // TODO store globally with decompression plugins?
12
12
  const COMPRESSED_EXT_LIST = ['gz', 'zip'];
@@ -36,4 +36,3 @@ function getFileNameInfo(fileName) {
36
36
  // Note: it appears that most of this data never gets used.
37
37
  return { path, name, ext, base, dir, protocol, query };
38
38
  }
39
- exports.getFileNameInfo = getFileNameInfo;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.idFactory = void 0;
8
+ exports.idFactory = idFactory;
9
9
  /** Builds id function returning ids within [firstId, maxId) */
10
10
  function idFactory(firstId = 0, maxId = Number.MAX_SAFE_INTEGER) {
11
11
  let _nextId = firstId;
@@ -15,4 +15,3 @@ function idFactory(firstId = 0, maxId = Number.MAX_SAFE_INTEGER) {
15
15
  return ret;
16
16
  };
17
17
  }
18
- exports.idFactory = idFactory;
@@ -6,7 +6,19 @@
6
6
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.formatBytes = exports.formatProgress = exports.formatTime = exports.merge = exports.assign = exports.shallowClone = exports.extend = exports.defaults = exports.shallowEqualArrays = exports.shallowEqualObjects = exports.shallowEqual = exports.deepEqual = exports.arrayEqual = exports.round = exports.noop = exports.Mask = exports.UUID = exports.StringBuilder = exports.BitFlags = void 0;
9
+ exports.merge = exports.assign = exports.noop = exports.Mask = exports.UUID = exports.StringBuilder = exports.BitFlags = void 0;
10
+ exports.round = round;
11
+ exports.arrayEqual = arrayEqual;
12
+ exports.deepEqual = deepEqual;
13
+ exports.shallowEqual = shallowEqual;
14
+ exports.shallowEqualObjects = shallowEqualObjects;
15
+ exports.shallowEqualArrays = shallowEqualArrays;
16
+ exports.defaults = defaults;
17
+ exports.extend = extend;
18
+ exports.shallowClone = shallowClone;
19
+ exports.formatTime = formatTime;
20
+ exports.formatProgress = formatProgress;
21
+ exports.formatBytes = formatBytes;
10
22
  const tslib_1 = require("tslib");
11
23
  const bit_flags_1 = require("./bit-flags");
12
24
  Object.defineProperty(exports, "BitFlags", { enumerable: true, get: function () { return bit_flags_1.BitFlags; } });
@@ -23,7 +35,6 @@ function round(n, d) {
23
35
  const f = Math.pow(10, d);
24
36
  return Math.round(f * n) / f;
25
37
  }
26
- exports.round = round;
27
38
  function arrayEqual(arr1, arr2) {
28
39
  const length = arr1.length;
29
40
  if (length !== arr2.length)
@@ -35,7 +46,6 @@ function arrayEqual(arr1, arr2) {
35
46
  }
36
47
  return true;
37
48
  }
38
- exports.arrayEqual = arrayEqual;
39
49
  const hasOwnProperty = Object.prototype.hasOwnProperty;
40
50
  function deepEqual(a, b) {
41
51
  // from https://github.com/epoberezkin/fast-deep-equal MIT
@@ -82,7 +92,6 @@ function deepEqual(a, b) {
82
92
  }
83
93
  return false;
84
94
  }
85
- exports.deepEqual = deepEqual;
86
95
  function shallowEqual(a, b) {
87
96
  if (a === b)
88
97
  return true;
@@ -97,7 +106,6 @@ function shallowEqual(a, b) {
97
106
  }
98
107
  return false;
99
108
  }
100
- exports.shallowEqual = shallowEqual;
101
109
  function shallowEqualObjects(a, b) {
102
110
  if (a === b)
103
111
  return true;
@@ -112,7 +120,6 @@ function shallowEqualObjects(a, b) {
112
120
  }
113
121
  return true;
114
122
  }
115
- exports.shallowEqualObjects = shallowEqualObjects;
116
123
  function shallowEqualArrays(a, b) {
117
124
  if (a === b)
118
125
  return true;
@@ -126,12 +133,10 @@ function shallowEqualArrays(a, b) {
126
133
  }
127
134
  return true;
128
135
  }
129
- exports.shallowEqualArrays = shallowEqualArrays;
130
136
  /** Returns `value` if not `undefined`, otherwise returns `defaultValue` */
131
137
  function defaults(value, defaultValue) {
132
138
  return value !== undefined ? value : defaultValue;
133
139
  }
134
- exports.defaults = defaults;
135
140
  function extend(object, source, guard) {
136
141
  let v;
137
142
  const s = source;
@@ -153,11 +158,9 @@ function extend(object, source, guard) {
153
158
  }
154
159
  return object;
155
160
  }
156
- exports.extend = extend;
157
161
  function shallowClone(o) {
158
162
  return extend({}, o);
159
163
  }
160
- exports.shallowClone = shallowClone;
161
164
  function _assign(target) {
162
165
  for (let s = 1; s < arguments.length; s++) {
163
166
  const from = arguments[s];
@@ -205,7 +208,6 @@ function formatTime(d) {
205
208
  const h = d.getHours(), m = d.getMinutes(), s = d.getSeconds();
206
209
  return `${h}:${padTime(m)}:${padTime(s)}`;
207
210
  }
208
- exports.formatTime = formatTime;
209
211
  function formatProgress(p) {
210
212
  const tp = p.root.progress;
211
213
  if (tp.isIndeterminate)
@@ -213,10 +215,8 @@ function formatProgress(p) {
213
215
  const x = (100 * tp.current / tp.max).toFixed(2);
214
216
  return `${tp.message} ${x}%`;
215
217
  }
216
- exports.formatProgress = formatProgress;
217
218
  function formatBytes(count) {
218
219
  const units = ['B', 'KB', 'MB', 'GB', 'TB', 'PB', 'EB', 'ZB', 'YB'];
219
220
  const i = Math.floor(Math.log(count) / Math.log(1024));
220
221
  return `${(count / Math.pow(1024, i)).toFixed(2)} ${units[i]}`;
221
222
  }
222
- exports.formatBytes = formatBytes;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.eventOffset = void 0;
8
+ exports.eventOffset = eventOffset;
9
9
  const rootPosition = { left: 0, top: 0 };
10
10
  function eventOffset(out, ev, target) {
11
11
  const cx = ev.clientX || 0;
@@ -15,7 +15,6 @@ function eventOffset(out, ev, target) {
15
15
  out[1] = cy - rect.top;
16
16
  return out;
17
17
  }
18
- exports.eventOffset = eventOffset;
19
18
  function getBoundingClientOffset(element) {
20
19
  if (element instanceof Window || element instanceof Document || element === document.body) {
21
20
  return rootPosition;
@@ -7,7 +7,10 @@
7
7
  * @author Russell Parker <russell@benchling.com>
8
8
  */
9
9
  Object.defineProperty(exports, "__esModule", { value: true });
10
- exports.InputObserver = exports.EmptyKeyInput = exports.ButtonsType = exports.ModifiersKeys = exports.DefaultInputObserverProps = exports.getModifiers = exports.getButton = exports.getButtons = void 0;
10
+ exports.InputObserver = exports.EmptyKeyInput = exports.ButtonsType = exports.ModifiersKeys = exports.DefaultInputObserverProps = void 0;
11
+ exports.getButtons = getButtons;
12
+ exports.getButton = getButton;
13
+ exports.getModifiers = getModifiers;
11
14
  const rxjs_1 = require("rxjs");
12
15
  const util_1 = require("../../mol-canvas3d/camera/util");
13
16
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
@@ -32,7 +35,6 @@ function getButtons(event) {
32
35
  }
33
36
  return 0;
34
37
  }
35
- exports.getButtons = getButtons;
36
38
  function getButton(event) {
37
39
  if (typeof event === 'object') {
38
40
  if ('button' in event) {
@@ -50,7 +52,6 @@ function getButton(event) {
50
52
  }
51
53
  return 0;
52
54
  }
53
- exports.getButton = getButton;
54
55
  function getModifiers(event) {
55
56
  return {
56
57
  alt: 'altKey' in event ? event.altKey : false,
@@ -59,7 +60,6 @@ function getModifiers(event) {
59
60
  meta: 'metaKey' in event ? event.metaKey : false
60
61
  };
61
62
  }
62
- exports.getModifiers = getModifiers;
63
63
  exports.DefaultInputObserverProps = {
64
64
  noScroll: true,
65
65
  noMiddleClickScroll: true,
@@ -5,7 +5,7 @@
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.isLittleEndian = void 0;
8
+ exports.isLittleEndian = isLittleEndian;
9
9
  function isLittleEndian() {
10
10
  const arrayBuffer = new ArrayBuffer(2);
11
11
  const uint8Array = new Uint8Array(arrayBuffer);
@@ -14,4 +14,3 @@ function isLittleEndian() {
14
14
  uint8Array[1] = 0xBB;
15
15
  return uint16array[0] === 0xBBAA;
16
16
  }
17
- exports.isLittleEndian = isLittleEndian;
@@ -5,20 +5,19 @@
5
5
  * @author Adam Midlik <midlik@gmail.com>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.onelinerJsonString = exports.canonicalJsonString = void 0;
8
+ exports.canonicalJsonString = canonicalJsonString;
9
+ exports.onelinerJsonString = onelinerJsonString;
9
10
  const object_1 = require("./object");
10
11
  /** Return a canonical string representation for a JSON-able object,
11
12
  * independent from object key order and undefined properties. */
12
13
  function canonicalJsonString(obj) {
13
14
  return JSON.stringify(obj, (key, value) => (0, object_1.isPlainObject)(value) ? sortObjectKeys(value) : value);
14
15
  }
15
- exports.canonicalJsonString = canonicalJsonString;
16
16
  /** Return a pretty JSON representation for a JSON-able object,
17
17
  * (single line, but use space after comma). E.g. '{"name": "Bob", "favorite_numbers": [1, 2, 3]}' */
18
18
  function onelinerJsonString(obj) {
19
19
  return JSON.stringify(obj, undefined, '\t').replace(/,\n\t*/g, ', ').replace(/\n\t*/g, '');
20
20
  }
21
- exports.onelinerJsonString = onelinerJsonString;
22
21
  /** Return a copy of object `obj` with alphabetically sorted keys and dropped keys whose value is undefined. */
23
22
  function sortObjectKeys(obj) {
24
23
  const result = {};
@@ -5,12 +5,11 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.ScaleLegend = exports.TableLegend = void 0;
8
+ exports.TableLegend = TableLegend;
9
+ exports.ScaleLegend = ScaleLegend;
9
10
  function TableLegend(table) {
10
11
  return { kind: 'table-legend', table };
11
12
  }
12
- exports.TableLegend = TableLegend;
13
13
  function ScaleLegend(minLabel, maxLabel, colors) {
14
14
  return { kind: 'scale-legend', minLabel, maxLabel, colors };
15
15
  }
16
- exports.ScaleLegend = ScaleLegend;
@@ -5,7 +5,7 @@
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.makeDir = void 0;
8
+ exports.makeDir = makeDir;
9
9
  const tslib_1 = require("tslib");
10
10
  const fs = tslib_1.__importStar(require("fs"));
11
11
  function makeDir(path, root) {
@@ -20,4 +20,3 @@ function makeDir(path, root) {
20
20
  }
21
21
  return !dirs.length || makeDir(dirs.join('/'), root);
22
22
  }
23
- exports.makeDir = makeDir;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.DefaultMap = void 0;
8
+ exports.DefaultMap = DefaultMap;
9
9
  /** A `Map` instance with a `getDefault` method added. */
10
10
  function DefaultMap(valueCtor) {
11
11
  const map = new Map();
@@ -18,7 +18,6 @@ function DefaultMap(valueCtor) {
18
18
  };
19
19
  return map;
20
20
  }
21
- exports.DefaultMap = DefaultMap;
22
21
  // TODO currently not working, see https://github.com/Microsoft/TypeScript/issues/10853
23
22
  // /** A `Map` with a `getDefault` method added. */
24
23
  // export class DefaultMap<K, V> extends Map<K, V> {
@@ -5,7 +5,12 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.getPartialMarkerAverage = exports.getMarkerInfo = exports.applyMarkerAction = exports.applyMarkerActionAtPosition = exports.setMarkerValue = exports.MarkerActions = exports.MarkerAction = void 0;
8
+ exports.MarkerActions = exports.MarkerAction = void 0;
9
+ exports.setMarkerValue = setMarkerValue;
10
+ exports.applyMarkerActionAtPosition = applyMarkerActionAtPosition;
11
+ exports.applyMarkerAction = applyMarkerAction;
12
+ exports.getMarkerInfo = getMarkerInfo;
13
+ exports.getPartialMarkerAverage = getPartialMarkerAverage;
9
14
  const int_1 = require("../mol-data/int");
10
15
  const bit_flags_1 = require("./bit-flags");
11
16
  const type_helpers_1 = require("./type-helpers");
@@ -41,7 +46,6 @@ var MarkerActions;
41
46
  function setMarkerValue(array, status, count) {
42
47
  array.fill(status, 0, count);
43
48
  }
44
- exports.setMarkerValue = setMarkerValue;
45
49
  function applyMarkerActionAtPosition(array, i, action) {
46
50
  switch (action) {
47
51
  case MarkerAction.Highlight:
@@ -64,7 +68,6 @@ function applyMarkerActionAtPosition(array, i, action) {
64
68
  break;
65
69
  }
66
70
  }
67
- exports.applyMarkerActionAtPosition = applyMarkerActionAtPosition;
68
71
  function applyMarkerAction(array, set, action) {
69
72
  if (action === MarkerAction.None)
70
73
  return false;
@@ -152,7 +155,6 @@ function applyMarkerAction(array, set, action) {
152
155
  }
153
156
  return true;
154
157
  }
155
- exports.applyMarkerAction = applyMarkerAction;
156
158
  function getMarkerInfo(action, currentStatus) {
157
159
  let average = -1;
158
160
  let status = -1;
@@ -228,7 +230,6 @@ function getMarkerInfo(action, currentStatus) {
228
230
  }
229
231
  return { average, status };
230
232
  }
231
- exports.getMarkerInfo = getMarkerInfo;
232
233
  /**
233
234
  * Assumes the action is applied to a partial set that is
234
235
  * neither the empty set nor the full set.
@@ -282,4 +283,3 @@ function getPartialMarkerAverage(action, currentStatus) {
282
283
  (0, type_helpers_1.assertUnreachable)(action);
283
284
  }
284
285
  }
285
- exports.getPartialMarkerAverage = getPartialMarkerAverage;
@@ -5,7 +5,8 @@
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Mask = exports.sortAsc = void 0;
8
+ exports.Mask = void 0;
9
+ exports.sortAsc = sortAsc;
9
10
  // TODO check if the removal of FastSet and the removal of the context object for forEach
10
11
  // have any performance implications
11
12
  function _ascSort(a, b) {
@@ -15,7 +16,6 @@ function sortAsc(array) {
15
16
  Array.prototype.sort.call(array, _ascSort);
16
17
  return array;
17
18
  }
18
- exports.sortAsc = sortAsc;
19
19
  var Mask;
20
20
  (function (Mask) {
21
21
  class EmptyMask {
@@ -5,12 +5,11 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Material = void 0;
8
+ exports.Material = Material;
9
9
  const param_definition_1 = require("./param-definition");
10
10
  function Material(values) {
11
11
  return { ...Material.Zero, ...values };
12
12
  }
13
- exports.Material = Material;
14
13
  (function (Material) {
15
14
  Material.Zero = { metalness: 0, roughness: 0, bumpiness: 0 };
16
15
  function toArray(material, array, offset) {
@@ -5,7 +5,8 @@
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.memoize1 = exports.memoizeLatest = void 0;
8
+ exports.memoizeLatest = memoizeLatest;
9
+ exports.memoize1 = memoize1;
9
10
  /** Cache the latest result from calls to a function with any number of arguments */
10
11
  function memoizeLatest(f) {
11
12
  let lastArgs = void 0, value = void 0;
@@ -25,7 +26,6 @@ function memoizeLatest(f) {
25
26
  return value;
26
27
  };
27
28
  }
28
- exports.memoizeLatest = memoizeLatest;
29
29
  /** Cache all results from calls to a function with a single argument */
30
30
  function memoize1(f) {
31
31
  const cache = new Map();
@@ -37,4 +37,3 @@ function memoize1(f) {
37
37
  return v;
38
38
  };
39
39
  }
40
- exports.memoize1 = memoize1;
@@ -21,6 +21,6 @@ export declare const XMLHttpRequest_: {
21
21
  };
22
22
  /** Like `File` but works also in Node.js */
23
23
  export declare const File_: {
24
- new (fileBits: BlobPart[], fileName: string, options?: FilePropertyBag | undefined): File;
24
+ new (fileBits: BlobPart[], fileName: string, options?: FilePropertyBag): File;
25
25
  prototype: File;
26
26
  };
@@ -5,7 +5,8 @@
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.formatTimespan = exports.now = void 0;
8
+ exports.now = void 0;
9
+ exports.formatTimespan = formatTimespan;
9
10
  const now = (function () {
10
11
  if (typeof window !== 'undefined' && window.performance) {
11
12
  const perf = window.performance;
@@ -42,4 +43,3 @@ function formatTimespan(t, includeMsZeroes = true) {
42
43
  return `${s}.${ms}s`;
43
44
  return `${t.toFixed(0)}ms`;
44
45
  }
45
- exports.formatTimespan = formatTimespan;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.unpackRGBAToDepth = exports.unpackRGBToInt = exports.packIntToRGBArray = void 0;
8
+ exports.packIntToRGBArray = packIntToRGBArray;
9
+ exports.unpackRGBToInt = unpackRGBToInt;
10
+ exports.unpackRGBAToDepth = unpackRGBAToDepth;
9
11
  const interpolate_1 = require("../mol-math/interpolate");
10
12
  const linear_algebra_1 = require("../mol-math/linear-algebra");
11
13
  /** encode positive integer as rgb byte triplet into array at offset */
@@ -18,12 +20,10 @@ function packIntToRGBArray(value, array, offset) {
18
20
  array[offset] = value % 256;
19
21
  return array;
20
22
  }
21
- exports.packIntToRGBArray = packIntToRGBArray;
22
23
  /** decode positive integer encoded as rgb byte triplet */
23
24
  function unpackRGBToInt(r, g, b) {
24
25
  return (Math.floor(r) * 256 * 256 + Math.floor(g) * 256 + Math.floor(b)) - 1;
25
26
  }
26
- exports.unpackRGBToInt = unpackRGBToInt;
27
27
  const UnpackDownscale = 255 / 256; // 0..1 -> fraction (excluding 1)
28
28
  const PackFactors = linear_algebra_1.Vec3.create(256 * 256 * 256, 256 * 256, 256);
29
29
  const UnpackFactors = linear_algebra_1.Vec4.create(UnpackDownscale / PackFactors[0], UnpackDownscale / PackFactors[1], UnpackDownscale / PackFactors[2], UnpackDownscale / 1);
@@ -32,4 +32,3 @@ function unpackRGBAToDepth(r, g, b, a) {
32
32
  linear_algebra_1.Vec4.set(tmpDepthRGBA, r / 255, g / 255, b / 255, a / 255);
33
33
  return linear_algebra_1.Vec4.dot(tmpDepthRGBA, UnpackFactors);
34
34
  }
35
- exports.unpackRGBAToDepth = unpackRGBAToDepth;