molstar 3.0.0 → 3.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1790) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +194 -194
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/viewer/app.js +6 -3
  8. package/lib/apps/viewer/embedded.html +43 -43
  9. package/lib/apps/viewer/index.html +106 -106
  10. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
  11. package/lib/commonjs/apps/viewer/app.d.ts +3 -3
  12. package/lib/commonjs/apps/viewer/app.js +8 -5
  13. package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
  14. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
  15. package/lib/commonjs/extensions/cellpack/representation.d.ts +2 -2
  16. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
  17. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
  18. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +2 -2
  19. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +5 -5
  20. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +2 -2
  21. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  22. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
  23. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
  24. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
  25. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
  26. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  27. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +1 -1
  28. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +1 -1
  29. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  30. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  31. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +2 -2
  32. package/lib/commonjs/mol-geo/geometry/base.d.ts +5 -5
  33. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +3 -3
  34. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
  35. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
  36. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -2
  37. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  38. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +4 -4
  39. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  40. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
  41. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  42. package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
  43. package/lib/commonjs/mol-gl/renderer.js +3 -3
  44. package/lib/commonjs/mol-gl/scene.d.ts +1 -1
  45. package/lib/commonjs/mol-model/loci.d.ts +20 -20
  46. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  47. package/lib/commonjs/mol-model/structure/model/properties/coarse/hierarchy.d.ts +1 -1
  48. package/lib/commonjs/mol-model/structure/model/properties/coarse/hierarchy.js +24 -2
  49. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
  50. package/lib/commonjs/mol-model/structure/structure/unit.d.ts +4 -4
  51. package/lib/commonjs/mol-model/volume/volume.d.ts +7 -0
  52. package/lib/commonjs/mol-model/volume/volume.js +18 -0
  53. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +6 -6
  54. package/lib/commonjs/mol-model-props/computed/interactions/common.d.ts +1 -1
  55. package/lib/commonjs/mol-model-props/computed/interactions/common.js +16 -24
  56. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +2 -2
  57. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +44 -18
  58. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
  59. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +14 -4
  60. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -3
  61. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
  62. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +2 -2
  63. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  64. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  65. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
  66. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +4 -4
  67. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  68. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +4 -4
  69. package/lib/commonjs/mol-plugin/commands.d.ts +2 -2
  70. package/lib/commonjs/mol-plugin/config.d.ts +1 -1
  71. package/lib/commonjs/mol-plugin/layout.d.ts +4 -4
  72. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -3
  73. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +1 -1
  74. package/lib/commonjs/mol-plugin-state/actions/volume.d.ts +1 -1
  75. package/lib/commonjs/mol-plugin-state/actions/volume.js +3 -3
  76. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +2 -2
  77. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +11 -11
  78. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +6 -6
  79. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +35 -13
  80. package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -1
  81. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +10 -10
  82. package/lib/commonjs/mol-plugin-state/formats/volume.js +1 -11
  83. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +5 -5
  84. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +2 -2
  85. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +1 -1
  86. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +1 -1
  87. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
  88. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +7 -7
  89. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +13 -13
  90. package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +1 -1
  91. package/lib/commonjs/mol-plugin-ui/structure/selection.d.ts +1 -1
  92. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +2 -2
  93. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +2 -2
  94. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +2 -2
  95. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +2 -2
  96. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +2 -2
  97. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +2 -2
  98. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -1
  99. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -1
  100. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +7 -7
  101. package/lib/commonjs/mol-repr/structure/params.d.ts +10 -10
  102. package/lib/commonjs/mol-repr/structure/registry.d.ts +25 -25
  103. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -3
  104. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +6 -6
  105. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
  106. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -3
  107. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +6 -6
  108. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +9 -9
  109. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  110. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +9 -9
  111. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +9 -9
  112. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +9 -9
  113. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -3
  114. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +6 -6
  115. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -3
  116. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -3
  117. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +10 -10
  118. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +4 -4
  119. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +2 -2
  120. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +4 -4
  121. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +2 -2
  122. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
  123. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
  124. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
  125. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -1
  126. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +2 -2
  127. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -2
  128. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
  129. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  130. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +12 -12
  131. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  132. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +3 -3
  133. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +3 -3
  134. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  135. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
  136. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
  137. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
  138. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
  139. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
  140. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
  141. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
  142. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
  143. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
  144. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +7 -7
  145. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +5 -4
  146. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +1 -1
  147. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +6 -6
  148. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +12 -12
  149. package/lib/commonjs/mol-repr/volume/registry.d.ts +8 -8
  150. package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
  151. package/lib/commonjs/mol-repr/volume/slice.d.ts +12 -12
  152. package/lib/commonjs/mol-theme/color/atom-id.d.ts +2 -2
  153. package/lib/commonjs/mol-theme/color/chain-id.d.ts +2 -2
  154. package/lib/commonjs/mol-theme/color/element-index.d.ts +2 -2
  155. package/lib/commonjs/mol-theme/color/element-symbol.d.ts +44 -0
  156. package/lib/commonjs/mol-theme/color/element-symbol.js +15 -10
  157. package/lib/commonjs/mol-theme/color/entity-id.d.ts +2 -2
  158. package/lib/commonjs/mol-theme/color/entity-id.js +14 -11
  159. package/lib/commonjs/mol-theme/color/entity-source.d.ts +2 -2
  160. package/lib/commonjs/mol-theme/color/illustrative.d.ts +36 -36
  161. package/lib/commonjs/mol-theme/color/model-index.d.ts +2 -2
  162. package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +2 -2
  163. package/lib/commonjs/mol-theme/color/operator-name.d.ts +2 -2
  164. package/lib/commonjs/mol-theme/color/polymer-id.d.ts +2 -2
  165. package/lib/commonjs/mol-theme/color/polymer-index.d.ts +2 -2
  166. package/lib/commonjs/mol-theme/color/unit-index.d.ts +2 -2
  167. package/lib/commonjs/mol-theme/color.d.ts +51 -29
  168. package/lib/commonjs/mol-util/clip.d.ts +1 -1
  169. package/lib/commonjs/mol-util/color/palette.d.ts +3 -3
  170. package/lib/examples/alpha-orbitals/index.html +61 -61
  171. package/lib/examples/basic-wrapper/index.html +137 -137
  172. package/lib/examples/lighting/index.html +88 -88
  173. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  174. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
  175. package/lib/mol-canvas3d/helper/interaction-events.js +1 -1
  176. package/lib/mol-canvas3d/passes/draw.d.ts +1 -1
  177. package/lib/mol-canvas3d/passes/draw.js +3 -3
  178. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
  179. package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
  180. package/lib/mol-geo/geometry/points/points.d.ts +1 -1
  181. package/lib/mol-gl/renderer.d.ts +2 -2
  182. package/lib/mol-gl/renderer.js +3 -3
  183. package/lib/mol-model/structure/model/properties/coarse/hierarchy.d.ts +1 -1
  184. package/lib/mol-model/structure/model/properties/coarse/hierarchy.js +24 -2
  185. package/lib/mol-model/volume/volume.d.ts +7 -0
  186. package/lib/mol-model/volume/volume.js +18 -0
  187. package/lib/mol-model-props/computed/interactions/common.d.ts +1 -1
  188. package/lib/mol-model-props/computed/interactions/common.js +16 -24
  189. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
  190. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +44 -18
  191. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +14 -4
  192. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  193. package/lib/mol-plugin/version.js +2 -2
  194. package/lib/mol-plugin-state/actions/volume.d.ts +1 -1
  195. package/lib/mol-plugin-state/actions/volume.js +3 -3
  196. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +27 -5
  197. package/lib/mol-plugin-state/formats/volume.js +1 -11
  198. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  199. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  200. package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
  201. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  202. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  203. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  204. package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
  205. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  206. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  207. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  208. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  209. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  210. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +127 -127
  211. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  212. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  213. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  214. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  215. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  216. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  217. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  218. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  219. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  220. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  221. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  222. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  223. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  224. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  225. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  226. package/lib/mol-repr/structure/visual/util/bond.d.ts +1 -1
  227. package/lib/mol-repr/structure/visual/util/bond.js +5 -4
  228. package/lib/mol-script/language/builder.d.ts +1 -0
  229. package/lib/mol-theme/color/element-symbol.d.ts +46 -2
  230. package/lib/mol-theme/color/element-symbol.js +15 -10
  231. package/lib/mol-theme/color/entity-id.js +14 -11
  232. package/lib/mol-theme/color/illustrative.d.ts +32 -32
  233. package/lib/mol-theme/color.d.ts +39 -17
  234. package/lib/servers/volume/config.js +3 -3
  235. package/lib/servers/volume/query.js +1 -1
  236. package/package.json +160 -163
  237. package/lib/commonjs/apps/docking-viewer/index.js +0 -253
  238. package/lib/commonjs/apps/docking-viewer/viewport.js +0 -326
  239. package/lib/commonjs/cli/chem-comp-dict/create-ions.d.ts +0 -7
  240. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +0 -68
  241. package/lib/commonjs/cli/chem-comp-dict/create-table.d.ts +0 -7
  242. package/lib/commonjs/cli/chem-comp-dict/create-table.js +0 -282
  243. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +0 -146
  244. package/lib/commonjs/cli/chem-comp-dict/util.js +0 -144
  245. package/lib/commonjs/cli/cif2bcif/converter.d.ts +0 -8
  246. package/lib/commonjs/cli/cif2bcif/converter.js +0 -187
  247. package/lib/commonjs/cli/cif2bcif/index.d.ts +0 -8
  248. package/lib/commonjs/cli/cif2bcif/index.js +0 -81
  249. package/lib/commonjs/cli/cifschema/index.d.ts +0 -7
  250. package/lib/commonjs/cli/cifschema/index.js +0 -397
  251. package/lib/commonjs/cli/cifschema/util/cif-dic.d.ts +0 -11
  252. package/lib/commonjs/cli/cifschema/util/cif-dic.js +0 -456
  253. package/lib/commonjs/cli/cifschema/util/generate.d.ts +0 -7
  254. package/lib/commonjs/cli/cifschema/util/generate.js +0 -158
  255. package/lib/commonjs/cli/cifschema/util/helper.d.ts +0 -10
  256. package/lib/commonjs/cli/cifschema/util/helper.js +0 -22
  257. package/lib/commonjs/cli/cifschema/util/schema.d.ts +0 -70
  258. package/lib/commonjs/cli/cifschema/util/schema.js +0 -64
  259. package/lib/commonjs/cli/lipid-params/index.d.ts +0 -7
  260. package/lib/commonjs/cli/lipid-params/index.js +0 -104
  261. package/lib/commonjs/cli/state-docs/index.js +0 -64
  262. package/lib/commonjs/cli/state-docs/pd-to-md.js +0 -80
  263. package/lib/commonjs/cli/structure-info/helpers.d.ts +0 -7
  264. package/lib/commonjs/cli/structure-info/helpers.js +0 -92
  265. package/lib/commonjs/cli/structure-info/model.js +0 -336
  266. package/lib/commonjs/cli/structure-info/volume.js +0 -115
  267. package/lib/commonjs/examples/alpha-orbitals/controls.js +0 -25
  268. package/lib/commonjs/examples/alpha-orbitals/example-data.js +0 -60260
  269. package/lib/commonjs/examples/alpha-orbitals/index.js +0 -230
  270. package/lib/commonjs/examples/basic-wrapper/coloring.js +0 -31
  271. package/lib/commonjs/examples/basic-wrapper/controls.js +0 -23
  272. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +0 -49
  273. package/lib/commonjs/examples/basic-wrapper/index.js +0 -265
  274. package/lib/commonjs/examples/basic-wrapper/superposition.js +0 -191
  275. package/lib/commonjs/examples/domain-annotation-server/mapping.d.ts +0 -6
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@@ -1,194 +0,0 @@
1
- /**
2
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
- *
4
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
- */
6
- import { mmCIF_Schema } from '../../../mol-io/reader/cif/schema/mmcif';
7
- import { Table } from '../../../mol-data/db';
8
- import { mmCIF_chemComp_schema } from '../../../mol-io/reader/cif/schema/mmcif-extras';
9
- export declare type Entry = Table<mmCIF_Schema['entry']>;
10
- export declare type Struct = Table<mmCIF_Schema['struct']>;
11
- export declare type StructAsym = Table<mmCIF_Schema['struct_asym']>;
12
- export declare type IhmModelList = Table<mmCIF_Schema['ihm_model_list']>;
13
- export declare type IhmModelGroup = Table<mmCIF_Schema['ihm_model_group']>;
14
- export declare type IhmModelGroupLink = Table<mmCIF_Schema['ihm_model_group_link']>;
15
- export declare type Entity = Table<mmCIF_Schema['entity']>;
16
- export declare type EntityPoly = Table<mmCIF_Schema['entity_poly']>;
17
- export declare type EntityPolySeq = Table<mmCIF_Schema['entity_poly_seq']>;
18
- export declare type EntityBranch = Table<mmCIF_Schema['pdbx_entity_branch']>;
19
- export declare type ChemComp = Table<mmCIF_chemComp_schema>;
20
- export declare type ChemCompIdentifier = Table<mmCIF_Schema['pdbx_chem_comp_identifier']>;
21
- export declare type AtomSite = Table<mmCIF_Schema['atom_site']>;
22
- export declare type IhmSphereObjSite = Table<mmCIF_Schema['ihm_sphere_obj_site']>;
23
- export declare type IhmGaussianObjSite = Table<mmCIF_Schema['ihm_gaussian_obj_site']>;
24
- export declare type UnobsOrZeroOccResidues = Table<mmCIF_Schema['pdbx_unobs_or_zero_occ_residues']>;
25
- export declare type Molecule = Table<mmCIF_Schema['pdbx_molecule']>;
26
- export declare const BasicSchema: {
27
- entry: {
28
- id: import("../../../mol-data/db/column").Column.Schema.Str;
29
- };
30
- struct: {
31
- entry_id: import("../../../mol-data/db/column").Column.Schema.Str;
32
- title: import("../../../mol-data/db/column").Column.Schema.Str;
33
- pdbx_descriptor: import("../../../mol-data/db/column").Column.Schema.Str;
34
- };
35
- struct_asym: {
36
- details: import("../../../mol-data/db/column").Column.Schema.Str;
37
- entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
38
- id: import("../../../mol-data/db/column").Column.Schema.Str;
39
- pdbx_modified: import("../../../mol-data/db/column").Column.Schema.Str;
40
- pdbx_blank_PDB_chainid_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"N" | "Y">;
41
- };
42
- ihm_model_list: {
43
- model_id: import("../../../mol-data/db/column").Column.Schema.Int;
44
- model_name: import("../../../mol-data/db/column").Column.Schema.Str;
45
- assembly_id: import("../../../mol-data/db/column").Column.Schema.Int;
46
- protocol_id: import("../../../mol-data/db/column").Column.Schema.Int;
47
- representation_id: import("../../../mol-data/db/column").Column.Schema.Int;
48
- };
49
- ihm_model_group: {
50
- id: import("../../../mol-data/db/column").Column.Schema.Int;
51
- name: import("../../../mol-data/db/column").Column.Schema.Str;
52
- details: import("../../../mol-data/db/column").Column.Schema.Str;
53
- };
54
- ihm_model_group_link: {
55
- model_id: import("../../../mol-data/db/column").Column.Schema.Int;
56
- group_id: import("../../../mol-data/db/column").Column.Schema.Int;
57
- };
58
- entity: {
59
- details: import("../../../mol-data/db/column").Column.Schema.Str;
60
- formula_weight: import("../../../mol-data/db/column").Column.Schema.Float;
61
- id: import("../../../mol-data/db/column").Column.Schema.Str;
62
- src_method: import("../../../mol-data/db/column").Column.Schema.Aliased<"nat" | "man" | "syn">;
63
- type: import("../../../mol-data/db/column").Column.Schema.Aliased<"non-polymer" | "polymer" | "macrolide" | "water" | "branched">;
64
- pdbx_description: import("../../../mol-data/db/column").Column.Schema.List<string>;
65
- pdbx_number_of_molecules: import("../../../mol-data/db/column").Column.Schema.Int;
66
- pdbx_mutation: import("../../../mol-data/db/column").Column.Schema.Str;
67
- pdbx_fragment: import("../../../mol-data/db/column").Column.Schema.Str;
68
- pdbx_ec: import("../../../mol-data/db/column").Column.Schema.List<string>;
69
- };
70
- entity_poly: {
71
- entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
72
- nstd_linkage: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
73
- nstd_monomer: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
74
- type: import("../../../mol-data/db/column").Column.Schema.Aliased<"other" | "polypeptide(D)" | "polypeptide(L)" | "polydeoxyribonucleotide" | "polyribonucleotide" | "polydeoxyribonucleotide/polyribonucleotide hybrid" | "cyclic-pseudo-peptide" | "peptide nucleic acid">;
75
- pdbx_strand_id: import("../../../mol-data/db/column").Column.Schema.List<string>;
76
- pdbx_seq_one_letter_code: import("../../../mol-data/db/column").Column.Schema.Str;
77
- pdbx_seq_one_letter_code_can: import("../../../mol-data/db/column").Column.Schema.Str;
78
- pdbx_target_identifier: import("../../../mol-data/db/column").Column.Schema.Str;
79
- };
80
- entity_poly_seq: {
81
- entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
82
- hetero: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
83
- mon_id: import("../../../mol-data/db/column").Column.Schema.Str;
84
- num: import("../../../mol-data/db/column").Column.Schema.Int;
85
- };
86
- pdbx_entity_branch: {
87
- entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
88
- type: import("../../../mol-data/db/column").Column.Schema.Aliased<"oligosaccharide">;
89
- };
90
- chem_comp: {
91
- type: import("../../../mol-data/db/column").Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
92
- formula: import("../../../mol-data/db/column").Column.Schema.Str;
93
- formula_weight: import("../../../mol-data/db/column").Column.Schema.Float;
94
- id: import("../../../mol-data/db/column").Column.Schema.Str;
95
- mon_nstd_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
96
- name: import("../../../mol-data/db/column").Column.Schema.Str;
97
- pdbx_synonyms: import("../../../mol-data/db/column").Column.Schema.List<string>;
98
- };
99
- pdbx_chem_comp_identifier: {
100
- comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
101
- identifier: import("../../../mol-data/db/column").Column.Schema.Str;
102
- type: import("../../../mol-data/db/column").Column.Schema.Aliased<"COMMON NAME" | "SYSTEMATIC NAME" | "CAS REGISTRY NUMBER" | "PUBCHEM Identifier" | "MDL Identifier" | "SYNONYM" | "CONDENSED IUPAC CARB SYMBOL" | "IUPAC CARB SYMBOL" | "SNFG CARB SYMBOL" | "CONDENSED IUPAC CARBOHYDRATE SYMBOL" | "IUPAC CARBOHYDRATE SYMBOL" | "SNFG CARBOHYDRATE SYMBOL">;
103
- program: import("../../../mol-data/db/column").Column.Schema.Str;
104
- program_version: import("../../../mol-data/db/column").Column.Schema.Str;
105
- };
106
- atom_site: {
107
- auth_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
108
- auth_atom_id: import("../../../mol-data/db/column").Column.Schema.Str;
109
- auth_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
110
- auth_seq_id: import("../../../mol-data/db/column").Column.Schema.Int;
111
- B_iso_or_equiv: import("../../../mol-data/db/column").Column.Schema.Float;
112
- Cartn_x: import("../../../mol-data/db/column").Column.Schema.Coordinate;
113
- Cartn_y: import("../../../mol-data/db/column").Column.Schema.Coordinate;
114
- Cartn_z: import("../../../mol-data/db/column").Column.Schema.Coordinate;
115
- group_PDB: import("../../../mol-data/db/column").Column.Schema.Aliased<"ATOM" | "HETATM">;
116
- id: import("../../../mol-data/db/column").Column.Schema.Int;
117
- label_alt_id: import("../../../mol-data/db/column").Column.Schema.Str;
118
- label_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
119
- label_atom_id: import("../../../mol-data/db/column").Column.Schema.Str;
120
- label_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
121
- label_entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
122
- label_seq_id: import("../../../mol-data/db/column").Column.Schema.Int;
123
- occupancy: import("../../../mol-data/db/column").Column.Schema.Float;
124
- type_symbol: import("../../../mol-data/db/column").Column.Schema.Str;
125
- pdbx_PDB_ins_code: import("../../../mol-data/db/column").Column.Schema.Str;
126
- pdbx_PDB_model_num: import("../../../mol-data/db/column").Column.Schema.Int;
127
- pdbx_formal_charge: import("../../../mol-data/db/column").Column.Schema.Int;
128
- ihm_model_id: import("../../../mol-data/db/column").Column.Schema.Int;
129
- };
130
- ihm_sphere_obj_site: {
131
- id: import("../../../mol-data/db/column").Column.Schema.Int;
132
- entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
133
- seq_id_begin: import("../../../mol-data/db/column").Column.Schema.Int;
134
- seq_id_end: import("../../../mol-data/db/column").Column.Schema.Int;
135
- asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
136
- Cartn_x: import("../../../mol-data/db/column").Column.Schema.Float;
137
- Cartn_y: import("../../../mol-data/db/column").Column.Schema.Float;
138
- Cartn_z: import("../../../mol-data/db/column").Column.Schema.Float;
139
- object_radius: import("../../../mol-data/db/column").Column.Schema.Float;
140
- rmsf: import("../../../mol-data/db/column").Column.Schema.Float;
141
- model_id: import("../../../mol-data/db/column").Column.Schema.Int;
142
- };
143
- ihm_gaussian_obj_site: {
144
- id: import("../../../mol-data/db/column").Column.Schema.Int;
145
- entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
146
- seq_id_begin: import("../../../mol-data/db/column").Column.Schema.Int;
147
- seq_id_end: import("../../../mol-data/db/column").Column.Schema.Int;
148
- asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
149
- mean_Cartn_x: import("../../../mol-data/db/column").Column.Schema.Float;
150
- mean_Cartn_y: import("../../../mol-data/db/column").Column.Schema.Float;
151
- mean_Cartn_z: import("../../../mol-data/db/column").Column.Schema.Float;
152
- weight: import("../../../mol-data/db/column").Column.Schema.Float;
153
- covariance_matrix: import("../../../mol-data/db/column").Column.Schema.Tensor;
154
- model_id: import("../../../mol-data/db/column").Column.Schema.Int;
155
- };
156
- pdbx_unobs_or_zero_occ_residues: {
157
- id: import("../../../mol-data/db/column").Column.Schema.Int;
158
- polymer_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"N" | "Y">;
159
- occupancy_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"1" | "0">;
160
- PDB_model_num: import("../../../mol-data/db/column").Column.Schema.Int;
161
- auth_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
162
- auth_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
163
- auth_seq_id: import("../../../mol-data/db/column").Column.Schema.Str;
164
- PDB_ins_code: import("../../../mol-data/db/column").Column.Schema.Str;
165
- label_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
166
- label_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
167
- label_seq_id: import("../../../mol-data/db/column").Column.Schema.Int;
168
- };
169
- pdbx_molecule: {
170
- prd_id: import("../../../mol-data/db/column").Column.Schema.Str;
171
- instance_id: import("../../../mol-data/db/column").Column.Schema.Int;
172
- asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
173
- };
174
- };
175
- export interface BasicData {
176
- entry: Entry;
177
- struct: Struct;
178
- struct_asym: StructAsym;
179
- ihm_model_list: IhmModelList;
180
- ihm_model_group: IhmModelGroup;
181
- ihm_model_group_link: IhmModelGroupLink;
182
- entity: Entity;
183
- entity_poly: EntityPoly;
184
- entity_poly_seq: EntityPolySeq;
185
- pdbx_entity_branch: EntityBranch;
186
- chem_comp: ChemComp;
187
- pdbx_chem_comp_identifier: ChemCompIdentifier;
188
- atom_site: AtomSite;
189
- ihm_sphere_obj_site: IhmSphereObjSite;
190
- ihm_gaussian_obj_site: IhmGaussianObjSite;
191
- pdbx_unobs_or_zero_occ_residues: UnobsOrZeroOccResidues;
192
- pdbx_molecule: Molecule;
193
- }
194
- export declare function createBasic(data: Partial<BasicData>): BasicData;
@@ -1,45 +0,0 @@
1
- "use strict";
2
- /**
3
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
- *
5
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
- */
7
- Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.createBasic = exports.BasicSchema = void 0;
9
- var mmcif_1 = require("../../../mol-io/reader/cif/schema/mmcif");
10
- var db_1 = require("../../../mol-data/db");
11
- var mmcif_extras_1 = require("../../../mol-io/reader/cif/schema/mmcif-extras");
12
- exports.BasicSchema = {
13
- entry: mmcif_1.mmCIF_Schema.entry,
14
- struct: mmcif_1.mmCIF_Schema.struct,
15
- struct_asym: mmcif_1.mmCIF_Schema.struct_asym,
16
- ihm_model_list: mmcif_1.mmCIF_Schema.ihm_model_list,
17
- ihm_model_group: mmcif_1.mmCIF_Schema.ihm_model_group,
18
- ihm_model_group_link: mmcif_1.mmCIF_Schema.ihm_model_group_link,
19
- entity: mmcif_1.mmCIF_Schema.entity,
20
- entity_poly: mmcif_1.mmCIF_Schema.entity_poly,
21
- entity_poly_seq: mmcif_1.mmCIF_Schema.entity_poly_seq,
22
- pdbx_entity_branch: mmcif_1.mmCIF_Schema.pdbx_entity_branch,
23
- chem_comp: mmcif_extras_1.mmCIF_chemComp_schema,
24
- pdbx_chem_comp_identifier: mmcif_1.mmCIF_Schema.pdbx_chem_comp_identifier,
25
- atom_site: mmcif_1.mmCIF_Schema.atom_site,
26
- ihm_sphere_obj_site: mmcif_1.mmCIF_Schema.ihm_sphere_obj_site,
27
- ihm_gaussian_obj_site: mmcif_1.mmCIF_Schema.ihm_gaussian_obj_site,
28
- pdbx_unobs_or_zero_occ_residues: mmcif_1.mmCIF_Schema.pdbx_unobs_or_zero_occ_residues,
29
- pdbx_molecule: mmcif_1.mmCIF_Schema.pdbx_molecule,
30
- };
31
- function createBasic(data) {
32
- var basic = Object.create(null);
33
- for (var _i = 0, _a = Object.keys(exports.BasicSchema); _i < _a.length; _i++) {
34
- var name_1 = _a[_i];
35
- if (name_1 in data) {
36
- basic[name_1] = data[name_1];
37
- }
38
- else {
39
- basic[name_1] = db_1.Table.ofUndefinedColumns(exports.BasicSchema[name_1], 0);
40
- }
41
- }
42
- return basic;
43
- }
44
- exports.createBasic = createBasic;
45
- //# sourceMappingURL=schema.js.map
@@ -1,40 +0,0 @@
1
- "use strict";
2
- /**
3
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
- *
5
- * @author David Sehnal <david.sehnal@gmail.com>
6
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
7
- */
8
- Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.getSequence = void 0;
10
- var sequence_1 = require("../../../mol-model/structure/model/properties/sequence");
11
- var db_1 = require("../../../mol-data/db");
12
- var sequence_2 = require("../../../mol-model/sequence");
13
- function getSequence(data, entities, atomicHierarchy, coarseHierarchy) {
14
- if (!data.entity_poly_seq || !data.entity_poly_seq._rowCount) {
15
- return sequence_1.StructureSequence.fromHierarchy(entities, atomicHierarchy, coarseHierarchy);
16
- }
17
- var _a = data.entity_poly_seq, entity_id = _a.entity_id, num = _a.num, mon_id = _a.mon_id;
18
- var byEntityKey = {};
19
- var sequences = [];
20
- var count = entity_id.rowCount;
21
- var i = 0;
22
- while (i < count) {
23
- var start = i;
24
- while (i < count - 1 && entity_id.areValuesEqual(i, i + 1))
25
- i++;
26
- i++;
27
- var id = entity_id.value(start);
28
- var compId = db_1.Column.window(mon_id, start, i);
29
- var seqId = db_1.Column.window(num, start, i);
30
- var entityKey = entities.getEntityIndex(id);
31
- byEntityKey[entityKey] = {
32
- entityId: id,
33
- sequence: sequence_2.Sequence.ofResidueNames(compId, seqId)
34
- };
35
- sequences.push(byEntityKey[entityKey]);
36
- }
37
- return { byEntityKey: byEntityKey, sequences: sequences };
38
- }
39
- exports.getSequence = getSequence;
40
- //# sourceMappingURL=sequence.js.map
@@ -1,13 +0,0 @@
1
- /**
2
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
- *
4
- * @author David Sehnal <david.sehnal@gmail.com>
5
- */
6
- import { Column } from '../../../mol-data/db';
7
- import { RuntimeContext } from '../../../mol-task';
8
- import { AtomSite } from './schema';
9
- export declare type SortedAtomSite = {
10
- atom_site: AtomSite;
11
- sourceIndex: Column<number>;
12
- };
13
- export declare function sortAtomSite(ctx: RuntimeContext, atom_site: AtomSite, start: number, end: number): Promise<SortedAtomSite>;
@@ -1,72 +0,0 @@
1
- "use strict";
2
- /**
3
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
- *
5
- * @author David Sehnal <david.sehnal@gmail.com>
6
- */
7
- Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.sortAtomSite = void 0;
9
- var tslib_1 = require("tslib");
10
- var util_1 = require("../../../mol-data/util");
11
- var db_1 = require("../../../mol-data/db");
12
- var array_1 = require("../../../mol-util/array");
13
- function sortAtomSite(ctx, atom_site, start, end) {
14
- return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
15
- var indices, label_entity_id, label_asym_id, label_seq_id, entityBuckets, ei, _eI, chainBuckets, cI, _cI, aI;
16
- return (0, tslib_1.__generator)(this, function (_a) {
17
- switch (_a.label) {
18
- case 0:
19
- indices = (0, util_1.createRangeArray)(start, end - 1);
20
- label_entity_id = atom_site.label_entity_id, label_asym_id = atom_site.label_asym_id, label_seq_id = atom_site.label_seq_id;
21
- entityBuckets = (0, util_1.makeBuckets)(indices, label_entity_id.value);
22
- if (!ctx.shouldUpdate) return [3 /*break*/, 2];
23
- return [4 /*yield*/, ctx.update()];
24
- case 1:
25
- _a.sent();
26
- _a.label = 2;
27
- case 2:
28
- ei = 0, _eI = entityBuckets.length - 1;
29
- _a.label = 3;
30
- case 3:
31
- if (!(ei < _eI)) return [3 /*break*/, 10];
32
- chainBuckets = (0, util_1.makeBuckets)(indices, label_asym_id.value, { start: entityBuckets[ei], end: entityBuckets[ei + 1] });
33
- cI = 0, _cI = chainBuckets.length - 1;
34
- _a.label = 4;
35
- case 4:
36
- if (!(cI < _cI)) return [3 /*break*/, 7];
37
- aI = chainBuckets[cI];
38
- // are we in HETATM territory?
39
- if (label_seq_id.valueKind(aI) !== 0 /* Present */)
40
- return [3 /*break*/, 6];
41
- (0, util_1.makeBuckets)(indices, label_seq_id.value, { sort: true, start: aI, end: chainBuckets[cI + 1] });
42
- if (!ctx.shouldUpdate) return [3 /*break*/, 6];
43
- return [4 /*yield*/, ctx.update()];
44
- case 5:
45
- _a.sent();
46
- _a.label = 6;
47
- case 6:
48
- cI++;
49
- return [3 /*break*/, 4];
50
- case 7:
51
- if (!ctx.shouldUpdate) return [3 /*break*/, 9];
52
- return [4 /*yield*/, ctx.update()];
53
- case 8:
54
- _a.sent();
55
- _a.label = 9;
56
- case 9:
57
- ei++;
58
- return [3 /*break*/, 3];
59
- case 10:
60
- if ((0, array_1.arrayIsIdentity)(indices) && indices.length === atom_site._rowCount) {
61
- return [2 /*return*/, { atom_site: atom_site, sourceIndex: db_1.Column.ofIntArray(indices) }];
62
- }
63
- return [2 /*return*/, {
64
- atom_site: db_1.Table.view(atom_site, atom_site._schema, indices),
65
- sourceIndex: db_1.Column.ofIntArray(indices)
66
- }];
67
- }
68
- });
69
- });
70
- }
71
- exports.sortAtomSite = sortAtomSite;
72
- //# sourceMappingURL=sort.js.map
@@ -1,8 +0,0 @@
1
- /**
2
- * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
- *
4
- * @author David Sehnal <david.sehnal@gmail.com>
5
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
- */
7
- import { BasicData } from './schema';
8
- export declare function getModelGroupName(model_id: number, data: BasicData): string;
@@ -1,22 +0,0 @@
1
- "use strict";
2
- /**
3
- * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
- *
5
- * @author David Sehnal <david.sehnal@gmail.com>
6
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
7
- */
8
- Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.getModelGroupName = void 0;
10
- var db_1 = require("../../../mol-data/db");
11
- function getModelGroupName(model_id, data) {
12
- var ihm_model_group = data.ihm_model_group, ihm_model_group_link = data.ihm_model_group_link;
13
- var link = db_1.Table.pickRow(ihm_model_group_link, function (i) { return ihm_model_group_link.model_id.value(i) === model_id; });
14
- if (link) {
15
- var group = db_1.Table.pickRow(ihm_model_group, function (i) { return ihm_model_group.id.value(i) === link.group_id; });
16
- if (group)
17
- return group.name;
18
- }
19
- return '';
20
- }
21
- exports.getModelGroupName = getModelGroupName;
22
- //# sourceMappingURL=util.js.map