molstar 4.3.0 → 4.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1384) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  8. package/lib/apps/docking-viewer/index.html +36 -36
  9. package/lib/apps/docking-viewer/viewport.d.ts +1 -1
  10. package/lib/apps/docking-viewer/viewport.js +2 -1
  11. package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
  12. package/lib/apps/mesoscale-explorer/app.js +12 -1
  13. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  14. package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
  15. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  16. package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
  17. package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  18. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
  19. package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  20. package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
  21. package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
  22. package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  23. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
  24. package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  25. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
  26. package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
  27. package/lib/apps/mesoscale-explorer/data/state.js +83 -8
  28. package/lib/apps/mesoscale-explorer/index.html +106 -101
  29. package/lib/apps/mesoscale-explorer/style.scss +66 -33
  30. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  31. package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
  32. package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  33. package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
  34. package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  35. package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
  36. package/lib/apps/viewer/app.d.ts +10 -4
  37. package/lib/apps/viewer/app.js +28 -0
  38. package/lib/apps/viewer/embedded.html +52 -52
  39. package/lib/apps/viewer/index.html +129 -129
  40. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  41. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  42. package/lib/cli/cifschema/util/generate.js +12 -12
  43. package/lib/cli/lipid-params/index.js +9 -9
  44. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
  45. package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
  46. package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
  48. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  49. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
  50. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  51. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
  52. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  53. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
  54. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  55. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
  56. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
  57. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  58. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
  59. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  60. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
  61. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
  62. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
  63. package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
  64. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  65. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
  66. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  67. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
  68. package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  69. package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
  70. package/lib/commonjs/apps/viewer/app.d.ts +10 -4
  71. package/lib/commonjs/apps/viewer/app.js +28 -0
  72. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  73. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  74. package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
  75. package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
  76. package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
  77. package/lib/commonjs/cli/cifschema/util/generate.js +13 -14
  78. package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
  79. package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
  80. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  81. package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
  82. package/lib/commonjs/cli/structure-info/helpers.js +2 -3
  83. package/lib/commonjs/cli/structure-info/model.js +11 -12
  84. package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
  85. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  86. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
  87. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  88. package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
  89. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  90. package/lib/commonjs/examples/lighting/index.js +2 -1
  91. package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
  92. package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
  93. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
  94. package/lib/commonjs/examples/task.js +6 -6
  95. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
  96. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
  97. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
  98. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
  99. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  100. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
  101. package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
  102. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
  103. package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
  104. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  105. package/lib/commonjs/extensions/anvil/behavior.js +2 -2
  106. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  107. package/lib/commonjs/extensions/anvil/representation.js +3 -3
  108. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
  109. package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
  110. package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
  111. package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
  112. package/lib/commonjs/extensions/assembly-symmetry/prop.js +27 -27
  113. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  114. package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
  115. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  116. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
  117. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  118. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
  119. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +7 -7
  120. package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
  121. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  122. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
  123. package/lib/commonjs/extensions/g3d/data.js +2 -3
  124. package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
  125. package/lib/commonjs/extensions/g3d/model.js +5 -5
  126. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
  127. package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
  128. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  129. package/lib/commonjs/extensions/meshes/examples.js +9 -9
  130. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -6
  131. package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
  132. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
  133. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
  134. package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
  135. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
  136. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
  137. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
  138. package/lib/commonjs/extensions/model-export/export.js +2 -2
  139. package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
  140. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
  141. package/lib/commonjs/extensions/mp4-export/encoder.js +1 -2
  142. package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
  143. package/lib/commonjs/extensions/mvs/camera.js +4 -5
  144. package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
  145. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -32
  146. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
  147. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
  148. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
  149. package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
  150. package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
  151. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
  152. package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
  153. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
  154. package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
  155. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
  156. package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
  157. package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
  158. package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
  159. package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
  160. package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
  161. package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
  162. package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
  163. package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
  164. package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
  165. package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
  166. package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
  167. package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
  168. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  169. package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
  170. package/lib/commonjs/extensions/mvs/load.js +1 -2
  171. package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
  172. package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
  173. package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
  174. package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
  175. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -8
  176. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
  177. package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
  178. package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
  179. package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
  180. package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
  181. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  182. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
  183. package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
  184. package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
  185. package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
  186. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +2 -3
  187. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +2 -2
  188. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +6 -6
  189. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +3 -3
  190. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +2 -2
  191. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
  192. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
  193. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
  194. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
  195. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
  196. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
  197. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
  198. package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
  199. package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
  200. package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
  201. package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
  202. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +9 -1
  203. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
  204. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  205. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  206. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  207. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  208. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -0
  209. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
  210. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
  211. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  212. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +7 -2
  213. package/lib/commonjs/mol-canvas3d/util.js +3 -4
  214. package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
  215. package/lib/commonjs/mol-data/db/column.d.ts +1 -1
  216. package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
  217. package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
  218. package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
  219. package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
  220. package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
  221. package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
  222. package/lib/commonjs/mol-data/int/linked-index.js +1 -2
  223. package/lib/commonjs/mol-data/util/array.js +5 -6
  224. package/lib/commonjs/mol-data/util/buckets.js +1 -2
  225. package/lib/commonjs/mol-data/util/combination.js +2 -2
  226. package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
  227. package/lib/commonjs/mol-data/util/grouping.js +2 -3
  228. package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
  229. package/lib/commonjs/mol-data/util/sort.js +5 -6
  230. package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
  231. package/lib/commonjs/mol-geo/geometry/base.js +3 -3
  232. package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
  233. package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
  234. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
  235. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
  236. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
  237. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
  238. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
  239. package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
  240. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
  241. package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
  242. package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
  243. package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
  244. package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
  245. package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
  246. package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
  247. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
  248. package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
  249. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
  250. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
  251. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
  252. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
  253. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
  254. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  255. package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
  256. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  257. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
  258. package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
  259. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
  260. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
  261. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
  262. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
  263. package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
  264. package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
  265. package/lib/commonjs/mol-geo/primitive/box.js +3 -4
  266. package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
  267. package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
  268. package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
  269. package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
  270. package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
  271. package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
  272. package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
  273. package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
  274. package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
  275. package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
  276. package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
  277. package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
  278. package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
  279. package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
  280. package/lib/commonjs/mol-geo/primitive/star.js +2 -2
  281. package/lib/commonjs/mol-geo/primitive/tetrahedron.js +3 -3
  282. package/lib/commonjs/mol-geo/primitive/torus.js +2 -2
  283. package/lib/commonjs/mol-geo/primitive/wedge.js +3 -4
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  1383. package/lib/servers/volume/config.js +5 -5
  1384. package/package.json +197 -196
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.LineRepresentationProvider = exports.LineRepresentation = exports.getLineParams = exports.LineParams = void 0;
8
+ exports.LineRepresentationProvider = exports.LineParams = void 0;
9
+ exports.getLineParams = getLineParams;
10
+ exports.LineRepresentation = LineRepresentation;
9
11
  const bond_intra_unit_line_1 = require("../visual/bond-intra-unit-line");
10
12
  const bond_inter_unit_line_1 = require("../visual/bond-inter-unit-line");
11
13
  const param_definition_1 = require("../../../mol-util/param-definition");
@@ -47,11 +49,9 @@ function getLineParams(ctx, structure) {
47
49
  return exports.LineParams;
48
50
  }
49
51
  }
50
- exports.getLineParams = getLineParams;
51
52
  function LineRepresentation(ctx, getParams) {
52
53
  return representation_2.Representation.createMulti('Line', ctx, getParams, representation_1.StructureRepresentationStateBuilder, LineVisuals);
53
54
  }
54
- exports.LineRepresentation = LineRepresentation;
55
55
  exports.LineRepresentationProvider = (0, representation_1.StructureRepresentationProvider)({
56
56
  name: 'line',
57
57
  label: 'Line',
@@ -51,6 +51,7 @@ export declare const MolecularSurfaceParams: {
51
51
  flipSided: PD.BooleanParam;
52
52
  flatShaded: PD.BooleanParam;
53
53
  ignoreLight: PD.BooleanParam;
54
+ celShaded: PD.BooleanParam;
54
55
  xrayShaded: PD.Select<boolean | "inverted">;
55
56
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
56
57
  bumpAmplitude: PD.Numeric;
@@ -99,6 +100,7 @@ export declare function getMolecularSurfaceParams(ctx: ThemeRegistryContext, str
99
100
  flipSided: PD.BooleanParam;
100
101
  flatShaded: PD.BooleanParam;
101
102
  ignoreLight: PD.BooleanParam;
103
+ celShaded: PD.BooleanParam;
102
104
  xrayShaded: PD.Select<boolean | "inverted">;
103
105
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
104
106
  bumpAmplitude: PD.Numeric;
@@ -148,6 +150,7 @@ export declare const MolecularSurfaceRepresentationProvider: StructureRepresenta
148
150
  flipSided: PD.BooleanParam;
149
151
  flatShaded: PD.BooleanParam;
150
152
  ignoreLight: PD.BooleanParam;
153
+ celShaded: PD.BooleanParam;
151
154
  xrayShaded: PD.Select<boolean | "inverted">;
152
155
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
153
156
  bumpAmplitude: PD.Numeric;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.MolecularSurfaceRepresentationProvider = exports.MolecularSurfaceRepresentation = exports.getMolecularSurfaceParams = exports.MolecularSurfaceParams = void 0;
8
+ exports.MolecularSurfaceRepresentationProvider = exports.MolecularSurfaceParams = void 0;
9
+ exports.getMolecularSurfaceParams = getMolecularSurfaceParams;
10
+ exports.MolecularSurfaceRepresentation = MolecularSurfaceRepresentation;
9
11
  const molecular_surface_mesh_1 = require("../visual/molecular-surface-mesh");
10
12
  const units_representation_1 = require("../units-representation");
11
13
  const param_definition_1 = require("../../../mol-util/param-definition");
@@ -27,11 +29,9 @@ exports.MolecularSurfaceParams = {
27
29
  function getMolecularSurfaceParams(ctx, structure) {
28
30
  return exports.MolecularSurfaceParams;
29
31
  }
30
- exports.getMolecularSurfaceParams = getMolecularSurfaceParams;
31
32
  function MolecularSurfaceRepresentation(ctx, getParams) {
32
33
  return representation_2.Representation.createMulti('Molecular Surface', ctx, getParams, representation_1.StructureRepresentationStateBuilder, MolecularSurfaceVisuals);
33
34
  }
34
- exports.MolecularSurfaceRepresentation = MolecularSurfaceRepresentation;
35
35
  exports.MolecularSurfaceRepresentationProvider = (0, representation_1.StructureRepresentationProvider)({
36
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  name: 'molecular-surface',
37
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  label: 'Molecular Surface',
@@ -19,6 +19,7 @@ export declare const OrientationParams: {
19
19
  flipSided: PD.BooleanParam;
20
20
  flatShaded: PD.BooleanParam;
21
21
  ignoreLight: PD.BooleanParam;
22
+ celShaded: PD.BooleanParam;
22
23
  xrayShaded: PD.Select<boolean | "inverted">;
23
24
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
24
25
  bumpAmplitude: PD.Numeric;
@@ -57,6 +58,7 @@ export declare function getOrientationParams(ctx: ThemeRegistryContext, structur
57
58
  flipSided: PD.BooleanParam;
58
59
  flatShaded: PD.BooleanParam;
59
60
  ignoreLight: PD.BooleanParam;
61
+ celShaded: PD.BooleanParam;
60
62
  xrayShaded: PD.Select<boolean | "inverted">;
61
63
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
62
64
  bumpAmplitude: PD.Numeric;
@@ -96,6 +98,7 @@ export declare const OrientationRepresentationProvider: StructureRepresentationP
96
98
  flipSided: PD.BooleanParam;
97
99
  flatShaded: PD.BooleanParam;
98
100
  ignoreLight: PD.BooleanParam;
101
+ celShaded: PD.BooleanParam;
99
102
  xrayShaded: PD.Select<boolean | "inverted">;
100
103
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
101
104
  bumpAmplitude: PD.Numeric;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.OrientationRepresentationProvider = exports.OrientationRepresentation = exports.getOrientationParams = exports.OrientationParams = void 0;
8
+ exports.OrientationRepresentationProvider = exports.OrientationParams = void 0;
9
+ exports.getOrientationParams = getOrientationParams;
10
+ exports.OrientationRepresentation = OrientationRepresentation;
9
11
  const units_representation_1 = require("../units-representation");
10
12
  const param_definition_1 = require("../../../mol-util/param-definition");
11
13
  const representation_1 = require("../representation");
@@ -23,11 +25,9 @@ exports.OrientationParams = {
23
25
  function getOrientationParams(ctx, structure) {
24
26
  return exports.OrientationParams;
25
27
  }
26
- exports.getOrientationParams = getOrientationParams;
27
28
  function OrientationRepresentation(ctx, getParams) {
28
29
  return representation_2.Representation.createMulti('Orientation', ctx, getParams, representation_1.StructureRepresentationStateBuilder, OrientationVisuals);
29
30
  }
30
- exports.OrientationRepresentation = OrientationRepresentation;
31
31
  exports.OrientationRepresentationProvider = (0, representation_1.StructureRepresentationProvider)({
32
32
  name: 'orientation',
33
33
  label: 'Orientation',
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.PointRepresentationProvider = exports.PointRepresentation = exports.getPointParams = exports.PointParams = void 0;
8
+ exports.PointRepresentationProvider = exports.PointParams = void 0;
9
+ exports.getPointParams = getPointParams;
10
+ exports.PointRepresentation = PointRepresentation;
9
11
  const element_point_1 = require("../visual/element-point");
10
12
  const units_representation_1 = require("../units-representation");
11
13
  const param_definition_1 = require("../../../mol-util/param-definition");
@@ -20,11 +22,9 @@ exports.PointParams = {
20
22
  function getPointParams(ctx, structure) {
21
23
  return exports.PointParams;
22
24
  }
23
- exports.getPointParams = getPointParams;
24
25
  function PointRepresentation(ctx, getParams) {
25
26
  return representation_2.Representation.createMulti('Point', ctx, getParams, representation_1.StructureRepresentationStateBuilder, PointVisuals);
26
27
  }
27
- exports.PointRepresentation = PointRepresentation;
28
28
  exports.PointRepresentationProvider = (0, representation_1.StructureRepresentationProvider)({
29
29
  name: 'point',
30
30
  label: 'Point',
@@ -19,6 +19,7 @@ export declare const PuttyParams: {
19
19
  flipSided: PD.BooleanParam;
20
20
  flatShaded: PD.BooleanParam;
21
21
  ignoreLight: PD.BooleanParam;
22
+ celShaded: PD.BooleanParam;
22
23
  xrayShaded: PD.Select<boolean | "inverted">;
23
24
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
24
25
  bumpAmplitude: PD.Numeric;
@@ -59,6 +60,7 @@ export declare function getPuttyParams(ctx: ThemeRegistryContext, structure: Str
59
60
  flipSided: PD.BooleanParam;
60
61
  flatShaded: PD.BooleanParam;
61
62
  ignoreLight: PD.BooleanParam;
63
+ celShaded: PD.BooleanParam;
62
64
  xrayShaded: PD.Select<boolean | "inverted">;
63
65
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
64
66
  bumpAmplitude: PD.Numeric;
@@ -100,6 +102,7 @@ export declare const PuttyRepresentationProvider: StructureRepresentationProvide
100
102
  flipSided: PD.BooleanParam;
101
103
  flatShaded: PD.BooleanParam;
102
104
  ignoreLight: PD.BooleanParam;
105
+ celShaded: PD.BooleanParam;
103
106
  xrayShaded: PD.Select<boolean | "inverted">;
104
107
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
105
108
  bumpAmplitude: PD.Numeric;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.PuttyRepresentationProvider = exports.PuttyRepresentation = exports.getPuttyParams = exports.PuttyParams = void 0;
8
+ exports.PuttyRepresentationProvider = exports.PuttyParams = void 0;
9
+ exports.getPuttyParams = getPuttyParams;
10
+ exports.PuttyRepresentation = PuttyRepresentation;
9
11
  const polymer_tube_mesh_1 = require("../visual/polymer-tube-mesh");
10
12
  const polymer_gap_cylinder_1 = require("../visual/polymer-gap-cylinder");
11
13
  const param_definition_1 = require("../../../mol-util/param-definition");
@@ -40,11 +42,9 @@ function getPuttyParams(ctx, structure) {
40
42
  params.visuals.defaultValue.push('polymer-gap');
41
43
  return params;
42
44
  }
43
- exports.getPuttyParams = getPuttyParams;
44
45
  function PuttyRepresentation(ctx, getParams) {
45
46
  return representation_2.Representation.createMulti('Putty', ctx, getParams, representation_1.StructureRepresentationStateBuilder, PuttyVisuals);
46
47
  }
47
- exports.PuttyRepresentation = PuttyRepresentation;
48
48
  exports.PuttyRepresentationProvider = (0, representation_1.StructureRepresentationProvider)({
49
49
  name: 'putty',
50
50
  label: 'Putty',
@@ -22,6 +22,7 @@ export declare const SpacefillParams: {
22
22
  includeParent: PD.BooleanParam;
23
23
  doubleSided: PD.BooleanParam;
24
24
  ignoreLight: PD.BooleanParam;
25
+ celShaded: PD.BooleanParam;
25
26
  xrayShaded: PD.Select<boolean | "inverted">;
26
27
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
27
28
  solidInterior: PD.BooleanParam;
@@ -76,6 +77,7 @@ export declare function getSpacefillParams(ctx: ThemeRegistryContext, structure:
76
77
  includeParent: PD.BooleanParam;
77
78
  doubleSided: PD.BooleanParam;
78
79
  ignoreLight: PD.BooleanParam;
80
+ celShaded: PD.BooleanParam;
79
81
  xrayShaded: PD.Select<boolean | "inverted">;
80
82
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
81
83
  solidInterior: PD.BooleanParam;
@@ -131,6 +133,7 @@ export declare const SpacefillRepresentationProvider: StructureRepresentationPro
131
133
  includeParent: PD.BooleanParam;
132
134
  doubleSided: PD.BooleanParam;
133
135
  ignoreLight: PD.BooleanParam;
136
+ celShaded: PD.BooleanParam;
134
137
  xrayShaded: PD.Select<boolean | "inverted">;
135
138
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
136
139
  solidInterior: PD.BooleanParam;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.SpacefillRepresentationProvider = exports.SpacefillRepresentation = exports.getSpacefillParams = exports.SpacefillParams = void 0;
8
+ exports.SpacefillRepresentationProvider = exports.SpacefillParams = void 0;
9
+ exports.getSpacefillParams = getSpacefillParams;
10
+ exports.SpacefillRepresentation = SpacefillRepresentation;
9
11
  const element_sphere_1 = require("../visual/element-sphere");
10
12
  const units_representation_1 = require("../units-representation");
11
13
  const param_definition_1 = require("../../../mol-util/param-definition");
@@ -32,11 +34,9 @@ function getSpacefillParams(ctx, structure) {
32
34
  }
33
35
  return exports.SpacefillParams;
34
36
  }
35
- exports.getSpacefillParams = getSpacefillParams;
36
37
  function SpacefillRepresentation(ctx, getParams) {
37
38
  return representation_2.Representation.createMulti('Spacefill', ctx, getParams, representation_1.StructureRepresentationStateBuilder, SpacefillVisuals);
38
39
  }
39
- exports.SpacefillRepresentation = SpacefillRepresentation;
40
40
  exports.SpacefillRepresentationProvider = (0, representation_1.StructureRepresentationProvider)({
41
41
  name: 'spacefill',
42
42
  label: 'Spacefill',
@@ -6,7 +6,8 @@
6
6
  * @author David Sehnal <david.sehnal@gmail.com>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.UnitsVisual = exports.UnitsRepresentation = exports.ComplexVisual = exports.ComplexRepresentation = exports.StructureRepresentationProvider = exports.StructureRepresentationStateBuilder = void 0;
9
+ exports.UnitsVisual = exports.UnitsRepresentation = exports.ComplexVisual = exports.ComplexRepresentation = exports.StructureRepresentationStateBuilder = void 0;
10
+ exports.StructureRepresentationProvider = StructureRepresentationProvider;
10
11
  const representation_1 = require("../representation");
11
12
  exports.StructureRepresentationStateBuilder = {
12
13
  create: () => {
@@ -23,7 +24,6 @@ exports.StructureRepresentationStateBuilder = {
23
24
  }
24
25
  };
25
26
  function StructureRepresentationProvider(p) { return p; }
26
- exports.StructureRepresentationProvider = StructureRepresentationProvider;
27
27
  //
28
28
  var complex_representation_1 = require("./complex-representation");
29
29
  Object.defineProperty(exports, "ComplexRepresentation", { enumerable: true, get: function () { return complex_representation_1.ComplexRepresentation; } });
@@ -6,7 +6,7 @@
6
6
  * @author David Sehnal <david.sehnal@gmail.com>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.UnitsRepresentation = void 0;
9
+ exports.UnitsRepresentation = UnitsRepresentation;
10
10
  const param_definition_1 = require("../../mol-util/param-definition");
11
11
  const representation_1 = require("./representation");
12
12
  const representation_2 = require("../representation");
@@ -352,4 +352,3 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
352
352
  destroy
353
353
  };
354
354
  }
355
- exports.UnitsRepresentation = UnitsRepresentation;
@@ -51,6 +51,7 @@ export declare const UnitsMeshParams: {
51
51
  flipSided: PD.BooleanParam;
52
52
  flatShaded: PD.BooleanParam;
53
53
  ignoreLight: PD.BooleanParam;
54
+ celShaded: PD.BooleanParam;
54
55
  xrayShaded: PD.Select<boolean | "inverted">;
55
56
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
56
57
  bumpFrequency: PD.Numeric;
@@ -88,6 +89,7 @@ export declare const UnitsSpheresParams: {
88
89
  sizeFactor: PD.Numeric;
89
90
  doubleSided: PD.BooleanParam;
90
91
  ignoreLight: PD.BooleanParam;
92
+ celShaded: PD.BooleanParam;
91
93
  xrayShaded: PD.Select<boolean | "inverted">;
92
94
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
93
95
  solidInterior: PD.BooleanParam;
@@ -137,6 +139,7 @@ export declare const UnitsCylindersParams: {
137
139
  sizeAspectRatio: PD.Numeric;
138
140
  doubleSided: PD.BooleanParam;
139
141
  ignoreLight: PD.BooleanParam;
142
+ celShaded: PD.BooleanParam;
140
143
  xrayShaded: PD.Select<boolean | "inverted">;
141
144
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
142
145
  solidInterior: PD.BooleanParam;
@@ -288,6 +291,7 @@ export declare const UnitsDirectVolumeParams: {
288
291
  unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
289
292
  includeParent: PD.BooleanParam;
290
293
  ignoreLight: PD.BooleanParam;
294
+ celShaded: PD.BooleanParam;
291
295
  xrayShaded: PD.Select<boolean | "inverted">;
292
296
  controlPoints: PD.LineGraph;
293
297
  stepsPerCell: PD.Numeric;
@@ -326,6 +330,7 @@ export declare const UnitsTextureMeshParams: {
326
330
  flipSided: PD.BooleanParam;
327
331
  flatShaded: PD.BooleanParam;
328
332
  ignoreLight: PD.BooleanParam;
333
+ celShaded: PD.BooleanParam;
329
334
  xrayShaded: PD.Select<boolean | "inverted">;
330
335
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
331
336
  bumpFrequency: PD.Numeric;
@@ -6,7 +6,16 @@
6
6
  * @author Gianluca Tomasello <giagitom@gmail.com>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.UnitsTextureMeshVisual = exports.UnitsTextureMeshParams = exports.UnitsDirectVolumeVisual = exports.UnitsDirectVolumeParams = exports.UnitsTextVisual = exports.UnitsTextParams = exports.UnitsLinesVisual = exports.UnitsLinesParams = exports.UnitsPointsVisual = exports.UnitsPointsParams = exports.UnitsCylindersVisual = exports.UnitsCylindersParams = exports.UnitsSpheresVisual = exports.UnitsSpheresParams = exports.UnitsMeshVisual = exports.UnitsMeshParams = exports.UnitsVisual = void 0;
9
+ exports.UnitsTextureMeshParams = exports.UnitsDirectVolumeParams = exports.UnitsTextParams = exports.UnitsLinesParams = exports.UnitsPointsParams = exports.UnitsCylindersParams = exports.UnitsSpheresParams = exports.UnitsMeshParams = void 0;
10
+ exports.UnitsVisual = UnitsVisual;
11
+ exports.UnitsMeshVisual = UnitsMeshVisual;
12
+ exports.UnitsSpheresVisual = UnitsSpheresVisual;
13
+ exports.UnitsCylindersVisual = UnitsCylindersVisual;
14
+ exports.UnitsPointsVisual = UnitsPointsVisual;
15
+ exports.UnitsLinesVisual = UnitsLinesVisual;
16
+ exports.UnitsTextVisual = UnitsTextVisual;
17
+ exports.UnitsDirectVolumeVisual = UnitsDirectVolumeVisual;
18
+ exports.UnitsTextureMeshVisual = UnitsTextureMeshVisual;
10
19
  const structure_1 = require("../../mol-model/structure");
11
20
  const visual_1 = require("../visual");
12
21
  const geometry_1 = require("../../mol-geo/geometry/geometry");
@@ -364,7 +373,6 @@ function UnitsVisual(builder, materialId) {
364
373
  mustRecreate
365
374
  };
366
375
  }
367
- exports.UnitsVisual = UnitsVisual;
368
376
  // mesh
369
377
  exports.UnitsMeshParams = { ...params_1.StructureMeshParams, ...params_1.StructureParams };
370
378
  function UnitsMeshVisual(builder, materialId) {
@@ -378,7 +386,6 @@ function UnitsMeshVisual(builder, materialId) {
378
386
  geometryUtils: mesh_1.Mesh.Utils
379
387
  }, materialId);
380
388
  }
381
- exports.UnitsMeshVisual = UnitsMeshVisual;
382
389
  // spheres
383
390
  exports.UnitsSpheresParams = { ...params_1.StructureSpheresParams, ...params_1.StructureParams };
384
391
  function UnitsSpheresVisual(builder, materialId) {
@@ -392,7 +399,6 @@ function UnitsSpheresVisual(builder, materialId) {
392
399
  geometryUtils: spheres_1.Spheres.Utils
393
400
  }, materialId);
394
401
  }
395
- exports.UnitsSpheresVisual = UnitsSpheresVisual;
396
402
  // cylinders
397
403
  exports.UnitsCylindersParams = { ...params_1.StructureCylindersParams, ...params_1.StructureParams };
398
404
  function UnitsCylindersVisual(builder, materialId) {
@@ -406,7 +412,6 @@ function UnitsCylindersVisual(builder, materialId) {
406
412
  geometryUtils: cylinders_1.Cylinders.Utils
407
413
  }, materialId);
408
414
  }
409
- exports.UnitsCylindersVisual = UnitsCylindersVisual;
410
415
  // points
411
416
  exports.UnitsPointsParams = { ...params_1.StructurePointsParams, ...params_1.StructureParams };
412
417
  function UnitsPointsVisual(builder, materialId) {
@@ -420,7 +425,6 @@ function UnitsPointsVisual(builder, materialId) {
420
425
  geometryUtils: points_1.Points.Utils
421
426
  }, materialId);
422
427
  }
423
- exports.UnitsPointsVisual = UnitsPointsVisual;
424
428
  // lines
425
429
  exports.UnitsLinesParams = { ...params_1.StructureLinesParams, ...params_1.StructureParams };
426
430
  function UnitsLinesVisual(builder, materialId) {
@@ -434,7 +438,6 @@ function UnitsLinesVisual(builder, materialId) {
434
438
  geometryUtils: lines_1.Lines.Utils
435
439
  }, materialId);
436
440
  }
437
- exports.UnitsLinesVisual = UnitsLinesVisual;
438
441
  // text
439
442
  exports.UnitsTextParams = { ...params_1.StructureTextParams, ...params_1.StructureParams };
440
443
  function UnitsTextVisual(builder, materialId) {
@@ -470,7 +473,6 @@ function UnitsTextVisual(builder, materialId) {
470
473
  geometryUtils: text_1.Text.Utils
471
474
  }, materialId);
472
475
  }
473
- exports.UnitsTextVisual = UnitsTextVisual;
474
476
  // direct-volume
475
477
  exports.UnitsDirectVolumeParams = { ...params_1.StructureDirectVolumeParams, ...params_1.StructureParams };
476
478
  function UnitsDirectVolumeVisual(builder, materialId) {
@@ -484,7 +486,6 @@ function UnitsDirectVolumeVisual(builder, materialId) {
484
486
  geometryUtils: direct_volume_1.DirectVolume.Utils
485
487
  }, materialId);
486
488
  }
487
- exports.UnitsDirectVolumeVisual = UnitsDirectVolumeVisual;
488
489
  // texture-mesh
489
490
  exports.UnitsTextureMeshParams = { ...params_1.StructureTextureMeshParams, ...params_1.StructureParams };
490
491
  function UnitsTextureMeshVisual(builder, materialId) {
@@ -498,4 +499,3 @@ function UnitsTextureMeshVisual(builder, materialId) {
498
499
  geometryUtils: texture_mesh_1.TextureMesh.Utils
499
500
  }, materialId);
500
501
  }
501
- exports.UnitsTextureMeshVisual = UnitsTextureMeshVisual;
@@ -35,6 +35,7 @@ export declare const InterUnitBondCylinderParams: {
35
35
  unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
36
36
  doubleSided: PD.BooleanParam;
37
37
  ignoreLight: PD.BooleanParam;
38
+ celShaded: PD.BooleanParam;
38
39
  xrayShaded: PD.Select<boolean | "inverted">;
39
40
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
40
41
  solidInterior: PD.BooleanParam;
@@ -93,6 +94,7 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
93
94
  unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
94
95
  doubleSided: PD.BooleanParam;
95
96
  ignoreLight: PD.BooleanParam;
97
+ celShaded: PD.BooleanParam;
96
98
  xrayShaded: PD.Select<boolean | "inverted">;
97
99
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
98
100
  solidInterior: PD.BooleanParam;
@@ -6,7 +6,10 @@
6
6
  * @author Gianluca Tomasello <giagitom@gmail.com>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.InterUnitBondCylinderMeshVisual = exports.InterUnitBondCylinderImpostorVisual = exports.InterUnitBondCylinderVisual = exports.InterUnitBondCylinderParams = void 0;
9
+ exports.InterUnitBondCylinderParams = void 0;
10
+ exports.InterUnitBondCylinderVisual = InterUnitBondCylinderVisual;
11
+ exports.InterUnitBondCylinderImpostorVisual = InterUnitBondCylinderImpostorVisual;
12
+ exports.InterUnitBondCylinderMeshVisual = InterUnitBondCylinderMeshVisual;
10
13
  const param_definition_1 = require("../../../mol-util/param-definition");
11
14
  const structure_1 = require("../../../mol-model/structure");
12
15
  const mesh_1 = require("../../../mol-geo/geometry/mesh/mesh");
@@ -185,7 +188,6 @@ function InterUnitBondCylinderVisual(materialId, structure, props, webgl) {
185
188
  ? InterUnitBondCylinderImpostorVisual(materialId)
186
189
  : InterUnitBondCylinderMeshVisual(materialId);
187
190
  }
188
- exports.InterUnitBondCylinderVisual = InterUnitBondCylinderVisual;
189
191
  function InterUnitBondCylinderImpostorVisual(materialId) {
190
192
  return (0, complex_visual_1.ComplexCylindersVisual)({
191
193
  defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.InterUnitBondCylinderParams),
@@ -229,7 +231,6 @@ function InterUnitBondCylinderImpostorVisual(materialId) {
229
231
  }
230
232
  }, materialId);
231
233
  }
232
- exports.InterUnitBondCylinderImpostorVisual = InterUnitBondCylinderImpostorVisual;
233
234
  function InterUnitBondCylinderMeshVisual(materialId) {
234
235
  return (0, complex_visual_1.ComplexMeshVisual)({
235
236
  defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.InterUnitBondCylinderParams),
@@ -269,4 +270,3 @@ function InterUnitBondCylinderMeshVisual(materialId) {
269
270
  }
270
271
  }, materialId);
271
272
  }
272
- exports.InterUnitBondCylinderMeshVisual = InterUnitBondCylinderMeshVisual;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.InterUnitBondLineVisual = exports.InterUnitBondLineParams = void 0;
8
+ exports.InterUnitBondLineParams = void 0;
9
+ exports.InterUnitBondLineVisual = InterUnitBondLineVisual;
9
10
  const param_definition_1 = require("../../../mol-util/param-definition");
10
11
  const structure_1 = require("../../../mol-model/structure");
11
12
  const linear_algebra_1 = require("../../../mol-math/linear-algebra");
@@ -141,4 +142,3 @@ function InterUnitBondLineVisual(materialId) {
141
142
  }
142
143
  }, materialId);
143
144
  }
144
- exports.InterUnitBondLineVisual = InterUnitBondLineVisual;
@@ -36,6 +36,7 @@ export declare const IntraUnitBondCylinderParams: {
36
36
  unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
37
37
  doubleSided: PD.BooleanParam;
38
38
  ignoreLight: PD.BooleanParam;
39
+ celShaded: PD.BooleanParam;
39
40
  xrayShaded: PD.Select<boolean | "inverted">;
40
41
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
41
42
  solidInterior: PD.BooleanParam;
@@ -94,6 +95,7 @@ export declare function IntraUnitBondCylinderVisual(materialId: number, structur
94
95
  unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
95
96
  doubleSided: PD.BooleanParam;
96
97
  ignoreLight: PD.BooleanParam;
98
+ celShaded: PD.BooleanParam;
97
99
  xrayShaded: PD.Select<boolean | "inverted">;
98
100
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
99
101
  solidInterior: PD.BooleanParam;
@@ -7,7 +7,10 @@
7
7
  * @author Gianluca Tomasello <giagitom@gmail.com>
8
8
  */
9
9
  Object.defineProperty(exports, "__esModule", { value: true });
10
- exports.IntraUnitBondCylinderMeshVisual = exports.IntraUnitBondCylinderImpostorVisual = exports.IntraUnitBondCylinderVisual = exports.IntraUnitBondCylinderParams = void 0;
10
+ exports.IntraUnitBondCylinderParams = void 0;
11
+ exports.IntraUnitBondCylinderVisual = IntraUnitBondCylinderVisual;
12
+ exports.IntraUnitBondCylinderImpostorVisual = IntraUnitBondCylinderImpostorVisual;
13
+ exports.IntraUnitBondCylinderMeshVisual = IntraUnitBondCylinderMeshVisual;
11
14
  const param_definition_1 = require("../../../mol-util/param-definition");
12
15
  const structure_1 = require("../../../mol-model/structure");
13
16
  const mesh_1 = require("../../../mol-geo/geometry/mesh/mesh");
@@ -205,7 +208,6 @@ function IntraUnitBondCylinderVisual(materialId, structure, props, webgl) {
205
208
  ? IntraUnitBondCylinderImpostorVisual(materialId)
206
209
  : IntraUnitBondCylinderMeshVisual(materialId);
207
210
  }
208
- exports.IntraUnitBondCylinderVisual = IntraUnitBondCylinderVisual;
209
211
  function IntraUnitBondCylinderImpostorVisual(materialId) {
210
212
  return (0, units_visual_1.UnitsCylindersVisual)({
211
213
  defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.IntraUnitBondCylinderParams),
@@ -254,7 +256,6 @@ function IntraUnitBondCylinderImpostorVisual(materialId) {
254
256
  }
255
257
  }, materialId);
256
258
  }
257
- exports.IntraUnitBondCylinderImpostorVisual = IntraUnitBondCylinderImpostorVisual;
258
259
  function IntraUnitBondCylinderMeshVisual(materialId) {
259
260
  return (0, units_visual_1.UnitsMeshVisual)({
260
261
  defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.IntraUnitBondCylinderParams),
@@ -299,4 +300,3 @@ function IntraUnitBondCylinderMeshVisual(materialId) {
299
300
  }
300
301
  }, materialId);
301
302
  }
302
- exports.IntraUnitBondCylinderMeshVisual = IntraUnitBondCylinderMeshVisual;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.IntraUnitBondLineVisual = exports.IntraUnitBondLineParams = void 0;
8
+ exports.IntraUnitBondLineParams = void 0;
9
+ exports.IntraUnitBondLineVisual = IntraUnitBondLineVisual;
9
10
  const param_definition_1 = require("../../../mol-util/param-definition");
10
11
  const structure_1 = require("../../../mol-model/structure");
11
12
  const linear_algebra_1 = require("../../../mol-math/linear-algebra");
@@ -167,4 +168,3 @@ function IntraUnitBondLineVisual(materialId) {
167
168
  }
168
169
  }, materialId);
169
170
  }
170
- exports.IntraUnitBondLineVisual = IntraUnitBondLineVisual;
@@ -25,6 +25,7 @@ export declare const CarbohydrateLinkParams: {
25
25
  flipSided: PD.BooleanParam;
26
26
  flatShaded: PD.BooleanParam;
27
27
  ignoreLight: PD.BooleanParam;
28
+ celShaded: PD.BooleanParam;
28
29
  xrayShaded: PD.Select<boolean | "inverted">;
29
30
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
30
31
  bumpFrequency: PD.Numeric;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.CarbohydrateLinkVisual = exports.CarbohydrateLinkParams = void 0;
8
+ exports.CarbohydrateLinkParams = void 0;
9
+ exports.CarbohydrateLinkVisual = CarbohydrateLinkVisual;
9
10
  const structure_1 = require("../../../mol-model/structure");
10
11
  const loci_1 = require("../../../mol-model/loci");
11
12
  const linear_algebra_1 = require("../../../mol-math/linear-algebra");
@@ -66,7 +67,6 @@ function CarbohydrateLinkVisual(materialId) {
66
67
  }
67
68
  }, materialId);
68
69
  }
69
- exports.CarbohydrateLinkVisual = CarbohydrateLinkVisual;
70
70
  function CarbohydrateLinkIterator(structure) {
71
71
  const { elements, links } = structure.carbohydrates;
72
72
  const groupCount = links.length;
@@ -14,6 +14,7 @@ export declare const CarbohydrateSymbolParams: {
14
14
  flipSided: PD.BooleanParam;
15
15
  flatShaded: PD.BooleanParam;
16
16
  ignoreLight: PD.BooleanParam;
17
+ celShaded: PD.BooleanParam;
17
18
  xrayShaded: PD.Select<boolean | "inverted">;
18
19
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
19
20
  bumpFrequency: PD.Numeric;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.CarbohydrateSymbolVisual = exports.CarbohydrateSymbolParams = void 0;
8
+ exports.CarbohydrateSymbolParams = void 0;
9
+ exports.CarbohydrateSymbolVisual = CarbohydrateSymbolVisual;
9
10
  const linear_algebra_1 = require("../../../mol-math/linear-algebra");
10
11
  const box_1 = require("../../../mol-geo/primitive/box");
11
12
  const pyramid_1 = require("../../../mol-geo/primitive/pyramid");
@@ -162,7 +163,6 @@ function CarbohydrateSymbolVisual(materialId) {
162
163
  }
163
164
  }, materialId);
164
165
  }
165
- exports.CarbohydrateSymbolVisual = CarbohydrateSymbolVisual;
166
166
  function CarbohydrateElementIterator(structure) {
167
167
  const carbElements = structure.carbohydrates.elements;
168
168
  const groupCount = carbElements.length * 2;
@@ -25,6 +25,7 @@ export declare const CarbohydrateTerminalLinkParams: {
25
25
  flipSided: PD.BooleanParam;
26
26
  flatShaded: PD.BooleanParam;
27
27
  ignoreLight: PD.BooleanParam;
28
+ celShaded: PD.BooleanParam;
28
29
  xrayShaded: PD.Select<boolean | "inverted">;
29
30
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
30
31
  bumpFrequency: PD.Numeric;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.CarbohydrateTerminalLinkVisual = exports.CarbohydrateTerminalLinkParams = void 0;
8
+ exports.CarbohydrateTerminalLinkParams = void 0;
9
+ exports.CarbohydrateTerminalLinkVisual = CarbohydrateTerminalLinkVisual;
9
10
  const param_definition_1 = require("../../../mol-util/param-definition");
10
11
  const structure_1 = require("../../../mol-model/structure");
11
12
  const linear_algebra_1 = require("../../../mol-math/linear-algebra");
@@ -85,7 +86,6 @@ function CarbohydrateTerminalLinkVisual(materialId) {
85
86
  }
86
87
  }, materialId);
87
88
  }
88
- exports.CarbohydrateTerminalLinkVisual = CarbohydrateTerminalLinkVisual;
89
89
  function CarbohydrateTerminalLinkIterator(structure) {
90
90
  const { elements, terminalLinks } = structure.carbohydrates;
91
91
  const groupCount = terminalLinks.length;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.ElementCrossVisual = exports.createElementCross = exports.ElementCrossParams = void 0;
8
+ exports.ElementCrossParams = void 0;
9
+ exports.createElementCross = createElementCross;
10
+ exports.ElementCrossVisual = ElementCrossVisual;
9
11
  const param_definition_1 = require("../../../mol-util/param-definition");
10
12
  const units_visual_1 = require("../units-visual");
11
13
  const structure_1 = require("../../../mol-model/structure");
@@ -64,7 +66,6 @@ function createElementCross(ctx, unit, structure, theme, props, lines) {
64
66
  l.setBoundingSphere(sphere);
65
67
  return l;
66
68
  }
67
- exports.createElementCross = createElementCross;
68
69
  function ElementCrossVisual(materialId) {
69
70
  return (0, units_visual_1.UnitsLinesVisual)({
70
71
  defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.ElementCrossParams),
@@ -81,4 +82,3 @@ function ElementCrossVisual(materialId) {
81
82
  }
82
83
  }, materialId);
83
84
  }
84
- exports.ElementCrossVisual = ElementCrossVisual;