molstar 3.0.0 → 3.0.1

package/lib/commonjs/extensions/rcsb/validation-report/representation.js

@@ -1,243 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ClashesRepresentationProvider = exports.ClashesRepresentation = exports.getClashesParams = exports.ClashesParams = exports.InterUnitClashVisual = exports.InterUnitClashParams = exports.IntraUnitClashVisual = exports.IntraUnitClashParams = void 0;
-var tslib_1 = require("tslib");
-var param_definition_1 = require("../../../mol-util/param-definition");
-var structure_1 = require("../../../mol-model/structure");
-var mesh_1 = require("../../../mol-geo/geometry/mesh/mesh");
-var loci_1 = require("../../../mol-model/loci");
-var representation_1 = require("../../../mol-repr/representation");
-var representation_2 = require("../../../mol-repr/structure/representation");
-var link_1 = require("../../../mol-repr/structure/visual/util/link");
-var units_visual_1 = require("../../../mol-repr/structure/units-visual");
-var location_iterator_1 = require("../../../mol-geo/util/location-iterator");
-var prop_1 = require("./prop");
-var complex_visual_1 = require("../../../mol-repr/structure/complex-visual");
-var color_1 = require("../../../mol-util/color");
-var marker_action_1 = require("../../../mol-util/marker-action");
-var centroid_helper_1 = require("../../../mol-math/geometry/centroid-helper");
-var label_1 = require("../../../mol-theme/label");
-var params_1 = require("../../../mol-repr/structure/params");
-//
-function createIntraUnitClashCylinderMesh(ctx, unit, structure, theme, props, mesh) {
-    if (!structure_1.Unit.isAtomic(unit))
-        return mesh_1.Mesh.createEmpty(mesh);
-    var clashes = prop_1.ClashesProvider.get(structure).value.intraUnit.get(unit.id);
-    var edgeCount = clashes.edgeCount, a = clashes.a, b = clashes.b, edgeProps = clashes.edgeProps;
-    var magnitude = edgeProps.magnitude;
-    var sizeFactor = props.sizeFactor;
-    if (!edgeCount)
-        return mesh_1.Mesh.createEmpty(mesh);
-    var elements = unit.elements;
-    var pos = unit.conformation.invariantPosition;
-    var builderProps = {
-        linkCount: edgeCount * 2,
-        position: function (posA, posB, edgeIndex) {
-            pos(elements[a[edgeIndex]], posA);
-            pos(elements[b[edgeIndex]], posB);
-        },
-        style: function (edgeIndex) { return 6 /* Disk */; },
-        radius: function (edgeIndex) { return magnitude[edgeIndex] * sizeFactor; },
-    };
-    return (0, link_1.createLinkCylinderMesh)(ctx, builderProps, props, mesh);
-}
-exports.IntraUnitClashParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), link_1.LinkCylinderParams), { linkCap: param_definition_1.ParamDefinition.Boolean(true), sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.01 }) });
-function IntraUnitClashVisual(materialId) {
-    return (0, units_visual_1.UnitsMeshVisual)({
-        defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.IntraUnitClashParams),
-        createGeometry: createIntraUnitClashCylinderMesh,
-        createLocationIterator: createIntraClashIterator,
-        getLoci: getIntraClashLoci,
-        eachLocation: eachIntraClash,
-        setUpdateState: function (state, newProps, currentProps) {
-            state.createGeometry = (newProps.sizeFactor !== currentProps.sizeFactor ||
-                newProps.radialSegments !== currentProps.radialSegments ||
-                newProps.linkScale !== currentProps.linkScale ||
-                newProps.linkSpacing !== currentProps.linkSpacing ||
-                newProps.linkCap !== currentProps.linkCap);
-        }
-    }, materialId);
-}
-exports.IntraUnitClashVisual = IntraUnitClashVisual;
-function getIntraClashBoundingSphere(unit, clashes, elements, boundingSphere) {
-    return centroid_helper_1.CentroidHelper.fromPairProvider(elements.length, function (i, pA, pB) {
-        unit.conformation.position(unit.elements[clashes.a[elements[i]]], pA);
-        unit.conformation.position(unit.elements[clashes.b[elements[i]]], pB);
-    }, boundingSphere);
-}
-function getIntraClashLabel(structure, unit, clashes, elements) {
-    var idx = elements[0];
-    if (idx === undefined)
-        return '';
-    var _a = clashes.edgeProps, id = _a.id, magnitude = _a.magnitude, distance = _a.distance;
-    var mag = magnitude[idx].toFixed(2);
-    var dist = distance[idx].toFixed(2);
-    return [
-        "Clash id: ".concat(id[idx], " | Magnitude: ").concat(mag, " \u212B | Distance: ").concat(dist, " \u212B"),
-        (0, label_1.bondLabel)(structure_1.Bond.Location(structure, unit, clashes.a[idx], structure, unit, clashes.b[idx]))
-    ].join('</br>');
-}
-function IntraClashLoci(structure, unit, clashes, elements) {
-    return (0, loci_1.DataLoci)('intra-clashes', { unit: unit, clashes: clashes }, elements, function (boundingSphere) { return getIntraClashBoundingSphere(unit, clashes, elements, boundingSphere); }, function () { return getIntraClashLabel(structure, unit, clashes, elements); });
-}
-function getIntraClashLoci(pickingId, structureGroup, id) {
-    var objectId = pickingId.objectId, instanceId = pickingId.instanceId, groupId = pickingId.groupId;
-    if (id === objectId) {
-        var structure = structureGroup.structure, group = structureGroup.group;
-        var unit = group.units[instanceId];
-        if (structure_1.Unit.isAtomic(unit)) {
-            var clashes = prop_1.ClashesProvider.get(structure).value.intraUnit.get(unit.id);
-            return IntraClashLoci(structure, unit, clashes, [groupId]);
-        }
-    }
-    return loci_1.EmptyLoci;
-}
-function eachIntraClash(loci, structureGroup, apply) {
-    var changed = false;
-    // TODO
-    return changed;
-}
-function createIntraClashIterator(structureGroup) {
-    var structure = structureGroup.structure, group = structureGroup.group;
-    var unit = group.units[0];
-    var clashes = prop_1.ClashesProvider.get(structure).value.intraUnit.get(unit.id);
-    var a = clashes.a;
-    var groupCount = clashes.edgeCount * 2;
-    var instanceCount = group.units.length;
-    var location = structure_1.StructureElement.Location.create(structure);
-    var getLocation = function (groupIndex, instanceIndex) {
-        var unit = group.units[instanceIndex];
-        location.unit = unit;
-        location.element = unit.elements[a[groupIndex]];
-        return location;
-    };
-    return (0, location_iterator_1.LocationIterator)(groupCount, instanceCount, 1, getLocation);
-}
-//
-function createInterUnitClashCylinderMesh(ctx, structure, theme, props, mesh) {
-    var clashes = prop_1.ClashesProvider.get(structure).value.interUnit;
-    var edges = clashes.edges, edgeCount = clashes.edgeCount;
-    var sizeFactor = props.sizeFactor;
-    if (!edgeCount)
-        return mesh_1.Mesh.createEmpty(mesh);
-    var builderProps = {
-        linkCount: edgeCount,
-        position: function (posA, posB, edgeIndex) {
-            var b = edges[edgeIndex];
-            var uA = structure.unitMap.get(b.unitA);
-            var uB = structure.unitMap.get(b.unitB);
-            uA.conformation.position(uA.elements[b.indexA], posA);
-            uB.conformation.position(uB.elements[b.indexB], posB);
-        },
-        style: function (edgeIndex) { return 6 /* Disk */; },
-        radius: function (edgeIndex) { return edges[edgeIndex].props.magnitude * sizeFactor; }
-    };
-    return (0, link_1.createLinkCylinderMesh)(ctx, builderProps, props, mesh);
-}
-exports.InterUnitClashParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, complex_visual_1.ComplexMeshParams), link_1.LinkCylinderParams), { linkCap: param_definition_1.ParamDefinition.Boolean(true), sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.01 }) });
-function InterUnitClashVisual(materialId) {
-    return (0, complex_visual_1.ComplexMeshVisual)({
-        defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.InterUnitClashParams),
-        createGeometry: createInterUnitClashCylinderMesh,
-        createLocationIterator: createInterClashIterator,
-        getLoci: getInterClashLoci,
-        eachLocation: eachInterClash,
-        setUpdateState: function (state, newProps, currentProps) {
-            state.createGeometry = (newProps.sizeFactor !== currentProps.sizeFactor ||
-                newProps.radialSegments !== currentProps.radialSegments ||
-                newProps.linkScale !== currentProps.linkScale ||
-                newProps.linkSpacing !== currentProps.linkSpacing ||
-                newProps.linkCap !== currentProps.linkCap);
-        }
-    }, materialId);
-}
-exports.InterUnitClashVisual = InterUnitClashVisual;
-function getInterClashBoundingSphere(structure, clashes, elements, boundingSphere) {
-    return centroid_helper_1.CentroidHelper.fromPairProvider(elements.length, function (i, pA, pB) {
-        var c = clashes.edges[elements[i]];
-        var uA = structure.unitMap.get(c.unitA);
-        var uB = structure.unitMap.get(c.unitB);
-        uA.conformation.position(uA.elements[c.indexA], pA);
-        uB.conformation.position(uB.elements[c.indexB], pB);
-    }, boundingSphere);
-}
-function getInterClashLabel(structure, clashes, elements) {
-    var idx = elements[0];
-    if (idx === undefined)
-        return '';
-    var c = clashes.edges[idx];
-    var uA = structure.unitMap.get(c.unitA);
-    var uB = structure.unitMap.get(c.unitB);
-    var mag = c.props.magnitude.toFixed(2);
-    var dist = c.props.distance.toFixed(2);
-    return [
-        "Clash id: ".concat(c.props.id, " | Magnitude: ").concat(mag, " \u212B | Distance: ").concat(dist, " \u212B"),
-        (0, label_1.bondLabel)(structure_1.Bond.Location(structure, uA, c.indexA, structure, uB, c.indexB))
-    ].join('</br>');
-}
-function InterClashLoci(structure, clashes, elements) {
-    return (0, loci_1.DataLoci)('inter-clashes', clashes, elements, function (boundingSphere) { return getInterClashBoundingSphere(structure, clashes, elements, boundingSphere); }, function () { return getInterClashLabel(structure, clashes, elements); });
-}
-function getInterClashLoci(pickingId, structure, id) {
-    var objectId = pickingId.objectId, groupId = pickingId.groupId;
-    if (id === objectId) {
-        var clashes = prop_1.ClashesProvider.get(structure).value.interUnit;
-        return InterClashLoci(structure, clashes, [groupId]);
-    }
-    return loci_1.EmptyLoci;
-}
-function eachInterClash(loci, structure, apply) {
-    var changed = false;
-    // TODO
-    return changed;
-}
-function createInterClashIterator(structure) {
-    var clashes = prop_1.ClashesProvider.get(structure).value.interUnit;
-    var groupCount = clashes.edgeCount;
-    var instanceCount = 1;
-    var location = structure_1.StructureElement.Location.create(structure);
-    var getLocation = function (groupIndex) {
-        var clash = clashes.edges[groupIndex];
-        location.unit = structure.unitMap.get(clash.unitA);
-        location.element = location.unit.elements[clash.indexA];
-        return location;
-    };
-    return (0, location_iterator_1.LocationIterator)(groupCount, instanceCount, 1, getLocation, true);
-}
-//
-var ClashesVisuals = {
-    'intra-clash': function (ctx, getParams) { return (0, representation_2.UnitsRepresentation)('Intra-unit clash cylinder', ctx, getParams, IntraUnitClashVisual); },
-    'inter-clash': function (ctx, getParams) { return (0, representation_2.ComplexRepresentation)('Inter-unit clash cylinder', ctx, getParams, InterUnitClashVisual); },
-};
-exports.ClashesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.IntraUnitClashParams), exports.InterUnitClashParams), { unitKinds: (0, params_1.getUnitKindsParam)(['atomic']), visuals: param_definition_1.ParamDefinition.MultiSelect(['intra-clash', 'inter-clash'], param_definition_1.ParamDefinition.objectToOptions(ClashesVisuals)) });
-function getClashesParams(ctx, structure) {
-    return param_definition_1.ParamDefinition.clone(exports.ClashesParams);
-}
-exports.getClashesParams = getClashesParams;
-function ClashesRepresentation(ctx, getParams) {
-    var repr = representation_1.Representation.createMulti('Clashes', ctx, getParams, representation_2.StructureRepresentationStateBuilder, ClashesVisuals);
-    repr.setState({ markerActions: marker_action_1.MarkerActions.Highlighting });
-    return repr;
-}
-exports.ClashesRepresentation = ClashesRepresentation;
-exports.ClashesRepresentationProvider = (0, representation_2.StructureRepresentationProvider)({
-    name: prop_1.ValidationReport.Tag.Clashes,
-    label: 'Validation Clashes',
-    description: 'Displays clashes between atoms as disks. Data from wwPDB Validation Report, obtained via RCSB PDB.',
-    factory: ClashesRepresentation,
-    getParams: getClashesParams,
-    defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.ClashesParams),
-    defaultColorTheme: { name: 'uniform', props: { value: (0, color_1.Color)(0xFA28FF) } },
-    defaultSizeTheme: { name: 'physical' },
-    isApplicable: function (structure) { return structure.elementCount > 0; },
-    ensureCustomProperties: {
-        attach: function (ctx, structure) { return prop_1.ClashesProvider.attach(ctx, structure, void 0, true); },
-        detach: function (data) { return prop_1.ClashesProvider.ref(data, false); }
-    }
-});
-//# sourceMappingURL=representation.js.map

package/lib/commonjs/mol-canvas3d/camera/stereo.js

@@ -1,129 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- *
- * Adapted from three.js, The MIT License, Copyright © 2010-2020 three.js authors
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.StereoCamera = exports.DefaultStereoCameraProps = exports.StereoCameraParams = void 0;
-var tslib_1 = require("tslib");
-var linear_algebra_1 = require("../../mol-math/linear-algebra");
-var param_definition_1 = require("../../mol-util/param-definition");
-var camera_1 = require("../camera");
-var util_1 = require("./util");
-exports.StereoCameraParams = {
-    eyeSeparation: param_definition_1.ParamDefinition.Numeric(0.064, { min: 0.01, max: 0.5, step: 0.001 }),
-    focus: param_definition_1.ParamDefinition.Numeric(10, { min: 1, max: 100, step: 0.01 }),
-};
-exports.DefaultStereoCameraProps = param_definition_1.ParamDefinition.getDefaultValues(exports.StereoCameraParams);
-var StereoCamera = /** @class */ (function () {
-    function StereoCamera(parent, props) {
-        if (props === void 0) { props = {}; }
-        this.parent = parent;
-        this.left = new EyeCamera();
-        this.right = new EyeCamera();
-        this.props = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultStereoCameraProps), props);
-    }
-    Object.defineProperty(StereoCamera.prototype, "viewport", {
-        get: function () {
-            return this.parent.viewport;
-        },
-        enumerable: false,
-        configurable: true
-    });
-    Object.defineProperty(StereoCamera.prototype, "viewOffset", {
-        get: function () {
-            return this.parent.viewOffset;
-        },
-        enumerable: false,
-        configurable: true
-    });
-    StereoCamera.prototype.setProps = function (props) {
-        Object.assign(this.props, props);
-    };
-    StereoCamera.prototype.update = function () {
-        this.parent.update();
-        update(this.parent, this.props, this.left, this.right);
-    };
-    return StereoCamera;
-}());
-exports.StereoCamera = StereoCamera;
-(function (StereoCamera) {
-    function is(camera) {
-        return 'left' in camera && 'right' in camera;
-    }
-    StereoCamera.is = is;
-})(StereoCamera || (StereoCamera = {}));
-exports.StereoCamera = StereoCamera;
-var EyeCamera = /** @class */ (function () {
-    function EyeCamera() {
-        this.viewport = util_1.Viewport.create(0, 0, 0, 0);
-        this.view = (0, linear_algebra_1.Mat4)();
-        this.projection = (0, linear_algebra_1.Mat4)();
-        this.projectionView = (0, linear_algebra_1.Mat4)();
-        this.inverseProjectionView = (0, linear_algebra_1.Mat4)();
-        this.state = camera_1.Camera.createDefaultSnapshot();
-        this.viewOffset = camera_1.Camera.ViewOffset();
-        this.far = 0;
-        this.near = 0;
-        this.fogFar = 0;
-        this.fogNear = 0;
-    }
-    return EyeCamera;
-}());
-var eyeLeft = linear_algebra_1.Mat4.identity(), eyeRight = linear_algebra_1.Mat4.identity();
-function update(camera, props, left, right) {
-    // Copy the states
-    util_1.Viewport.copy(left.viewport, camera.viewport);
-    linear_algebra_1.Mat4.copy(left.view, camera.view);
-    linear_algebra_1.Mat4.copy(left.projection, camera.projection);
-    camera_1.Camera.copySnapshot(left.state, camera.state);
-    camera_1.Camera.copyViewOffset(left.viewOffset, camera.viewOffset);
-    left.far = camera.far;
-    left.near = camera.near;
-    left.fogFar = camera.fogFar;
-    left.fogNear = camera.fogNear;
-    util_1.Viewport.copy(right.viewport, camera.viewport);
-    linear_algebra_1.Mat4.copy(right.view, camera.view);
-    linear_algebra_1.Mat4.copy(right.projection, camera.projection);
-    camera_1.Camera.copySnapshot(right.state, camera.state);
-    camera_1.Camera.copyViewOffset(right.viewOffset, camera.viewOffset);
-    right.far = camera.far;
-    right.near = camera.near;
-    right.fogFar = camera.fogFar;
-    right.fogNear = camera.fogNear;
-    // update the view offsets
-    var w = Math.floor(camera.viewport.width / 2);
-    var aspect = w / camera.viewport.height;
-    left.viewport.width = w;
-    right.viewport.x += w;
-    right.viewport.width -= w;
-    // update the projection and view matrices
-    var eyeSepHalf = props.eyeSeparation / 2;
-    var eyeSepOnProjection = eyeSepHalf * camera.near / props.focus;
-    var ymax = camera.near * Math.tan(camera.state.fov * 0.5);
-    var xmin, xmax;
-    // translate xOffset
-    eyeLeft[12] = -eyeSepHalf;
-    eyeRight[12] = eyeSepHalf;
-    // for left eye
-    xmin = -ymax * aspect + eyeSepOnProjection;
-    xmax = ymax * aspect + eyeSepOnProjection;
-    left.projection[0] = 2 * camera.near / (xmax - xmin);
-    left.projection[8] = (xmax + xmin) / (xmax - xmin);
-    linear_algebra_1.Mat4.mul(left.view, left.view, eyeLeft);
-    linear_algebra_1.Mat4.mul(left.projectionView, left.projection, left.view);
-    linear_algebra_1.Mat4.invert(left.inverseProjectionView, left.projectionView);
-    // for right eye
-    xmin = -ymax * aspect - eyeSepOnProjection;
-    xmax = ymax * aspect - eyeSepOnProjection;
-    right.projection[0] = 2 * camera.near / (xmax - xmin);
-    right.projection[8] = (xmax + xmin) / (xmax - xmin);
-    linear_algebra_1.Mat4.mul(right.view, right.view, eyeRight);
-    linear_algebra_1.Mat4.mul(right.projectionView, right.projection, right.view);
-    linear_algebra_1.Mat4.invert(right.inverseProjectionView, right.projectionView);
-}
-//# sourceMappingURL=stereo.js.map

package/lib/commonjs/mol-canvas3d/camera/transition.js

@@ -1,103 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2018-2019 Mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.CameraTransitionManager = void 0;
-var camera_1 = require("../camera");
-var linear_algebra_1 = require("../../mol-math/linear-algebra");
-var interpolate_1 = require("../../mol-math/interpolate");
-var CameraTransitionManager = /** @class */ (function () {
-    function CameraTransitionManager(camera) {
-        this.camera = camera;
-        this.t = 0;
-        this.func = CameraTransitionManager.defaultTransition;
-        this.start = 0;
-        this.inTransition = false;
-        this.durationMs = 0;
-        this._source = camera_1.Camera.createDefaultSnapshot();
-        this._target = camera_1.Camera.createDefaultSnapshot();
-        this._current = camera_1.Camera.createDefaultSnapshot();
-    }
-    Object.defineProperty(CameraTransitionManager.prototype, "source", {
-        get: function () { return this._source; },
-        enumerable: false,
-        configurable: true
-    });
-    Object.defineProperty(CameraTransitionManager.prototype, "target", {
-        get: function () { return this._target; },
-        enumerable: false,
-        configurable: true
-    });
-    CameraTransitionManager.prototype.apply = function (to, durationMs, transition) {
-        if (durationMs === void 0) { durationMs = 0; }
-        if (!this.inTransition || durationMs > 0) {
-            camera_1.Camera.copySnapshot(this._source, this.camera.state);
-        }
-        if (!this.inTransition) {
-            camera_1.Camera.copySnapshot(this._target, this.camera.state);
-        }
-        camera_1.Camera.copySnapshot(this._target, to);
-        if (this._target.radius > this._target.radiusMax) {
-            this._target.radius = this._target.radiusMax;
-        }
-        if (this._target.radius < 0.01)
-            this._target.radius = 0.01;
-        if (this._target.radiusMax < 0.01)
-            this._target.radiusMax = 0.01;
-        if (!this.inTransition && durationMs <= 0 || (typeof to.mode !== 'undefined' && to.mode !== this.camera.state.mode)) {
-            this.finish(this._target);
-            return;
-        }
-        this.inTransition = true;
-        this.func = transition || CameraTransitionManager.defaultTransition;
-        if (!this.inTransition || durationMs > 0) {
-            this.start = this.t;
-            this.durationMs = durationMs;
-        }
-    };
-    CameraTransitionManager.prototype.tick = function (t) {
-        this.t = t;
-        this.update();
-    };
-    CameraTransitionManager.prototype.finish = function (to) {
-        camera_1.Camera.copySnapshot(this.camera.state, to);
-        this.inTransition = false;
-    };
-    CameraTransitionManager.prototype.update = function () {
-        if (!this.inTransition)
-            return;
-        var normalized = Math.min((this.t - this.start) / this.durationMs, 1);
-        if (normalized === 1) {
-            this.finish(this._target);
-            return;
-        }
-        this.func(this._current, normalized, this._source, this._target);
-        camera_1.Camera.copySnapshot(this.camera.state, this._current);
-    };
-    return CameraTransitionManager;
-}());
-exports.CameraTransitionManager = CameraTransitionManager;
-(function (CameraTransitionManager) {
-    var _rot = linear_algebra_1.Quat.identity();
-    function defaultTransition(out, t, source, target) {
-        camera_1.Camera.copySnapshot(out, target);
-        // Rotate up
-        linear_algebra_1.Quat.slerp(_rot, linear_algebra_1.Quat.Identity, linear_algebra_1.Quat.rotationTo(_rot, source.up, target.up), t);
-        linear_algebra_1.Vec3.transformQuat(out.up, source.up, _rot);
-        // Lerp target, position & radius
-        linear_algebra_1.Vec3.lerp(out.target, source.target, target.target, t);
-        linear_algebra_1.Vec3.lerp(out.position, source.position, target.position, t);
-        out.radius = (0, interpolate_1.lerp)(source.radius, target.radius, t);
-        // TODO take change of `clipFar` into account
-        out.radiusMax = (0, interpolate_1.lerp)(source.radiusMax, target.radiusMax, t);
-        // Lerp fov & fog
-        out.fov = (0, interpolate_1.lerp)(source.fov, target.fov, t);
-        out.fog = (0, interpolate_1.lerp)(source.fog, target.fog, t);
-    }
-    CameraTransitionManager.defaultTransition = defaultTransition;
-})(CameraTransitionManager || (CameraTransitionManager = {}));
-exports.CameraTransitionManager = CameraTransitionManager;
-//# sourceMappingURL=transition.js.map

package/lib/commonjs/mol-canvas3d/camera/util.d.ts

@@ -1,31 +0,0 @@
-/**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { Mat4, Vec3, Vec4 } from '../../mol-math/linear-algebra';
-export { Viewport };
-declare type Viewport = {
-    x: number;
-    y: number;
-    width: number;
-    height: number;
-};
-declare function Viewport(): Viewport;
-declare namespace Viewport {
-    function zero(): Viewport;
-    function create(x: number, y: number, width: number, height: number): Viewport;
-    function clone(viewport: Viewport): Viewport;
-    function copy(target: Viewport, source: Viewport): Viewport;
-    function set(viewport: Viewport, x: number, y: number, width: number, height: number): Viewport;
-    function toVec4(v4: Vec4, viewport: Viewport): Vec4;
-    function equals(a: Viewport, b: Viewport): boolean;
-}
-/** Transform point into 2D window coordinates. */
-export declare function cameraProject(out: Vec4, point: Vec3, viewport: Viewport, projectionView: Mat4): Vec4;
-/**
- * Transform point from screen space to 3D coordinates.
- * The point must have `x` and `y` set to 2D window coordinates
- * and `z` between 0 (near) and 1 (far); the optional `w` is not used.
- */
-export declare function cameraUnproject(out: Vec3, point: Vec3 | Vec4, viewport: Viewport, inverseProjectionView: Mat4): Vec3;

package/lib/commonjs/mol-canvas3d/camera/util.js

@@ -1,94 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.cameraUnproject = exports.cameraProject = exports.Viewport = void 0;
-var tslib_1 = require("tslib");
-var linear_algebra_1 = require("../../mol-math/linear-algebra");
-function Viewport() {
-    return Viewport.zero();
-}
-exports.Viewport = Viewport;
-(function (Viewport) {
-    function zero() {
-        return { x: 0, y: 0, width: 0, height: 0 };
-    }
-    Viewport.zero = zero;
-    function create(x, y, width, height) {
-        return { x: x, y: y, width: width, height: height };
-    }
-    Viewport.create = create;
-    function clone(viewport) {
-        return (0, tslib_1.__assign)({}, viewport);
-    }
-    Viewport.clone = clone;
-    function copy(target, source) {
-        return Object.assign(target, source);
-    }
-    Viewport.copy = copy;
-    function set(viewport, x, y, width, height) {
-        viewport.x = x;
-        viewport.y = y;
-        viewport.width = width;
-        viewport.height = height;
-        return viewport;
-    }
-    Viewport.set = set;
-    function toVec4(v4, viewport) {
-        v4[0] = viewport.x;
-        v4[1] = viewport.y;
-        v4[2] = viewport.width;
-        v4[3] = viewport.height;
-        return v4;
-    }
-    Viewport.toVec4 = toVec4;
-    function equals(a, b) {
-        return a.x === b.x && a.y === b.y && a.width === b.width && a.height === b.height;
-    }
-    Viewport.equals = equals;
-})(Viewport || (Viewport = {}));
-exports.Viewport = Viewport;
-//
-var tmpVec4 = (0, linear_algebra_1.Vec4)();
-/** Transform point into 2D window coordinates. */
-function cameraProject(out, point, viewport, projectionView) {
-    var x = viewport.x, y = viewport.y, width = viewport.width, height = viewport.height;
-    // clip space -> NDC -> window coordinates, implicit 1.0 for w component
-    linear_algebra_1.Vec4.set(tmpVec4, point[0], point[1], point[2], 1.0);
-    // transform into clip space
-    linear_algebra_1.Vec4.transformMat4(tmpVec4, tmpVec4, projectionView);
-    // transform into NDC
-    var w = tmpVec4[3];
-    if (w !== 0) {
-        tmpVec4[0] /= w;
-        tmpVec4[1] /= w;
-        tmpVec4[2] /= w;
-    }
-    // transform into window coordinates, set fourth component to 1 / clip.w as in gl_FragCoord.w
-    out[0] = (tmpVec4[0] + 1) * width * 0.5 + x;
-    out[1] = (1 - tmpVec4[1]) * height * 0.5 + y; // flip Y
-    out[2] = (tmpVec4[2] + 1) * 0.5;
-    out[3] = w === 0 ? 0 : 1 / w;
-    return out;
-}
-exports.cameraProject = cameraProject;
-/**
- * Transform point from screen space to 3D coordinates.
- * The point must have `x` and `y` set to 2D window coordinates
- * and `z` between 0 (near) and 1 (far); the optional `w` is not used.
- */
-function cameraUnproject(out, point, viewport, inverseProjectionView) {
-    var x = viewport.x, y = viewport.y, width = viewport.width, height = viewport.height;
-    var px = point[0] - x;
-    var py = (height - point[1] - 1) - y;
-    var pz = point[2];
-    out[0] = (2 * px) / width - 1;
-    out[1] = (2 * py) / height - 1;
-    out[2] = 2 * pz - 1;
-    return linear_algebra_1.Vec3.transformMat4(out, out, inverseProjectionView);
-}
-exports.cameraUnproject = cameraUnproject;
-//# sourceMappingURL=util.js.map