molstar 3.0.0 → 3.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +194 -194
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +106 -106
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/viewer/app.js +6 -3
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.html +106 -106
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
- package/lib/commonjs/apps/viewer/app.d.ts +3 -3
- package/lib/commonjs/apps/viewer/app.js +8 -5
- package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
- package/lib/commonjs/extensions/cellpack/representation.d.ts +2 -2
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +5 -5
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/base.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +4 -4
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
- package/lib/commonjs/mol-gl/renderer.js +3 -3
- package/lib/commonjs/mol-gl/scene.d.ts +1 -1
- package/lib/commonjs/mol-model/loci.d.ts +20 -20
- package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/coarse/hierarchy.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/coarse/hierarchy.js +24 -2
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +4 -4
- package/lib/commonjs/mol-model/volume/volume.d.ts +7 -0
- package/lib/commonjs/mol-model/volume/volume.js +18 -0
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +6 -6
- package/lib/commonjs/mol-model-props/computed/interactions/common.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/common.js +16 -24
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +44 -18
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +14 -4
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -3
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
- package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +2 -2
- package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +4 -4
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +4 -4
- package/lib/commonjs/mol-plugin/commands.d.ts +2 -2
- package/lib/commonjs/mol-plugin/config.d.ts +1 -1
- package/lib/commonjs/mol-plugin/layout.d.ts +4 -4
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/actions/volume.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/actions/volume.js +3 -3
- package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +11 -11
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +35 -13
- package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +10 -10
- package/lib/commonjs/mol-plugin-state/formats/volume.js +1 -11
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +5 -5
- package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +7 -7
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +13 -13
- package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/selection.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +7 -7
- package/lib/commonjs/mol-repr/structure/params.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/registry.d.ts +25 -25
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +9 -9
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +9 -9
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +9 -9
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +9 -9
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +12 -12
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +7 -7
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +5 -4
- package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +1 -1
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +6 -6
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +12 -12
- package/lib/commonjs/mol-repr/volume/registry.d.ts +8 -8
- package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/volume/slice.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/atom-id.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/chain-id.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/element-index.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/element-symbol.d.ts +44 -0
- package/lib/commonjs/mol-theme/color/element-symbol.js +15 -10
- package/lib/commonjs/mol-theme/color/entity-id.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/entity-id.js +14 -11
- package/lib/commonjs/mol-theme/color/entity-source.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/illustrative.d.ts +36 -36
- package/lib/commonjs/mol-theme/color/model-index.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/operator-name.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/polymer-id.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/polymer-index.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/unit-index.d.ts +2 -2
- package/lib/commonjs/mol-theme/color.d.ts +51 -29
- package/lib/commonjs/mol-util/clip.d.ts +1 -1
- package/lib/commonjs/mol-util/color/palette.d.ts +3 -3
- package/lib/examples/alpha-orbitals/index.html +61 -61
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
- package/lib/mol-canvas3d/helper/interaction-events.js +1 -1
- package/lib/mol-canvas3d/passes/draw.d.ts +1 -1
- package/lib/mol-canvas3d/passes/draw.js +3 -3
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
- package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/mol-gl/renderer.d.ts +2 -2
- package/lib/mol-gl/renderer.js +3 -3
- package/lib/mol-model/structure/model/properties/coarse/hierarchy.d.ts +1 -1
- package/lib/mol-model/structure/model/properties/coarse/hierarchy.js +24 -2
- package/lib/mol-model/volume/volume.d.ts +7 -0
- package/lib/mol-model/volume/volume.js +18 -0
- package/lib/mol-model-props/computed/interactions/common.d.ts +1 -1
- package/lib/mol-model-props/computed/interactions/common.js +16 -24
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +44 -18
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +14 -4
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/volume.d.ts +1 -1
- package/lib/mol-plugin-state/actions/volume.js +3 -3
- package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +27 -5
- package/lib/mol-plugin-state/formats/volume.js +1 -11
- package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +127 -127
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-repr/structure/visual/util/bond.d.ts +1 -1
- package/lib/mol-repr/structure/visual/util/bond.js +5 -4
- package/lib/mol-script/language/builder.d.ts +1 -0
- package/lib/mol-theme/color/element-symbol.d.ts +46 -2
- package/lib/mol-theme/color/element-symbol.js +15 -10
- package/lib/mol-theme/color/entity-id.js +14 -11
- package/lib/mol-theme/color/illustrative.d.ts +32 -32
- package/lib/mol-theme/color.d.ts +39 -17
- package/lib/servers/volume/config.js +3 -3
- package/lib/servers/volume/query.js +1 -1
- package/package.json +160 -163
- package/lib/commonjs/apps/docking-viewer/index.js +0 -253
- package/lib/commonjs/apps/docking-viewer/viewport.js +0 -326
- package/lib/commonjs/cli/chem-comp-dict/create-ions.d.ts +0 -7
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +0 -68
- package/lib/commonjs/cli/chem-comp-dict/create-table.d.ts +0 -7
- package/lib/commonjs/cli/chem-comp-dict/create-table.js +0 -282
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +0 -146
- package/lib/commonjs/cli/chem-comp-dict/util.js +0 -144
- package/lib/commonjs/cli/cif2bcif/converter.d.ts +0 -8
- package/lib/commonjs/cli/cif2bcif/converter.js +0 -187
- package/lib/commonjs/cli/cif2bcif/index.d.ts +0 -8
- package/lib/commonjs/cli/cif2bcif/index.js +0 -81
- package/lib/commonjs/cli/cifschema/index.d.ts +0 -7
- package/lib/commonjs/cli/cifschema/index.js +0 -397
- package/lib/commonjs/cli/cifschema/util/cif-dic.d.ts +0 -11
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +0 -456
- package/lib/commonjs/cli/cifschema/util/generate.d.ts +0 -7
- package/lib/commonjs/cli/cifschema/util/generate.js +0 -158
- package/lib/commonjs/cli/cifschema/util/helper.d.ts +0 -10
- package/lib/commonjs/cli/cifschema/util/helper.js +0 -22
- package/lib/commonjs/cli/cifschema/util/schema.d.ts +0 -70
- package/lib/commonjs/cli/cifschema/util/schema.js +0 -64
- package/lib/commonjs/cli/lipid-params/index.d.ts +0 -7
- package/lib/commonjs/cli/lipid-params/index.js +0 -104
- package/lib/commonjs/cli/state-docs/index.js +0 -64
- package/lib/commonjs/cli/state-docs/pd-to-md.js +0 -80
- package/lib/commonjs/cli/structure-info/helpers.d.ts +0 -7
- package/lib/commonjs/cli/structure-info/helpers.js +0 -92
- package/lib/commonjs/cli/structure-info/model.js +0 -336
- package/lib/commonjs/cli/structure-info/volume.js +0 -115
- package/lib/commonjs/examples/alpha-orbitals/controls.js +0 -25
- package/lib/commonjs/examples/alpha-orbitals/example-data.js +0 -60260
- package/lib/commonjs/examples/alpha-orbitals/index.js +0 -230
- package/lib/commonjs/examples/basic-wrapper/coloring.js +0 -31
- package/lib/commonjs/examples/basic-wrapper/controls.js +0 -23
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +0 -49
- package/lib/commonjs/examples/basic-wrapper/index.js +0 -265
- package/lib/commonjs/examples/basic-wrapper/superposition.js +0 -191
- package/lib/commonjs/examples/domain-annotation-server/mapping.d.ts +0 -6
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +0 -111
- package/lib/commonjs/examples/domain-annotation-server/schemas.d.ts +0 -103
- package/lib/commonjs/examples/domain-annotation-server/schemas.js +0 -73
- package/lib/commonjs/examples/domain-annotation-server/server.d.ts +0 -6
- package/lib/commonjs/examples/domain-annotation-server/server.js +0 -65
- package/lib/commonjs/examples/domain-annotation-server/test.d.ts +0 -6
- package/lib/commonjs/examples/domain-annotation-server/test.js +0 -28
- package/lib/commonjs/examples/lighting/index.js +0 -145
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +0 -88
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +0 -97
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +0 -109
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +0 -498
- package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +0 -19
- package/lib/commonjs/examples/task.d.ts +0 -19
- package/lib/commonjs/examples/task.js +0 -221
- package/lib/commonjs/extensions/alpha-orbitals/collocation.js +0 -134
- package/lib/commonjs/extensions/alpha-orbitals/data-model.js +0 -69
- package/lib/commonjs/extensions/alpha-orbitals/density.js +0 -113
- package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +0 -157
- package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.d.ts +0 -7
- package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +0 -11
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +0 -121
- package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.d.ts +0 -11
- package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +0 -66
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +0 -261
- package/lib/commonjs/extensions/anvil/algorithm.js +0 -578
- package/lib/commonjs/extensions/anvil/behavior.js +0 -209
- package/lib/commonjs/extensions/anvil/prop.js +0 -82
- package/lib/commonjs/extensions/anvil/representation.js +0 -118
- package/lib/commonjs/extensions/cellpack/color/generate.js +0 -86
- package/lib/commonjs/extensions/cellpack/color/provided.js +0 -68
- package/lib/commonjs/extensions/cellpack/curve.d.ts +0 -9
- package/lib/commonjs/extensions/cellpack/curve.js +0 -203
- package/lib/commonjs/extensions/cellpack/data.d.ts +0 -107
- package/lib/commonjs/extensions/cellpack/data.js +0 -8
- package/lib/commonjs/extensions/cellpack/index.js +0 -39
- package/lib/commonjs/extensions/cellpack/model.js +0 -903
- package/lib/commonjs/extensions/cellpack/preset.js +0 -109
- package/lib/commonjs/extensions/cellpack/property.js +0 -31
- package/lib/commonjs/extensions/cellpack/representation.js +0 -47
- package/lib/commonjs/extensions/cellpack/state.js +0 -397
- package/lib/commonjs/extensions/cellpack/util.js +0 -181
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +0 -121
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +0 -178
- package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +0 -160
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +0 -159
- package/lib/commonjs/extensions/dnatco/confal-pyramids/types.js +0 -27
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +0 -234
- package/lib/commonjs/extensions/dnatco/index.js +0 -12
- package/lib/commonjs/extensions/g3d/data.js +0 -71
- package/lib/commonjs/extensions/g3d/format.js +0 -232
- package/lib/commonjs/extensions/g3d/model.js +0 -215
- package/lib/commonjs/extensions/geo-export/controls.js +0 -109
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +0 -323
- package/lib/commonjs/extensions/geo-export/index.js +0 -36
- package/lib/commonjs/extensions/geo-export/mesh-exporter.js +0 -457
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +0 -212
- package/lib/commonjs/extensions/geo-export/render-object-exporter.js +0 -8
- package/lib/commonjs/extensions/geo-export/stl-exporter.js +0 -131
- package/lib/commonjs/extensions/geo-export/ui.js +0 -116
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +0 -222
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +0 -236
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +0 -125
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +0 -111
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +0 -130
- package/lib/commonjs/extensions/model-export/export.js +0 -129
- package/lib/commonjs/extensions/model-export/index.js +0 -36
- package/lib/commonjs/extensions/model-export/ui.js +0 -77
- package/lib/commonjs/extensions/mp4-export/controls.js +0 -142
- package/lib/commonjs/extensions/mp4-export/encoder.js +0 -119
- package/lib/commonjs/extensions/mp4-export/index.js +0 -36
- package/lib/commonjs/extensions/mp4-export/ui.js +0 -94
- package/lib/commonjs/extensions/pdbe/index.js +0 -15
- package/lib/commonjs/extensions/pdbe/preferred-assembly.js +0 -98
- package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +0 -128
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +0 -75
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +0 -113
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +0 -288
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +0 -255
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +0 -101
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +0 -220
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +0 -363
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +0 -215
- package/lib/commonjs/extensions/rcsb/graphql/symmetry.gql.d.ts +0 -1
- package/lib/commonjs/extensions/rcsb/graphql/symmetry.gql.js +0 -5
- package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +0 -12874
- package/lib/commonjs/extensions/rcsb/graphql/types.js +0 -3
- package/lib/commonjs/extensions/rcsb/index.js +0 -13
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +0 -421
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +0 -79
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +0 -110
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +0 -67
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +0 -490
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +0 -243
- package/lib/commonjs/mol-canvas3d/camera/stereo.js +0 -129
- package/lib/commonjs/mol-canvas3d/camera/transition.js +0 -103
- package/lib/commonjs/mol-canvas3d/camera/util.d.ts +0 -31
- package/lib/commonjs/mol-canvas3d/camera/util.js +0 -94
- package/lib/commonjs/mol-canvas3d/camera.js +0 -334
- package/lib/commonjs/mol-canvas3d/controls/object.js +0 -49
- package/lib/commonjs/mol-canvas3d/controls/trackball.js +0 -426
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +0 -157
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +0 -217
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +0 -184
- package/lib/commonjs/mol-canvas3d/helper/helper.js +0 -33
- package/lib/commonjs/mol-canvas3d/passes/fxaa.js +0 -94
- package/lib/commonjs/mol-canvas3d/passes/marking.js +0 -131
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +0 -167
- package/lib/commonjs/mol-canvas3d/passes/wboit.d.ts +0 -23
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +0 -115
- package/lib/commonjs/mol-canvas3d/util.d.ts +0 -10
- package/lib/commonjs/mol-canvas3d/util.js +0 -70
- package/lib/commonjs/mol-data/db/column-helpers.d.ts +0 -19
- package/lib/commonjs/mol-data/db/column-helpers.js +0 -44
- package/lib/commonjs/mol-data/db/column.d.ts +0 -135
- package/lib/commonjs/mol-data/db/column.js +0 -425
- package/lib/commonjs/mol-data/db/database.d.ts +0 -25
- package/lib/commonjs/mol-data/db/database.js +0 -40
- package/lib/commonjs/mol-data/db/table.d.ts +0 -57
- package/lib/commonjs/mol-data/db/table.js +0 -302
- package/lib/commonjs/mol-data/db.d.ts +0 -14
- package/lib/commonjs/mol-data/db.js +0 -19
- package/lib/commonjs/mol-data/generic/hash-set.d.ts +0 -12
- package/lib/commonjs/mol-data/generic/hash-set.js +0 -52
- package/lib/commonjs/mol-data/generic/linked-list.d.ts +0 -26
- package/lib/commonjs/mol-data/generic/linked-list.js +0 -95
- package/lib/commonjs/mol-data/generic/unique-array.d.ts +0 -15
- package/lib/commonjs/mol-data/generic/unique-array.js +0 -31
- package/lib/commonjs/mol-data/generic.d.ts +0 -8
- package/lib/commonjs/mol-data/generic.js +0 -12
- package/lib/commonjs/mol-data/index.d.ts +0 -11
- package/lib/commonjs/mol-data/index.js +0 -20
- package/lib/commonjs/mol-data/int/impl/interval.d.ts +0 -30
- package/lib/commonjs/mol-data/int/impl/interval.js +0 -84
- package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +0 -40
- package/lib/commonjs/mol-data/int/impl/ordered-set.js +0 -423
- package/lib/commonjs/mol-data/int/impl/segmentation.d.ts +0 -41
- package/lib/commonjs/mol-data/int/impl/segmentation.js +0 -109
- package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +0 -45
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +0 -477
- package/lib/commonjs/mol-data/int/interval.d.ts +0 -53
- package/lib/commonjs/mol-data/int/interval.js +0 -56
- package/lib/commonjs/mol-data/int/linked-index.d.ts +0 -13
- package/lib/commonjs/mol-data/int/linked-index.js +0 -48
- package/lib/commonjs/mol-data/int/map.d.ts +0 -25
- package/lib/commonjs/mol-data/int/map.js +0 -50
- package/lib/commonjs/mol-data/int/ordered-set.d.ts +0 -55
- package/lib/commonjs/mol-data/int/ordered-set.js +0 -80
- package/lib/commonjs/mol-data/int/segmentation.d.ts +0 -32
- package/lib/commonjs/mol-data/int/segmentation.js +0 -22
- package/lib/commonjs/mol-data/int/sorted-array.d.ts +0 -49
- package/lib/commonjs/mol-data/int/sorted-array.js +0 -52
- package/lib/commonjs/mol-data/int/sorted-ranges.d.ts +0 -42
- package/lib/commonjs/mol-data/int/sorted-ranges.js +0 -125
- package/lib/commonjs/mol-data/int/tuple.d.ts +0 -28
- package/lib/commonjs/mol-data/int/tuple.js +0 -86
- package/lib/commonjs/mol-data/int.d.ts +0 -14
- package/lib/commonjs/mol-data/int.js +0 -25
- package/lib/commonjs/mol-data/iterator.d.ts +0 -25
- package/lib/commonjs/mol-data/iterator.js +0 -113
- package/lib/commonjs/mol-data/util/array.d.ts +0 -19
- package/lib/commonjs/mol-data/util/array.js +0 -56
- package/lib/commonjs/mol-data/util/buckets.d.ts +0 -16
- package/lib/commonjs/mol-data/util/buckets.js +0 -81
- package/lib/commonjs/mol-data/util/chunked-array.d.ts +0 -49
- package/lib/commonjs/mol-data/util/chunked-array.js +0 -175
- package/lib/commonjs/mol-data/util/combination.d.ts +0 -17
- package/lib/commonjs/mol-data/util/combination.js +0 -61
- package/lib/commonjs/mol-data/util/equivalence-classes.d.ts +0 -16
- package/lib/commonjs/mol-data/util/equivalence-classes.js +0 -52
- package/lib/commonjs/mol-data/util/grouping.d.ts +0 -23
- package/lib/commonjs/mol-data/util/grouping.js +0 -53
- package/lib/commonjs/mol-data/util/hash-functions.d.ts +0 -26
- package/lib/commonjs/mol-data/util/hash-functions.js +0 -96
- package/lib/commonjs/mol-data/util/interval-iterator.d.ts +0 -19
- package/lib/commonjs/mol-data/util/interval-iterator.js +0 -45
- package/lib/commonjs/mol-data/util/sort.d.ts +0 -12
- package/lib/commonjs/mol-data/util/sort.js +0 -164
- package/lib/commonjs/mol-data/util.d.ts +0 -12
- package/lib/commonjs/mol-data/util.js +0 -16
- package/lib/commonjs/mol-geo/geometry/base.js +0 -152
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +0 -55
- package/lib/commonjs/mol-geo/geometry/color-data.js +0 -235
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders-builder.js +0 -114
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +0 -197
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +0 -220
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.d.ts +0 -15
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +0 -61
- package/lib/commonjs/mol-geo/geometry/geometry.js +0 -89
- package/lib/commonjs/mol-geo/geometry/image/image.js +0 -176
- package/lib/commonjs/mol-geo/geometry/lines/lines-builder.js +0 -110
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +0 -195
- package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -24
- package/lib/commonjs/mol-geo/geometry/marker-data.js +0 -103
- package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +0 -32
- package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +0 -100
- package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +0 -119
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +0 -24
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +0 -85
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +0 -187
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +0 -30
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +0 -175
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +0 -325
- package/lib/commonjs/mol-geo/geometry/mesh/laplacian-smoothing.d.ts +0 -5
- package/lib/commonjs/mol-geo/geometry/mesh/laplacian-smoothing.js +0 -75
- package/lib/commonjs/mol-geo/geometry/mesh/mesh-builder.js +0 -154
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +0 -638
- package/lib/commonjs/mol-geo/geometry/overpaint-data.d.ts +0 -23
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js +0 -68
- package/lib/commonjs/mol-geo/geometry/picking.d.ts +0 -13
- package/lib/commonjs/mol-geo/geometry/picking.js +0 -16
- package/lib/commonjs/mol-geo/geometry/points/points-builder.js +0 -35
- package/lib/commonjs/mol-geo/geometry/points/points.js +0 -175
- package/lib/commonjs/mol-geo/geometry/size-data.js +0 -123
- package/lib/commonjs/mol-geo/geometry/spheres/spheres-builder.js +0 -58
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +0 -180
- package/lib/commonjs/mol-geo/geometry/substance-data.js +0 -68
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +0 -124
- package/lib/commonjs/mol-geo/geometry/text/text-builder.js +0 -284
- package/lib/commonjs/mol-geo/geometry/text/text.js +0 -222
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +0 -70
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +0 -432
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +0 -145
- package/lib/commonjs/mol-geo/geometry/transform-data.d.ts +0 -32
- package/lib/commonjs/mol-geo/geometry/transform-data.js +0 -87
- package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +0 -24
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +0 -76
- package/lib/commonjs/mol-geo/primitive/box.d.ts +0 -10
- package/lib/commonjs/mol-geo/primitive/box.js +0 -94
- package/lib/commonjs/mol-geo/primitive/cage.d.ts +0 -14
- package/lib/commonjs/mol-geo/primitive/cage.js +0 -33
- package/lib/commonjs/mol-geo/primitive/circle.d.ts +0 -14
- package/lib/commonjs/mol-geo/primitive/circle.js +0 -69
- package/lib/commonjs/mol-geo/primitive/cylinder.d.ts +0 -19
- package/lib/commonjs/mol-geo/primitive/cylinder.js +0 -129
- package/lib/commonjs/mol-geo/primitive/dodecahedron.d.ts +0 -12
- package/lib/commonjs/mol-geo/primitive/dodecahedron.js +0 -67
- package/lib/commonjs/mol-geo/primitive/icosahedron.d.ts +0 -9
- package/lib/commonjs/mol-geo/primitive/icosahedron.js +0 -40
- package/lib/commonjs/mol-geo/primitive/octahedron.d.ts +0 -13
- package/lib/commonjs/mol-geo/primitive/octahedron.js +0 -50
- package/lib/commonjs/mol-geo/primitive/plane.d.ts +0 -9
- package/lib/commonjs/mol-geo/primitive/plane.js +0 -39
- package/lib/commonjs/mol-geo/primitive/polygon.d.ts +0 -10
- package/lib/commonjs/mol-geo/primitive/polygon.js +0 -29
- package/lib/commonjs/mol-geo/primitive/polyhedron.d.ts +0 -12
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +0 -107
- package/lib/commonjs/mol-geo/primitive/primitive.d.ts +0 -24
- package/lib/commonjs/mol-geo/primitive/primitive.js +0 -97
- package/lib/commonjs/mol-geo/primitive/prism.d.ts +0 -29
- package/lib/commonjs/mol-geo/primitive/prism.js +0 -186
- package/lib/commonjs/mol-geo/primitive/pyramid.d.ts +0 -19
- package/lib/commonjs/mol-geo/primitive/pyramid.js +0 -126
- package/lib/commonjs/mol-geo/primitive/sphere.d.ts +0 -10
- package/lib/commonjs/mol-geo/primitive/sphere.js +0 -22
- package/lib/commonjs/mol-geo/primitive/spiked-ball.d.ts +0 -11
- package/lib/commonjs/mol-geo/primitive/spiked-ball.js +0 -61
- package/lib/commonjs/mol-geo/primitive/star.d.ts +0 -14
- package/lib/commonjs/mol-geo/primitive/star.js +0 -49
- package/lib/commonjs/mol-geo/primitive/tetrahedron.d.ts +0 -11
- package/lib/commonjs/mol-geo/primitive/tetrahedron.js +0 -33
- package/lib/commonjs/mol-geo/primitive/torus.d.ts +0 -15
- package/lib/commonjs/mol-geo/primitive/torus.js +0 -64
- package/lib/commonjs/mol-geo/primitive/wedge.d.ts +0 -13
- package/lib/commonjs/mol-geo/primitive/wedge.js +0 -56
- package/lib/commonjs/mol-geo/util/location-iterator.js +0 -91
- package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +0 -285
- package/lib/commonjs/mol-geo/util/marching-cubes/builder.js +0 -100
- package/lib/commonjs/mol-geo/util/marching-cubes/tables.d.ts +0 -50
- package/lib/commonjs/mol-geo/util/marching-cubes/tables.js +0 -432
- package/lib/commonjs/mol-geo/util.d.ts +0 -36
- package/lib/commonjs/mol-geo/util.js +0 -137
- package/lib/commonjs/mol-gl/commit-queue.js +0 -61
- package/lib/commonjs/mol-gl/compute/grid3d.d.ts +0 -24
- package/lib/commonjs/mol-gl/compute/grid3d.js +0 -188
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.d.ts +0 -16
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +0 -158
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.d.ts +0 -8
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +0 -79
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.d.ts +0 -9
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +0 -84
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +0 -30
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +0 -156
- package/lib/commonjs/mol-gl/compute/marching-cubes/tables.d.ts +0 -8
- package/lib/commonjs/mol-gl/compute/marching-cubes/tables.js +0 -42
- package/lib/commonjs/mol-gl/compute/util.d.ts +0 -39
- package/lib/commonjs/mol-gl/compute/util.js +0 -113
- package/lib/commonjs/mol-gl/object3d.d.ts +0 -16
- package/lib/commonjs/mol-gl/object3d.js +0 -28
- package/lib/commonjs/mol-gl/render-object.js +0 -41
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +0 -99
- package/lib/commonjs/mol-gl/renderable/cylinders.js +0 -26
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +0 -104
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +0 -30
- package/lib/commonjs/mol-gl/renderable/image.js +0 -27
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +0 -94
- package/lib/commonjs/mol-gl/renderable/lines.js +0 -26
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +0 -93
- package/lib/commonjs/mol-gl/renderable/mesh.js +0 -26
- package/lib/commonjs/mol-gl/renderable/points.d.ts +0 -90
- package/lib/commonjs/mol-gl/renderable/points.js +0 -26
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +0 -295
- package/lib/commonjs/mol-gl/renderable/schema.js +0 -203
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +0 -96
- package/lib/commonjs/mol-gl/renderable/spheres.js +0 -26
- package/lib/commonjs/mol-gl/renderable/text.d.ts +0 -101
- package/lib/commonjs/mol-gl/renderable/text.js +0 -26
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +0 -93
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +0 -26
- package/lib/commonjs/mol-gl/renderable/util.d.ts +0 -41
- package/lib/commonjs/mol-gl/renderable/util.js +0 -181
- package/lib/commonjs/mol-gl/renderable.d.ts +0 -38
- package/lib/commonjs/mol-gl/renderable.js +0 -41
- package/lib/commonjs/mol-gl/scene.js +0 -226
- package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +0 -9
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +0 -13
- package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +0 -11
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +0 -10
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +0 -9
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +0 -13
- package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +0 -10
- package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +0 -10
- package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +0 -10
- package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +0 -10
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +0 -11
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +0 -11
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +0 -11
- package/lib/commonjs/mol-gl/shader/compose.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/compose.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +0 -10
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/copy.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/copy.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/cylinders.vert.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/cylinders.vert.js +0 -10
- package/lib/commonjs/mol-gl/shader/depth-merge.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +0 -11
- package/lib/commonjs/mol-gl/shader/direct-volume.vert.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +0 -11
- package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/fxaa.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/fxaa.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +0 -11
- package/lib/commonjs/mol-gl/shader/gaussian-density.vert.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +0 -11
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/image.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/image.vert.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/image.vert.js +0 -10
- package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/lines.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +0 -8
- package/lib/commonjs/mol-gl/shader/lines.vert.js +0 -12
- package/lib/commonjs/mol-gl/shader/marching-cubes/active-voxels.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/active-voxels.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/marking/edge.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/marking/edge.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/marking/overlay.frag.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/marking/overlay.frag.js +0 -5
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +0 -10
- package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/outlines.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/points.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/points.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/points.vert.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/points.vert.js +0 -10
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +0 -11
- package/lib/commonjs/mol-gl/shader/quad.vert.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/quad.vert.js +0 -10
- package/lib/commonjs/mol-gl/shader/smaa/blend.frag.d.ts +0 -9
- package/lib/commonjs/mol-gl/shader/smaa/blend.frag.js +0 -13
- package/lib/commonjs/mol-gl/shader/smaa/blend.vert.d.ts +0 -9
- package/lib/commonjs/mol-gl/shader/smaa/blend.vert.js +0 -13
- package/lib/commonjs/mol-gl/shader/smaa/edges.frag.d.ts +0 -9
- package/lib/commonjs/mol-gl/shader/smaa/edges.frag.js +0 -13
- package/lib/commonjs/mol-gl/shader/smaa/edges.vert.d.ts +0 -9
- package/lib/commonjs/mol-gl/shader/smaa/edges.vert.js +0 -13
- package/lib/commonjs/mol-gl/shader/smaa/weights.frag.d.ts +0 -9
- package/lib/commonjs/mol-gl/shader/smaa/weights.frag.js +0 -13
- package/lib/commonjs/mol-gl/shader/smaa/weights.vert.d.ts +0 -9
- package/lib/commonjs/mol-gl/shader/smaa/weights.vert.js +0 -13
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/spheres.vert.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/spheres.vert.js +0 -10
- package/lib/commonjs/mol-gl/shader/ssao-blur.frag.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/ssao-blur.frag.js +0 -11
- package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +0 -7
- package/lib/commonjs/mol-gl/shader/ssao.frag.js +0 -11
- package/lib/commonjs/mol-gl/shader/text.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/text.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader/text.vert.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/text.vert.js +0 -10
- package/lib/commonjs/mol-gl/shader/util/grid3d-template.frag.d.ts +0 -6
- package/lib/commonjs/mol-gl/shader/util/grid3d-template.frag.js +0 -10
- package/lib/commonjs/mol-gl/shader-code.d.ts +0 -47
- package/lib/commonjs/mol-gl/shader-code.js +0 -281
- package/lib/commonjs/mol-gl/webgl/buffer.d.ts +0 -67
- package/lib/commonjs/mol-gl/webgl/buffer.js +0 -180
- package/lib/commonjs/mol-gl/webgl/compat.d.ts +0 -96
- package/lib/commonjs/mol-gl/webgl/compat.js +0 -343
- package/lib/commonjs/mol-gl/webgl/context.d.ts +0 -84
- package/lib/commonjs/mol-gl/webgl/context.js +0 -309
- package/lib/commonjs/mol-gl/webgl/extensions.d.ts +0 -25
- package/lib/commonjs/mol-gl/webgl/extensions.js +0 -102
- package/lib/commonjs/mol-gl/webgl/framebuffer.d.ts +0 -15
- package/lib/commonjs/mol-gl/webgl/framebuffer.js +0 -71
- package/lib/commonjs/mol-gl/webgl/program.d.ts +0 -32
- package/lib/commonjs/mol-gl/webgl/program.js +0 -196
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +0 -54
- package/lib/commonjs/mol-gl/webgl/render-item.js +0 -335
- package/lib/commonjs/mol-gl/webgl/render-target.d.ts +0 -23
- package/lib/commonjs/mol-gl/webgl/render-target.js +0 -89
- package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +0 -20
- package/lib/commonjs/mol-gl/webgl/renderbuffer.js +0 -83
- package/lib/commonjs/mol-gl/webgl/resources.d.ts +0 -38
- package/lib/commonjs/mol-gl/webgl/resources.js +0 -128
- package/lib/commonjs/mol-gl/webgl/shader.d.ts +0 -19
- package/lib/commonjs/mol-gl/webgl/shader.js +0 -50
- package/lib/commonjs/mol-gl/webgl/state.d.ts +0 -60
- package/lib/commonjs/mol-gl/webgl/state.js +0 -147
- package/lib/commonjs/mol-gl/webgl/texture.d.ts +0 -75
- package/lib/commonjs/mol-gl/webgl/texture.js +0 -398
- package/lib/commonjs/mol-gl/webgl/uniform.d.ts +0 -45
- package/lib/commonjs/mol-gl/webgl/uniform.js +0 -112
- package/lib/commonjs/mol-gl/webgl/vertex-array.d.ts +0 -17
- package/lib/commonjs/mol-gl/webgl/vertex-array.js +0 -69
- package/lib/commonjs/mol-io/common/ascii.d.ts +0 -6
- package/lib/commonjs/mol-io/common/ascii.js +0 -15
- package/lib/commonjs/mol-io/common/binary-cif/array-encoder.d.ts +0 -50
- package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +0 -396
- package/lib/commonjs/mol-io/common/binary-cif/classifier.d.ts +0 -8
- package/lib/commonjs/mol-io/common/binary-cif/classifier.js +0 -173
- package/lib/commonjs/mol-io/common/binary-cif/decoder.d.ts +0 -12
- package/lib/commonjs/mol-io/common/binary-cif/decoder.js +0 -180
- package/lib/commonjs/mol-io/common/binary-cif/encoding.d.ts +0 -96
- package/lib/commonjs/mol-io/common/binary-cif/encoding.js +0 -47
- package/lib/commonjs/mol-io/common/binary-cif.d.ts +0 -9
- package/lib/commonjs/mol-io/common/binary-cif.js +0 -15
- package/lib/commonjs/mol-io/common/binary.d.ts +0 -9
- package/lib/commonjs/mol-io/common/binary.js +0 -36
- package/lib/commonjs/mol-io/common/file-handle.d.ts +0 -43
- package/lib/commonjs/mol-io/common/file-handle.js +0 -55
- package/lib/commonjs/mol-io/common/msgpack/decode.d.ts +0 -1
- package/lib/commonjs/mol-io/common/msgpack/decode.js +0 -204
- package/lib/commonjs/mol-io/common/msgpack/encode.d.ts +0 -1
- package/lib/commonjs/mol-io/common/msgpack/encode.js +0 -290
- package/lib/commonjs/mol-io/common/simple-buffer.d.ts +0 -48
- package/lib/commonjs/mol-io/common/simple-buffer.js +0 -90
- package/lib/commonjs/mol-io/common/typed-array.d.ts +0 -30
- package/lib/commonjs/mol-io/common/typed-array.js +0 -83
- package/lib/commonjs/mol-io/common/utf8.d.ts +0 -10
- package/lib/commonjs/mol-io/common/utf8.js +0 -131
- package/lib/commonjs/mol-io/reader/ccp4/parser.d.ts +0 -19
- package/lib/commonjs/mol-io/reader/ccp4/parser.js +0 -193
- package/lib/commonjs/mol-io/reader/ccp4/schema.d.ts +0 -118
- package/lib/commonjs/mol-io/reader/ccp4/schema.js +0 -9
- package/lib/commonjs/mol-io/reader/cif/binary/field.d.ts +0 -9
- package/lib/commonjs/mol-io/reader/cif/binary/field.js +0 -54
- package/lib/commonjs/mol-io/reader/cif/binary/parser.d.ts +0 -9
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js +0 -73
- package/lib/commonjs/mol-io/reader/cif/data-model.d.ts +0 -85
- package/lib/commonjs/mol-io/reader/cif/data-model.js +0 -307
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +0 -491
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +0 -497
- package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts +0 -12
- package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.js +0 -18
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +0 -390
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +0 -398
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +0 -684
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +0 -750
- package/lib/commonjs/mol-io/reader/cif/schema/ddl.d.ts +0 -0
- package/lib/commonjs/mol-io/reader/cif/schema/ddl.js +0 -3
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +0 -52
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.js +0 -60
- package/lib/commonjs/mol-io/reader/cif/schema/dic.d.ts +0 -51
- package/lib/commonjs/mol-io/reader/cif/schema/dic.js +0 -63
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +0 -39
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +0 -28
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +0 -5036
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +0 -5046
- package/lib/commonjs/mol-io/reader/cif/schema.d.ts +0 -16
- package/lib/commonjs/mol-io/reader/cif/schema.js +0 -211
- package/lib/commonjs/mol-io/reader/cif/text/parser.d.ts +0 -27
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +0 -732
- package/lib/commonjs/mol-io/reader/cif.d.ts +0 -32
- package/lib/commonjs/mol-io/reader/cif.js +0 -36
- package/lib/commonjs/mol-io/reader/common/binary/column.d.ts +0 -5
- package/lib/commonjs/mol-io/reader/common/binary/column.js +0 -7
- package/lib/commonjs/mol-io/reader/common/text/column/fixed.d.ts +0 -9
- package/lib/commonjs/mol-io/reader/common/text/column/fixed.js +0 -52
- package/lib/commonjs/mol-io/reader/common/text/column/token.d.ts +0 -12
- package/lib/commonjs/mol-io/reader/common/text/column/token.js +0 -63
- package/lib/commonjs/mol-io/reader/common/text/number-parser.d.ts +0 -26
- package/lib/commonjs/mol-io/reader/common/text/number-parser.js +0 -163
- package/lib/commonjs/mol-io/reader/common/text/tokenizer.d.ts +0 -66
- package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +0 -307
- package/lib/commonjs/mol-io/reader/csv/data-model.d.ts +0 -20
- package/lib/commonjs/mol-io/reader/csv/data-model.js +0 -20
- package/lib/commonjs/mol-io/reader/csv/field.d.ts +0 -7
- package/lib/commonjs/mol-io/reader/csv/field.js +0 -11
- package/lib/commonjs/mol-io/reader/csv/parser.d.ts +0 -16
- package/lib/commonjs/mol-io/reader/csv/parser.js +0 -259
- package/lib/commonjs/mol-io/reader/csv/schema.d.ts +0 -6
- package/lib/commonjs/mol-io/reader/csv/schema.js +0 -11
- package/lib/commonjs/mol-io/reader/cube/parser.d.ts +0 -41
- package/lib/commonjs/mol-io/reader/cube/parser.js +0 -114
- package/lib/commonjs/mol-io/reader/dcd/parser.d.ts +0 -30
- package/lib/commonjs/mol-io/reader/dcd/parser.js +0 -170
- package/lib/commonjs/mol-io/reader/dsn6/parser.d.ts +0 -22
- package/lib/commonjs/mol-io/reader/dsn6/parser.js +0 -188
- package/lib/commonjs/mol-io/reader/dsn6/schema.d.ts +0 -43
- package/lib/commonjs/mol-io/reader/dsn6/schema.js +0 -8
- package/lib/commonjs/mol-io/reader/dx/parser.d.ts +0 -24
- package/lib/commonjs/mol-io/reader/dx/parser.js +0 -129
- package/lib/commonjs/mol-io/reader/gro/parser.d.ts +0 -10
- package/lib/commonjs/mol-io/reader/gro/parser.js +0 -173
- package/lib/commonjs/mol-io/reader/mol/parser.d.ts +0 -53
- package/lib/commonjs/mol-io/reader/mol/parser.js +0 -204
- package/lib/commonjs/mol-io/reader/mol2/parser.d.ts +0 -10
- package/lib/commonjs/mol-io/reader/mol2/parser.js +0 -322
- package/lib/commonjs/mol-io/reader/mol2/schema.d.ts +0 -59
- package/lib/commonjs/mol-io/reader/mol2/schema.js +0 -8
- package/lib/commonjs/mol-io/reader/obj/parser.js +0 -35
- package/lib/commonjs/mol-io/reader/pdb/parser.d.ts +0 -10
- package/lib/commonjs/mol-io/reader/pdb/parser.js +0 -35
- package/lib/commonjs/mol-io/reader/pdb/schema.d.ts +0 -12
- package/lib/commonjs/mol-io/reader/pdb/schema.js +0 -9
- package/lib/commonjs/mol-io/reader/ply/parser.d.ts +0 -9
- package/lib/commonjs/mol-io/reader/ply/parser.js +0 -253
- package/lib/commonjs/mol-io/reader/ply/schema.d.ts +0 -52
- package/lib/commonjs/mol-io/reader/ply/schema.js +0 -50
- package/lib/commonjs/mol-io/reader/psf/parser.d.ts +0 -29
- package/lib/commonjs/mol-io/reader/psf/parser.js +0 -282
- package/lib/commonjs/mol-io/reader/result.d.ts +0 -19
- package/lib/commonjs/mol-io/reader/result.js +0 -48
- package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.d.ts +0 -15
- package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.js +0 -100
- package/lib/commonjs/mol-io/reader/sdf/parser.d.ts +0 -24
- package/lib/commonjs/mol-io/reader/sdf/parser.js +0 -111
- package/lib/commonjs/mol-io/reader/xtc/parser.d.ts +0 -23
- package/lib/commonjs/mol-io/reader/xtc/parser.js +0 -377
- package/lib/commonjs/mol-io/reader/xyz/parser.d.ts +0 -19
- package/lib/commonjs/mol-io/reader/xyz/parser.js +0 -61
- package/lib/commonjs/mol-io/utils/short-string-pool.d.ts +0 -18
- package/lib/commonjs/mol-io/utils/short-string-pool.js +0 -26
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.d.ts +0 -33
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +0 -191
- package/lib/commonjs/mol-io/writer/cif/encoder/text.d.ts +0 -27
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +0 -257
- package/lib/commonjs/mol-io/writer/cif/encoder/util.d.ts +0 -19
- package/lib/commonjs/mol-io/writer/cif/encoder/util.js +0 -36
- package/lib/commonjs/mol-io/writer/cif/encoder.d.ts +0 -108
- package/lib/commonjs/mol-io/writer/cif/encoder.js +0 -270
- package/lib/commonjs/mol-io/writer/cif.d.ts +0 -46
- package/lib/commonjs/mol-io/writer/cif.js +0 -98
- package/lib/commonjs/mol-io/writer/encoder.d.ts +0 -12
- package/lib/commonjs/mol-io/writer/encoder.js +0 -8
- package/lib/commonjs/mol-io/writer/ligand-encoder.js +0 -127
- package/lib/commonjs/mol-io/writer/mol/encoder.js +0 -125
- package/lib/commonjs/mol-io/writer/mol.js +0 -18
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +0 -328
- package/lib/commonjs/mol-io/writer/mol2.js +0 -18
- package/lib/commonjs/mol-io/writer/sdf.js +0 -18
- package/lib/commonjs/mol-io/writer/writer.d.ts +0 -12
- package/lib/commonjs/mol-io/writer/writer.js +0 -8
- package/lib/commonjs/mol-math/approx.d.ts +0 -37
- package/lib/commonjs/mol-math/approx.js +0 -211
- package/lib/commonjs/mol-math/easing.d.ts +0 -25
- package/lib/commonjs/mol-math/easing.js +0 -91
- package/lib/commonjs/mol-math/geometry/boundary-helper.d.ts +0 -31
- package/lib/commonjs/mol-math/geometry/boundary-helper.js +0 -150
- package/lib/commonjs/mol-math/geometry/boundary.d.ts +0 -13
- package/lib/commonjs/mol-math/geometry/boundary.js +0 -54
- package/lib/commonjs/mol-math/geometry/centroid-helper.d.ts +0 -31
- package/lib/commonjs/mol-math/geometry/centroid-helper.js +0 -114
- package/lib/commonjs/mol-math/geometry/common.d.ts +0 -41
- package/lib/commonjs/mol-math/geometry/common.js +0 -25
- package/lib/commonjs/mol-math/geometry/distance-transform.d.ts +0 -10
- package/lib/commonjs/mol-math/geometry/distance-transform.js +0 -57
- package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +0 -10
- package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.js +0 -139
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.d.ts +0 -15
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +0 -390
- package/lib/commonjs/mol-math/geometry/gaussian-density.d.ts +0 -28
- package/lib/commonjs/mol-math/geometry/gaussian-density.js +0 -52
- package/lib/commonjs/mol-math/geometry/lookup3d/common.d.ts +0 -29
- package/lib/commonjs/mol-math/geometry/lookup3d/common.js +0 -35
- package/lib/commonjs/mol-math/geometry/lookup3d/grid.d.ts +0 -19
- package/lib/commonjs/mol-math/geometry/lookup3d/grid.js +0 -199
- package/lib/commonjs/mol-math/geometry/molecular-surface.js +0 -357
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.d.ts +0 -28
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +0 -71
- package/lib/commonjs/mol-math/geometry/primitives/box3d.d.ts +0 -40
- package/lib/commonjs/mol-math/geometry/primitives/box3d.js +0 -131
- package/lib/commonjs/mol-math/geometry/primitives/sphere3d.d.ts +0 -60
- package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +0 -256
- package/lib/commonjs/mol-math/geometry/spacegroup/cell.d.ts +0 -17
- package/lib/commonjs/mol-math/geometry/spacegroup/cell.js +0 -40
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.d.ts +0 -50
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js +0 -169
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.d.ts +0 -371
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js +0 -1532
- package/lib/commonjs/mol-math/geometry/symmetry-operator.d.ts +0 -76
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +0 -226
- package/lib/commonjs/mol-math/geometry.d.ts +0 -14
- package/lib/commonjs/mol-math/geometry.js +0 -18
- package/lib/commonjs/mol-math/graph/int-adjacency-graph.d.ts +0 -136
- package/lib/commonjs/mol-math/graph/int-adjacency-graph.js +0 -367
- package/lib/commonjs/mol-math/graph/inter-unit-graph.d.ts +0 -71
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js +0 -148
- package/lib/commonjs/mol-math/graph.d.ts +0 -6
- package/lib/commonjs/mol-math/graph.js +0 -10
- package/lib/commonjs/mol-math/histogram.d.ts +0 -15
- package/lib/commonjs/mol-math/histogram.js +0 -35
- package/lib/commonjs/mol-math/interpolate.d.ts +0 -18
- package/lib/commonjs/mol-math/interpolate.js +0 -72
- package/lib/commonjs/mol-math/linear-algebra/3d/common.d.ts +0 -8
- package/lib/commonjs/mol-math/linear-algebra/3d/common.js +0 -26
- package/lib/commonjs/mol-math/linear-algebra/3d/mat3.d.ts +0 -79
- package/lib/commonjs/mol-math/linear-algebra/3d/mat3.js +0 -439
- package/lib/commonjs/mol-math/linear-algebra/3d/mat4.d.ts +0 -150
- package/lib/commonjs/mol-math/linear-algebra/3d/mat4.js +0 -1032
- package/lib/commonjs/mol-math/linear-algebra/3d/minimize-rmsd.d.ts +0 -33
- package/lib/commonjs/mol-math/linear-algebra/3d/minimize-rmsd.js +0 -136
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +0 -89
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +0 -435
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.d.ts +0 -50
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js +0 -159
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +0 -183
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +0 -583
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.d.ts +0 -63
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js +0 -221
- package/lib/commonjs/mol-math/linear-algebra/3d.d.ts +0 -15
- package/lib/commonjs/mol-math/linear-algebra/3d.js +0 -35
- package/lib/commonjs/mol-math/linear-algebra/matrix/evd.d.ts +0 -20
- package/lib/commonjs/mol-math/linear-algebra/matrix/evd.js +0 -259
- package/lib/commonjs/mol-math/linear-algebra/matrix/matrix.d.ts +0 -36
- package/lib/commonjs/mol-math/linear-algebra/matrix/matrix.js +0 -111
- package/lib/commonjs/mol-math/linear-algebra/matrix/principal-axes.d.ts +0 -21
- package/lib/commonjs/mol-math/linear-algebra/matrix/principal-axes.js +0 -134
- package/lib/commonjs/mol-math/linear-algebra/matrix/svd.d.ts +0 -11
- package/lib/commonjs/mol-math/linear-algebra/matrix/svd.js +0 -281
- package/lib/commonjs/mol-math/linear-algebra/tensor.d.ts +0 -49
- package/lib/commonjs/mol-math/linear-algebra/tensor.js +0 -325
- package/lib/commonjs/mol-math/linear-algebra.d.ts +0 -7
- package/lib/commonjs/mol-math/linear-algebra.js +0 -11
- package/lib/commonjs/mol-math/misc.d.ts +0 -16
- package/lib/commonjs/mol-math/misc.js +0 -69
- package/lib/commonjs/mol-model/custom-property.js +0 -82
- package/lib/commonjs/mol-model/location.js +0 -23
- package/lib/commonjs/mol-model/sequence/alignment/alignment.d.ts +0 -17
- package/lib/commonjs/mol-model/sequence/alignment/alignment.js +0 -181
- package/lib/commonjs/mol-model/sequence/alignment/sequence.js +0 -97
- package/lib/commonjs/mol-model/sequence/alignment/substitution-matrix.d.ts +0 -23
- package/lib/commonjs/mol-model/sequence/alignment/substitution-matrix.js +0 -75
- package/lib/commonjs/mol-model/sequence/alignment.d.ts +0 -0
- package/lib/commonjs/mol-model/sequence/alignment.js +0 -2
- package/lib/commonjs/mol-model/sequence/constants.d.ts +0 -10
- package/lib/commonjs/mol-model/sequence/constants.js +0 -73
- package/lib/commonjs/mol-model/sequence/sequence.d.ts +0 -43
- package/lib/commonjs/mol-model/sequence/sequence.js +0 -162
- package/lib/commonjs/mol-model/sequence.d.ts +0 -6
- package/lib/commonjs/mol-model/sequence.js +0 -10
- package/lib/commonjs/mol-model/shape/provider.js +0 -8
- package/lib/commonjs/mol-model/shape/shape.js +0 -216
- package/lib/commonjs/mol-model/shape.js +0 -10
- package/lib/commonjs/mol-model/structure/coordinates/coordinates.d.ts +0 -62
- package/lib/commonjs/mol-model/structure/coordinates/coordinates.js +0 -124
- package/lib/commonjs/mol-model/structure/coordinates.d.ts +0 -6
- package/lib/commonjs/mol-model/structure/coordinates.js +0 -10
- package/lib/commonjs/mol-model/structure/export/categories/atom_site.js +0 -160
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +0 -89
- package/lib/commonjs/mol-model/structure/export/categories/misc.js +0 -63
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +0 -102
- package/lib/commonjs/mol-model/structure/export/categories/sequence.js +0 -34
- package/lib/commonjs/mol-model/structure/export/categories/utils.js +0 -110
- package/lib/commonjs/mol-model/structure/export/mmcif.js +0 -247
- package/lib/commonjs/mol-model/structure/model/indexing.d.ts +0 -21
- package/lib/commonjs/mol-model/structure/model/indexing.js +0 -8
- package/lib/commonjs/mol-model/structure/model/model.js +0 -327
- package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.d.ts +0 -13
- package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js +0 -93
- package/lib/commonjs/mol-model/structure/model/properties/atomic/conformation.d.ts +0 -41
- package/lib/commonjs/mol-model/structure/model/properties/atomic/conformation.js +0 -9
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +0 -244
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +0 -110
- package/lib/commonjs/mol-model/structure/model/properties/atomic/measures.d.ts +0 -21
- package/lib/commonjs/mol-model/structure/model/properties/atomic/measures.js +0 -38
- package/lib/commonjs/mol-model/structure/model/properties/atomic/types.d.ts +0 -155
- package/lib/commonjs/mol-model/structure/model/properties/atomic/types.js +0 -70
- package/lib/commonjs/mol-model/structure/model/properties/atomic.d.ts +0 -8
- package/lib/commonjs/mol-model/structure/model/properties/atomic.js +0 -12
- package/lib/commonjs/mol-model/structure/model/properties/coarse/conformation.d.ts +0 -57
- package/lib/commonjs/mol-model/structure/model/properties/coarse/conformation.js +0 -9
- package/lib/commonjs/mol-model/structure/model/properties/common.d.ts +0 -30
- package/lib/commonjs/mol-model/structure/model/properties/common.js +0 -12
- package/lib/commonjs/mol-model/structure/model/properties/custom/indexed.js +0 -197
- package/lib/commonjs/mol-model/structure/model/properties/global-transform.js +0 -82
- package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.d.ts +0 -47
- package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.js +0 -13
- package/lib/commonjs/mol-model/structure/model/properties/symmetry.js +0 -69
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +0 -84
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +0 -10
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +0 -229
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-ranges.js +0 -117
- package/lib/commonjs/mol-model/structure/model/properties/utils/coarse-keys.js +0 -97
- package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js +0 -98
- package/lib/commonjs/mol-model/structure/model/types/ions.d.ts +0 -8
- package/lib/commonjs/mol-model/structure/model/types/ions.js +0 -12
- package/lib/commonjs/mol-model/structure/model/types/lipids.d.ts +0 -8
- package/lib/commonjs/mol-model/structure/model/types/lipids.js +0 -12
- package/lib/commonjs/mol-model/structure/model/types.d.ts +0 -261
- package/lib/commonjs/mol-model/structure/model/types.js +0 -620
- package/lib/commonjs/mol-model/structure/model/util.js +0 -52
- package/lib/commonjs/mol-model/structure/model.js +0 -20
- package/lib/commonjs/mol-model/structure/query/context.js +0 -135
- package/lib/commonjs/mol-model/structure/query/predicates.js +0 -120
- package/lib/commonjs/mol-model/structure/query/queries/combinators.js +0 -73
- package/lib/commonjs/mol-model/structure/query/queries/filters.js +0 -309
- package/lib/commonjs/mol-model/structure/query/queries/generators.js +0 -351
- package/lib/commonjs/mol-model/structure/query/queries/internal.js +0 -130
- package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +0 -614
- package/lib/commonjs/mol-model/structure/query/query.js +0 -18
- package/lib/commonjs/mol-model/structure/query/selection.js +0 -163
- package/lib/commonjs/mol-model/structure/query/utils/builders.js +0 -86
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.js +0 -126
- package/lib/commonjs/mol-model/structure/query/utils/structure-set.js +0 -138
- package/lib/commonjs/mol-model/structure/query.js +0 -29
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +0 -390
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +0 -64
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +0 -322
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/data.js +0 -19
- package/lib/commonjs/mol-model/structure/structure/element/bundle.js +0 -247
- package/lib/commonjs/mol-model/structure/structure/element/element.js +0 -15
- package/lib/commonjs/mol-model/structure/structure/element/location.js +0 -67
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +0 -721
- package/lib/commonjs/mol-model/structure/structure/element/stats.js +0 -359
- package/lib/commonjs/mol-model/structure/structure/element/util.js +0 -47
- package/lib/commonjs/mol-model/structure/structure/element.js +0 -13
- package/lib/commonjs/mol-model/structure/structure/properties.js +0 -177
- package/lib/commonjs/mol-model/structure/structure/structure.js +0 -1390
- package/lib/commonjs/mol-model/structure/structure/symmetry.js +0 -337
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/common.d.ts +0 -21
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/common.js +0 -122
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +0 -46
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/element-set-intra-bond-cache.js +0 -50
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +0 -199
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +0 -240
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +0 -224
- package/lib/commonjs/mol-model/structure/structure/unit/rings/compute.js +0 -337
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +0 -218
- package/lib/commonjs/mol-model/structure/structure/unit.js +0 -492
- package/lib/commonjs/mol-model/structure/structure/util/boundary.js +0 -50
- package/lib/commonjs/mol-model/structure/structure/util/lookup3d.js +0 -200
- package/lib/commonjs/mol-model/structure/structure/util/polymer.js +0 -123
- package/lib/commonjs/mol-model/structure/structure/util/principal-axes.js +0 -28
- package/lib/commonjs/mol-model/structure/structure/util/subset-builder.js +0 -115
- package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.js +0 -135
- package/lib/commonjs/mol-model/structure/structure/util/superposition.js +0 -91
- package/lib/commonjs/mol-model/structure/structure/util/unique-subset-builder.js +0 -100
- package/lib/commonjs/mol-model/structure/structure/util/unit-transforms.js +0 -73
- package/lib/commonjs/mol-model/structure/structure.js +0 -24
- package/lib/commonjs/mol-model/structure/topology/topology.d.ts +0 -24
- package/lib/commonjs/mol-model/structure/topology/topology.js +0 -24
- package/lib/commonjs/mol-model/structure/topology.d.ts +0 -6
- package/lib/commonjs/mol-model/structure/topology.js +0 -10
- package/lib/commonjs/mol-model/structure/trajectory.js +0 -22
- package/lib/commonjs/mol-model/structure/util.js +0 -60
- package/lib/commonjs/mol-model/structure.js +0 -16
- package/lib/commonjs/mol-model/volume/grid.d.ts +0 -41
- package/lib/commonjs/mol-model/volume/grid.js +0 -67
- package/lib/commonjs/mol-model-formats/format.d.ts +0 -11
- package/lib/commonjs/mol-model-formats/format.js +0 -9
- package/lib/commonjs/mol-model-formats/shape/ply.js +0 -295
- package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +0 -174
- package/lib/commonjs/mol-model-formats/structure/basic/coarse.js +0 -84
- package/lib/commonjs/mol-model-formats/structure/basic/entities.js +0 -137
- package/lib/commonjs/mol-model-formats/structure/basic/parser.js +0 -245
- package/lib/commonjs/mol-model-formats/structure/basic/properties.js +0 -132
- package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +0 -194
- package/lib/commonjs/mol-model-formats/structure/basic/schema.js +0 -45
- package/lib/commonjs/mol-model-formats/structure/basic/sequence.js +0 -40
- package/lib/commonjs/mol-model-formats/structure/basic/sort.d.ts +0 -13
- package/lib/commonjs/mol-model-formats/structure/basic/sort.js +0 -72
- package/lib/commonjs/mol-model-formats/structure/basic/util.d.ts +0 -8
- package/lib/commonjs/mol-model-formats/structure/basic/util.js +0 -22
- package/lib/commonjs/mol-model-formats/structure/cif-core.js +0 -258
- package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +0 -50
- package/lib/commonjs/mol-model-formats/structure/common/component.js +0 -185
- package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +0 -40
- package/lib/commonjs/mol-model-formats/structure/common/entity.js +0 -80
- package/lib/commonjs/mol-model-formats/structure/common/property.js +0 -66
- package/lib/commonjs/mol-model-formats/structure/common/util.d.ts +0 -6
- package/lib/commonjs/mol-model-formats/structure/common/util.js +0 -27
- package/lib/commonjs/mol-model-formats/structure/cube.js +0 -78
- package/lib/commonjs/mol-model-formats/structure/dcd.d.ts +0 -9
- package/lib/commonjs/mol-model-formats/structure/dcd.js +0 -67
- package/lib/commonjs/mol-model-formats/structure/gro.js +0 -126
- package/lib/commonjs/mol-model-formats/structure/mmcif.js +0 -93
- package/lib/commonjs/mol-model-formats/structure/mol.js +0 -104
- package/lib/commonjs/mol-model-formats/structure/mol2.js +0 -163
- package/lib/commonjs/mol-model-formats/structure/pdb/anisotropic.d.ts +0 -36
- package/lib/commonjs/mol-model-formats/structure/pdb/anisotropic.js +0 -130
- package/lib/commonjs/mol-model-formats/structure/pdb/assembly.d.ts +0 -10
- package/lib/commonjs/mol-model-formats/structure/pdb/assembly.js +0 -243
- package/lib/commonjs/mol-model-formats/structure/pdb/atom-site.d.ts +0 -35
- package/lib/commonjs/mol-model-formats/structure/pdb/atom-site.js +0 -145
- package/lib/commonjs/mol-model-formats/structure/pdb/conect.d.ts +0 -11
- package/lib/commonjs/mol-model-formats/structure/pdb/conect.js +0 -75
- package/lib/commonjs/mol-model-formats/structure/pdb/entity.d.ts +0 -9
- package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +0 -113
- package/lib/commonjs/mol-model-formats/structure/pdb/secondary-structure.d.ts +0 -9
- package/lib/commonjs/mol-model-formats/structure/pdb/secondary-structure.js +0 -205
- package/lib/commonjs/mol-model-formats/structure/pdb/to-cif.d.ts +0 -9
- package/lib/commonjs/mol-model-formats/structure/pdb/to-cif.js +0 -231
- package/lib/commonjs/mol-model-formats/structure/pdb.js +0 -71
- package/lib/commonjs/mol-model-formats/structure/property/anisotropic.js +0 -72
- package/lib/commonjs/mol-model-formats/structure/property/assembly.js +0 -126
- package/lib/commonjs/mol-model-formats/structure/property/atoms/chem_comp.js +0 -87
- package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +0 -117
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +0 -62
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +0 -167
- package/lib/commonjs/mol-model-formats/structure/property/partial-charge.js +0 -18
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +0 -190
- package/lib/commonjs/mol-model-formats/structure/property/symmetry.js +0 -77
- package/lib/commonjs/mol-model-formats/structure/psf.d.ts +0 -16
- package/lib/commonjs/mol-model-formats/structure/psf.js +0 -123
- package/lib/commonjs/mol-model-formats/structure/sdf.js +0 -27
- package/lib/commonjs/mol-model-formats/structure/util.d.ts +0 -8
- package/lib/commonjs/mol-model-formats/structure/util.js +0 -79
- package/lib/commonjs/mol-model-formats/structure/xtc.d.ts +0 -10
- package/lib/commonjs/mol-model-formats/structure/xtc.js +0 -48
- package/lib/commonjs/mol-model-formats/structure/xyz.js +0 -92
- package/lib/commonjs/mol-model-formats/volume/ccp4.js +0 -96
- package/lib/commonjs/mol-model-formats/volume/cube.js +0 -75
- package/lib/commonjs/mol-model-formats/volume/density-server.js +0 -61
- package/lib/commonjs/mol-model-formats/volume/dsn6.js +0 -67
- package/lib/commonjs/mol-model-formats/volume/dx.js +0 -58
- package/lib/commonjs/mol-model-props/common/custom-element-property.js +0 -110
- package/lib/commonjs/mol-model-props/common/custom-model-property.js +0 -110
- package/lib/commonjs/mol-model-props/common/custom-property.js +0 -70
- package/lib/commonjs/mol-model-props/common/custom-structure-property.js +0 -114
- package/lib/commonjs/mol-model-props/common/wrapper.js +0 -46
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/area.js +0 -101
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/common.js +0 -46
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +0 -148
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +0 -121
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area.js +0 -63
- package/lib/commonjs/mol-model-props/computed/chemistry/functional-group.js +0 -207
- package/lib/commonjs/mol-model-props/computed/chemistry/geometry.js +0 -121
- package/lib/commonjs/mol-model-props/computed/chemistry/util.js +0 -122
- package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +0 -326
- package/lib/commonjs/mol-model-props/computed/helix-orientation/helix-orientation.js +0 -111
- package/lib/commonjs/mol-model-props/computed/helix-orientation.js +0 -29
- package/lib/commonjs/mol-model-props/computed/interactions.js +0 -39
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/backbone-hbonds.js +0 -125
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bends.js +0 -60
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bridges.js +0 -74
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/common.js +0 -26
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/dihedral-angles.js +0 -51
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/helices.js +0 -64
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/ladders.js +0 -99
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/protein-info.js +0 -37
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/sheets.js +0 -58
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/trace-lookup.js +0 -23
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/turns.js +0 -40
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp.js +0 -212
- package/lib/commonjs/mol-model-props/computed/secondary-structure/zhang-skolnik.d.ts +0 -0
- package/lib/commonjs/mol-model-props/computed/secondary-structure/zhang-skolnik.js +0 -3
- package/lib/commonjs/mol-model-props/computed/secondary-structure.js +0 -119
- package/lib/commonjs/mol-model-props/computed/themes/accessible-surface-area.js +0 -82
- package/lib/commonjs/mol-model-props/computed/valence-model.js +0 -39
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/color.js +0 -68
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/format.js +0 -93
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/property.js +0 -197
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.js +0 -127
- package/lib/commonjs/mol-model-props/integrative/pair-restraints.js +0 -41
- package/lib/commonjs/mol-model-props/sequence/best-database-mapping.js +0 -88
- package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.js +0 -119
- package/lib/commonjs/mol-plugin/animation-loop.js +0 -75
- package/lib/commonjs/mol-plugin/behavior/behavior.js +0 -179
- package/lib/commonjs/mol-plugin/behavior/dynamic/camera.js +0 -137
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.js +0 -139
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/secondary-structure.js +0 -42
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.js +0 -103
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/integrative/cross-link-restraint.js +0 -47
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/sequence/best-database-mapping.js +0 -70
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/structure-info.js +0 -133
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props.js +0 -24
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +0 -304
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +0 -245
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.js +0 -436
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.js +0 -28
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.js +0 -387
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js +0 -167
- package/lib/commonjs/mol-plugin/behavior/static/camera.js +0 -37
- package/lib/commonjs/mol-plugin/behavior/static/misc.js +0 -31
- package/lib/commonjs/mol-plugin/behavior/static/representation.js +0 -100
- package/lib/commonjs/mol-plugin/behavior/static/state.js +0 -259
- package/lib/commonjs/mol-plugin/behavior.js +0 -29
- package/lib/commonjs/mol-plugin/command.js +0 -106
- package/lib/commonjs/mol-plugin/commands.js +0 -60
- package/lib/commonjs/mol-plugin/context.js +0 -441
- package/lib/commonjs/mol-plugin/features.d.ts +0 -9
- package/lib/commonjs/mol-plugin/features.js +0 -38
- package/lib/commonjs/mol-plugin/layout.js +0 -179
- package/lib/commonjs/mol-plugin/state.js +0 -184
- package/lib/commonjs/mol-plugin/util/substructure-parent-helper.js +0 -106
- package/lib/commonjs/mol-plugin/util/task-manager.d.ts +0 -40
- package/lib/commonjs/mol-plugin/util/task-manager.js +0 -144
- package/lib/commonjs/mol-plugin/util/toast.js +0 -85
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.js +0 -413
- package/lib/commonjs/mol-plugin/version.d.ts +0 -10
- package/lib/commonjs/mol-plugin/version.js +0 -14
- package/lib/commonjs/mol-plugin-state/actions/file.js +0 -189
- package/lib/commonjs/mol-plugin-state/actions/structure.js +0 -412
- package/lib/commonjs/mol-plugin-state/animation/built-in/assembly-unwind.js +0 -115
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-rock.js +0 -62
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-spin.js +0 -61
- package/lib/commonjs/mol-plugin-state/animation/built-in/explode-units.js +0 -86
- package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.js +0 -172
- package/lib/commonjs/mol-plugin-state/animation/built-in/spin-structure.js +0 -89
- package/lib/commonjs/mol-plugin-state/animation/built-in/state-interpolation.js +0 -81
- package/lib/commonjs/mol-plugin-state/animation/built-in/state-snapshots.js +0 -97
- package/lib/commonjs/mol-plugin-state/animation/helpers.js +0 -88
- package/lib/commonjs/mol-plugin-state/animation/model.js +0 -26
- package/lib/commonjs/mol-plugin-state/builder/data.js +0 -53
- package/lib/commonjs/mol-plugin-state/builder/preset-provider.js +0 -8
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +0 -291
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.js +0 -114
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +0 -529
- package/lib/commonjs/mol-plugin-state/builder/structure/representation.js +0 -156
- package/lib/commonjs/mol-plugin-state/builder/structure.js +0 -208
- package/lib/commonjs/mol-plugin-state/component.d.ts +0 -22
- package/lib/commonjs/mol-plugin-state/component.js +0 -83
- package/lib/commonjs/mol-plugin-state/formats/provider.js +0 -33
- package/lib/commonjs/mol-plugin-state/formats/shape.js +0 -45
- package/lib/commonjs/mol-plugin-state/formats/structure.js +0 -65
- package/lib/commonjs/mol-plugin-state/formats/trajectory.js +0 -173
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.js +0 -207
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +0 -101
- package/lib/commonjs/mol-plugin-state/helpers/structure-component.js +0 -184
- package/lib/commonjs/mol-plugin-state/helpers/structure-overpaint.js +0 -126
- package/lib/commonjs/mol-plugin-state/helpers/structure-query.js +0 -53
- package/lib/commonjs/mol-plugin-state/helpers/structure-representation-params.js +0 -85
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +0 -723
- package/lib/commonjs/mol-plugin-state/helpers/structure-substance.js +0 -126
- package/lib/commonjs/mol-plugin-state/helpers/structure-transparency.js +0 -124
- package/lib/commonjs/mol-plugin-state/helpers/volume-representation-params.js +0 -85
- package/lib/commonjs/mol-plugin-state/manager/animation.js +0 -304
- package/lib/commonjs/mol-plugin-state/manager/camera.js +0 -138
- package/lib/commonjs/mol-plugin-state/manager/interactivity.js +0 -268
- package/lib/commonjs/mol-plugin-state/manager/loci-label.js +0 -95
- package/lib/commonjs/mol-plugin-state/manager/snapshots.js +0 -377
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +0 -685
- package/lib/commonjs/mol-plugin-state/manager/structure/focus.js +0 -176
- package/lib/commonjs/mol-plugin-state/manager/structure/hierarchy-state.js +0 -256
- package/lib/commonjs/mol-plugin-state/manager/structure/hierarchy.js +0 -351
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +0 -376
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +0 -556
- package/lib/commonjs/mol-plugin-state/manager/volume/hierarchy-state.js +0 -133
- package/lib/commonjs/mol-plugin-state/manager/volume/hierarchy.js +0 -146
- package/lib/commonjs/mol-plugin-state/objects.js +0 -270
- package/lib/commonjs/mol-plugin-state/transforms/data.js +0 -606
- package/lib/commonjs/mol-plugin-state/transforms/helpers.js +0 -43
- package/lib/commonjs/mol-plugin-state/transforms/misc.js +0 -57
- package/lib/commonjs/mol-plugin-state/transforms/model.js +0 -1288
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +0 -1329
- package/lib/commonjs/mol-plugin-state/transforms/shape.js +0 -72
- package/lib/commonjs/mol-plugin-state/transforms/volume.js +0 -237
- package/lib/commonjs/mol-plugin-state/transforms.js +0 -24
- package/lib/commonjs/mol-plugin-ui/base.js +0 -104
- package/lib/commonjs/mol-plugin-ui/context.js +0 -35
- package/lib/commonjs/mol-plugin-ui/controls/action-menu.js +0 -250
- package/lib/commonjs/mol-plugin-ui/controls/color.js +0 -100
- package/lib/commonjs/mol-plugin-ui/controls/common.d.ts +0 -166
- package/lib/commonjs/mol-plugin-ui/controls/common.js +0 -255
- package/lib/commonjs/mol-plugin-ui/controls/icons.d.ts +0 -84
- package/lib/commonjs/mol-plugin-ui/controls/icons.js +0 -223
- package/lib/commonjs/mol-plugin-ui/controls/legend.js +0 -52
- package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.d.ts +0 -40
- package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.js +0 -311
- package/lib/commonjs/mol-plugin-ui/controls/line-graph/point-component.d.ts +0 -10
- package/lib/commonjs/mol-plugin-ui/controls/line-graph/point-component.js +0 -38
- package/lib/commonjs/mol-plugin-ui/controls/parameters.js +0 -1334
- package/lib/commonjs/mol-plugin-ui/controls/screenshot.js +0 -260
- package/lib/commonjs/mol-plugin-ui/controls/slider.d.ts +0 -147
- package/lib/commonjs/mol-plugin-ui/controls/slider.js +0 -624
- package/lib/commonjs/mol-plugin-ui/controls.js +0 -301
- package/lib/commonjs/mol-plugin-ui/custom/volume.js +0 -253
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +0 -14
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +0 -28
- package/lib/commonjs/mol-plugin-ui/index.js +0 -39
- package/lib/commonjs/mol-plugin-ui/left-panel.js +0 -156
- package/lib/commonjs/mol-plugin-ui/plugin.js +0 -256
- package/lib/commonjs/mol-plugin-ui/sequence/chain.js +0 -88
- package/lib/commonjs/mol-plugin-ui/sequence/element.js +0 -89
- package/lib/commonjs/mol-plugin-ui/sequence/hetero.js +0 -106
- package/lib/commonjs/mol-plugin-ui/sequence/polymer.js +0 -132
- package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +0 -282
- package/lib/commonjs/mol-plugin-ui/sequence/wrapper.js +0 -29
- package/lib/commonjs/mol-plugin-ui/sequence.js +0 -387
- package/lib/commonjs/mol-plugin-ui/spec.js +0 -18
- package/lib/commonjs/mol-plugin-ui/state/actions.js +0 -51
- package/lib/commonjs/mol-plugin-ui/state/animation.js +0 -55
- package/lib/commonjs/mol-plugin-ui/state/apply-action.js +0 -59
- package/lib/commonjs/mol-plugin-ui/state/common.js +0 -203
- package/lib/commonjs/mol-plugin-ui/state/snapshots.js +0 -349
- package/lib/commonjs/mol-plugin-ui/state/tree.js +0 -295
- package/lib/commonjs/mol-plugin-ui/state/update-transform.js +0 -115
- package/lib/commonjs/mol-plugin-ui/structure/components.js +0 -367
- package/lib/commonjs/mol-plugin-ui/structure/focus.js +0 -233
- package/lib/commonjs/mol-plugin-ui/structure/generic.js +0 -155
- package/lib/commonjs/mol-plugin-ui/structure/measurements.js +0 -334
- package/lib/commonjs/mol-plugin-ui/structure/selection.js +0 -354
- package/lib/commonjs/mol-plugin-ui/structure/source.js +0 -340
- package/lib/commonjs/mol-plugin-ui/structure/superposition.js +0 -332
- package/lib/commonjs/mol-plugin-ui/structure/volume.js +0 -324
- package/lib/commonjs/mol-plugin-ui/task.js +0 -98
- package/lib/commonjs/mol-plugin-ui/toast.js +0 -57
- package/lib/commonjs/mol-plugin-ui/viewport/canvas.js +0 -58
- package/lib/commonjs/mol-plugin-ui/viewport/help.js +0 -123
- package/lib/commonjs/mol-plugin-ui/viewport/screenshot.js +0 -103
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +0 -155
- package/lib/commonjs/mol-plugin-ui/viewport.js +0 -83
- package/lib/commonjs/mol-repr/representation.js +0 -383
- package/lib/commonjs/mol-repr/shape/loci/angle.js +0 -176
- package/lib/commonjs/mol-repr/shape/loci/common.js +0 -20
- package/lib/commonjs/mol-repr/shape/loci/dihedral.js +0 -257
- package/lib/commonjs/mol-repr/shape/loci/distance.js +0 -96
- package/lib/commonjs/mol-repr/shape/loci/label.js +0 -65
- package/lib/commonjs/mol-repr/shape/loci/orientation.js +0 -103
- package/lib/commonjs/mol-repr/shape/loci/plane.js +0 -61
- package/lib/commonjs/mol-repr/shape/model/unitcell.js +0 -81
- package/lib/commonjs/mol-repr/shape/representation.js +0 -275
- package/lib/commonjs/mol-repr/structure/complex-representation.js +0 -182
- package/lib/commonjs/mol-repr/structure/complex-visual.js +0 -325
- package/lib/commonjs/mol-repr/structure/params.js +0 -37
- package/lib/commonjs/mol-repr/structure/registry.js +0 -59
- package/lib/commonjs/mol-repr/structure/representation/backbone.js +0 -52
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +0 -51
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.js +0 -46
- package/lib/commonjs/mol-repr/structure/representation/cartoon.js +0 -96
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +0 -50
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +0 -42
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +0 -40
- package/lib/commonjs/mol-repr/structure/representation/label.js +0 -40
- package/lib/commonjs/mol-repr/structure/representation/line.js +0 -54
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +0 -41
- package/lib/commonjs/mol-repr/structure/representation/orientation.js +0 -39
- package/lib/commonjs/mol-repr/structure/representation/point.js +0 -38
- package/lib/commonjs/mol-repr/structure/representation/putty.js +0 -54
- package/lib/commonjs/mol-repr/structure/representation/spacefill.js +0 -43
- package/lib/commonjs/mol-repr/structure/representation.js +0 -33
- package/lib/commonjs/mol-repr/structure/units-representation.js +0 -409
- package/lib/commonjs/mol-repr/structure/units-visual.js +0 -404
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.js +0 -113
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +0 -219
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +0 -137
- package/lib/commonjs/mol-repr/structure/visual/element-cross.js +0 -77
- package/lib/commonjs/mol-repr/structure/visual/element-point.js +0 -64
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.js +0 -58
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.js +0 -102
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +0 -133
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +0 -379
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +0 -69
- package/lib/commonjs/mol-repr/structure/visual/label-text.js +0 -137
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +0 -99
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +0 -67
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.js +0 -148
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.js +0 -202
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +0 -118
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.js +0 -124
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.js +0 -101
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js +0 -88
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.js +0 -89
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +0 -191
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js +0 -111
- package/lib/commonjs/mol-repr/structure/visual/util/common.js +0 -317
- package/lib/commonjs/mol-repr/structure/visual/util/element.js +0 -251
- package/lib/commonjs/mol-repr/structure/visual/util/gaussian.js +0 -104
- package/lib/commonjs/mol-repr/structure/visual/util/link.js +0 -366
- package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.js +0 -53
- package/lib/commonjs/mol-repr/structure/visual/util/nucleotide.js +0 -76
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone.js +0 -115
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/curve-segment.d.ts +0 -36
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/curve-segment.js +0 -135
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/gap-iterator.js +0 -66
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.js +0 -449
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +0 -269
- package/lib/commonjs/mol-repr/util.js +0 -185
- package/lib/commonjs/mol-repr/visual.js +0 -316
- package/lib/commonjs/mol-repr/volume/direct-volume.js +0 -142
- package/lib/commonjs/mol-repr/volume/isosurface.js +0 -267
- package/lib/commonjs/mol-repr/volume/registry.js +0 -37
- package/lib/commonjs/mol-repr/volume/representation.js +0 -310
- package/lib/commonjs/mol-repr/volume/slice.js +0 -202
- package/lib/commonjs/mol-repr/volume/util.js +0 -168
- package/lib/commonjs/mol-script/compiler.d.ts +0 -0
- package/lib/commonjs/mol-script/compiler.js +0 -80
- package/lib/commonjs/mol-script/language/builder.d.ts +0 -756
- package/lib/commonjs/mol-script/language/builder.js +0 -74
- package/lib/commonjs/mol-script/language/container.d.ts +0 -6
- package/lib/commonjs/mol-script/language/container.js +0 -8
- package/lib/commonjs/mol-script/language/expression-formatter.d.ts +0 -2
- package/lib/commonjs/mol-script/language/expression-formatter.js +0 -130
- package/lib/commonjs/mol-script/language/expression.d.ts +0 -24
- package/lib/commonjs/mol-script/language/expression.js +0 -27
- package/lib/commonjs/mol-script/language/helpers.d.ts +0 -5
- package/lib/commonjs/mol-script/language/helpers.js +0 -57
- package/lib/commonjs/mol-script/language/parser.d.ts +0 -7
- package/lib/commonjs/mol-script/language/parser.js +0 -168
- package/lib/commonjs/mol-script/language/symbol-table/core.d.ts +0 -254
- package/lib/commonjs/mol-script/language/symbol-table/core.js +0 -169
- package/lib/commonjs/mol-script/language/symbol-table/internal.d.ts +0 -22
- package/lib/commonjs/mol-script/language/symbol-table/internal.js +0 -33
- package/lib/commonjs/mol-script/language/symbol-table/structure-query.d.ts +0 -363
- package/lib/commonjs/mol-script/language/symbol-table/structure-query.js +0 -281
- package/lib/commonjs/mol-script/language/symbol-table.d.ts +0 -589
- package/lib/commonjs/mol-script/language/symbol-table.js +0 -25
- package/lib/commonjs/mol-script/language/symbol.d.ts +0 -73
- package/lib/commonjs/mol-script/language/symbol.js +0 -55
- package/lib/commonjs/mol-script/language/type.d.ts +0 -60
- package/lib/commonjs/mol-script/language/type.js +0 -40
- package/lib/commonjs/mol-script/runtime/environment.d.ts +0 -0
- package/lib/commonjs/mol-script/runtime/environment.js +0 -32
- package/lib/commonjs/mol-script/runtime/expression.d.ts +0 -0
- package/lib/commonjs/mol-script/runtime/expression.js +0 -21
- package/lib/commonjs/mol-script/runtime/query/base.js +0 -175
- package/lib/commonjs/mol-script/runtime/query/compiler.js +0 -11
- package/lib/commonjs/mol-script/runtime/query/table.js +0 -429
- package/lib/commonjs/mol-script/runtime/runtime-macro.d.ts +0 -0
- package/lib/commonjs/mol-script/runtime/runtime-macro.js +0 -68
- package/lib/commonjs/mol-script/runtime/symbol.d.ts +0 -0
- package/lib/commonjs/mol-script/runtime/symbol.js +0 -26
- package/lib/commonjs/mol-script/script/mol-script/examples.d.ts +0 -0
- package/lib/commonjs/mol-script/script/mol-script/examples.js +0 -105
- package/lib/commonjs/mol-script/script/mol-script/parser.d.ts +0 -0
- package/lib/commonjs/mol-script/script/mol-script/parser.js +0 -162
- package/lib/commonjs/mol-script/script/mol-script/script-macro.d.ts +0 -10
- package/lib/commonjs/mol-script/script/mol-script/script-macro.js +0 -47
- package/lib/commonjs/mol-script/script/mol-script/symbols.d.ts +0 -27
- package/lib/commonjs/mol-script/script/mol-script/symbols.js +0 -370
- package/lib/commonjs/mol-script/script/parser.d.ts +0 -8
- package/lib/commonjs/mol-script/script/parser.js +0 -9
- package/lib/commonjs/mol-script/script.js +0 -57
- package/lib/commonjs/mol-script/util/id-list.js +0 -89
- package/lib/commonjs/mol-state/action/manager.js +0 -99
- package/lib/commonjs/mol-state/action.js +0 -63
- package/lib/commonjs/mol-state/index.js +0 -17
- package/lib/commonjs/mol-state/object.js +0 -189
- package/lib/commonjs/mol-state/state/builder.js +0 -276
- package/lib/commonjs/mol-state/state/selection.js +0 -377
- package/lib/commonjs/mol-state/state.js +0 -992
- package/lib/commonjs/mol-state/transform.js +0 -189
- package/lib/commonjs/mol-state/transformer.js +0 -119
- package/lib/commonjs/mol-state/tree/immutable.js +0 -176
- package/lib/commonjs/mol-state/tree/spine.js +0 -86
- package/lib/commonjs/mol-state/tree/transient.js +0 -301
- package/lib/commonjs/mol-state/tree.js +0 -13
- package/lib/commonjs/mol-task/execution/observable.d.ts +0 -46
- package/lib/commonjs/mol-task/execution/observable.js +0 -246
- package/lib/commonjs/mol-task/execution/progress.d.ts +0 -22
- package/lib/commonjs/mol-task/execution/progress.js +0 -29
- package/lib/commonjs/mol-task/execution/runtime-context.d.ts +0 -24
- package/lib/commonjs/mol-task/execution/runtime-context.js +0 -15
- package/lib/commonjs/mol-task/execution/synchronous.d.ts +0 -12
- package/lib/commonjs/mol-task/execution/synchronous.js +0 -19
- package/lib/commonjs/mol-task/index.d.ts +0 -12
- package/lib/commonjs/mol-task/index.js +0 -21
- package/lib/commonjs/mol-task/task.d.ts +0 -49
- package/lib/commonjs/mol-task/task.js +0 -83
- package/lib/commonjs/mol-task/util/chunked.d.ts +0 -9
- package/lib/commonjs/mol-task/util/chunked.js +0 -53
- package/lib/commonjs/mol-task/util/multistep.d.ts +0 -10
- package/lib/commonjs/mol-task/util/multistep.js +0 -18
- package/lib/commonjs/mol-task/util/scheduler.d.ts +0 -13
- package/lib/commonjs/mol-task/util/scheduler.js +0 -194
- package/lib/commonjs/mol-task/util/user-timing.d.ts +0 -11
- package/lib/commonjs/mol-task/util/user-timing.js +0 -32
- package/lib/commonjs/mol-theme/clipping.js +0 -185
- package/lib/commonjs/mol-theme/color/atom-id.js +0 -84
- package/lib/commonjs/mol-theme/color/carbohydrate-symbol.js +0 -70
- package/lib/commonjs/mol-theme/color/chain-id.js +0 -118
- package/lib/commonjs/mol-theme/color/element-index.js +0 -75
- package/lib/commonjs/mol-theme/color/entity-source.js +0 -156
- package/lib/commonjs/mol-theme/color/hydrophobicity.js +0 -96
- package/lib/commonjs/mol-theme/color/model-index.js +0 -71
- package/lib/commonjs/mol-theme/color/molecule-type.js +0 -85
- package/lib/commonjs/mol-theme/color/occupancy.js +0 -66
- package/lib/commonjs/mol-theme/color/operator-hkl.js +0 -114
- package/lib/commonjs/mol-theme/color/operator-name.js +0 -76
- package/lib/commonjs/mol-theme/color/partial-charge.js +0 -63
- package/lib/commonjs/mol-theme/color/polymer-id.js +0 -126
- package/lib/commonjs/mol-theme/color/polymer-index.js +0 -86
- package/lib/commonjs/mol-theme/color/residue-name.js +0 -138
- package/lib/commonjs/mol-theme/color/secondary-structure.js +0 -130
- package/lib/commonjs/mol-theme/color/sequence-id.js +0 -111
- package/lib/commonjs/mol-theme/color/shape-group.js +0 -43
- package/lib/commonjs/mol-theme/color/uncertainty.js +0 -70
- package/lib/commonjs/mol-theme/color/uniform.js +0 -43
- package/lib/commonjs/mol-theme/color/unit-index.js +0 -73
- package/lib/commonjs/mol-theme/color/volume-value.js +0 -57
- package/lib/commonjs/mol-theme/label.js +0 -362
- package/lib/commonjs/mol-theme/overpaint.js +0 -132
- package/lib/commonjs/mol-theme/size/physical.js +0 -70
- package/lib/commonjs/mol-theme/size/shape-group.js +0 -42
- package/lib/commonjs/mol-theme/size/uncertainty.js +0 -62
- package/lib/commonjs/mol-theme/size/uniform.js +0 -38
- package/lib/commonjs/mol-theme/size.js +0 -36
- package/lib/commonjs/mol-theme/substance.js +0 -141
- package/lib/commonjs/mol-theme/theme.js +0 -136
- package/lib/commonjs/mol-theme/transparency.js +0 -140
- package/lib/commonjs/mol-util/array.d.ts +0 -37
- package/lib/commonjs/mol-util/array.js +0 -177
- package/lib/commonjs/mol-util/assets.d.ts +0 -58
- package/lib/commonjs/mol-util/assets.js +0 -153
- package/lib/commonjs/mol-util/async-queue.d.ts +0 -14
- package/lib/commonjs/mol-util/async-queue.js +0 -54
- package/lib/commonjs/mol-util/binding.d.ts +0 -32
- package/lib/commonjs/mol-util/binding.js +0 -116
- package/lib/commonjs/mol-util/bit-flags.d.ts +0 -13
- package/lib/commonjs/mol-util/bit-flags.js +0 -20
- package/lib/commonjs/mol-util/clip.js +0 -97
- package/lib/commonjs/mol-util/color/color.d.ts +0 -68
- package/lib/commonjs/mol-util/color/color.js +0 -153
- package/lib/commonjs/mol-util/color/distinct.js +0 -146
- package/lib/commonjs/mol-util/color/index.d.ts +0 -7
- package/lib/commonjs/mol-util/color/index.js +0 -15
- package/lib/commonjs/mol-util/color/lists.d.ts +0 -74
- package/lib/commonjs/mol-util/color/lists.js +0 -91
- package/lib/commonjs/mol-util/color/names.d.ts +0 -167
- package/lib/commonjs/mol-util/color/names.js +0 -175
- package/lib/commonjs/mol-util/color/palette.js +0 -89
- package/lib/commonjs/mol-util/color/params.js +0 -19
- package/lib/commonjs/mol-util/color/scale.d.ts +0 -31
- package/lib/commonjs/mol-util/color/scale.js +0 -84
- package/lib/commonjs/mol-util/color/spaces/hcl.d.ts +0 -46
- package/lib/commonjs/mol-util/color/spaces/hcl.js +0 -106
- package/lib/commonjs/mol-util/color/spaces/lab.d.ts +0 -39
- package/lib/commonjs/mol-util/color/spaces/lab.js +0 -152
- package/lib/commonjs/mol-util/color/swatches.d.ts +0 -8
- package/lib/commonjs/mol-util/color/swatches.js +0 -25
- package/lib/commonjs/mol-util/console-logger.d.ts +0 -13
- package/lib/commonjs/mol-util/console-logger.js +0 -52
- package/lib/commonjs/mol-util/data-source.d.ts +0 -48
- package/lib/commonjs/mol-util/data-source.js +0 -389
- package/lib/commonjs/mol-util/date.d.ts +0 -7
- package/lib/commonjs/mol-util/date.js +0 -24
- package/lib/commonjs/mol-util/debug.d.ts +0 -18
- package/lib/commonjs/mol-util/debug.js +0 -46
- package/lib/commonjs/mol-util/download.d.ts +0 -6
- package/lib/commonjs/mol-util/download.js +0 -74
- package/lib/commonjs/mol-util/file-info.d.ts +0 -20
- package/lib/commonjs/mol-util/file-info.js +0 -54
- package/lib/commonjs/mol-util/graphql-client.d.ts +0 -44
- package/lib/commonjs/mol-util/graphql-client.js +0 -67
- package/lib/commonjs/mol-util/id-factory.d.ts +0 -7
- package/lib/commonjs/mol-util/id-factory.js +0 -21
- package/lib/commonjs/mol-util/image.d.ts +0 -18
- package/lib/commonjs/mol-util/image.js +0 -46
- package/lib/commonjs/mol-util/index.d.ts +0 -29
- package/lib/commonjs/mol-util/index.js +0 -222
- package/lib/commonjs/mol-util/input/event-offset.d.ts +0 -7
- package/lib/commonjs/mol-util/input/event-offset.js +0 -27
- package/lib/commonjs/mol-util/input/input-observer.d.ts +0 -136
- package/lib/commonjs/mol-util/input/input-observer.js +0 -593
- package/lib/commonjs/mol-util/is-little-endian.d.ts +0 -6
- package/lib/commonjs/mol-util/is-little-endian.js +0 -18
- package/lib/commonjs/mol-util/legend.d.ts +0 -20
- package/lib/commonjs/mol-util/legend.js +0 -17
- package/lib/commonjs/mol-util/log-entry.d.ts +0 -18
- package/lib/commonjs/mol-util/log-entry.js +0 -21
- package/lib/commonjs/mol-util/lru-cache.d.ts +0 -21
- package/lib/commonjs/mol-util/lru-cache.js +0 -47
- package/lib/commonjs/mol-util/make-dir.d.ts +0 -6
- package/lib/commonjs/mol-util/make-dir.js +0 -24
- package/lib/commonjs/mol-util/map.d.ts +0 -11
- package/lib/commonjs/mol-util/map.js +0 -36
- package/lib/commonjs/mol-util/marker-action.d.ts +0 -49
- package/lib/commonjs/mol-util/marker-action.js +0 -286
- package/lib/commonjs/mol-util/mask.d.ts +0 -48
- package/lib/commonjs/mol-util/mask.js +0 -191
- package/lib/commonjs/mol-util/material.js +0 -43
- package/lib/commonjs/mol-util/memoize.d.ts +0 -9
- package/lib/commonjs/mol-util/memoize.js +0 -45
- package/lib/commonjs/mol-util/monadic-parser.d.ts +0 -119
- package/lib/commonjs/mol-util/monadic-parser.js +0 -490
- package/lib/commonjs/mol-util/now.d.ts +0 -13
- package/lib/commonjs/mol-util/now.js +0 -47
- package/lib/commonjs/mol-util/number-packing.d.ts +0 -11
- package/lib/commonjs/mol-util/number-packing.js +0 -36
- package/lib/commonjs/mol-util/number.d.ts +0 -26
- package/lib/commonjs/mol-util/number.js +0 -85
- package/lib/commonjs/mol-util/object.d.ts +0 -23
- package/lib/commonjs/mol-util/object.js +0 -127
- package/lib/commonjs/mol-util/param-definition.js +0 -612
- package/lib/commonjs/mol-util/param-mapping.js +0 -26
- package/lib/commonjs/mol-util/performance-monitor.d.ts +0 -14
- package/lib/commonjs/mol-util/performance-monitor.js +0 -73
- package/lib/commonjs/mol-util/polyfill.d.ts +0 -5
- package/lib/commonjs/mol-util/polyfill.js +0 -610
- package/lib/commonjs/mol-util/read.d.ts +0 -11
- package/lib/commonjs/mol-util/read.js +0 -70
- package/lib/commonjs/mol-util/reference-cache.d.ts +0 -28
- package/lib/commonjs/mol-util/reference-cache.js +0 -57
- package/lib/commonjs/mol-util/retry-if.d.ts +0 -11
- package/lib/commonjs/mol-util/retry-if.js +0 -48
- package/lib/commonjs/mol-util/rx-event-helper.d.ts +0 -15
- package/lib/commonjs/mol-util/rx-event-helper.js +0 -48
- package/lib/commonjs/mol-util/set.d.ts +0 -26
- package/lib/commonjs/mol-util/set.js +0 -133
- package/lib/commonjs/mol-util/sleep.d.ts +0 -6
- package/lib/commonjs/mol-util/sleep.js +0 -13
- package/lib/commonjs/mol-util/string-builder.d.ts +0 -38
- package/lib/commonjs/mol-util/string-builder.js +0 -164
- package/lib/commonjs/mol-util/string.d.ts +0 -31
- package/lib/commonjs/mol-util/string.js +0 -110
- package/lib/commonjs/mol-util/type-helpers.d.ts +0 -35
- package/lib/commonjs/mol-util/type-helpers.js +0 -23
- package/lib/commonjs/mol-util/url.d.ts +0 -7
- package/lib/commonjs/mol-util/url.js +0 -21
- package/lib/commonjs/mol-util/uuid.d.ts +0 -16
- package/lib/commonjs/mol-util/uuid.js +0 -40
- package/lib/commonjs/mol-util/value-cell.d.ts +0 -41
- package/lib/commonjs/mol-util/value-cell.js +0 -55
- package/lib/commonjs/mol-util/zip/bin.d.ts +0 -17
- package/lib/commonjs/mol-util/zip/bin.js +0 -122
- package/lib/commonjs/mol-util/zip/checksum.d.ts +0 -10
- package/lib/commonjs/mol-util/zip/checksum.js +0 -52
- package/lib/commonjs/mol-util/zip/deflate.d.ts +0 -10
- package/lib/commonjs/mol-util/zip/deflate.js +0 -404
- package/lib/commonjs/mol-util/zip/huffman.d.ts +0 -17
- package/lib/commonjs/mol-util/zip/huffman.js +0 -112
- package/lib/commonjs/mol-util/zip/inflate.d.ts +0 -10
- package/lib/commonjs/mol-util/zip/inflate.js +0 -232
- package/lib/commonjs/mol-util/zip/util.d.ts +0 -40
- package/lib/commonjs/mol-util/zip/util.js +0 -136
- package/lib/commonjs/mol-util/zip/zip.d.ts +0 -29
- package/lib/commonjs/mol-util/zip/zip.js +0 -376
- package/lib/commonjs/servers/common/file-handle.d.ts +0 -8
- package/lib/commonjs/servers/common/file-handle.js +0 -70
- package/lib/commonjs/servers/common/swagger-ui/index.d.ts +0 -16
- package/lib/commonjs/servers/common/swagger-ui/index.js +0 -31
- package/lib/commonjs/servers/common/swagger-ui/indexTemplate.d.ts +0 -1
- package/lib/commonjs/servers/common/swagger-ui/indexTemplate.js +0 -5
- package/lib/commonjs/servers/common/util.d.ts +0 -7
- package/lib/commonjs/servers/common/util.js +0 -31
- package/lib/commonjs/servers/model/config.js +0 -267
- package/lib/commonjs/servers/model/preprocess/converter.d.ts +0 -8
- package/lib/commonjs/servers/model/preprocess/converter.js +0 -81
- package/lib/commonjs/servers/model/preprocess/master.js +0 -74
- package/lib/commonjs/servers/model/preprocess/parallel.js +0 -124
- package/lib/commonjs/servers/model/preprocess/preprocess.js +0 -102
- package/lib/commonjs/servers/model/preprocess/util.d.ts +0 -8
- package/lib/commonjs/servers/model/preprocess/util.js +0 -20
- package/lib/commonjs/servers/model/preprocess.js +0 -20
- package/lib/commonjs/servers/model/properties/pdbe.js +0 -21
- package/lib/commonjs/servers/model/properties/providers/pdbe.js +0 -126
- package/lib/commonjs/servers/model/properties/providers/wwpdb.js +0 -132
- package/lib/commonjs/servers/model/properties/wwpdb.js +0 -19
- package/lib/commonjs/servers/model/property-provider.js +0 -63
- package/lib/commonjs/servers/model/query/atoms.js +0 -110
- package/lib/commonjs/servers/model/query/schemas.d.ts +0 -10
- package/lib/commonjs/servers/model/query/schemas.js +0 -61
- package/lib/commonjs/servers/model/query.js +0 -80
- package/lib/commonjs/servers/model/server/api-local.js +0 -106
- package/lib/commonjs/servers/model/server/api-schema.js +0 -183
- package/lib/commonjs/servers/model/server/api-web-multiple.js +0 -14
- package/lib/commonjs/servers/model/server/api-web.js +0 -191
- package/lib/commonjs/servers/model/server/api.js +0 -294
- package/lib/commonjs/servers/model/server/cache.js +0 -88
- package/lib/commonjs/servers/model/server/jobs.js +0 -88
- package/lib/commonjs/servers/model/server/query.js +0 -377
- package/lib/commonjs/servers/model/server/structure-wrapper.js +0 -354
- package/lib/commonjs/servers/model/server.js +0 -66
- package/lib/commonjs/servers/model/test.d.ts +0 -0
- package/lib/commonjs/servers/model/test.js +0 -82
- package/lib/commonjs/servers/model/utils/fetch-props-pdbe.d.ts +0 -6
- package/lib/commonjs/servers/model/utils/fetch-props-pdbe.js +0 -118
- package/lib/commonjs/servers/model/utils/fetch-retry.d.ts +0 -7
- package/lib/commonjs/servers/model/utils/fetch-retry.js +0 -43
- package/lib/commonjs/servers/model/utils/tar.d.ts +0 -22
- package/lib/commonjs/servers/model/utils/tar.js +0 -179
- package/lib/commonjs/servers/model/utils/writer.d.ts +0 -77
- package/lib/commonjs/servers/model/utils/writer.js +0 -223
- package/lib/commonjs/servers/model/version.d.ts +0 -6
- package/lib/commonjs/servers/model/version.js +0 -10
- package/lib/commonjs/servers/plugin-state/api-schema.d.ts +0 -107
- package/lib/commonjs/servers/plugin-state/api-schema.js +0 -135
- package/lib/commonjs/servers/plugin-state/config.d.ts +0 -12
- package/lib/commonjs/servers/plugin-state/config.js +0 -25
- package/lib/commonjs/servers/plugin-state/index.d.ts +0 -6
- package/lib/commonjs/servers/plugin-state/index.js +0 -208
- package/lib/commonjs/servers/plugin-state/version.d.ts +0 -1
- package/lib/commonjs/servers/plugin-state/version.js +0 -5
- package/lib/commonjs/servers/volume/common/binary-schema.d.ts +0 -42
- package/lib/commonjs/servers/volume/common/binary-schema.js +0 -176
- package/lib/commonjs/servers/volume/common/data-format.d.ts +0 -53
- package/lib/commonjs/servers/volume/common/data-format.js +0 -70
- package/lib/commonjs/servers/volume/common/file.d.ts +0 -12
- package/lib/commonjs/servers/volume/common/file.js +0 -86
- package/lib/commonjs/servers/volume/config.d.ts +0 -47
- package/lib/commonjs/servers/volume/config.js +0 -197
- package/lib/commonjs/servers/volume/pack/data-model.js +0 -43
- package/lib/commonjs/servers/volume/pack/downsampling.js +0 -168
- package/lib/commonjs/servers/volume/pack/format/ccp4.js +0 -72
- package/lib/commonjs/servers/volume/pack/format/dsn6.js +0 -76
- package/lib/commonjs/servers/volume/pack/format.js +0 -82
- package/lib/commonjs/servers/volume/pack/main.js +0 -186
- package/lib/commonjs/servers/volume/pack/sampling.js +0 -272
- package/lib/commonjs/servers/volume/pack/version.d.ts +0 -1
- package/lib/commonjs/servers/volume/pack/version.js +0 -5
- package/lib/commonjs/servers/volume/pack/writer.js +0 -86
- package/lib/commonjs/servers/volume/pack.js +0 -62
- package/lib/commonjs/servers/volume/query.d.ts +0 -10
- package/lib/commonjs/servers/volume/query.js +0 -79
- package/lib/commonjs/servers/volume/server/algebra/box.d.ts +0 -32
- package/lib/commonjs/servers/volume/server/algebra/box.js +0 -123
- package/lib/commonjs/servers/volume/server/algebra/coordinate.d.ts +0 -65
- package/lib/commonjs/servers/volume/server/algebra/coordinate.js +0 -137
- package/lib/commonjs/servers/volume/server/api.d.ts +0 -20
- package/lib/commonjs/servers/volume/server/api.js +0 -115
- package/lib/commonjs/servers/volume/server/local-api.d.ts +0 -36
- package/lib/commonjs/servers/volume/server/local-api.js +0 -145
- package/lib/commonjs/servers/volume/server/query/compose.d.ts +0 -9
- package/lib/commonjs/servers/volume/server/query/compose.js +0 -124
- package/lib/commonjs/servers/volume/server/query/data-model.d.ts +0 -91
- package/lib/commonjs/servers/volume/server/query/data-model.js +0 -10
- package/lib/commonjs/servers/volume/server/query/encode.d.ts +0 -9
- package/lib/commonjs/servers/volume/server/query/encode.js +0 -162
- package/lib/commonjs/servers/volume/server/query/execute.d.ts +0 -9
- package/lib/commonjs/servers/volume/server/query/execute.js +0 -254
- package/lib/commonjs/servers/volume/server/query/identify.d.ts +0 -11
- package/lib/commonjs/servers/volume/server/query/identify.js +0 -112
- package/lib/commonjs/servers/volume/server/state.d.ts +0 -12
- package/lib/commonjs/servers/volume/server/state.js +0 -16
- package/lib/commonjs/servers/volume/server/version.d.ts +0 -2
- package/lib/commonjs/servers/volume/server/version.js +0 -6
- package/lib/commonjs/servers/volume/server/web-api.d.ts +0 -10
- package/lib/commonjs/servers/volume/server/web-api.js +0 -226
- package/lib/commonjs/servers/volume/server/web-schema.d.ts +0 -245
- package/lib/commonjs/servers/volume/server/web-schema.js +0 -263
- package/lib/commonjs/servers/volume/server.d.ts +0 -10
- package/lib/commonjs/servers/volume/server.js +0 -59
|
@@ -1,123 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.HelpContent = exports.ViewportHelpContent = exports.HelpGroup = exports.HelpText = exports.BindingsHelp = void 0;
|
|
4
|
-
var tslib_1 = require("tslib");
|
|
5
|
-
var jsx_runtime_1 = require("react/jsx-runtime");
|
|
6
|
-
/**
|
|
7
|
-
* Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
8
|
-
*
|
|
9
|
-
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
10
|
-
*/
|
|
11
|
-
var React = (0, tslib_1.__importStar)(require("react"));
|
|
12
|
-
var binding_1 = require("../../mol-util/binding");
|
|
13
|
-
var base_1 = require("../base");
|
|
14
|
-
var mol_state_1 = require("../../mol-state");
|
|
15
|
-
var representation_1 = require("../../mol-plugin/behavior/dynamic/representation");
|
|
16
|
-
var representation_2 = require("../../mol-plugin/behavior/dynamic/representation");
|
|
17
|
-
var icons_1 = require("../controls/icons");
|
|
18
|
-
var common_1 = require("../controls/common");
|
|
19
|
-
function getBindingsList(bindings) {
|
|
20
|
-
return Object.keys(bindings).map(function (k) { return [k, bindings[k]]; });
|
|
21
|
-
}
|
|
22
|
-
var BindingsHelp = /** @class */ (function (_super) {
|
|
23
|
-
(0, tslib_1.__extends)(BindingsHelp, _super);
|
|
24
|
-
function BindingsHelp() {
|
|
25
|
-
return _super !== null && _super.apply(this, arguments) || this;
|
|
26
|
-
}
|
|
27
|
-
BindingsHelp.prototype.getBindingComponents = function () {
|
|
28
|
-
var bindingsList = getBindingsList(this.props.bindings);
|
|
29
|
-
return (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: bindingsList.map(function (value) {
|
|
30
|
-
var name = value[0], binding = value[1];
|
|
31
|
-
return !binding_1.Binding.isEmpty(binding)
|
|
32
|
-
? (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { marginBottom: '6px' } }, { children: [(0, jsx_runtime_1.jsx)("b", { children: binding.action }, void 0), (0, jsx_runtime_1.jsx)("br", {}, void 0), (0, jsx_runtime_1.jsx)("span", { dangerouslySetInnerHTML: { __html: binding_1.Binding.format(binding, name) } }, void 0)] }), name)
|
|
33
|
-
: null;
|
|
34
|
-
}) }, void 0);
|
|
35
|
-
};
|
|
36
|
-
BindingsHelp.prototype.render = function () {
|
|
37
|
-
return (0, jsx_runtime_1.jsx)(HelpText, { children: this.getBindingComponents() }, void 0);
|
|
38
|
-
};
|
|
39
|
-
return BindingsHelp;
|
|
40
|
-
}(React.PureComponent));
|
|
41
|
-
exports.BindingsHelp = BindingsHelp;
|
|
42
|
-
var HelpText = /** @class */ (function (_super) {
|
|
43
|
-
(0, tslib_1.__extends)(HelpText, _super);
|
|
44
|
-
function HelpText() {
|
|
45
|
-
return _super !== null && _super.apply(this, arguments) || this;
|
|
46
|
-
}
|
|
47
|
-
HelpText.prototype.render = function () {
|
|
48
|
-
return (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-help-text' }, { children: (0, jsx_runtime_1.jsx)("div", { children: this.props.children }, void 0) }), void 0);
|
|
49
|
-
};
|
|
50
|
-
return HelpText;
|
|
51
|
-
}(React.PureComponent));
|
|
52
|
-
exports.HelpText = HelpText;
|
|
53
|
-
var HelpGroup = /** @class */ (function (_super) {
|
|
54
|
-
(0, tslib_1.__extends)(HelpGroup, _super);
|
|
55
|
-
function HelpGroup() {
|
|
56
|
-
var _this = _super !== null && _super.apply(this, arguments) || this;
|
|
57
|
-
_this.state = {
|
|
58
|
-
header: _this.props.header,
|
|
59
|
-
isExpanded: !!_this.props.initiallyExpanded
|
|
60
|
-
};
|
|
61
|
-
_this.toggleExpanded = function () { return _this.setState({ isExpanded: !_this.state.isExpanded }); };
|
|
62
|
-
return _this;
|
|
63
|
-
}
|
|
64
|
-
HelpGroup.prototype.render = function () {
|
|
65
|
-
return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-control-group-wrapper' }, { children: [(0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-group-header' }, { children: (0, jsx_runtime_1.jsxs)(common_1.Button, (0, tslib_1.__assign)({ onClick: this.toggleExpanded }, { children: [(0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: this.state.isExpanded ? icons_1.ArrowDropDownSvg : icons_1.ArrowRightSvg }, void 0), this.props.header] }), void 0) }), void 0), this.state.isExpanded && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset', style: { display: this.state.isExpanded ? 'block' : 'none' } }, { children: this.props.children }), void 0)] }), void 0);
|
|
66
|
-
};
|
|
67
|
-
return HelpGroup;
|
|
68
|
-
}(React.PureComponent));
|
|
69
|
-
exports.HelpGroup = HelpGroup;
|
|
70
|
-
function HelpSection(props) {
|
|
71
|
-
return (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-simple-help-section' }, { children: props.header }), void 0);
|
|
72
|
-
}
|
|
73
|
-
var ViewportHelpContent = /** @class */ (function (_super) {
|
|
74
|
-
(0, tslib_1.__extends)(ViewportHelpContent, _super);
|
|
75
|
-
function ViewportHelpContent() {
|
|
76
|
-
return _super !== null && _super.apply(this, arguments) || this;
|
|
77
|
-
}
|
|
78
|
-
ViewportHelpContent.prototype.componentDidMount = function () {
|
|
79
|
-
var _this = this;
|
|
80
|
-
this.subscribe(this.plugin.events.canvas3d.settingsUpdated, function () { return _this.forceUpdate(); });
|
|
81
|
-
};
|
|
82
|
-
ViewportHelpContent.prototype.render = function () {
|
|
83
|
-
var interactionBindings = {};
|
|
84
|
-
this.plugin.spec.behaviors.forEach(function (b) {
|
|
85
|
-
var bindings = b.defaultParams.bindings;
|
|
86
|
-
if (bindings)
|
|
87
|
-
Object.assign(interactionBindings, bindings);
|
|
88
|
-
});
|
|
89
|
-
return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(!this.props.selectOnly && this.plugin.canvas3d) && (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Moving in 3D' }, { children: (0, jsx_runtime_1.jsx)(BindingsHelp, { bindings: this.plugin.canvas3d.props.trackball.bindings }, void 0) }), 'trackball'), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Mouse Controls' }, { children: (0, jsx_runtime_1.jsx)(BindingsHelp, { bindings: interactionBindings }, void 0) }), 'interactions')] }, void 0);
|
|
90
|
-
};
|
|
91
|
-
return ViewportHelpContent;
|
|
92
|
-
}(base_1.PluginUIComponent));
|
|
93
|
-
exports.ViewportHelpContent = ViewportHelpContent;
|
|
94
|
-
var HelpContent = /** @class */ (function (_super) {
|
|
95
|
-
(0, tslib_1.__extends)(HelpContent, _super);
|
|
96
|
-
function HelpContent() {
|
|
97
|
-
return _super !== null && _super.apply(this, arguments) || this;
|
|
98
|
-
}
|
|
99
|
-
HelpContent.prototype.componentDidMount = function () {
|
|
100
|
-
var _this = this;
|
|
101
|
-
this.subscribe(this.plugin.events.canvas3d.settingsUpdated, function () { return _this.forceUpdate(); });
|
|
102
|
-
};
|
|
103
|
-
HelpContent.prototype.formatTriggers = function (binding) {
|
|
104
|
-
return binding.triggers.map(function (t) { return binding_1.Binding.Trigger.format(t); }).join(' or ');
|
|
105
|
-
};
|
|
106
|
-
HelpContent.prototype.getTriggerFor = function (transformer, name) {
|
|
107
|
-
var state = this.plugin.state.behaviors;
|
|
108
|
-
var selections = state.select(mol_state_1.StateSelection.Generators.ofTransformer(transformer));
|
|
109
|
-
var params = selections.length === 1 ? selections[0].params : undefined;
|
|
110
|
-
var bindings = params ? params.values.bindings : {};
|
|
111
|
-
var binding = name in bindings ? bindings[name] : binding_1.Binding.Empty;
|
|
112
|
-
return this.formatTriggers(binding);
|
|
113
|
-
};
|
|
114
|
-
HelpContent.prototype.render = function () {
|
|
115
|
-
var selectToggleTriggers = this.getTriggerFor(representation_1.SelectLoci, 'clickSelectToggle');
|
|
116
|
-
var focusTriggers = this.getTriggerFor(representation_2.FocusLoci, 'clickFocus');
|
|
117
|
-
// TODO: interactive help, for example for density
|
|
118
|
-
return (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(HelpSection, { header: 'Interface Controls' }, void 0), (0, jsx_runtime_1.jsxs)(HelpGroup, (0, tslib_1.__assign)({ header: 'Inline Help' }, { children: [(0, jsx_runtime_1.jsx)(HelpText, { children: "Many user interface elements show a little questionmark icon when hovered over. Clicking the icon toggles the display of an inline help text." }, void 0), (0, jsx_runtime_1.jsx)(HelpText, { children: "Tooltips may provide additional information on a user interface element and are shown when hovering over it with the mouse." }, void 0)] }), void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Selections' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["The viewer allows changing colors and representations for selections of atoms, residues or chains. Selections can be created by", (0, jsx_runtime_1.jsxs)("ul", (0, tslib_1.__assign)({ style: { paddingLeft: '20px' } }, { children: [(0, jsx_runtime_1.jsxs)("li", { children: ["picking elements on the 3D canvas or the sequence view using the mouse, e.g. toggle selection using ", selectToggleTriggers, " (for more see help section on ", (0, jsx_runtime_1.jsx)("i", { children: "Mouse Controls" }, void 0), ")"] }, void 0), (0, jsx_runtime_1.jsxs)("li", { children: ["using the ", (0, jsx_runtime_1.jsx)("i", { children: "Add" }, void 0), ", ", (0, jsx_runtime_1.jsx)("i", { children: "Remove" }, void 0), " and ", (0, jsx_runtime_1.jsx)("i", { children: "Only" }, void 0), " dropdown buttons in the ", (0, jsx_runtime_1.jsx)("i", { children: "Manage Selection" }, void 0), " panel which allow modifing the current selection by predefined sets"] }, void 0)] }), void 0)] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Coloring' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["There are two ways to color structures. Every representation (e.g. cartoon or spacefill) has a color theme which can be changed using the dropdown for each representation in the ", (0, jsx_runtime_1.jsx)("i", { children: "Structure Settings" }, void 0), " panel. Additionally any selection atoms, residues or chains can by given a custom color. For that, first select the parts of the structure to be colored (see help section on ", (0, jsx_runtime_1.jsx)("i", { children: "Selections" }, void 0), ") and, second, choose a color from the color dropdown botton in the ", (0, jsx_runtime_1.jsx)("i", { children: "Selection" }, void 0), " row of the ", (0, jsx_runtime_1.jsx)("i", { children: "Change Representation" }, void 0), " panel. The theme color can be seen as a base color that is overpainted by the custom color. Custom colors can be removed for a selection with the 'Clear' option in the color dropdown."] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Representations' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["Structures can be shown with many different representations (e.g. cartoon or spacefill). The ", (0, jsx_runtime_1.jsx)("i", { children: "Change Representation" }, void 0), " panel offers a collection of predefined styles which can be applied using the ", (0, jsx_runtime_1.jsx)("i", { children: "Preset" }, void 0), " dropdown button. Additionally any selection atoms, residues or chains can by shown with a custom representation. For that, first select the parts of the structure to be mofified (see help section on ", (0, jsx_runtime_1.jsx)("i", { children: "Selections" }, void 0), ") and, second, choose a representation to hide or show from the ", (0, jsx_runtime_1.jsx)("i", { children: "Show" }, void 0), " and ", (0, jsx_runtime_1.jsx)("i", { children: "Hide" }, void 0), " dropdown bottons in the ", (0, jsx_runtime_1.jsx)("i", { children: "Selection" }, void 0), " row of the ", (0, jsx_runtime_1.jsx)("i", { children: "Change Representation" }, void 0), " panel. The ", (0, jsx_runtime_1.jsx)("i", { children: "Everything" }, void 0), " row applies the action to the whole structure instead of the current selection."] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Surroundings' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["To show the surroundings of a residue or ligand, click it in the 3D scene or in the sequence widget using ", focusTriggers, "."] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpSection, { header: 'How-to Guides' }, void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Create an Image' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: [(0, jsx_runtime_1.jsxs)("p", { children: ["Use the ", (0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.CameraSvg }, void 0), " icon in the viewport to bring up the screenshot controls."] }, void 0), (0, jsx_runtime_1.jsxs)("p", { children: ["To adjust the size of the image, use the ", (0, jsx_runtime_1.jsx)("i", { children: "Resolution" }, void 0), " dropdown."] }, void 0)] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpSection, { header: 'Mouse Controls' }, void 0), (0, jsx_runtime_1.jsx)(ViewportHelpContent, {}, void 0)] }, void 0);
|
|
119
|
-
};
|
|
120
|
-
return HelpContent;
|
|
121
|
-
}(base_1.PluginUIComponent));
|
|
122
|
-
exports.HelpContent = HelpContent;
|
|
123
|
-
//# sourceMappingURL=help.js.map
|
|
@@ -1,103 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.DownloadScreenshotControls = void 0;
|
|
4
|
-
var tslib_1 = require("tslib");
|
|
5
|
-
var jsx_runtime_1 = require("react/jsx-runtime");
|
|
6
|
-
var commands_1 = require("../../mol-plugin/commands");
|
|
7
|
-
var base_1 = require("../base");
|
|
8
|
-
var common_1 = require("../controls/common");
|
|
9
|
-
var icons_1 = require("../controls/icons");
|
|
10
|
-
var parameters_1 = require("../controls/parameters");
|
|
11
|
-
var screenshot_1 = require("../controls/screenshot");
|
|
12
|
-
var use_behavior_1 = require("../hooks/use-behavior");
|
|
13
|
-
var snapshots_1 = require("../state/snapshots");
|
|
14
|
-
var DownloadScreenshotControls = /** @class */ (function (_super) {
|
|
15
|
-
(0, tslib_1.__extends)(DownloadScreenshotControls, _super);
|
|
16
|
-
function DownloadScreenshotControls() {
|
|
17
|
-
var _this = _super !== null && _super.apply(this, arguments) || this;
|
|
18
|
-
_this.state = {
|
|
19
|
-
showPreview: true,
|
|
20
|
-
isDisabled: false
|
|
21
|
-
};
|
|
22
|
-
_this.download = function () {
|
|
23
|
-
var _a;
|
|
24
|
-
(_a = _this.plugin.helpers.viewportScreenshot) === null || _a === void 0 ? void 0 : _a.download();
|
|
25
|
-
_this.props.close();
|
|
26
|
-
};
|
|
27
|
-
_this.copy = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
|
|
28
|
-
var _a;
|
|
29
|
-
var _b;
|
|
30
|
-
return (0, tslib_1.__generator)(this, function (_c) {
|
|
31
|
-
switch (_c.label) {
|
|
32
|
-
case 0:
|
|
33
|
-
_c.trys.push([0, 2, , 3]);
|
|
34
|
-
return [4 /*yield*/, ((_b = this.plugin.helpers.viewportScreenshot) === null || _b === void 0 ? void 0 : _b.copyToClipboard())];
|
|
35
|
-
case 1:
|
|
36
|
-
_c.sent();
|
|
37
|
-
commands_1.PluginCommands.Toast.Show(this.plugin, {
|
|
38
|
-
message: 'Copied to clipboard.',
|
|
39
|
-
title: 'Screenshot',
|
|
40
|
-
timeoutMs: 1500
|
|
41
|
-
});
|
|
42
|
-
return [3 /*break*/, 3];
|
|
43
|
-
case 2:
|
|
44
|
-
_a = _c.sent();
|
|
45
|
-
return [2 /*return*/, this.copyImg()];
|
|
46
|
-
case 3: return [2 /*return*/];
|
|
47
|
-
}
|
|
48
|
-
});
|
|
49
|
-
}); };
|
|
50
|
-
_this.copyImg = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
|
|
51
|
-
var src;
|
|
52
|
-
var _a;
|
|
53
|
-
return (0, tslib_1.__generator)(this, function (_b) {
|
|
54
|
-
switch (_b.label) {
|
|
55
|
-
case 0: return [4 /*yield*/, ((_a = this.plugin.helpers.viewportScreenshot) === null || _a === void 0 ? void 0 : _a.getImageDataUri())];
|
|
56
|
-
case 1:
|
|
57
|
-
src = _b.sent();
|
|
58
|
-
this.setState({ imageData: src });
|
|
59
|
-
return [2 /*return*/];
|
|
60
|
-
}
|
|
61
|
-
});
|
|
62
|
-
}); };
|
|
63
|
-
_this.open = function (e) {
|
|
64
|
-
if (!e.target.files || !e.target.files[0])
|
|
65
|
-
return;
|
|
66
|
-
commands_1.PluginCommands.State.Snapshots.OpenFile(_this.plugin, { file: e.target.files[0] });
|
|
67
|
-
};
|
|
68
|
-
return _this;
|
|
69
|
-
}
|
|
70
|
-
DownloadScreenshotControls.prototype.componentDidMount = function () {
|
|
71
|
-
var _this = this;
|
|
72
|
-
this.subscribe(this.plugin.state.data.behaviors.isUpdating, function (v) {
|
|
73
|
-
_this.setState({ isDisabled: v });
|
|
74
|
-
});
|
|
75
|
-
};
|
|
76
|
-
DownloadScreenshotControls.prototype.componentWillUnmount = function () {
|
|
77
|
-
this.setState({ imageData: void 0 });
|
|
78
|
-
};
|
|
79
|
-
DownloadScreenshotControls.prototype.render = function () {
|
|
80
|
-
var _this = this;
|
|
81
|
-
var _a;
|
|
82
|
-
var hasClipboardApi = !!((_a = navigator.clipboard) === null || _a === void 0 ? void 0 : _a.write);
|
|
83
|
-
return (0, jsx_runtime_1.jsxs)("div", { children: [this.state.showPreview && (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-image-preview' }, { children: [(0, jsx_runtime_1.jsx)(screenshot_1.ScreenshotPreview, { plugin: this.plugin }, void 0), (0, jsx_runtime_1.jsx)(CropControls, { plugin: this.plugin }, void 0)] }), void 0), (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [!this.state.imageData && (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.CopySvg, onClick: hasClipboardApi ? this.copy : this.copyImg, disabled: this.state.isDisabled }, { children: "Copy" }), void 0), this.state.imageData && (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: function () { return _this.setState({ imageData: void 0 }); }, disabled: this.state.isDisabled }, { children: "Clear" }), void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.GetAppSvg, onClick: this.download, disabled: this.state.isDisabled }, { children: "Download" }), void 0)] }), void 0), this.state.imageData && (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-row msp-copy-image-wrapper' }, { children: [(0, jsx_runtime_1.jsx)("div", { children: "Right click below + Copy Image" }, void 0), (0, jsx_runtime_1.jsx)("img", { src: this.state.imageData, style: { width: '100%', height: 32, display: 'block' } }, void 0)] }), void 0), (0, jsx_runtime_1.jsx)(ScreenshotParams, { plugin: this.plugin, isDisabled: this.state.isDisabled }, void 0), (0, jsx_runtime_1.jsxs)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: 'State' }, { children: [(0, jsx_runtime_1.jsx)(snapshots_1.StateExportImportControls, { onAction: this.props.close }, void 0), (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: 'Save Options', initiallyExpanded: false, noOffset: true }, { children: (0, jsx_runtime_1.jsx)(snapshots_1.LocalStateSnapshotParams, {}, void 0) }), void 0)] }), void 0)] }, void 0);
|
|
84
|
-
};
|
|
85
|
-
return DownloadScreenshotControls;
|
|
86
|
-
}(base_1.PluginUIComponent));
|
|
87
|
-
exports.DownloadScreenshotControls = DownloadScreenshotControls;
|
|
88
|
-
function ScreenshotParams(_a) {
|
|
89
|
-
var plugin = _a.plugin, isDisabled = _a.isDisabled;
|
|
90
|
-
var helper = plugin.helpers.viewportScreenshot;
|
|
91
|
-
var values = (0, use_behavior_1.useBehavior)(helper.behaviors.values);
|
|
92
|
-
return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: helper.params, values: values, onChangeValues: function (v) { return helper.behaviors.values.next(v); }, isDisabled: isDisabled }, void 0);
|
|
93
|
-
}
|
|
94
|
-
function CropControls(_a) {
|
|
95
|
-
var plugin = _a.plugin;
|
|
96
|
-
var helper = plugin.helpers.viewportScreenshot;
|
|
97
|
-
var cropParams = (0, use_behavior_1.useBehavior)(helper === null || helper === void 0 ? void 0 : helper.behaviors.cropParams);
|
|
98
|
-
(0, use_behavior_1.useBehavior)(helper === null || helper === void 0 ? void 0 : helper.behaviors.relativeCrop);
|
|
99
|
-
if (!helper)
|
|
100
|
-
return null;
|
|
101
|
-
return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { width: '100%', height: '24px', marginTop: '8px' } }, { children: [(0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.CropOrginalSvg, title: 'Auto-crop', inline: true, isSelected: cropParams.auto, style: { background: 'transparent', float: 'left', width: 'auto', height: '24px', lineHeight: '24px' }, toggle: function () { return helper.toggleAutocrop(); }, label: 'Auto-crop ' + (cropParams.auto ? 'On' : 'Off') }, void 0), !cropParams.auto && (0, jsx_runtime_1.jsx)(common_1.Button, { icon: icons_1.CropSvg, title: 'Crop', style: { background: 'transparent', float: 'right', height: '24px', lineHeight: '24px', width: '24px', padding: '0' }, onClick: function () { return helper.autocrop(); } }, void 0), !cropParams.auto && !helper.isFullFrame && (0, jsx_runtime_1.jsx)(common_1.Button, { icon: icons_1.CropFreeSvg, title: 'Reset Crop', style: { background: 'transparent', float: 'right', height: '24px', lineHeight: '24px', width: '24px', padding: '0' }, onClick: function () { return helper.resetCrop(); } }, void 0)] }), void 0);
|
|
102
|
-
}
|
|
103
|
-
//# sourceMappingURL=screenshot.js.map
|
|
@@ -1,155 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.SimpleSettingsControl = void 0;
|
|
4
|
-
var tslib_1 = require("tslib");
|
|
5
|
-
var jsx_runtime_1 = require("react/jsx-runtime");
|
|
6
|
-
/**
|
|
7
|
-
* Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
8
|
-
*
|
|
9
|
-
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
10
|
-
* @author David Sehnal <david.sehnal@gmail.com>
|
|
11
|
-
*/
|
|
12
|
-
var immer_1 = require("immer");
|
|
13
|
-
var canvas3d_1 = require("../../mol-canvas3d/canvas3d");
|
|
14
|
-
var commands_1 = require("../../mol-plugin/commands");
|
|
15
|
-
var mol_state_1 = require("../../mol-state");
|
|
16
|
-
var color_1 = require("../../mol-util/color");
|
|
17
|
-
var param_definition_1 = require("../../mol-util/param-definition");
|
|
18
|
-
var param_mapping_1 = require("../../mol-util/param-mapping");
|
|
19
|
-
var base_1 = require("../base");
|
|
20
|
-
var parameters_1 = require("../controls/parameters");
|
|
21
|
-
var help_1 = require("./help");
|
|
22
|
-
var SimpleSettingsControl = /** @class */ (function (_super) {
|
|
23
|
-
(0, tslib_1.__extends)(SimpleSettingsControl, _super);
|
|
24
|
-
function SimpleSettingsControl() {
|
|
25
|
-
return _super !== null && _super.apply(this, arguments) || this;
|
|
26
|
-
}
|
|
27
|
-
SimpleSettingsControl.prototype.componentDidMount = function () {
|
|
28
|
-
var _this = this;
|
|
29
|
-
this.subscribe(this.plugin.events.canvas3d.settingsUpdated, function () { return _this.forceUpdate(); });
|
|
30
|
-
this.subscribe(this.plugin.canvas3d.camera.stateChanged, function (state) {
|
|
31
|
-
if (state.radiusMax !== undefined || state.radius !== undefined) {
|
|
32
|
-
_this.forceUpdate();
|
|
33
|
-
}
|
|
34
|
-
});
|
|
35
|
-
};
|
|
36
|
-
SimpleSettingsControl.prototype.render = function () {
|
|
37
|
-
if (!this.plugin.canvas3d)
|
|
38
|
-
return null;
|
|
39
|
-
return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterMappingControl, { mapping: SimpleSettingsMapping }, void 0), (0, jsx_runtime_1.jsx)(help_1.ViewportHelpContent, {}, void 0)] }, void 0);
|
|
40
|
-
};
|
|
41
|
-
return SimpleSettingsControl;
|
|
42
|
-
}(base_1.PluginUIComponent));
|
|
43
|
-
exports.SimpleSettingsControl = SimpleSettingsControl;
|
|
44
|
-
var LayoutOptions = {
|
|
45
|
-
'sequence': 'Sequence',
|
|
46
|
-
'log': 'Log',
|
|
47
|
-
'left': 'Left Panel'
|
|
48
|
-
};
|
|
49
|
-
var SimpleSettingsParams = {
|
|
50
|
-
animate: canvas3d_1.Canvas3DParams.trackball.params.animate,
|
|
51
|
-
camera: canvas3d_1.Canvas3DParams.camera,
|
|
52
|
-
background: param_definition_1.ParamDefinition.Group({
|
|
53
|
-
color: param_definition_1.ParamDefinition.Color((0, color_1.Color)(0xFCFBF9), { label: 'Background', description: 'Custom background color' }),
|
|
54
|
-
transparent: param_definition_1.ParamDefinition.Boolean(false)
|
|
55
|
-
}, { pivot: 'color' }),
|
|
56
|
-
lighting: param_definition_1.ParamDefinition.Group({
|
|
57
|
-
occlusion: canvas3d_1.Canvas3DParams.postprocessing.params.occlusion,
|
|
58
|
-
outline: canvas3d_1.Canvas3DParams.postprocessing.params.outline,
|
|
59
|
-
fog: canvas3d_1.Canvas3DParams.cameraFog,
|
|
60
|
-
}, { isFlat: true }),
|
|
61
|
-
clipping: param_definition_1.ParamDefinition.Group((0, tslib_1.__assign)({}, canvas3d_1.Canvas3DParams.cameraClipping.params), { pivot: 'radius' }),
|
|
62
|
-
layout: param_definition_1.ParamDefinition.MultiSelect([], param_definition_1.ParamDefinition.objectToOptions(LayoutOptions)),
|
|
63
|
-
};
|
|
64
|
-
var SimpleSettingsMapping = (0, param_mapping_1.ParamMapping)({
|
|
65
|
-
params: function (ctx) {
|
|
66
|
-
var _a;
|
|
67
|
-
var params = param_definition_1.ParamDefinition.clone(SimpleSettingsParams);
|
|
68
|
-
var controls = (_a = ctx.spec.components) === null || _a === void 0 ? void 0 : _a.controls;
|
|
69
|
-
if (controls) {
|
|
70
|
-
var options = [];
|
|
71
|
-
if (controls.top !== 'none')
|
|
72
|
-
options.push(['sequence', LayoutOptions.sequence]);
|
|
73
|
-
if (controls.bottom !== 'none')
|
|
74
|
-
options.push(['log', LayoutOptions.log]);
|
|
75
|
-
if (controls.left !== 'none')
|
|
76
|
-
options.push(['left', LayoutOptions.left]);
|
|
77
|
-
params.layout.options = options;
|
|
78
|
-
}
|
|
79
|
-
return params;
|
|
80
|
-
},
|
|
81
|
-
target: function (ctx) {
|
|
82
|
-
var _a, _b;
|
|
83
|
-
var c = (_a = ctx.spec.components) === null || _a === void 0 ? void 0 : _a.controls;
|
|
84
|
-
var r = ctx.layout.state.regionState;
|
|
85
|
-
var layout = [];
|
|
86
|
-
if (r.top !== 'hidden' && (!c || c.top !== 'none'))
|
|
87
|
-
layout.push('sequence');
|
|
88
|
-
if (r.bottom !== 'hidden' && (!c || c.bottom !== 'none'))
|
|
89
|
-
layout.push('log');
|
|
90
|
-
if (r.left !== 'hidden' && (!c || c.left !== 'none'))
|
|
91
|
-
layout.push('left');
|
|
92
|
-
return { canvas: (_b = ctx.canvas3d) === null || _b === void 0 ? void 0 : _b.props, layout: layout };
|
|
93
|
-
}
|
|
94
|
-
})({
|
|
95
|
-
values: function (props, ctx) {
|
|
96
|
-
var canvas = props.canvas;
|
|
97
|
-
var renderer = canvas.renderer;
|
|
98
|
-
return {
|
|
99
|
-
layout: props.layout,
|
|
100
|
-
animate: canvas.trackball.animate,
|
|
101
|
-
camera: canvas.camera,
|
|
102
|
-
background: {
|
|
103
|
-
color: renderer.backgroundColor,
|
|
104
|
-
transparent: canvas.transparentBackground
|
|
105
|
-
},
|
|
106
|
-
lighting: {
|
|
107
|
-
occlusion: canvas.postprocessing.occlusion,
|
|
108
|
-
outline: canvas.postprocessing.outline,
|
|
109
|
-
fog: canvas.cameraFog,
|
|
110
|
-
},
|
|
111
|
-
clipping: (0, tslib_1.__assign)({}, canvas.cameraClipping)
|
|
112
|
-
};
|
|
113
|
-
},
|
|
114
|
-
update: function (s, props) {
|
|
115
|
-
var canvas = props.canvas;
|
|
116
|
-
canvas.trackball.animate = s.animate;
|
|
117
|
-
canvas.camera = s.camera;
|
|
118
|
-
canvas.transparentBackground = s.background.transparent;
|
|
119
|
-
canvas.renderer.backgroundColor = s.background.color;
|
|
120
|
-
canvas.postprocessing.occlusion = s.lighting.occlusion;
|
|
121
|
-
canvas.postprocessing.outline = s.lighting.outline;
|
|
122
|
-
canvas.cameraFog = s.lighting.fog;
|
|
123
|
-
canvas.cameraClipping = {
|
|
124
|
-
radius: s.clipping.radius,
|
|
125
|
-
far: s.clipping.far,
|
|
126
|
-
};
|
|
127
|
-
props.layout = s.layout;
|
|
128
|
-
},
|
|
129
|
-
apply: function (props, ctx) {
|
|
130
|
-
return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
|
|
131
|
-
var hideLeft, state;
|
|
132
|
-
return (0, tslib_1.__generator)(this, function (_a) {
|
|
133
|
-
switch (_a.label) {
|
|
134
|
-
case 0: return [4 /*yield*/, commands_1.PluginCommands.Canvas3D.SetSettings(ctx, { settings: props.canvas })];
|
|
135
|
-
case 1:
|
|
136
|
-
_a.sent();
|
|
137
|
-
hideLeft = props.layout.indexOf('left') < 0;
|
|
138
|
-
state = (0, immer_1.produce)(ctx.layout.state, function (s) {
|
|
139
|
-
s.regionState.top = props.layout.indexOf('sequence') >= 0 ? 'full' : 'hidden';
|
|
140
|
-
s.regionState.bottom = props.layout.indexOf('log') >= 0 ? 'full' : 'hidden';
|
|
141
|
-
s.regionState.left = hideLeft ? 'hidden' : ctx.behaviors.layout.leftPanelTabName.value === 'none' ? 'collapsed' : 'full';
|
|
142
|
-
});
|
|
143
|
-
return [4 /*yield*/, commands_1.PluginCommands.Layout.Update(ctx, { state: state })];
|
|
144
|
-
case 2:
|
|
145
|
-
_a.sent();
|
|
146
|
-
if (hideLeft) {
|
|
147
|
-
commands_1.PluginCommands.State.SetCurrentObject(ctx, { state: ctx.state.data, ref: mol_state_1.StateTransform.RootRef });
|
|
148
|
-
}
|
|
149
|
-
return [2 /*return*/];
|
|
150
|
-
}
|
|
151
|
-
});
|
|
152
|
-
});
|
|
153
|
-
}
|
|
154
|
-
});
|
|
155
|
-
//# sourceMappingURL=simple-settings.js.map
|
|
@@ -1,83 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.Viewport = exports.Logo = exports.ViewportControls = void 0;
|
|
4
|
-
var tslib_1 = require("tslib");
|
|
5
|
-
var jsx_runtime_1 = require("react/jsx-runtime");
|
|
6
|
-
var commands_1 = require("../mol-plugin/commands");
|
|
7
|
-
var config_1 = require("../mol-plugin/config");
|
|
8
|
-
var base_1 = require("./base");
|
|
9
|
-
var common_1 = require("./controls/common");
|
|
10
|
-
var icons_1 = require("./controls/icons");
|
|
11
|
-
var selection_1 = require("./structure/selection");
|
|
12
|
-
var canvas_1 = require("./viewport/canvas");
|
|
13
|
-
var screenshot_1 = require("./viewport/screenshot");
|
|
14
|
-
var simple_settings_1 = require("./viewport/simple-settings");
|
|
15
|
-
var ViewportControls = /** @class */ (function (_super) {
|
|
16
|
-
(0, tslib_1.__extends)(ViewportControls, _super);
|
|
17
|
-
function ViewportControls() {
|
|
18
|
-
var _this = _super !== null && _super.apply(this, arguments) || this;
|
|
19
|
-
_this.allCollapsedState = {
|
|
20
|
-
isSettingsExpanded: false,
|
|
21
|
-
isScreenshotExpanded: false
|
|
22
|
-
};
|
|
23
|
-
_this.state = (0, tslib_1.__assign)({}, _this.allCollapsedState);
|
|
24
|
-
_this.resetCamera = function () {
|
|
25
|
-
commands_1.PluginCommands.Camera.Reset(_this.plugin, {});
|
|
26
|
-
};
|
|
27
|
-
_this.toggleSettingsExpanded = _this.toggle('isSettingsExpanded');
|
|
28
|
-
_this.toggleScreenshotExpanded = _this.toggle('isScreenshotExpanded');
|
|
29
|
-
_this.toggleControls = function () {
|
|
30
|
-
commands_1.PluginCommands.Layout.Update(_this.plugin, { state: { showControls: !_this.plugin.layout.state.showControls } });
|
|
31
|
-
};
|
|
32
|
-
_this.toggleExpanded = function () {
|
|
33
|
-
commands_1.PluginCommands.Layout.Update(_this.plugin, { state: { isExpanded: !_this.plugin.layout.state.isExpanded } });
|
|
34
|
-
};
|
|
35
|
-
_this.setSettings = function (p) {
|
|
36
|
-
var _a;
|
|
37
|
-
commands_1.PluginCommands.Canvas3D.SetSettings(_this.plugin, { settings: (_a = {}, _a[p.name] = p.value, _a) });
|
|
38
|
-
};
|
|
39
|
-
_this.setLayout = function (p) {
|
|
40
|
-
var _a;
|
|
41
|
-
commands_1.PluginCommands.Layout.Update(_this.plugin, { state: (_a = {}, _a[p.name] = p.value, _a) });
|
|
42
|
-
};
|
|
43
|
-
_this.screenshot = function () {
|
|
44
|
-
var _a;
|
|
45
|
-
(_a = _this.plugin.helpers.viewportScreenshot) === null || _a === void 0 ? void 0 : _a.download();
|
|
46
|
-
};
|
|
47
|
-
_this.onMouseMove = function (e) {
|
|
48
|
-
// ignore mouse moves when no button is held
|
|
49
|
-
if (e.buttons === 0)
|
|
50
|
-
e.stopPropagation();
|
|
51
|
-
};
|
|
52
|
-
return _this;
|
|
53
|
-
}
|
|
54
|
-
ViewportControls.prototype.toggle = function (panel) {
|
|
55
|
-
var _this = this;
|
|
56
|
-
return function (e) {
|
|
57
|
-
var _a;
|
|
58
|
-
_this.setState((0, tslib_1.__assign)((0, tslib_1.__assign)({}, _this.allCollapsedState), (_a = {}, _a[panel] = !_this.state[panel], _a)));
|
|
59
|
-
e === null || e === void 0 ? void 0 : e.currentTarget.blur();
|
|
60
|
-
};
|
|
61
|
-
};
|
|
62
|
-
ViewportControls.prototype.componentDidMount = function () {
|
|
63
|
-
var _this = this;
|
|
64
|
-
this.subscribe(this.plugin.events.canvas3d.settingsUpdated, function () { return _this.forceUpdate(); });
|
|
65
|
-
this.subscribe(this.plugin.layout.events.updated, function () { return _this.forceUpdate(); });
|
|
66
|
-
};
|
|
67
|
-
ViewportControls.prototype.icon = function (icon, onClick, title, isOn) {
|
|
68
|
-
if (isOn === void 0) { isOn = true; }
|
|
69
|
-
return (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icon, toggleState: isOn, onClick: onClick, title: title, style: { background: 'transparent' } }, void 0);
|
|
70
|
-
};
|
|
71
|
-
ViewportControls.prototype.render = function () {
|
|
72
|
-
return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls', onMouseMove: this.onMouseMove }, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls-buttons' }, { children: [(0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), this.icon(icons_1.AutorenewSvg, this.resetCamera, 'Reset Camera')] }, void 0), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), this.icon(icons_1.CameraOutlinedSvg, this.toggleScreenshotExpanded, 'Screenshot / State Snapshot', this.state.isScreenshotExpanded)] }, void 0), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowControls) && this.icon(icons_1.BuildOutlinedSvg, this.toggleControls, 'Toggle Controls Panel', this.plugin.layout.state.showControls), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowExpand) && this.icon(icons_1.FullscreenSvg, this.toggleExpanded, 'Toggle Expanded Viewport', this.plugin.layout.state.isExpanded), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSettings) && this.icon(icons_1.TuneSvg, this.toggleSettingsExpanded, 'Settings / Controls Info', this.state.isSettingsExpanded)] }, void 0), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSelectionMode) && (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), (0, jsx_runtime_1.jsx)(selection_1.ToggleSelectionModeButton, {}, void 0)] }, void 0)] }), void 0), this.state.isScreenshotExpanded && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, (0, tslib_1.__assign)({ header: 'Screenshot / State', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleScreenshotExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(screenshot_1.DownloadScreenshotControls, { close: this.toggleScreenshotExpanded }, void 0) }), void 0) }), void 0), this.state.isSettingsExpanded && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, (0, tslib_1.__assign)({ header: 'Settings / Controls Info', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleSettingsExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(simple_settings_1.SimpleSettingsControl, {}, void 0) }), void 0) }), void 0)] }), void 0);
|
|
73
|
-
};
|
|
74
|
-
return ViewportControls;
|
|
75
|
-
}(base_1.PluginUIComponent));
|
|
76
|
-
exports.ViewportControls = ViewportControls;
|
|
77
|
-
var Logo = function () {
|
|
78
|
-
return (0, jsx_runtime_1.jsx)("a", { className: 'msp-logo', href: 'https://molstar.org', target: '_blank' }, void 0);
|
|
79
|
-
};
|
|
80
|
-
exports.Logo = Logo;
|
|
81
|
-
var Viewport = function () { return (0, jsx_runtime_1.jsx)(canvas_1.ViewportCanvas, { logo: exports.Logo }, void 0); };
|
|
82
|
-
exports.Viewport = Viewport;
|
|
83
|
-
//# sourceMappingURL=viewport.js.map
|