molstar 4.3.0 → 4.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +197 -197
- package/build/viewer/embedded.html +52 -52
- package/build/viewer/index.html +129 -129
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +0 -9
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/viewport.d.ts +1 -1
- package/lib/apps/docking-viewer/viewport.js +2 -1
- package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
- package/lib/apps/mesoscale-explorer/app.js +12 -1
- package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
- package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
- package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
- package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
- package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
- package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
- package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
- package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
- package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
- package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
- package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
- package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
- package/lib/apps/mesoscale-explorer/data/state.js +83 -8
- package/lib/apps/mesoscale-explorer/index.html +106 -101
- package/lib/apps/mesoscale-explorer/style.scss +66 -33
- package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
- package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
- package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
- package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
- package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
- package/lib/apps/viewer/app.d.ts +10 -4
- package/lib/apps/viewer/app.js +28 -0
- package/lib/apps/viewer/embedded.html +52 -52
- package/lib/apps/viewer/index.html +129 -129
- package/lib/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/cli/cifschema/util/generate.js +12 -12
- package/lib/cli/lipid-params/index.js +9 -9
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
- package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
- package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
- package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
- package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
- package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
- package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
- package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
- package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
- package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
- package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
- package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
- package/lib/commonjs/apps/viewer/app.d.ts +10 -4
- package/lib/commonjs/apps/viewer/app.js +28 -0
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
- package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
- package/lib/commonjs/cli/cifschema/util/generate.js +13 -14
- package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
- package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
- package/lib/commonjs/cli/lipid-params/index.js +9 -9
- package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
- package/lib/commonjs/cli/structure-info/helpers.js +2 -3
- package/lib/commonjs/cli/structure-info/model.js +11 -12
- package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
- package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
- package/lib/commonjs/examples/lighting/index.d.ts +1 -1
- package/lib/commonjs/examples/lighting/index.js +2 -1
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
- package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
- package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
- package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
- package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/anvil/behavior.js +2 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
- package/lib/commonjs/extensions/anvil/representation.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
- package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/prop.js +27 -27
- package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
- package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
- package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +7 -7
- package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
- package/lib/commonjs/extensions/g3d/data.js +2 -3
- package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
- package/lib/commonjs/extensions/g3d/model.js +5 -5
- package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
- package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
- package/lib/commonjs/extensions/meshes/examples.js +9 -9
- package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -6
- package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
- package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
- package/lib/commonjs/extensions/model-export/export.js +2 -2
- package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
- package/lib/commonjs/extensions/mp4-export/encoder.js +1 -2
- package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/mvs/camera.js +4 -5
- package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -32
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
- package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
- package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
- package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
- package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
- package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
- package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
- package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
- package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
- package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
- package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
- package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
- package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
- package/lib/commonjs/extensions/mvs/load.js +1 -2
- package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
- package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
- package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
- package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
- package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -8
- package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
- package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +2 -3
- package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +2 -2
- package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +6 -6
- package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +3 -3
- package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +2 -2
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
- package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
- package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
- package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +9 -1
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +7 -2
- package/lib/commonjs/mol-canvas3d/util.js +3 -4
- package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
- package/lib/commonjs/mol-data/db/column.d.ts +1 -1
- package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
- package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
- package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
- package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
- package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
- package/lib/commonjs/mol-data/int/linked-index.js +1 -2
- package/lib/commonjs/mol-data/util/array.js +5 -6
- package/lib/commonjs/mol-data/util/buckets.js +1 -2
- package/lib/commonjs/mol-data/util/combination.js +2 -2
- package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
- package/lib/commonjs/mol-data/util/grouping.js +2 -3
- package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
- package/lib/commonjs/mol-data/util/sort.js +5 -6
- package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/base.js +3 -3
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
- package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
- package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
- package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
- package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
- package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
- package/lib/commonjs/mol-geo/primitive/box.js +3 -4
- package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
- package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
- package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
- package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
- package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
- package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
- package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
- package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
- package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
- package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
- package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
- package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
- package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
- package/lib/commonjs/mol-geo/primitive/star.js +2 -2
- package/lib/commonjs/mol-geo/primitive/tetrahedron.js +3 -3
- package/lib/commonjs/mol-geo/primitive/torus.js +2 -2
- package/lib/commonjs/mol-geo/primitive/wedge.js +3 -4
- package/lib/commonjs/mol-geo/util/location-iterator.js +3 -4
- package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +2 -3
- package/lib/commonjs/mol-geo/util/marching-cubes/builder.js +2 -3
- package/lib/commonjs/mol-geo/util/marching-cubes/tables.js +3 -3
- package/lib/commonjs/mol-geo/util.js +7 -8
- package/lib/commonjs/mol-gl/compute/grid3d.js +2 -3
- package/lib/commonjs/mol-gl/compute/hi-z.js +1 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +1 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +1 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +2 -3
- package/lib/commonjs/mol-gl/compute/marching-cubes/tables.js +2 -3
- package/lib/commonjs/mol-gl/compute/util.js +5 -5
- package/lib/commonjs/mol-gl/render-object.js +3 -3
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -2
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -2
- package/lib/commonjs/mol-gl/renderable/image.js +2 -2
- package/lib/commonjs/mol-gl/renderable/lines.js +2 -2
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/mesh.js +3 -2
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- package/lib/mol-gl/shader/spheres.frag.js +148 -148
- package/lib/mol-gl/shader/spheres.vert.js +132 -132
- package/lib/mol-gl/shader/ssao-blur.frag.d.ts +1 -1
- package/lib/mol-gl/shader/ssao-blur.frag.js +100 -97
- package/lib/mol-gl/shader/ssao.frag.js +211 -211
- package/lib/mol-gl/shader/text.frag.js +85 -85
- package/lib/mol-gl/shader/text.vert.js +85 -85
- package/lib/mol-gl/shader/util/grid3d-template.frag.js +46 -46
- package/lib/mol-gl/shader-code.js +16 -16
- package/lib/mol-gl/webgl/compat.js +12 -12
- package/lib/mol-gl/webgl/render-item.d.ts +2 -2
- package/lib/mol-io/common/simple-buffer.d.ts +0 -1
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +9 -1
- package/lib/mol-io/reader/cif/schema/mmcif.js +9 -1
- package/lib/mol-io/reader/common/text/column/fixed.d.ts +1 -1
- package/lib/mol-io/reader/common/text/column/token.d.ts +1 -1
- package/lib/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/mol-model/loci.d.ts +1 -1
- package/lib/mol-model/sequence/alignment/alignment.d.ts +2 -1
- package/lib/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/mol-model/structure/model/types.d.ts +3 -3
- package/lib/mol-model/structure/query/queries/generators.js +2 -2
- package/lib/mol-model/structure/structure/properties.d.ts +1 -0
- package/lib/mol-model/structure/structure/properties.js +1 -0
- package/lib/mol-model/volume/volume.d.ts +6 -6
- package/lib/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/mol-model-formats/structure/basic/schema.d.ts +1 -0
- package/lib/mol-model-formats/structure/common/entity.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/mol-model-props/sequence/themes/sifts-mapping.d.ts +2 -2
- package/lib/mol-plugin/behavior/behavior.d.ts +9 -9
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +3 -3
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +4 -4
- package/lib/mol-plugin/commands.d.ts +23 -87
- package/lib/mol-plugin/context.d.ts +3 -2
- package/lib/mol-plugin/context.js +4 -2
- package/lib/mol-plugin/state.d.ts +7 -7
- package/lib/mol-plugin/util/headless-screenshot.d.ts +1 -1
- package/lib/mol-plugin/util/headless-screenshot.js +3 -1
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +1 -1
- package/lib/mol-plugin/util/viewport-screenshot.js +2 -1
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/volume.d.ts +1 -1
- package/lib/mol-plugin-state/actions/volume.js +4 -12
- package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +2 -2
- package/lib/mol-plugin-state/formats/registry.d.ts +1 -1
- package/lib/mol-plugin-state/formats/trajectory.d.ts +9 -9
- package/lib/mol-plugin-state/formats/volume.d.ts +0 -1
- package/lib/mol-plugin-state/manager/structure/hierarchy.d.ts +3 -3
- package/lib/mol-plugin-state/manager/structure/measurement.d.ts +4 -0
- package/lib/mol-plugin-state/objects.d.ts +97 -97
- package/lib/mol-plugin-state/transforms/data.d.ts +10 -1
- package/lib/mol-plugin-state/transforms/data.js +30 -1
- package/lib/mol-plugin-state/transforms/representation.d.ts +6 -0
- package/lib/mol-plugin-ui/base.js +2 -1
- package/lib/mol-plugin-ui/controls/icons.d.ts +5 -0
- package/lib/mol-plugin-ui/controls/icons.js +10 -0
- package/lib/mol-plugin-ui/controls/parameters.d.ts +3 -3
- package/lib/mol-plugin-ui/controls.js +1 -1
- package/lib/mol-plugin-ui/left-panel.d.ts +0 -1
- package/lib/mol-plugin-ui/plugin.js +3 -2
- package/lib/mol-plugin-ui/skin/base/base.scss +37 -37
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +451 -445
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +663 -663
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +194 -194
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +88 -88
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-plugin-ui/spec.d.ts +10 -10
- package/lib/mol-plugin-ui/spec.js +1 -1
- package/lib/mol-plugin-ui/state/apply-action.d.ts +1 -1
- package/lib/mol-plugin-ui/state/update-transform.d.ts +1 -1
- package/lib/mol-plugin-ui/structure/quick-styles.d.ts +2 -1
- package/lib/mol-plugin-ui/structure/quick-styles.js +5 -2
- package/lib/mol-plugin-ui/structure/selection.d.ts +2 -2
- package/lib/mol-repr/representation.d.ts +3 -3
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/mol-repr/structure/complex-visual.d.ts +5 -0
- package/lib/mol-repr/structure/params.d.ts +5 -0
- package/lib/mol-repr/structure/registry.d.ts +11 -0
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/mol-repr/structure/units-visual.d.ts +5 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/util/nucleotide.d.ts +60 -60
- package/lib/mol-repr/volume/direct-volume.d.ts +48 -45
- package/lib/mol-repr/volume/isosurface.d.ts +95 -90
- package/lib/mol-repr/volume/registry.d.ts +63 -60
- package/lib/mol-repr/volume/segment.d.ts +80 -75
- package/lib/mol-repr/volume/slice.d.ts +45 -45
- package/lib/mol-script/language/symbol-table/core.d.ts +1 -1
- package/lib/mol-state/object.d.ts +4 -4
- package/lib/mol-state/state.d.ts +4 -4
- package/lib/mol-state/transform.d.ts +1 -1
- package/lib/mol-state/transformer.d.ts +1 -1
- package/lib/mol-task/util/scheduler.d.ts +0 -1
- package/lib/mol-theme/color/atom-id.d.ts +2 -2
- package/lib/mol-theme/color/chain-id.d.ts +2 -2
- package/lib/mol-theme/color/element-index.d.ts +2 -2
- package/lib/mol-theme/color/entity-id.d.ts +2 -2
- package/lib/mol-theme/color/entity-source.d.ts +2 -2
- package/lib/mol-theme/color/external-volume.d.ts +2 -2
- package/lib/mol-theme/color/model-index.d.ts +2 -2
- package/lib/mol-theme/color/operator-hkl.d.ts +2 -2
- package/lib/mol-theme/color/operator-name.d.ts +2 -2
- package/lib/mol-theme/color/polymer-id.d.ts +2 -2
- package/lib/mol-theme/color/polymer-index.d.ts +2 -2
- package/lib/mol-theme/color/structure-index.d.ts +2 -2
- package/lib/mol-theme/color/trajectory-index.d.ts +2 -2
- package/lib/mol-theme/color/unit-index.d.ts +2 -2
- package/lib/mol-theme/color/volume-segment.d.ts +2 -2
- package/lib/mol-theme/color.d.ts +16 -16
- package/lib/mol-theme/theme.d.ts +3 -3
- package/lib/mol-util/color/palette.d.ts +4 -3
- package/lib/mol-util/color/scale.d.ts +2 -1
- package/lib/mol-util/data-source.d.ts +0 -1
- package/lib/mol-util/nodejs-shims.d.ts +1 -1
- package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
- package/lib/servers/model/config.d.ts +4 -4
- package/lib/servers/model/utils/tar.d.ts +0 -1
- package/lib/servers/volume/common/binary-schema.d.ts +0 -1
- package/lib/servers/volume/common/data-format.d.ts +0 -1
- package/lib/servers/volume/config.d.ts +1 -5
- package/lib/servers/volume/config.js +5 -5
- package/package.json +197 -196
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C1_1: ElementIndex | -1;
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C2_1: ElementIndex | -1;
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C3_1: ElementIndex | -1;
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C4_1: ElementIndex | -1;
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O4_1: ElementIndex | -1;
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export declare function hasPurinIndices(idx: NucleicIndices): idx is NucleicIndices & {
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@@ -70,21 +70,21 @@ export declare function hasPurinIndices(idx: NucleicIndices): idx is NucleicIndi
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N9: ElementIndex;
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};
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export declare function setPyrimidineIndices(idx: NucleicIndices, unit: Unit.Atomic, residueIndex: ResidueIndex): {
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trace:
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N1:
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C2:
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N3:
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C4:
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C5:
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C6:
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C8:
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C1_1:
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C2_1:
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C3_1:
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C4_1:
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O4_1:
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trace: ElementIndex | -1;
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N1: ElementIndex | -1;
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C2: ElementIndex | -1;
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N3: ElementIndex | -1;
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C4: ElementIndex | -1;
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+
C5: ElementIndex | -1;
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C6: ElementIndex | -1;
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N7: ElementIndex | -1;
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C8: ElementIndex | -1;
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N9: ElementIndex | -1;
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C1_1: ElementIndex | -1;
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C2_1: ElementIndex | -1;
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C3_1: ElementIndex | -1;
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C4_1: ElementIndex | -1;
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O4_1: ElementIndex | -1;
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};
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export declare function hasPyrimidineIndices(idx: NucleicIndices): idx is NucleicIndices & {
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trace: ElementIndex;
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@@ -96,21 +96,21 @@ export declare function hasPyrimidineIndices(idx: NucleicIndices): idx is Nuclei
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C6: ElementIndex;
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};
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export declare function setSugarIndices(idx: NucleicIndices, unit: Unit.Atomic, residueIndex: ResidueIndex): {
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trace:
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N1:
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C2:
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N3:
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C4:
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C5:
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C6:
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N7:
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C8:
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N9:
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C1_1:
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C2_1:
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C3_1:
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C4_1:
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O4_1:
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+
trace: ElementIndex | -1;
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+
N1: ElementIndex | -1;
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+
C2: ElementIndex | -1;
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+
N3: ElementIndex | -1;
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+
C4: ElementIndex | -1;
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+
C5: ElementIndex | -1;
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+
C6: ElementIndex | -1;
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+
N7: ElementIndex | -1;
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+
C8: ElementIndex | -1;
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+
N9: ElementIndex | -1;
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+
C1_1: ElementIndex | -1;
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+
C2_1: ElementIndex | -1;
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+
C3_1: ElementIndex | -1;
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+
C4_1: ElementIndex | -1;
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+
O4_1: ElementIndex | -1;
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};
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export declare function hasSugarIndices(idx: NucleicIndices): idx is NucleicIndices & {
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trace: ElementIndex;
|
|
@@ -27,26 +27,27 @@ export declare const DirectVolumeParams: {
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isEssential: boolean;
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type: "select";
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options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
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cycle?: boolean
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isOptional?: boolean
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+
cycle?: boolean;
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isOptional?: boolean;
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defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
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label?: string
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description?: string
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legend?: import("../../mol-util/legend").Legend
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+
label?: string;
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+
description?: string;
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|
+
legend?: import("../../mol-util/legend").Legend;
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fieldLabels?: {
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[name: string]: string;
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|
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}
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|
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isHidden?: boolean
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|
-
shortLabel?: boolean
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|
-
twoColumns?: boolean
|
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|
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category?: string
|
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|
-
hideIf?: (
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|
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help?: (
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description?: string
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legend?: import("../../mol-util/legend").Legend
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|
-
}
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|
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|
+
};
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|
+
isHidden?: boolean;
|
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|
+
shortLabel?: boolean;
|
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41
|
+
twoColumns?: boolean;
|
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|
+
category?: string;
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|
+
hideIf?: (currentGroup: any) => boolean;
|
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|
+
help?: (value: any) => {
|
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|
+
description?: string;
|
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|
+
legend?: import("../../mol-util/legend").Legend;
|
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|
+
};
|
|
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|
};
|
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49
|
ignoreLight: PD.BooleanParam;
|
|
50
|
+
celShaded: PD.BooleanParam;
|
|
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|
xrayShaded: PD.Select<boolean | "inverted">;
|
|
51
52
|
controlPoints: PD.LineGraph;
|
|
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|
stepsPerCell: PD.Numeric;
|
|
@@ -79,26 +80,27 @@ export declare function getDirectVolumeParams(ctx: ThemeRegistryContext, volume:
|
|
|
79
80
|
isEssential: boolean;
|
|
80
81
|
type: "select";
|
|
81
82
|
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
|
|
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|
-
cycle?: boolean
|
|
83
|
-
isOptional?: boolean
|
|
83
|
+
cycle?: boolean;
|
|
84
|
+
isOptional?: boolean;
|
|
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85
|
defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
|
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|
-
label?: string
|
|
86
|
-
description?: string
|
|
87
|
-
legend?: import("../../mol-util/legend").Legend
|
|
86
|
+
label?: string;
|
|
87
|
+
description?: string;
|
|
88
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
88
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|
fieldLabels?: {
|
|
89
90
|
[name: string]: string;
|
|
90
|
-
}
|
|
91
|
-
isHidden?: boolean
|
|
92
|
-
shortLabel?: boolean
|
|
93
|
-
twoColumns?: boolean
|
|
94
|
-
category?: string
|
|
95
|
-
hideIf?: (
|
|
96
|
-
help?: (
|
|
97
|
-
description?: string
|
|
98
|
-
legend?: import("../../mol-util/legend").Legend
|
|
99
|
-
}
|
|
91
|
+
};
|
|
92
|
+
isHidden?: boolean;
|
|
93
|
+
shortLabel?: boolean;
|
|
94
|
+
twoColumns?: boolean;
|
|
95
|
+
category?: string;
|
|
96
|
+
hideIf?: (currentGroup: any) => boolean;
|
|
97
|
+
help?: (value: any) => {
|
|
98
|
+
description?: string;
|
|
99
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
100
|
+
};
|
|
100
101
|
};
|
|
101
102
|
ignoreLight: PD.BooleanParam;
|
|
103
|
+
celShaded: PD.BooleanParam;
|
|
102
104
|
xrayShaded: PD.Select<boolean | "inverted">;
|
|
103
105
|
controlPoints: PD.LineGraph;
|
|
104
106
|
stepsPerCell: PD.Numeric;
|
|
@@ -133,26 +135,27 @@ export declare const DirectVolumeRepresentationProvider: VolumeRepresentationPro
|
|
|
133
135
|
isEssential: boolean;
|
|
134
136
|
type: "select";
|
|
135
137
|
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
|
|
136
|
-
cycle?: boolean
|
|
137
|
-
isOptional?: boolean
|
|
138
|
+
cycle?: boolean;
|
|
139
|
+
isOptional?: boolean;
|
|
138
140
|
defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
|
139
|
-
label?: string
|
|
140
|
-
description?: string
|
|
141
|
-
legend?: import("../../mol-util/legend").Legend
|
|
141
|
+
label?: string;
|
|
142
|
+
description?: string;
|
|
143
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
142
144
|
fieldLabels?: {
|
|
143
145
|
[name: string]: string;
|
|
144
|
-
}
|
|
145
|
-
isHidden?: boolean
|
|
146
|
-
shortLabel?: boolean
|
|
147
|
-
twoColumns?: boolean
|
|
148
|
-
category?: string
|
|
149
|
-
hideIf?: (
|
|
150
|
-
help?: (
|
|
151
|
-
description?: string
|
|
152
|
-
legend?: import("../../mol-util/legend").Legend
|
|
153
|
-
}
|
|
146
|
+
};
|
|
147
|
+
isHidden?: boolean;
|
|
148
|
+
shortLabel?: boolean;
|
|
149
|
+
twoColumns?: boolean;
|
|
150
|
+
category?: string;
|
|
151
|
+
hideIf?: (currentGroup: any) => boolean;
|
|
152
|
+
help?: (value: any) => {
|
|
153
|
+
description?: string;
|
|
154
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
155
|
+
};
|
|
154
156
|
};
|
|
155
157
|
ignoreLight: PD.BooleanParam;
|
|
158
|
+
celShaded: PD.BooleanParam;
|
|
156
159
|
xrayShaded: PD.Select<boolean | "inverted">;
|
|
157
160
|
controlPoints: PD.LineGraph;
|
|
158
161
|
stepsPerCell: PD.Numeric;
|
|
@@ -46,24 +46,24 @@ export declare function IsosurfaceVisual(materialId: number, volume: Volume, key
|
|
|
46
46
|
isEssential: boolean;
|
|
47
47
|
type: "select";
|
|
48
48
|
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
|
|
49
|
-
cycle?: boolean
|
|
50
|
-
isOptional?: boolean
|
|
49
|
+
cycle?: boolean;
|
|
50
|
+
isOptional?: boolean;
|
|
51
51
|
defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
|
52
|
-
label?: string
|
|
53
|
-
description?: string
|
|
54
|
-
legend?: import("../../mol-util/legend").Legend
|
|
52
|
+
label?: string;
|
|
53
|
+
description?: string;
|
|
54
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
55
55
|
fieldLabels?: {
|
|
56
56
|
[name: string]: string;
|
|
57
|
-
}
|
|
58
|
-
isHidden?: boolean
|
|
59
|
-
shortLabel?: boolean
|
|
60
|
-
twoColumns?: boolean
|
|
61
|
-
category?: string
|
|
62
|
-
hideIf?: (
|
|
63
|
-
help?: (
|
|
64
|
-
description?: string
|
|
65
|
-
legend?: import("../../mol-util/legend").Legend
|
|
66
|
-
}
|
|
57
|
+
};
|
|
58
|
+
isHidden?: boolean;
|
|
59
|
+
shortLabel?: boolean;
|
|
60
|
+
twoColumns?: boolean;
|
|
61
|
+
category?: string;
|
|
62
|
+
hideIf?: (currentGroup: any) => boolean;
|
|
63
|
+
help?: (value: any) => {
|
|
64
|
+
description?: string;
|
|
65
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
66
|
+
};
|
|
67
67
|
};
|
|
68
68
|
tryUseGpu: PD.BooleanParam;
|
|
69
69
|
isoValue: PD.Conditioned<Readonly<{
|
|
@@ -92,6 +92,7 @@ export declare function IsosurfaceVisual(materialId: number, volume: Volume, key
|
|
|
92
92
|
flipSided: PD.BooleanParam;
|
|
93
93
|
flatShaded: PD.BooleanParam;
|
|
94
94
|
ignoreLight: PD.BooleanParam;
|
|
95
|
+
celShaded: PD.BooleanParam;
|
|
95
96
|
xrayShaded: PD.Select<boolean | "inverted">;
|
|
96
97
|
transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
|
|
97
98
|
bumpFrequency: PD.Numeric;
|
|
@@ -125,24 +126,24 @@ export declare const IsosurfaceMeshParams: {
|
|
|
125
126
|
isEssential: boolean;
|
|
126
127
|
type: "select";
|
|
127
128
|
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
|
|
128
|
-
cycle?: boolean
|
|
129
|
-
isOptional?: boolean
|
|
129
|
+
cycle?: boolean;
|
|
130
|
+
isOptional?: boolean;
|
|
130
131
|
defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
|
131
|
-
label?: string
|
|
132
|
-
description?: string
|
|
133
|
-
legend?: import("../../mol-util/legend").Legend
|
|
132
|
+
label?: string;
|
|
133
|
+
description?: string;
|
|
134
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
134
135
|
fieldLabels?: {
|
|
135
136
|
[name: string]: string;
|
|
136
|
-
}
|
|
137
|
-
isHidden?: boolean
|
|
138
|
-
shortLabel?: boolean
|
|
139
|
-
twoColumns?: boolean
|
|
140
|
-
category?: string
|
|
141
|
-
hideIf?: (
|
|
142
|
-
help?: (
|
|
143
|
-
description?: string
|
|
144
|
-
legend?: import("../../mol-util/legend").Legend
|
|
145
|
-
}
|
|
137
|
+
};
|
|
138
|
+
isHidden?: boolean;
|
|
139
|
+
shortLabel?: boolean;
|
|
140
|
+
twoColumns?: boolean;
|
|
141
|
+
category?: string;
|
|
142
|
+
hideIf?: (currentGroup: any) => boolean;
|
|
143
|
+
help?: (value: any) => {
|
|
144
|
+
description?: string;
|
|
145
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
146
|
+
};
|
|
146
147
|
};
|
|
147
148
|
tryUseGpu: PD.BooleanParam;
|
|
148
149
|
isoValue: PD.Conditioned<Readonly<{
|
|
@@ -171,6 +172,7 @@ export declare const IsosurfaceMeshParams: {
|
|
|
171
172
|
flipSided: PD.BooleanParam;
|
|
172
173
|
flatShaded: PD.BooleanParam;
|
|
173
174
|
ignoreLight: PD.BooleanParam;
|
|
175
|
+
celShaded: PD.BooleanParam;
|
|
174
176
|
xrayShaded: PD.Select<boolean | "inverted">;
|
|
175
177
|
transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
|
|
176
178
|
bumpFrequency: PD.Numeric;
|
|
@@ -206,24 +208,24 @@ export declare const IsosurfaceWireframeParams: {
|
|
|
206
208
|
isEssential: boolean;
|
|
207
209
|
type: "select";
|
|
208
210
|
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
|
|
209
|
-
cycle?: boolean
|
|
210
|
-
isOptional?: boolean
|
|
211
|
+
cycle?: boolean;
|
|
212
|
+
isOptional?: boolean;
|
|
211
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|
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type: "select";
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options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
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sizeFactor: PD.Numeric;
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@@ -349,6 +351,7 @@ export declare const IsosurfaceParams: {
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flatShaded: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpAmplitude: PD.Numeric;
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|
@@ -361,24 +364,24 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
|
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isEssential: boolean;
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|
type: "select";
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|
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
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|
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|
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cycle?: boolean
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|
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|
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isOptional?: boolean
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|
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|
+
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|
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|
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|
defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
|
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|
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|
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|
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|
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legend?: import("../../mol-util/legend").Legend
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|
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|
+
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|
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|
+
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|
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|
+
legend?: import("../../mol-util/legend").Legend;
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|
fieldLabels?: {
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|
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|
[name: string]: string;
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|
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|
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}
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|
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|
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|
-
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|
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|
-
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|
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|
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|
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|
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|
|
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|
-
help?: (
|
|
379
|
-
description?: string
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|
380
|
-
legend?: import("../../mol-util/legend").Legend
|
|
381
|
-
}
|
|
375
|
+
};
|
|
376
|
+
isHidden?: boolean;
|
|
377
|
+
shortLabel?: boolean;
|
|
378
|
+
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|
|
379
|
+
category?: string;
|
|
380
|
+
hideIf?: (currentGroup: any) => boolean;
|
|
381
|
+
help?: (value: any) => {
|
|
382
|
+
description?: string;
|
|
383
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
384
|
+
};
|
|
382
385
|
};
|
|
383
386
|
sizeFactor: PD.Numeric;
|
|
384
387
|
isoValue: PD.Conditioned<Readonly<{
|
|
@@ -430,6 +433,7 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
|
|
|
430
433
|
flipSided: PD.BooleanParam;
|
|
431
434
|
flatShaded: PD.BooleanParam;
|
|
432
435
|
ignoreLight: PD.BooleanParam;
|
|
436
|
+
celShaded: PD.BooleanParam;
|
|
433
437
|
xrayShaded: PD.Select<boolean | "inverted">;
|
|
434
438
|
transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
|
|
435
439
|
bumpAmplitude: PD.Numeric;
|
|
@@ -443,24 +447,24 @@ export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvi
|
|
|
443
447
|
isEssential: boolean;
|
|
444
448
|
type: "select";
|
|
445
449
|
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
|
|
446
|
-
cycle?: boolean
|
|
447
|
-
isOptional?: boolean
|
|
450
|
+
cycle?: boolean;
|
|
451
|
+
isOptional?: boolean;
|
|
448
452
|
defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
|
449
|
-
label?: string
|
|
450
|
-
description?: string
|
|
451
|
-
legend?: import("../../mol-util/legend").Legend
|
|
453
|
+
label?: string;
|
|
454
|
+
description?: string;
|
|
455
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
452
456
|
fieldLabels?: {
|
|
453
457
|
[name: string]: string;
|
|
454
|
-
}
|
|
455
|
-
isHidden?: boolean
|
|
456
|
-
shortLabel?: boolean
|
|
457
|
-
twoColumns?: boolean
|
|
458
|
-
category?: string
|
|
459
|
-
hideIf?: (
|
|
460
|
-
help?: (
|
|
461
|
-
description?: string
|
|
462
|
-
legend?: import("../../mol-util/legend").Legend
|
|
463
|
-
}
|
|
458
|
+
};
|
|
459
|
+
isHidden?: boolean;
|
|
460
|
+
shortLabel?: boolean;
|
|
461
|
+
twoColumns?: boolean;
|
|
462
|
+
category?: string;
|
|
463
|
+
hideIf?: (currentGroup: any) => boolean;
|
|
464
|
+
help?: (value: any) => {
|
|
465
|
+
description?: string;
|
|
466
|
+
legend?: import("../../mol-util/legend").Legend;
|
|
467
|
+
};
|
|
464
468
|
};
|
|
465
469
|
sizeFactor: PD.Numeric;
|
|
466
470
|
isoValue: PD.Conditioned<Readonly<{
|
|
@@ -512,6 +516,7 @@ export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvi
|
|
|
512
516
|
flipSided: PD.BooleanParam;
|
|
513
517
|
flatShaded: PD.BooleanParam;
|
|
514
518
|
ignoreLight: PD.BooleanParam;
|
|
519
|
+
celShaded: PD.BooleanParam;
|
|
515
520
|
xrayShaded: PD.Select<boolean | "inverted">;
|
|
516
521
|
transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
|
|
517
522
|
bumpAmplitude: PD.Numeric;
|