molstar 4.3.0 → 4.4.0

package/lib/commonjs/mol-theme/label.js

@@ -6,7 +6,17 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.dihedralLabel = exports.angleLabel = exports.distanceLabel = exports.elementLabel = exports._bundleLabel = exports.bundleLabel = exports.bondLabel = exports.structureElementLociLabelMany = exports.structureElementStatsLabel = exports.lociLabel = exports.DefaultLabelOptions = void 0;
+exports.DefaultLabelOptions = void 0;
+exports.lociLabel = lociLabel;
+exports.structureElementStatsLabel = structureElementStatsLabel;
+exports.structureElementLociLabelMany = structureElementLociLabelMany;
+exports.bondLabel = bondLabel;
+exports.bundleLabel = bundleLabel;
+exports._bundleLabel = _bundleLabel;
+exports.elementLabel = elementLabel;
+exports.distanceLabel = distanceLabel;
+exports.angleLabel = angleLabel;
+exports.dihedralLabel = dihedralLabel;
 const structure_1 = require("../mol-model/structure");
 const loci_1 = require("../mol-model/loci");
 const int_1 = require("../mol-data/int");
@@ -76,7 +86,6 @@ function lociLabel(loci, options = {}) {
             ].join(' | ');
     }
 }
-exports.lociLabel = lociLabel;
 function countLabel(count, label) {
     return count === 1 ? `1 ${label}` : `${count} ${label}s`;
 }
@@ -96,7 +105,6 @@ function structureElementStatsLabel(stats, options = {}) {
     const label = _structureElementStatsLabel(stats, o.countsOnly, o.hidePrefix, o.condensed, o.reverse);
     return o.htmlStyling ? label : (0, string_1.stripTags)(label);
 }
-exports.structureElementStatsLabel = structureElementStatsLabel;
 function structureElementLociLabelMany(locis, options = {}) {
     const stats = structure_1.StructureElement.Stats.create();
     for (const l of locis) {
@@ -104,7 +112,6 @@ function structureElementLociLabelMany(locis, options = {}) {
     }
     return structureElementStatsLabel(stats, options);
 }
-exports.structureElementLociLabelMany = structureElementLociLabelMany;
 function _structureElementStatsLabel(stats, countsOnly = false, hidePrefix = false, condensed = false, reverse = false) {
     const { structureCount, chainCount, residueCount, conformationCount, elementCount } = stats;
     if (!countsOnly && elementCount === 1 && residueCount === 0 && chainCount === 0) {
@@ -163,13 +170,11 @@ function bondLabel(bond, options = {}) {
             structure_1.StructureElement.Loci(bond.bStructure, [{ unit: bond.bUnit, indices: int_1.OrderedSet.ofSingleton(bond.bIndex) }])
         ] }, options);
 }
-exports.bondLabel = bondLabel;
 function bundleLabel(bundle, options = {}) {
     const o = { ...exports.DefaultLabelOptions, ...options };
     const label = _bundleLabel(bundle, o);
     return o.htmlStyling ? label : (0, string_1.stripTags)(label);
 }
-exports.bundleLabel = bundleLabel;
 function _bundleLabel(bundle, options) {
     const { granularity, hidePrefix, reverse, condensed } = options;
     let isSingleElements = true;
@@ -218,7 +223,6 @@ function _bundleLabel(bundle, options) {
         return labels.filter(l => !!l).join(condensed ? ' \u2014 ' : '</br>');
     }
 }
-exports._bundleLabel = _bundleLabel;
 function elementLabel(location, options = {}) {
     var _a, _b;
     const o = { ...exports.DefaultLabelOptions, ...options };
@@ -227,7 +231,6 @@ function elementLabel(location, options = {}) {
     const label = o.condensed ? (_b = (_a = _label[0]) === null || _a === void 0 ? void 0 : _a.replace(/\[.*\]/g, '').trim()) !== null && _b !== void 0 ? _b : '' : _label.filter(l => !!l).join(' | ');
     return o.htmlStyling ? label : (0, string_1.stripTags)(label);
 }
-exports.elementLabel = elementLabel;
 function _elementLabel(location, granularity = 'element', hidePrefix = false, reverse = false) {
     const label = [];
     if (!hidePrefix) {
@@ -328,7 +331,6 @@ function distanceLabel(pair, options = {}) {
     const label = bundleLabel(pair, o);
     return o.condensed ? `${distance} | ${label}` : `Distance ${distance}</br>${label}`;
 }
-exports.distanceLabel = distanceLabel;
 function angleLabel(triple, options = {}) {
     const o = { ...exports.DefaultLabelOptions, measureOnly: false, ...options };
     const [cA, cB, cC] = triple.loci.map(l => loci_1.Loci.getCenter(l));
@@ -340,7 +342,6 @@ function angleLabel(triple, options = {}) {
     const label = bundleLabel(triple, o);
     return o.condensed ? `${angle} | ${label}` : `Angle ${angle}</br>${label}`;
 }
-exports.angleLabel = angleLabel;
 function dihedralLabel(quad, options = {}) {
     const o = { ...exports.DefaultLabelOptions, measureOnly: false, ...options };
     const [cA, cB, cC, cD] = quad.loci.map(l => loci_1.Loci.getCenter(l));
@@ -350,4 +351,3 @@ function dihedralLabel(quad, options = {}) {
     const label = bundleLabel(quad, o);
     return o.condensed ? `${dihedral} | ${label}` : `Dihedral ${dihedral}</br>${label}`;
 }
-exports.dihedralLabel = dihedralLabel;

package/lib/commonjs/mol-theme/overpaint.js

@@ -5,7 +5,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Overpaint = void 0;
+exports.Overpaint = Overpaint;
 const loci_1 = require("../mol-model/loci");
 const color_1 = require("../mol-util/color");
 const structure_1 = require("../mol-model/structure");
@@ -13,7 +13,6 @@ const script_1 = require("../mol-script/script");
 function Overpaint(kind, layers) {
     return { kind, layers };
 }
-exports.Overpaint = Overpaint;
 (function (Overpaint) {
     Overpaint.Empty = { kind: 'empty-loci', layers: [] };
     function areEqual(oA, oB) {

package/lib/commonjs/mol-theme/size/physical.js

@@ -5,7 +5,10 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.PhysicalSizeThemeProvider = exports.PhysicalSizeTheme = exports.getPhysicalRadius = exports.getPhysicalSizeThemeParams = exports.PhysicalSizeThemeParams = void 0;
+exports.PhysicalSizeThemeProvider = exports.PhysicalSizeThemeParams = void 0;
+exports.getPhysicalSizeThemeParams = getPhysicalSizeThemeParams;
+exports.getPhysicalRadius = getPhysicalRadius;
+exports.PhysicalSizeTheme = PhysicalSizeTheme;
 const structure_1 = require("../../mol-model/structure");
 const atomic_1 = require("../../mol-model/structure/model/properties/atomic");
 const param_definition_1 = require("../../mol-util/param-definition");
@@ -17,7 +20,6 @@ exports.PhysicalSizeThemeParams = {
 function getPhysicalSizeThemeParams(ctx) {
     return exports.PhysicalSizeThemeParams; // TODO return copy
 }
-exports.getPhysicalSizeThemeParams = getPhysicalSizeThemeParams;
 function getPhysicalRadius(unit, element) {
     if (structure_1.Unit.isAtomic(unit)) {
         return (0, atomic_1.VdwRadius)(unit.model.atomicHierarchy.atoms.type_symbol.value(element));
@@ -29,7 +31,6 @@ function getPhysicalRadius(unit, element) {
         return 0;
     }
 }
-exports.getPhysicalRadius = getPhysicalRadius;
 /**
  * Create attribute data with the physical size of an element,
  * i.e. vdw for atoms and radius for coarse spheres
@@ -57,7 +58,6 @@ function PhysicalSizeTheme(ctx, props) {
         description: Description
     };
 }
-exports.PhysicalSizeTheme = PhysicalSizeTheme;
 exports.PhysicalSizeThemeProvider = {
     name: 'physical',
     label: 'Physical',

package/lib/commonjs/mol-theme/size/shape-group.js

@@ -5,7 +5,9 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.ShapeGroupSizeThemeProvider = exports.ShapeGroupSizeTheme = exports.getShapeGroupSizeThemeParams = exports.ShapeGroupSizeThemeParams = void 0;
+exports.ShapeGroupSizeThemeProvider = exports.ShapeGroupSizeThemeParams = void 0;
+exports.getShapeGroupSizeThemeParams = getShapeGroupSizeThemeParams;
+exports.ShapeGroupSizeTheme = ShapeGroupSizeTheme;
 const shape_1 = require("../../mol-model/shape");
 const param_definition_1 = require("../../mol-util/param-definition");
 const DefaultSize = 1;
@@ -14,7 +16,6 @@ exports.ShapeGroupSizeThemeParams = {};
 function getShapeGroupSizeThemeParams(ctx) {
     return exports.ShapeGroupSizeThemeParams; // TODO return copy
 }
-exports.getShapeGroupSizeThemeParams = getShapeGroupSizeThemeParams;
 function ShapeGroupSizeTheme(ctx, props) {
     return {
         factory: ShapeGroupSizeTheme,
@@ -29,7 +30,6 @@ function ShapeGroupSizeTheme(ctx, props) {
         description: Description
     };
 }
-exports.ShapeGroupSizeTheme = ShapeGroupSizeTheme;
 exports.ShapeGroupSizeThemeProvider = {
     name: 'shape-group',
     label: 'Shape Group',

package/lib/commonjs/mol-theme/size/uncertainty.js

@@ -5,7 +5,10 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.UncertaintySizeThemeProvider = exports.UncertaintySizeTheme = exports.getUncertainty = exports.getUncertaintySizeThemeParams = exports.UncertaintySizeThemeParams = void 0;
+exports.UncertaintySizeThemeProvider = exports.UncertaintySizeThemeParams = void 0;
+exports.getUncertaintySizeThemeParams = getUncertaintySizeThemeParams;
+exports.getUncertainty = getUncertainty;
+exports.UncertaintySizeTheme = UncertaintySizeTheme;
 const structure_1 = require("../../mol-model/structure");
 const param_definition_1 = require("../../mol-util/param-definition");
 const Description = `Assigns a size reflecting the uncertainty or disorder of an element's position, e.g. B-factor or RMSF, depending on the data availability and experimental technique.`;
@@ -17,7 +20,6 @@ exports.UncertaintySizeThemeParams = {
 function getUncertaintySizeThemeParams(ctx) {
     return exports.UncertaintySizeThemeParams; // TODO return copy
 }
-exports.getUncertaintySizeThemeParams = getUncertaintySizeThemeParams;
 function getUncertainty(unit, element, props) {
     if (structure_1.Unit.isAtomic(unit)) {
         return unit.model.atomicConformation.B_iso_or_equiv.value(element) * props.bfactorFactor;
@@ -29,7 +31,6 @@ function getUncertainty(unit, element, props) {
         return 0;
     }
 }
-exports.getUncertainty = getUncertainty;
 function UncertaintySizeTheme(ctx, props) {
     function size(location) {
         let size = props.baseSize;
@@ -49,7 +50,6 @@ function UncertaintySizeTheme(ctx, props) {
         description: Description
     };
 }
-exports.UncertaintySizeTheme = UncertaintySizeTheme;
 exports.UncertaintySizeThemeProvider = {
     name: 'uncertainty',
     label: 'Uncertainty/Disorder',

package/lib/commonjs/mol-theme/size/uniform.js

@@ -5,7 +5,9 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.UniformSizeThemeProvider = exports.UniformSizeTheme = exports.getUniformSizeThemeParams = exports.UniformSizeThemeParams = void 0;
+exports.UniformSizeThemeProvider = exports.UniformSizeThemeParams = void 0;
+exports.getUniformSizeThemeParams = getUniformSizeThemeParams;
+exports.UniformSizeTheme = UniformSizeTheme;
 const param_definition_1 = require("../../mol-util/param-definition");
 const Description = 'Gives everything the same, uniform size.';
 exports.UniformSizeThemeParams = {
@@ -14,7 +16,6 @@ exports.UniformSizeThemeParams = {
 function getUniformSizeThemeParams(ctx) {
     return exports.UniformSizeThemeParams; // TODO return copy
 }
-exports.getUniformSizeThemeParams = getUniformSizeThemeParams;
 function UniformSizeTheme(ctx, props) {
     const size = props.value;
     return {
@@ -25,7 +26,6 @@ function UniformSizeTheme(ctx, props) {
         description: Description
     };
 }
-exports.UniformSizeTheme = UniformSizeTheme;
 exports.UniformSizeThemeProvider = {
     name: 'uniform',
     label: 'Uniform',

package/lib/commonjs/mol-theme/substance.js

@@ -5,7 +5,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Substance = void 0;
+exports.Substance = Substance;
 const loci_1 = require("../mol-model/loci");
 const structure_1 = require("../mol-model/structure");
 const script_1 = require("../mol-script/script");
@@ -14,7 +14,6 @@ const object_1 = require("../mol-util/object");
 function Substance(kind, layers) {
     return { kind, layers };
 }
-exports.Substance = Substance;
 (function (Substance) {
     Substance.Empty = { kind: 'empty-loci', layers: [] };
     function areEqual(sA, sB) {

package/lib/commonjs/mol-theme/theme.d.ts

@@ -56,11 +56,11 @@ export declare class ThemeRegistry<T extends ColorTheme<any, any> | SizeTheme<an
     private _name;
     get default(): {
         name: string;
-        provider: ThemeProvider<T, any, string, ColorType>;
+        provider: ThemeProvider<T, any>;
     };
     get list(): {
         name: string;
-        provider: ThemeProvider<T, any, string, ColorType>;
+        provider: ThemeProvider<T, any>;
     }[];
     get types(): [string, string, string][];
     constructor(builtInThemes: {
@@ -75,7 +75,7 @@ export declare class ThemeRegistry<T extends ColorTheme<any, any> | SizeTheme<an
     create(name: string, ctx: ThemeDataContext, props?: {}): T;
     getApplicableList(ctx: ThemeDataContext): {
         name: string;
-        provider: ThemeProvider<T, any, string, ColorType>;
+        provider: ThemeProvider<T, any>;
     }[];
     getApplicableTypes(ctx: ThemeDataContext): [string, string, string][];
     clear(): void;

package/lib/commonjs/mol-theme/transparency.js

@@ -5,14 +5,13 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Transparency = void 0;
+exports.Transparency = Transparency;
 const loci_1 = require("../mol-model/loci");
 const structure_1 = require("../mol-model/structure");
 const script_1 = require("../mol-script/script");
 function Transparency(kind, layers) {
     return { kind, layers };
 }
-exports.Transparency = Transparency;
 (function (Transparency) {
     Transparency.Empty = { kind: 'empty-loci', layers: [] };
     function areEqual(tA, tB) {

package/lib/commonjs/mol-util/array.js

@@ -6,7 +6,28 @@
  * @author Adam Midlik <midlik@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.arrayDistinct = exports.filterInPlace = exports.arrayIsSorted = exports.sortIfNeeded = exports.arrayExtend = exports.range = exports.arrayMapUpsert = exports.arrayIsIdentity = exports.arrayEqual = exports.arrayIntersectionSize = exports.arrayAreIntersecting = exports.arraySetRemove = exports.arraySetAdd = exports.arrayRemoveAtInPlace = exports.arrayRemoveInPlace = exports.fillSerial = exports.arrayRms = exports.arrayMean = exports.arraySum = exports.arrayMinMax = exports.arrayMin = exports.arrayMax = void 0;
+exports.arrayMax = arrayMax;
+exports.arrayMin = arrayMin;
+exports.arrayMinMax = arrayMinMax;
+exports.arraySum = arraySum;
+exports.arrayMean = arrayMean;
+exports.arrayRms = arrayRms;
+exports.fillSerial = fillSerial;
+exports.arrayRemoveInPlace = arrayRemoveInPlace;
+exports.arrayRemoveAtInPlace = arrayRemoveAtInPlace;
+exports.arraySetAdd = arraySetAdd;
+exports.arraySetRemove = arraySetRemove;
+exports.arrayAreIntersecting = arrayAreIntersecting;
+exports.arrayIntersectionSize = arrayIntersectionSize;
+exports.arrayEqual = arrayEqual;
+exports.arrayIsIdentity = arrayIsIdentity;
+exports.arrayMapUpsert = arrayMapUpsert;
+exports.range = range;
+exports.arrayExtend = arrayExtend;
+exports.sortIfNeeded = sortIfNeeded;
+exports.arrayIsSorted = arrayIsSorted;
+exports.filterInPlace = filterInPlace;
+exports.arrayDistinct = arrayDistinct;
 const json_1 = require("./json");
 // TODO move to mol-math as Vector???
 /** Get the maximum value in an array */
@@ -18,7 +39,6 @@ function arrayMax(array) {
     }
     return max;
 }
-exports.arrayMax = arrayMax;
 /** Get the minimum value in an array */
 function arrayMin(array) {
     let min = Infinity;
@@ -28,7 +48,6 @@ function arrayMin(array) {
     }
     return min;
 }
-exports.arrayMin = arrayMin;
 /** Get the minimum & maximum value in an array */
 function arrayMinMax(array) {
     let min = Infinity;
@@ -41,7 +60,6 @@ function arrayMinMax(array) {
     }
     return [min, max];
 }
-exports.arrayMinMax = arrayMinMax;
 /** Get the sum of values in an array */
 function arraySum(array, stride = 1, offset = 0) {
     const n = array.length;
@@ -51,12 +69,10 @@ function arraySum(array, stride = 1, offset = 0) {
     }
     return sum;
 }
-exports.arraySum = arraySum;
 /** Get the mean of values in an array */
 function arrayMean(array, stride = 1, offset = 0) {
     return arraySum(array, stride, offset) / (array.length / stride);
 }
-exports.arrayMean = arrayMean;
 /** Get the root mean square of values in an array */
 function arrayRms(array) {
     const n = array.length;
@@ -67,14 +83,12 @@ function arrayRms(array) {
     }
     return Math.sqrt(sumSq / n);
 }
-exports.arrayRms = arrayRms;
 /** Fill an array with serial numbers starting from 0 until n - 1 (defaults to array.length) */
 function fillSerial(array, n) {
     for (let i = 0, il = n ? Math.min(n, array.length) : array.length; i < il; ++i)
         array[i] = i;
     return array;
 }
-exports.fillSerial = fillSerial;
 function arrayRemoveInPlace(xs, x) {
     let i = 0, found = false;
     for (const il = xs.length; i < il; i++) {
@@ -88,21 +102,18 @@ function arrayRemoveInPlace(xs, x) {
     arrayRemoveAtInPlace(xs, i);
     return true;
 }
-exports.arrayRemoveInPlace = arrayRemoveInPlace;
 function arrayRemoveAtInPlace(xs, idx) {
     for (let i = idx, _i = xs.length - 1; i < _i; i++) {
         xs[i] = xs[i + 1];
     }
     xs.pop();
 }
-exports.arrayRemoveAtInPlace = arrayRemoveAtInPlace;
 function arraySetAdd(xs, x) {
     if (xs.indexOf(x) >= 0)
         return false;
     xs.push(x);
     return true;
 }
-exports.arraySetAdd = arraySetAdd;
 function arraySetRemove(xs, x) {
     const idx = xs.indexOf(x);
     if (idx < 0)
@@ -113,7 +124,6 @@ function arraySetRemove(xs, x) {
     xs.pop();
     return true;
 }
-exports.arraySetRemove = arraySetRemove;
 /**
  * Caution, O(n^2) complexity. Only use for small input sizes.
  * For larger inputs consider using `SortedArray`.
@@ -125,7 +135,6 @@ function arrayAreIntersecting(xs, ys) {
     }
     return false;
 }
-exports.arrayAreIntersecting = arrayAreIntersecting;
 /**
  * Caution, O(n^2) complexity. Only use for small input sizes.
  * For larger inputs consider using `SortedArray`.
@@ -138,7 +147,6 @@ function arrayIntersectionSize(xs, ys) {
     }
     return count;
 }
-exports.arrayIntersectionSize = arrayIntersectionSize;
 function arrayEqual(xs, ys) {
     if (!xs || xs.length === 0)
         return !ys || ys.length === 0;
@@ -153,7 +161,6 @@ function arrayEqual(xs, ys) {
     }
     return true;
 }
-exports.arrayEqual = arrayEqual;
 function arrayIsIdentity(xs) {
     for (let i = 0, _i = xs.length; i < _i; i++) {
         if (xs[i] !== i)
@@ -161,7 +168,6 @@ function arrayIsIdentity(xs) {
     }
     return true;
 }
-exports.arrayIsIdentity = arrayIsIdentity;
 function arrayMapUpsert(xs, key, value) {
     for (let i = 0, il = xs.length; i < il; ++i) {
         if (xs[i][0] === key) {
@@ -171,7 +177,6 @@ function arrayMapUpsert(xs, key, value) {
     }
     xs.push([key, value]);
 }
-exports.arrayMapUpsert = arrayMapUpsert;
 /** Return an array containing integers from [start, end) if `end` is given,
  * or from [0, start) if `end` is omitted. */
 function range(start, end) {
@@ -186,7 +191,6 @@ function range(start, end) {
     }
     return result;
 }
-exports.range = range;
 /** Copy all elements from `src` to the end of `dst`.
  * Equivalent to `dst.push(...src)`, but avoids storing element on call stack. Faster that `extend` from Underscore.js.
  * `extend(a, a)` will double the array.
@@ -201,12 +205,10 @@ function arrayExtend(dst, src) {
     }
     return dst;
 }
-exports.arrayExtend = arrayExtend;
 /** Check whether `array` is sorted, sort if not. */
 function sortIfNeeded(array, compareFn) {
     return arrayIsSorted(array, compareFn) ? array : array.sort(compareFn);
 }
-exports.sortIfNeeded = sortIfNeeded;
 /** Decide whether `array` is sorted. */
 function arrayIsSorted(array, compareFn) {
     for (let i = 1, n = array.length; i < n; i++) {
@@ -216,7 +218,6 @@ function arrayIsSorted(array, compareFn) {
     }
     return true;
 }
-exports.arrayIsSorted = arrayIsSorted;
 /** Remove all elements from the array which do not fulfil `predicate`. Return the modified array itself. */
 function filterInPlace(array, predicate) {
     const n = array.length;
@@ -229,7 +230,6 @@ function filterInPlace(array, predicate) {
     array.length = iDest;
     return array;
 }
-exports.filterInPlace = filterInPlace;
 /** Return an array of all distinct values from `values`
  * (i.e. with removed duplicates).
  * Uses deep equality for objects and arrays,
@@ -248,4 +248,3 @@ function arrayDistinct(values) {
     }
     return result;
 }
-exports.arrayDistinct = arrayDistinct;

package/lib/commonjs/mol-util/binding.js

@@ -5,13 +5,12 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Binding = void 0;
+exports.Binding = Binding;
 const input_observer_1 = require("./input/input-observer");
 const string_1 = require("./string");
 function Binding(triggers, action = '', description = '') {
     return Binding.create(triggers, action, description);
 }
-exports.Binding = Binding;
 (function (Binding) {
     function create(triggers, action = '', description = '') {
         return { triggers, action, description };

package/lib/commonjs/mol-util/clip.js

@@ -5,14 +5,13 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Clip = void 0;
+exports.Clip = Clip;
 const linear_algebra_1 = require("../mol-math/linear-algebra");
 const misc_1 = require("../mol-math/misc");
 const param_definition_1 = require("./param-definition");
 const string_1 = require("./string");
 function Clip() {
 }
-exports.Clip = Clip;
 (function (Clip) {
     /** Clip object types */
     Clip.Type = {

package/lib/commonjs/mol-util/color/color.js

@@ -5,11 +5,15 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.ColorSwatch = exports.getAdjustedColorMap = exports.ColorMap = exports.ColorTable = exports.ColorList = exports.Color = void 0;
+exports.Color = Color;
+exports.ColorList = ColorList;
+exports.ColorTable = ColorTable;
+exports.ColorMap = ColorMap;
+exports.getAdjustedColorMap = getAdjustedColorMap;
+exports.ColorSwatch = ColorSwatch;
 const hcl_1 = require("./spaces/hcl");
 const lab_1 = require("./spaces/lab");
 function Color(hex) { return hex; }
-exports.Color = Color;
 (function (Color) {
     function toStyle(hexColor) {
         return `rgb(${hexColor >> 16 & 255}, ${hexColor >> 8 & 255}, ${hexColor & 255})`;
@@ -178,11 +182,8 @@ exports.Color = Color;
 function ColorList(label, type, description, list) {
     return { label, description, list: list, type };
 }
-exports.ColorList = ColorList;
 function ColorTable(o) { return o; }
-exports.ColorTable = ColorTable;
 function ColorMap(o) { return o; }
-exports.ColorMap = ColorMap;
 function getAdjustedColorMap(map, saturation, lightness) {
     const adjustedMap = {};
     for (const e in map) {
@@ -193,6 +194,4 @@ function getAdjustedColorMap(map, saturation, lightness) {
     }
     return adjustedMap;
 }
-exports.getAdjustedColorMap = getAdjustedColorMap;
 function ColorSwatch(l) { return l; }
-exports.ColorSwatch = ColorSwatch;

package/lib/commonjs/mol-util/color/distinct.js

@@ -9,7 +9,8 @@
  * which is heavily inspired by http://tools.medialab.sciences-po.fr/iwanthue/
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.distinctColors = exports.DistinctColorsParams = void 0;
+exports.DistinctColorsParams = void 0;
+exports.distinctColors = distinctColors;
 const lab_1 = require("./spaces/lab");
 const hcl_1 = require("./spaces/hcl");
 const object_1 = require("../../mol-util/object");
@@ -152,4 +153,3 @@ function distinctColors(count, props = {}) {
     const sorted = p.sort === 'contrast' ? sortByContrast(colors) : colors;
     return sorted.map(c => lab_1.Lab.toColor(c));
 }
-exports.distinctColors = distinctColors;

package/lib/commonjs/mol-util/color/lists.js

@@ -5,7 +5,8 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getColorListFromName = exports.ColorListOptionsSet = exports.ColorListOptionsScale = exports.ColorListOptions = exports.ColorListNames = exports.ColorLists = void 0;
+exports.ColorListOptionsSet = exports.ColorListOptionsScale = exports.ColorListOptions = exports.ColorListNames = exports.ColorLists = void 0;
+exports.getColorListFromName = getColorListFromName;
 const color_1 = require("./color");
 const string_1 = require("../string");
 exports.ColorLists = {
@@ -87,4 +88,3 @@ function getColorListFromName(name) {
     console.warn(`unknown color list named '${name}'`);
     return exports.ColorLists['red-yellow-blue'];
 }
-exports.getColorListFromName = getColorListFromName;

package/lib/commonjs/mol-util/color/palette.d.ts

@@ -7,10 +7,11 @@
 import { Color } from '.';
 import { ScaleLegend, TableLegend } from '../legend';
 import { ParamDefinition as PD } from '../param-definition';
+import { ColorListName } from './lists';
 type PaletteType = 'generate' | 'colors';
 declare const DefaultGetPaletteProps: {
     type: PaletteType;
-    colorList: "orange-red" | "purple-blue" | "blue-purple" | "oranges" | "blue-green" | "yellow-orange-brown" | "yellow-green" | "reds" | "red-purple" | "greens" | "yellow-green-blue" | "purples" | "green-blue" | "greys" | "yellow-orange-red" | "purple-red" | "blues" | "purple-blue-green" | "spectral" | "red-yellow-green" | "red-blue" | "pink-yellow-green" | "purple-green" | "red-yellow-blue" | "brown-white-green" | "red-grey" | "orange-purple" | "set-2" | "accent" | "set-1" | "set-3" | "dark-2" | "paired" | "pastel-2" | "pastel-1" | "many-distinct" | "magma" | "inferno" | "plasma" | "viridis" | "cividis" | "twilight" | "turbo" | "rainbow" | "red-white-blue";
+    colorList: ColorListName;
 };
 type GetPaletteProps = typeof DefaultGetPaletteProps;
 export declare function getPaletteParams(props?: Partial<GetPaletteProps>): {
@@ -25,7 +26,7 @@ export declare function getPaletteParams(props?: Partial<GetPaletteProps>): {
         sampleCountFactor: number;
     }>, "generate"> | PD.NamedParams<PD.Normalize<{
         list: {
-            kind: "set" | "interpolate";
+            kind: "interpolate" | "set";
             colors: import("./color").ColorListEntry[];
         };
     }>, "colors">>;
@@ -42,7 +43,7 @@ declare const DefaultPaletteProps: PD.Values<{
         sampleCountFactor: number;
     }>, "generate"> | PD.NamedParams<PD.Normalize<{
         list: {
-            kind: "set" | "interpolate";
+            kind: "interpolate" | "set";
             colors: import("./color").ColorListEntry[];
         };
     }>, "colors">>;

package/lib/commonjs/mol-util/color/palette.js

@@ -6,7 +6,8 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getPalette = exports.getPaletteParams = void 0;
+exports.getPaletteParams = getPaletteParams;
+exports.getPalette = getPalette;
 const legend_1 = require("../legend");
 const param_definition_1 = require("../param-definition");
 const distinct_1 = require("./distinct");
@@ -35,7 +36,6 @@ function getPaletteParams(props = {}) {
         })
     };
 }
-exports.getPaletteParams = getPaletteParams;
 const DefaultPaletteProps = param_definition_1.ParamDefinition.getDefaultValues(getPaletteParams());
 const DefaultLabelOptions = {
     valueLabel: (i) => `${i + 1}`,
@@ -85,4 +85,3 @@ function getPalette(count, props, labelOptions = {}) {
     }
     return { color, legend };
 }
-exports.getPalette = getPalette;

package/lib/commonjs/mol-util/color/params.js

@@ -5,7 +5,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getColorMapParams = void 0;
+exports.getColorMapParams = getColorMapParams;
 const param_definition_1 = require("../../mol-util/param-definition");
 const object_1 = require("../object");
 function getColorMapParams(map) {
@@ -15,4 +15,3 @@ function getColorMapParams(map) {
     });
     return colors;
 }
-exports.getColorMapParams = getColorMapParams;