molstar 4.3.0 → 4.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1384) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  8. package/lib/apps/docking-viewer/index.html +36 -36
  9. package/lib/apps/docking-viewer/viewport.d.ts +1 -1
  10. package/lib/apps/docking-viewer/viewport.js +2 -1
  11. package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
  12. package/lib/apps/mesoscale-explorer/app.js +12 -1
  13. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  14. package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
  15. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  16. package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
  17. package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  18. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
  19. package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  20. package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
  21. package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
  22. package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  23. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
  24. package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  25. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
  26. package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
  27. package/lib/apps/mesoscale-explorer/data/state.js +83 -8
  28. package/lib/apps/mesoscale-explorer/index.html +106 -101
  29. package/lib/apps/mesoscale-explorer/style.scss +66 -33
  30. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  31. package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
  32. package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  33. package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
  34. package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  35. package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
  36. package/lib/apps/viewer/app.d.ts +10 -4
  37. package/lib/apps/viewer/app.js +28 -0
  38. package/lib/apps/viewer/embedded.html +52 -52
  39. package/lib/apps/viewer/index.html +129 -129
  40. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  41. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  42. package/lib/cli/cifschema/util/generate.js +12 -12
  43. package/lib/cli/lipid-params/index.js +9 -9
  44. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
  45. package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
  46. package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
  48. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  49. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
  50. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  51. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
  52. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  53. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
  54. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  55. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
  56. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
  57. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  58. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
  59. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  60. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
  61. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
  62. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
  63. package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
  64. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  65. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
  66. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  67. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
  68. package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  69. package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
  70. package/lib/commonjs/apps/viewer/app.d.ts +10 -4
  71. package/lib/commonjs/apps/viewer/app.js +28 -0
  72. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  73. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  74. package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
  75. package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
  76. package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
  77. package/lib/commonjs/cli/cifschema/util/generate.js +13 -14
  78. package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
  79. package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
  80. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  81. package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
  82. package/lib/commonjs/cli/structure-info/helpers.js +2 -3
  83. package/lib/commonjs/cli/structure-info/model.js +11 -12
  84. package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
  85. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  86. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
  87. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  88. package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
  89. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  90. package/lib/commonjs/examples/lighting/index.js +2 -1
  91. package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
  92. package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
  93. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
  94. package/lib/commonjs/examples/task.js +6 -6
  95. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
  96. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
  97. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
  98. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
  99. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  100. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
  101. package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
  102. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
  103. package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
  104. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  105. package/lib/commonjs/extensions/anvil/behavior.js +2 -2
  106. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  107. package/lib/commonjs/extensions/anvil/representation.js +3 -3
  108. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
  109. package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
  110. package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
  111. package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
  112. package/lib/commonjs/extensions/assembly-symmetry/prop.js +27 -27
  113. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  114. package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
  115. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  116. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
  117. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  118. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
  119. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +7 -7
  120. package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
  121. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  122. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
  123. package/lib/commonjs/extensions/g3d/data.js +2 -3
  124. package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
  125. package/lib/commonjs/extensions/g3d/model.js +5 -5
  126. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
  127. package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
  128. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  129. package/lib/commonjs/extensions/meshes/examples.js +9 -9
  130. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -6
  131. package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
  132. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
  133. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
  134. package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
  135. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
  136. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
  137. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
  138. package/lib/commonjs/extensions/model-export/export.js +2 -2
  139. package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
  140. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
  141. package/lib/commonjs/extensions/mp4-export/encoder.js +1 -2
  142. package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
  143. package/lib/commonjs/extensions/mvs/camera.js +4 -5
  144. package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
  145. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -32
  146. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
  147. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
  148. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
  149. package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
  150. package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
  151. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
  152. package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
  153. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
  154. package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
  155. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
  156. package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
  157. package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
  158. package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
  159. package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
  160. package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
  161. package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
  162. package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
  163. package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
  164. package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
  165. package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
  166. package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
  167. package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
  168. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  169. package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
  170. package/lib/commonjs/extensions/mvs/load.js +1 -2
  171. package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
  172. package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
  173. package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
  174. package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
  175. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -8
  176. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
  177. package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
  178. package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
  179. package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
  180. package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
  181. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  182. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
  183. package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
  184. package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
  185. package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
  186. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +2 -3
  187. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +2 -2
  188. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +6 -6
  189. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +3 -3
  190. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +2 -2
  191. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
  192. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
  193. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
  194. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
  195. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
  196. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
  197. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
  198. package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
  199. package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
  200. package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
  201. package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
  202. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +9 -1
  203. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
  204. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  205. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  206. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  207. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  208. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -0
  209. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
  210. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
  211. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  212. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +7 -2
  213. package/lib/commonjs/mol-canvas3d/util.js +3 -4
  214. package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
  215. package/lib/commonjs/mol-data/db/column.d.ts +1 -1
  216. package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
  217. package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
  218. package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
  219. package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
  220. package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
  221. package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
  222. package/lib/commonjs/mol-data/int/linked-index.js +1 -2
  223. package/lib/commonjs/mol-data/util/array.js +5 -6
  224. package/lib/commonjs/mol-data/util/buckets.js +1 -2
  225. package/lib/commonjs/mol-data/util/combination.js +2 -2
  226. package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
  227. package/lib/commonjs/mol-data/util/grouping.js +2 -3
  228. package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
  229. package/lib/commonjs/mol-data/util/sort.js +5 -6
  230. package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
  231. package/lib/commonjs/mol-geo/geometry/base.js +3 -3
  232. package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
  233. package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
  234. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
  235. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
  236. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
  237. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
  238. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
  239. package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
  240. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
  241. package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
  242. package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
  243. package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
  244. package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
  245. package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
  246. package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
  247. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
  248. package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
  249. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
  250. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
  251. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
  252. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
  253. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
  254. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  255. package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
  256. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  257. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
  258. package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
  259. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
  260. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
  261. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
  262. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
  263. package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
  264. package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
  265. package/lib/commonjs/mol-geo/primitive/box.js +3 -4
  266. package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
  267. package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
  268. package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
  269. package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
  270. package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
  271. package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
  272. package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
  273. package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
  274. package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
  275. package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
  276. package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
  277. package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
  278. package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
  279. package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
  280. package/lib/commonjs/mol-geo/primitive/star.js +2 -2
  281. package/lib/commonjs/mol-geo/primitive/tetrahedron.js +3 -3
  282. package/lib/commonjs/mol-geo/primitive/torus.js +2 -2
  283. package/lib/commonjs/mol-geo/primitive/wedge.js +3 -4
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  1383. package/lib/servers/volume/config.js +5 -5
  1384. package/package.json +197 -196
@@ -5,7 +5,10 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.transformPrimitive = exports.PrimitiveBuilder = exports.copyPrimitive = exports.createPrimitive = void 0;
8
+ exports.createPrimitive = createPrimitive;
9
+ exports.copyPrimitive = copyPrimitive;
10
+ exports.PrimitiveBuilder = PrimitiveBuilder;
11
+ exports.transformPrimitive = transformPrimitive;
9
12
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
13
  const a = (0, linear_algebra_1.Vec3)(), b = (0, linear_algebra_1.Vec3)(), c = (0, linear_algebra_1.Vec3)();
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14
  /** Create primitive with face normals from vertices and indices */
@@ -20,7 +23,6 @@ function createPrimitive(vertices, indices) {
20
23
  }
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  return builder.getPrimitive();
22
25
  }
23
- exports.createPrimitive = createPrimitive;
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  function copyPrimitive(primitive) {
25
27
  return {
26
28
  vertices: new Float32Array(primitive.vertices),
@@ -28,7 +30,6 @@ function copyPrimitive(primitive) {
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  indices: new Uint32Array(primitive.indices)
29
31
  };
30
32
  }
31
- exports.copyPrimitive = copyPrimitive;
32
33
  const vn = (0, linear_algebra_1.Vec3)();
33
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  /** Builder to create primitive with face normals */
34
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  function PrimitiveBuilder(triangleCount, vertexCount) {
@@ -76,7 +77,6 @@ function PrimitiveBuilder(triangleCount, vertexCount) {
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  getPrimitive: () => ({ vertices, normals, indices })
77
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  };
78
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  }
79
- exports.PrimitiveBuilder = PrimitiveBuilder;
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80
  const tmpV = (0, linear_algebra_1.Vec3)();
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  const tmpMat3 = (0, linear_algebra_1.Mat3)();
82
82
  /** Transform primitive in-place */
@@ -93,4 +93,3 @@ function transformPrimitive(primitive, t) {
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  }
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  return primitive;
95
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  }
96
- exports.transformPrimitive = transformPrimitive;
@@ -5,7 +5,17 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.HexagonalPrismCage = exports.PentagonalPrismCage = exports.DiamondPrismCage = exports.PrismCage = exports.HeptagonalPrism = exports.ShiftedHexagonalPrism = exports.HexagonalPrism = exports.PentagonalPrism = exports.DiamondPrism = exports.Prism = exports.DefaultPrismProps = void 0;
8
+ exports.DefaultPrismProps = void 0;
9
+ exports.Prism = Prism;
10
+ exports.DiamondPrism = DiamondPrism;
11
+ exports.PentagonalPrism = PentagonalPrism;
12
+ exports.HexagonalPrism = HexagonalPrism;
13
+ exports.ShiftedHexagonalPrism = ShiftedHexagonalPrism;
14
+ exports.HeptagonalPrism = HeptagonalPrism;
15
+ exports.PrismCage = PrismCage;
16
+ exports.DiamondPrismCage = DiamondPrismCage;
17
+ exports.PentagonalPrismCage = PentagonalPrismCage;
18
+ exports.HexagonalPrismCage = HexagonalPrismCage;
9
19
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
20
  const primitive_1 = require("./primitive");
11
21
  const polygon_1 = require("./polygon");
@@ -100,42 +110,36 @@ function Prism(points, props) {
100
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  }
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111
  return builder.getPrimitive();
102
112
  }
103
- exports.Prism = Prism;
104
113
  let diamond;
105
114
  function DiamondPrism() {
106
115
  if (!diamond)
107
116
  diamond = Prism((0, polygon_1.polygon)(4, false));
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117
  return diamond;
109
118
  }
110
- exports.DiamondPrism = DiamondPrism;
111
119
  let pentagonalPrism;
112
120
  function PentagonalPrism() {
113
121
  if (!pentagonalPrism)
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  pentagonalPrism = Prism((0, polygon_1.polygon)(5, false));
115
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  return pentagonalPrism;
116
124
  }
117
- exports.PentagonalPrism = PentagonalPrism;
118
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  let hexagonalPrism;
119
126
  function HexagonalPrism() {
120
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  if (!hexagonalPrism)
121
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  hexagonalPrism = Prism((0, polygon_1.polygon)(6, false));
122
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  return hexagonalPrism;
123
130
  }
124
- exports.HexagonalPrism = HexagonalPrism;
125
131
  let shiftedHexagonalPrism;
126
132
  function ShiftedHexagonalPrism() {
127
133
  if (!shiftedHexagonalPrism)
128
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  shiftedHexagonalPrism = Prism((0, polygon_1.polygon)(6, true));
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  return shiftedHexagonalPrism;
130
136
  }
131
- exports.ShiftedHexagonalPrism = ShiftedHexagonalPrism;
132
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  let heptagonalPrism;
133
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  function HeptagonalPrism() {
134
139
  if (!heptagonalPrism)
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  heptagonalPrism = Prism((0, polygon_1.polygon)(7, false));
136
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  return heptagonalPrism;
137
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  }
138
- exports.HeptagonalPrism = HeptagonalPrism;
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  //
140
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  /**
141
145
  * Create a prism cage
@@ -159,25 +163,21 @@ function PrismCage(points, height = 1) {
159
163
  }
160
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  return { vertices, edges };
161
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  }
162
- exports.PrismCage = PrismCage;
163
166
  let diamondCage;
164
167
  function DiamondPrismCage() {
165
168
  if (!diamondCage)
166
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  diamondCage = PrismCage((0, polygon_1.polygon)(4, false));
167
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  return diamondCage;
168
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  }
169
- exports.DiamondPrismCage = DiamondPrismCage;
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  let pentagonalPrismCage;
171
173
  function PentagonalPrismCage() {
172
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  if (!pentagonalPrismCage)
173
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  pentagonalPrismCage = PrismCage((0, polygon_1.polygon)(5, false));
174
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  return pentagonalPrismCage;
175
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  }
176
- exports.PentagonalPrismCage = PentagonalPrismCage;
177
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  let hexagonalPrismCage;
178
179
  function HexagonalPrismCage() {
179
180
  if (!hexagonalPrismCage)
180
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  hexagonalPrismCage = PrismCage((0, polygon_1.polygon)(6, false));
181
182
  return hexagonalPrismCage;
182
183
  }
183
- exports.HexagonalPrismCage = HexagonalPrismCage;
@@ -5,7 +5,12 @@
5
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  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.OctagonalPyramidCage = exports.PyramidCage = exports.PerforatedOctagonalPyramid = exports.OctagonalPyramid = exports.TriangularPyramid = exports.Pyramid = void 0;
8
+ exports.Pyramid = Pyramid;
9
+ exports.TriangularPyramid = TriangularPyramid;
10
+ exports.OctagonalPyramid = OctagonalPyramid;
11
+ exports.PerforatedOctagonalPyramid = PerforatedOctagonalPyramid;
12
+ exports.PyramidCage = PyramidCage;
13
+ exports.OctagonalPyramidCage = OctagonalPyramidCage;
9
14
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
15
  const primitive_1 = require("./primitive");
11
16
  const polygon_1 = require("./polygon");
@@ -51,21 +56,18 @@ function Pyramid(points) {
51
56
  }
52
57
  return builder.getPrimitive();
53
58
  }
54
- exports.Pyramid = Pyramid;
55
59
  let triangularPyramid;
56
60
  function TriangularPyramid() {
57
61
  if (!triangularPyramid)
58
62
  triangularPyramid = Pyramid((0, polygon_1.polygon)(3, true));
59
63
  return triangularPyramid;
60
64
  }
61
- exports.TriangularPyramid = TriangularPyramid;
62
65
  let octagonalPyramid;
63
66
  function OctagonalPyramid() {
64
67
  if (!octagonalPyramid)
65
68
  octagonalPyramid = Pyramid((0, polygon_1.polygon)(8, true));
66
69
  return octagonalPyramid;
67
70
  }
68
- exports.OctagonalPyramid = OctagonalPyramid;
69
71
  let perforatedOctagonalPyramid;
70
72
  function PerforatedOctagonalPyramid() {
71
73
  if (!perforatedOctagonalPyramid) {
@@ -90,7 +92,6 @@ function PerforatedOctagonalPyramid() {
90
92
  }
91
93
  return perforatedOctagonalPyramid;
92
94
  }
93
- exports.PerforatedOctagonalPyramid = PerforatedOctagonalPyramid;
94
95
  //
95
96
  /**
96
97
  * Create a prism cage
@@ -115,11 +116,9 @@ function PyramidCage(points) {
115
116
  }
116
117
  return { vertices, edges };
117
118
  }
118
- exports.PyramidCage = PyramidCage;
119
119
  let octagonalPyramidCage;
120
120
  function OctagonalPyramidCage() {
121
121
  if (!octagonalPyramidCage)
122
122
  octagonalPyramidCage = PyramidCage((0, polygon_1.polygon)(8, true));
123
123
  return octagonalPyramidCage;
124
124
  }
125
- exports.OctagonalPyramidCage = OctagonalPyramidCage;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Sphere = exports.sphereVertexCount = void 0;
8
+ exports.sphereVertexCount = sphereVertexCount;
9
+ exports.Sphere = Sphere;
9
10
  const polyhedron_1 = require("./polyhedron");
10
11
  const icosahedron_1 = require("./icosahedron");
11
12
  const { vertices, indices } = (0, icosahedron_1.Icosahedron)();
@@ -13,9 +14,7 @@ const { vertices, indices } = (0, icosahedron_1.Icosahedron)();
13
14
  function sphereVertexCount(detail) {
14
15
  return 10 * Math.pow(Math.pow(2, detail), 2) + 2;
15
16
  }
16
- exports.sphereVertexCount = sphereVertexCount;
17
17
  /** Create sphere by subdividing an icosahedron */
18
18
  function Sphere(detail) {
19
19
  return (0, polyhedron_1.Polyhedron)(vertices, indices, { detail, radius: 1 });
20
20
  }
21
- exports.Sphere = Sphere;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.SpikedBall = void 0;
8
+ exports.SpikedBall = SpikedBall;
9
9
  const primitive_1 = require("./primitive");
10
10
  const dodecahedron_1 = require("./dodecahedron");
11
11
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
@@ -52,4 +52,3 @@ function SpikedBall(radiusRatio = 1) {
52
52
  }
53
53
  return (0, primitive_1.createPrimitive)(vertices, indices);
54
54
  }
55
- exports.SpikedBall = SpikedBall;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Star = exports.DefaultStarProps = void 0;
8
+ exports.DefaultStarProps = void 0;
9
+ exports.Star = Star;
9
10
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
11
  const primitive_1 = require("./primitive");
11
12
  exports.DefaultStarProps = {
@@ -44,4 +45,3 @@ function Star(props) {
44
45
  }
45
46
  return builder.getPrimitive();
46
47
  }
47
- exports.Star = Star;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.TetrahedronCage = exports.Tetrahedron = exports.tetrahedronIndices = exports.tetrahedronVertices = void 0;
8
+ exports.tetrahedronIndices = exports.tetrahedronVertices = void 0;
9
+ exports.Tetrahedron = Tetrahedron;
10
+ exports.TetrahedronCage = TetrahedronCage;
9
11
  const primitive_1 = require("./primitive");
10
12
  const cage_1 = require("./cage");
11
13
  exports.tetrahedronVertices = [
@@ -24,9 +26,7 @@ function Tetrahedron() {
24
26
  tetrahedron = (0, primitive_1.createPrimitive)(exports.tetrahedronVertices, exports.tetrahedronIndices);
25
27
  return tetrahedron;
26
28
  }
27
- exports.Tetrahedron = Tetrahedron;
28
29
  const tetrahedronCage = (0, cage_1.createCage)(exports.tetrahedronVertices, tetrahedronEdges);
29
30
  function TetrahedronCage() {
30
31
  return tetrahedronCage;
31
32
  }
32
- exports.TetrahedronCage = TetrahedronCage;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Torus = exports.DefaultTorusProps = void 0;
8
+ exports.DefaultTorusProps = void 0;
9
+ exports.Torus = Torus;
9
10
  // adapted from three.js, MIT License Copyright 2010-2021 three.js authors
10
11
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
11
12
  exports.DefaultTorusProps = {
@@ -59,4 +60,3 @@ function Torus(props) {
59
60
  indices: new Uint32Array(indices)
60
61
  };
61
62
  }
62
- exports.Torus = Torus;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.WedgeCage = exports.Wedge = exports.createWedge = void 0;
8
+ exports.createWedge = createWedge;
9
+ exports.Wedge = Wedge;
10
+ exports.WedgeCage = WedgeCage;
9
11
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
12
  const primitive_1 = require("./primitive");
11
13
  const polygon_1 = require("./polygon");
@@ -38,18 +40,15 @@ function createWedge() {
38
40
  builder.add(a, b, c);
39
41
  return builder.getPrimitive();
40
42
  }
41
- exports.createWedge = createWedge;
42
43
  let wedge;
43
44
  function Wedge() {
44
45
  if (!wedge)
45
46
  wedge = createWedge();
46
47
  return wedge;
47
48
  }
48
- exports.Wedge = Wedge;
49
49
  let wedgeCage;
50
50
  function WedgeCage() {
51
51
  if (!wedgeCage)
52
52
  wedgeCage = (0, prism_1.PrismCage)(points);
53
53
  return wedgeCage;
54
54
  }
55
- exports.WedgeCage = WedgeCage;
@@ -7,7 +7,9 @@
7
7
  * @author Cai Huiyu <szmun.caihy@gmail.com>
8
8
  */
9
9
  Object.defineProperty(exports, "__esModule", { value: true });
10
- exports.isPositionLocation = exports.PositionLocation = exports.LocationIterator = void 0;
10
+ exports.LocationIterator = LocationIterator;
11
+ exports.PositionLocation = PositionLocation;
12
+ exports.isPositionLocation = isPositionLocation;
11
13
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
12
14
  const location_1 = require("../../mol-model/location");
13
15
  function LocationIterator(groupCount, instanceCount, stride, getLocation, nonInstanceable = false, isSecondary = () => false, getLocation2) {
@@ -85,7 +87,6 @@ function LocationIterator(groupCount, instanceCount, stride, getLocation, nonIns
85
87
  }
86
88
  };
87
89
  }
88
- exports.LocationIterator = LocationIterator;
89
90
  function PositionLocation(position, normal) {
90
91
  return {
91
92
  kind: 'position-location',
@@ -93,8 +94,6 @@ function PositionLocation(position, normal) {
93
94
  normal: normal ? linear_algebra_1.Vec3.clone(normal) : (0, linear_algebra_1.Vec3)()
94
95
  };
95
96
  }
96
- exports.PositionLocation = PositionLocation;
97
97
  function isPositionLocation(x) {
98
98
  return !!x && x.kind === 'position-location';
99
99
  }
100
- exports.isPositionLocation = isPositionLocation;
@@ -6,7 +6,8 @@
6
6
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.computeMarchingCubesLines = exports.computeMarchingCubesMesh = void 0;
9
+ exports.computeMarchingCubesMesh = computeMarchingCubesMesh;
10
+ exports.computeMarchingCubesLines = computeMarchingCubesLines;
10
11
  const mol_task_1 = require("../../../mol-task");
11
12
  const tables_1 = require("./tables");
12
13
  const mol_util_1 = require("../../../mol-util");
@@ -36,7 +37,6 @@ function computeMarchingCubesMesh(params, mesh) {
36
37
  return builder.get();
37
38
  });
38
39
  }
39
- exports.computeMarchingCubesMesh = computeMarchingCubesMesh;
40
40
  function computeMarchingCubesLines(params, lines) {
41
41
  return mol_task_1.Task.create('Marching Cubes Lines', async (ctx) => {
42
42
  const inputParams = getInputParams(params);
@@ -48,7 +48,6 @@ function computeMarchingCubesLines(params, lines) {
48
48
  return builder.get();
49
49
  });
50
50
  }
51
- exports.computeMarchingCubesLines = computeMarchingCubesLines;
52
51
  class MarchingCubesComputation {
53
52
  async doSlices() {
54
53
  let done = 0;
@@ -7,7 +7,8 @@
7
7
  * @author Fred Ludlow <fred.ludlow@gmail.com>
8
8
  */
9
9
  Object.defineProperty(exports, "__esModule", { value: true });
10
- exports.MarchinCubesLinesBuilder = exports.MarchinCubesMeshBuilder = void 0;
10
+ exports.MarchinCubesMeshBuilder = MarchinCubesMeshBuilder;
11
+ exports.MarchinCubesLinesBuilder = MarchinCubesLinesBuilder;
11
12
  const util_1 = require("../../../mol-data/util");
12
13
  const mol_util_1 = require("../../../mol-util");
13
14
  const mesh_1 = require("../../geometry/mesh/mesh");
@@ -50,7 +51,6 @@ function MarchinCubesMeshBuilder(vertexChunkSize, mesh) {
50
51
  }
51
52
  };
52
53
  }
53
- exports.MarchinCubesMeshBuilder = MarchinCubesMeshBuilder;
54
54
  function MarchinCubesLinesBuilder(vertexChunkSize, lines) {
55
55
  const vertices = util_1.ChunkedArray.create(Float32Array, 3, vertexChunkSize);
56
56
  const groups = util_1.ChunkedArray.create(Float32Array, 1, vertexChunkSize);
@@ -96,4 +96,3 @@ function MarchinCubesLinesBuilder(vertexChunkSize, lines) {
96
96
  }
97
97
  };
98
98
  }
99
- exports.MarchinCubesLinesBuilder = MarchinCubesLinesBuilder;
@@ -6,11 +6,11 @@
6
6
  * @author Fred Ludlow <fred.ludlow@gmail.com>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.AllowedContours = exports.TriTable = exports.EdgeTable = exports.EdgeIdInfo = exports.CubeEdges = exports.CubeVertices = exports.EdgesYZ = exports.EdgesXZ = exports.EdgesXY = exports.IndexPair = exports.Index = void 0;
10
- function Index(i, j, k) { return { i, j, k }; }
9
+ exports.AllowedContours = exports.TriTable = exports.EdgeTable = exports.EdgeIdInfo = exports.CubeEdges = exports.CubeVertices = exports.EdgesYZ = exports.EdgesXZ = exports.EdgesXY = void 0;
11
10
  exports.Index = Index;
12
- function IndexPair(a, b) { return { a, b }; }
13
11
  exports.IndexPair = IndexPair;
12
+ function Index(i, j, k) { return { i, j, k }; }
13
+ function IndexPair(a, b) { return { a, b }; }
14
14
  exports.EdgesXY = [
15
15
  [],
16
16
  [0, 3],
@@ -5,7 +5,13 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.createGroupMapping = exports.computeVertexNormals = exports.computeIndexedVertexNormals = exports.appplyRadius = exports.transformDirectionArray = exports.transformPositionArray = exports.normalizeVec3Array = void 0;
8
+ exports.normalizeVec3Array = normalizeVec3Array;
9
+ exports.transformPositionArray = transformPositionArray;
10
+ exports.transformDirectionArray = transformDirectionArray;
11
+ exports.appplyRadius = appplyRadius;
12
+ exports.computeIndexedVertexNormals = computeIndexedVertexNormals;
13
+ exports.computeVertexNormals = computeVertexNormals;
14
+ exports.createGroupMapping = createGroupMapping;
9
15
  const linear_algebra_1 = require("../mol-math/linear-algebra");
10
16
  const array_1 = require("../mol-util/array");
11
17
  function normalizeVec3Array(a, count) {
@@ -20,7 +26,6 @@ function normalizeVec3Array(a, count) {
20
26
  }
21
27
  return a;
22
28
  }
23
- exports.normalizeVec3Array = normalizeVec3Array;
24
29
  const tmpV3 = (0, linear_algebra_1.Vec3)();
25
30
  function transformPositionArray(t, array, offset, count) {
26
31
  for (let i = 0, il = count * 3; i < il; i += 3) {
@@ -29,7 +34,6 @@ function transformPositionArray(t, array, offset, count) {
29
34
  linear_algebra_1.Vec3.toArray(tmpV3, array, offset + i);
30
35
  }
31
36
  }
32
- exports.transformPositionArray = transformPositionArray;
33
37
  function transformDirectionArray(n, array, offset, count) {
34
38
  for (let i = 0, il = count * 3; i < il; i += 3) {
35
39
  linear_algebra_1.Vec3.fromArray(tmpV3, array, offset + i);
@@ -37,7 +41,6 @@ function transformDirectionArray(n, array, offset, count) {
37
41
  linear_algebra_1.Vec3.toArray(tmpV3, array, offset + i);
38
42
  }
39
43
  }
40
- exports.transformDirectionArray = transformDirectionArray;
41
44
  /** iterate over the entire array and apply the radius to each vertex */
42
45
  function appplyRadius(vertices, radius) {
43
46
  for (let i = 0, il = vertices.length; i < il; i += 3) {
@@ -47,7 +50,6 @@ function appplyRadius(vertices, radius) {
47
50
  linear_algebra_1.Vec3.toArray(tmpV3, vertices, i);
48
51
  }
49
52
  }
50
- exports.appplyRadius = appplyRadius;
51
53
  const a = (0, linear_algebra_1.Vec3)();
52
54
  const b = (0, linear_algebra_1.Vec3)();
53
55
  const c = (0, linear_algebra_1.Vec3)();
@@ -81,7 +83,6 @@ function computeIndexedVertexNormals(vertices, indices, normals, vertexCount, tr
81
83
  }
82
84
  return normalizeVec3Array(normals, vertexCount);
83
85
  }
84
- exports.computeIndexedVertexNormals = computeIndexedVertexNormals;
85
86
  /**
86
87
  * vertex normals for unindexed triangle soup
87
88
  * - normals array must contain only zeros
@@ -106,7 +107,6 @@ function computeVertexNormals(vertices, normals, vertexCount) {
106
107
  }
107
108
  return normalizeVec3Array(normals, vertexCount);
108
109
  }
109
- exports.computeVertexNormals = computeVertexNormals;
110
110
  /**
111
111
  * The `step` parameter allows to skip over repeated values in `groups`
112
112
  */
@@ -132,4 +132,3 @@ function createGroupMapping(groups, dataCount, step = 1) {
132
132
  }
133
133
  return { indices, offsets };
134
134
  }
135
- exports.createGroupMapping = createGroupMapping;
@@ -5,7 +5,8 @@
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.createGrid3dComputeRenderable = exports.canComputeGrid3dOnGPU = void 0;
8
+ exports.canComputeGrid3dOnGPU = canComputeGrid3dOnGPU;
9
+ exports.createGrid3dComputeRenderable = createGrid3dComputeRenderable;
9
10
  const schema_1 = require("../renderable/schema");
10
11
  const common_1 = require("../../mol-math/geometry/common");
11
12
  const grid3d_template_frag_1 = require("../shader/util/grid3d-template.frag");
@@ -22,7 +23,6 @@ const debug_1 = require("../../mol-util/debug");
22
23
  function canComputeGrid3dOnGPU(webgl) {
23
24
  return !!(webgl === null || webgl === void 0 ? void 0 : webgl.extensions.textureFloat);
24
25
  }
25
- exports.canComputeGrid3dOnGPU = canComputeGrid3dOnGPU;
26
26
  const FrameBufferName = 'grid3d-computable';
27
27
  const Texture0Name = 'grid3d-computable-0';
28
28
  const Texture1Name = 'grid3d-computable-1';
@@ -196,7 +196,6 @@ function createGrid3dComputeRenderable(spec) {
196
196
  return new Float32Array(array.buffer, array.byteOffset, nx * ny * nz);
197
197
  };
198
198
  }
199
- exports.createGrid3dComputeRenderable = createGrid3dComputeRenderable;
200
199
  function resetGl(webgl, w) {
201
200
  const { gl, state } = webgl;
202
201
  state.viewport(0, 0, w, w);
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.createHiZRenderable = void 0;
8
+ exports.createHiZRenderable = createHiZRenderable;
9
9
  const vec2_1 = require("../../mol-math/linear-algebra/3d/vec2");
10
10
  const value_cell_1 = require("../../mol-util/value-cell");
11
11
  const renderable_1 = require("../renderable");
@@ -33,4 +33,3 @@ function createHiZRenderable(ctx, previousLevel) {
33
33
  const renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', HiZShaderCode, schema, values);
34
34
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
35
35
  }
36
- exports.createHiZRenderable = createHiZRenderable;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.createHistogramPyramid = void 0;
8
+ exports.createHistogramPyramid = createHistogramPyramid;
9
9
  const renderable_1 = require("../../renderable");
10
10
  const render_item_1 = require("../../webgl/render-item");
11
11
  const schema_1 = require("../../renderable/schema");
@@ -171,4 +171,3 @@ function createHistogramPyramid(ctx, inputTexture, scale, gridTexDim) {
171
171
  // console.log({ height, count, scale });
172
172
  return { pyramidTex, count, height, levels, scale };
173
173
  }
174
- exports.createHistogramPyramid = createHistogramPyramid;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.getHistopyramidSum = void 0;
8
+ exports.getHistopyramidSum = getHistopyramidSum;
9
9
  const renderable_1 = require("../../renderable");
10
10
  const render_item_1 = require("../../webgl/render-item");
11
11
  const schema_1 = require("../../renderable/schema");
@@ -85,4 +85,3 @@ function getHistopyramidSum(ctx, pyramidTopTexture) {
85
85
  ? sumInts[0]
86
86
  : (0, number_packing_1.unpackRGBToInt)(sumBytes[0], sumBytes[1], sumBytes[2]);
87
87
  }
88
- exports.getHistopyramidSum = getHistopyramidSum;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.calcActiveVoxels = void 0;
8
+ exports.calcActiveVoxels = calcActiveVoxels;
9
9
  const renderable_1 = require("../../renderable");
10
10
  const render_item_1 = require("../../webgl/render-item");
11
11
  const schema_1 = require("../../renderable/schema");
@@ -102,4 +102,3 @@ function calcActiveVoxels(ctx, volumeData, gridDim, gridTexDim, isoValue, gridSc
102
102
  ctx.timer.markEnd('calcActiveVoxels');
103
103
  return activeVoxelsTex;
104
104
  }
105
- exports.calcActiveVoxels = calcActiveVoxels;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.extractIsosurface = exports.createIsosurfaceBuffers = void 0;
8
+ exports.createIsosurfaceBuffers = createIsosurfaceBuffers;
9
+ exports.extractIsosurface = extractIsosurface;
9
10
  const renderable_1 = require("../../renderable");
10
11
  const render_item_1 = require("../../webgl/render-item");
11
12
  const schema_1 = require("../../renderable/schema");
@@ -168,7 +169,6 @@ function createIsosurfaceBuffers(ctx, activeVoxelsBase, volumeData, histogramPyr
168
169
  // printTextureImage(readTexture(ctx, normalTexture, new Float32Array(width * height * 4)), { scale: 0.75, normalize: true });
169
170
  return { vertexTexture, groupTexture, normalTexture, vertexCount: count };
170
171
  }
171
- exports.createIsosurfaceBuffers = createIsosurfaceBuffers;
172
172
  //
173
173
  /**
174
174
  * GPU isosurface extraction
@@ -189,4 +189,3 @@ function extractIsosurface(ctx, volumeData, gridDim, gridTexDim, gridTexScale, t
189
189
  ctx.timer.markEnd('extractIsosurface');
190
190
  return gv;
191
191
  }
192
- exports.extractIsosurface = extractIsosurface;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.getTriIndices = exports.getTriCount = void 0;
8
+ exports.getTriCount = getTriCount;
9
+ exports.getTriIndices = getTriIndices;
9
10
  const tables_1 = require("../../../mol-geo/util/marching-cubes/tables");
10
11
  const util_1 = require("../../../mol-gl/renderable/util");
11
12
  let TriCount;
@@ -19,7 +20,6 @@ function getTriCount() {
19
20
  }
20
21
  return TriCount;
21
22
  }
22
- exports.getTriCount = getTriCount;
23
23
  let TriIndices;
24
24
  function getTriIndices() {
25
25
  if (TriIndices !== undefined)
@@ -38,4 +38,3 @@ function getTriIndices() {
38
38
  }
39
39
  return TriIndices;
40
40
  }
41
- exports.getTriIndices = getTriIndices;
@@ -5,7 +5,11 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.readAlphaTexture = exports.readTexture = exports.getSharedCopyRenderable = exports.createCopyRenderable = exports.QuadValues = exports.QuadSchema = exports.QuadPositions = void 0;
8
+ exports.QuadValues = exports.QuadSchema = exports.QuadPositions = void 0;
9
+ exports.createCopyRenderable = createCopyRenderable;
10
+ exports.getSharedCopyRenderable = getSharedCopyRenderable;
11
+ exports.readTexture = readTexture;
12
+ exports.readAlphaTexture = readAlphaTexture;
9
13
  const texture_1 = require("../../mol-gl/webgl/texture");
10
14
  const mol_util_1 = require("../../mol-util");
11
15
  const schema_1 = require("../../mol-gl/renderable/schema");
@@ -48,7 +52,6 @@ function createCopyRenderable(ctx, texture) {
48
52
  const renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', CopyShaderCode, schema, values);
49
53
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
50
54
  }
51
- exports.createCopyRenderable = createCopyRenderable;
52
55
  const SharedCopyName = 'shared-copy';
53
56
  function getSharedCopyRenderable(ctx, texture) {
54
57
  if (!ctx.namedComputeRenderables[SharedCopyName]) {
@@ -60,7 +63,6 @@ function getSharedCopyRenderable(ctx, texture) {
60
63
  copy.update();
61
64
  return copy;
62
65
  }
63
- exports.getSharedCopyRenderable = getSharedCopyRenderable;
64
66
  //
65
67
  const ReadTextureName = 'read-texture';
66
68
  const ReadAlphaTextureName = 'read-alpha-texture';
@@ -81,7 +83,6 @@ function readTexture(ctx, texture, array) {
81
83
  ctx.readPixels(0, 0, width, height, array);
82
84
  return { array, width, height };
83
85
  }
84
- exports.readTexture = readTexture;
85
86
  function readAlphaTexture(ctx, texture) {
86
87
  const { gl, state, resources } = ctx;
87
88
  if (texture.type !== gl.UNSIGNED_BYTE)
@@ -117,4 +118,3 @@ function readAlphaTexture(ctx, texture) {
117
118
  ctx.readPixels(0, 0, width, height, array);
118
119
  return { array, width, height };
119
120
  }
120
- exports.readAlphaTexture = readAlphaTexture;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.createRenderable = exports.createRenderObject = exports.getNextMaterialId = void 0;
8
+ exports.getNextMaterialId = void 0;
9
+ exports.createRenderObject = createRenderObject;
10
+ exports.createRenderable = createRenderable;
9
11
  const id_factory_1 = require("../mol-util/id-factory");
10
12
  const direct_volume_1 = require("./renderable/direct-volume");
11
13
  const mesh_1 = require("./renderable/mesh");
@@ -22,7 +24,6 @@ exports.getNextMaterialId = (0, id_factory_1.idFactory)(0, 0x7FFFFFFF);
22
24
  function createRenderObject(type, values, state, materialId) {
23
25
  return { id: getNextId(), type, values, state, materialId };
24
26
  }
25
- exports.createRenderObject = createRenderObject;
26
27
  function createRenderable(ctx, o, transparency) {
27
28
  switch (o.type) {
28
29
  case 'mesh': return (0, mesh_1.MeshRenderable)(ctx, o.id, o.values, o.state, o.materialId, transparency);
@@ -37,4 +38,3 @@ function createRenderable(ctx, o, transparency) {
37
38
  }
38
39
  throw new Error('unsupported type');
39
40
  }
40
- exports.createRenderable = createRenderable;