molstar 3.0.0 → 3.0.1

package/lib/commonjs/extensions/model-export/export.js

@@ -1,129 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.exportHierarchy = void 0;
-var tslib_1 = require("tslib");
-var utf8_1 = require("../../mol-io/common/utf8");
-var structure_1 = require("../../mol-model/structure");
-var mol_task_1 = require("../../mol-task");
-var date_1 = require("../../mol-util/date");
-var download_1 = require("../../mol-util/download");
-var zip_1 = require("../../mol-util/zip/zip");
-function exportHierarchy(plugin, options) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        var e_1;
-        return (0, tslib_1.__generator)(this, function (_a) {
-            switch (_a.label) {
-                case 0:
-                    _a.trys.push([0, 2, , 3]);
-                    return [4 /*yield*/, plugin.runTask(_exportHierarchy(plugin, options), { useOverlay: true })];
-                case 1:
-                    _a.sent();
-                    return [3 /*break*/, 3];
-                case 2:
-                    e_1 = _a.sent();
-                    console.error(e_1);
-                    plugin.log.error("Model export failed. See console for details.");
-                    return [3 /*break*/, 3];
-                case 3: return [2 /*return*/];
-            }
-        });
-    });
-}
-exports.exportHierarchy = exportHierarchy;
-function _exportHierarchy(plugin, options) {
-    var _this = this;
-    return mol_task_1.Task.create('Export', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        var format, structures, files, entryMap, _i, structures_1, _s, s, name_1, zipData, _a, files_1, _b, fn, data, bytes, buffer;
-        var _c, _d, _e, _f, _g, _h, _j, _k;
-        return (0, tslib_1.__generator)(this, function (_l) {
-            switch (_l.label) {
-                case 0: return [4 /*yield*/, ctx.update({ message: 'Exporting...', isIndeterminate: true, canAbort: false })];
-                case 1:
-                    _l.sent();
-                    format = (_c = options === null || options === void 0 ? void 0 : options.format) !== null && _c !== void 0 ? _c : 'cif';
-                    structures = plugin.managers.structure.hierarchy.current.structures;
-                    files = [];
-                    entryMap = new Map();
-                    _i = 0, structures_1 = structures;
-                    _l.label = 2;
-                case 2:
-                    if (!(_i < structures_1.length)) return [3 /*break*/, 7];
-                    _s = structures_1[_i];
-                    s = (_f = (_e = (_d = _s.transform) === null || _d === void 0 ? void 0 : _d.cell.obj) === null || _e === void 0 ? void 0 : _e.data) !== null && _f !== void 0 ? _f : (_g = _s.cell.obj) === null || _g === void 0 ? void 0 : _g.data;
-                    if (!s)
-                        return [3 /*break*/, 6];
-                    if (s.models.length > 1) {
-                        plugin.log.warn("[Export] Skipping ".concat((_h = _s.cell.obj) === null || _h === void 0 ? void 0 : _h.label, ": Multimodel exports not supported."));
-                        return [3 /*break*/, 6];
-                    }
-                    if (s.units.some(function (u) { return !structure_1.Unit.isAtomic(u); })) {
-                        plugin.log.warn("[Export] Skipping ".concat((_j = _s.cell.obj) === null || _j === void 0 ? void 0 : _j.label, ": Non-atomic model exports not supported."));
-                        return [3 /*break*/, 6];
-                    }
-                    name_1 = entryMap.has(s.model.entryId)
-                        ? "".concat(s.model.entryId, "_").concat(entryMap.get(s.model.entryId) + 1, ".").concat(format)
-                        : "".concat(s.model.entryId, ".").concat(format);
-                    entryMap.set(s.model.entryId, ((_k = entryMap.get(s.model.entryId)) !== null && _k !== void 0 ? _k : 0) + 1);
-                    return [4 /*yield*/, ctx.update({ message: "Exporting ".concat(s.model.entryId, "..."), isIndeterminate: true, canAbort: false })];
-                case 3:
-                    _l.sent();
-                    if (!(s.elementCount > 100000)) return [3 /*break*/, 5];
-                    // Give UI chance to update, only needed for larger structures.
-                    return [4 /*yield*/, new Promise(function (res) { return setTimeout(res, 50); })];
-                case 4:
-                    // Give UI chance to update, only needed for larger structures.
-                    _l.sent();
-                    _l.label = 5;
-                case 5:
-                    try {
-                        files.push([name_1, (0, structure_1.to_mmCIF)(s.model.entryId, s, format === 'bcif', { copyAllCategories: true })]);
-                    }
-                    catch (e) {
-                        if (format === 'cif' && s.elementCount > 2000000) {
-                            plugin.log.warn("[Export] The structure might be too big to be exported as Text CIF, consider using the BinaryCIF format instead.");
-                        }
-                        throw e;
-                    }
-                    _l.label = 6;
-                case 6:
-                    _i++;
-                    return [3 /*break*/, 2];
-                case 7:
-                    if (!(files.length === 1)) return [3 /*break*/, 8];
-                    (0, download_1.download)(new Blob([files[0][1]]), files[0][0]);
-                    return [3 /*break*/, 11];
-                case 8:
-                    if (!(files.length > 1)) return [3 /*break*/, 11];
-                    zipData = {};
-                    for (_a = 0, files_1 = files; _a < files_1.length; _a++) {
-                        _b = files_1[_a], fn = _b[0], data = _b[1];
-                        if (data instanceof Uint8Array) {
-                            zipData[fn] = data;
-                        }
-                        else {
-                            bytes = new Uint8Array((0, utf8_1.utf8ByteCount)(data));
-                            (0, utf8_1.utf8Write)(bytes, 0, data);
-                            zipData[fn] = bytes;
-                        }
-                    }
-                    return [4 /*yield*/, ctx.update({ message: "Compressing Data...", isIndeterminate: true, canAbort: false })];
-                case 9:
-                    _l.sent();
-                    return [4 /*yield*/, (0, zip_1.zip)(ctx, zipData)];
-                case 10:
-                    buffer = _l.sent();
-                    (0, download_1.download)(new Blob([new Uint8Array(buffer, 0, buffer.byteLength)]), "structures_".concat((0, date_1.getFormattedTime)(), ".zip"));
-                    _l.label = 11;
-                case 11:
-                    plugin.log.info("[Export] Done.");
-                    return [2 /*return*/];
-            }
-        });
-    }); });
-}
-//# sourceMappingURL=export.js.map

package/lib/commonjs/extensions/model-export/index.js

@@ -1,36 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ModelExport = void 0;
-var tslib_1 = require("tslib");
-var behavior_1 = require("../../mol-plugin/behavior/behavior");
-var ui_1 = require("./ui");
-exports.ModelExport = behavior_1.PluginBehavior.create({
-    name: 'extension-model-export',
-    category: 'misc',
-    display: {
-        name: 'Model Export'
-    },
-    ctor: /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(class_1, _super);
-        function class_1() {
-            return _super !== null && _super.apply(this, arguments) || this;
-        }
-        class_1.prototype.register = function () {
-            this.ctx.customStructureControls.set('model-export', ui_1.ModelExportUI);
-        };
-        class_1.prototype.update = function () {
-            return false;
-        };
-        class_1.prototype.unregister = function () {
-            this.ctx.customStructureControls.delete('model-export');
-        };
-        return class_1;
-    }(behavior_1.PluginBehavior.Handler)),
-    params: function () { return ({}); }
-});
-//# sourceMappingURL=index.js.map

package/lib/commonjs/extensions/model-export/ui.js

@@ -1,77 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ModelExportUI = void 0;
-var tslib_1 = require("tslib");
-var jsx_runtime_1 = require("react/jsx-runtime");
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-var react_1 = require("react");
-var base_1 = require("../../mol-plugin-ui/base");
-var common_1 = require("../../mol-plugin-ui/controls/common");
-var icons_1 = require("../../mol-plugin-ui/controls/icons");
-var parameters_1 = require("../../mol-plugin-ui/controls/parameters");
-var use_behavior_1 = require("../../mol-plugin-ui/hooks/use-behavior");
-var param_definition_1 = require("../../mol-util/param-definition");
-var export_1 = require("./export");
-var ModelExportUI = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(ModelExportUI, _super);
-    function ModelExportUI() {
-        return _super !== null && _super.apply(this, arguments) || this;
-    }
-    ModelExportUI.prototype.defaultState = function () {
-        return {
-            header: 'Export Models',
-            isCollapsed: true,
-            brand: { accent: 'cyan', svg: icons_1.GetAppSvg }
-        };
-    };
-    ModelExportUI.prototype.renderControls = function () {
-        return (0, jsx_runtime_1.jsx)(ExportControls, { plugin: this.plugin }, void 0);
-    };
-    return ModelExportUI;
-}(base_1.CollapsableControls));
-exports.ModelExportUI = ModelExportUI;
-var Params = {
-    format: param_definition_1.ParamDefinition.Select('cif', [['cif', 'mmCIF'], ['bcif', 'Binary mmCIF']])
-};
-var DefaultParams = param_definition_1.ParamDefinition.getDefaultValues(Params);
-function ExportControls(_a) {
-    var _this = this;
-    var plugin = _a.plugin;
-    var _b = (0, react_1.useState)(DefaultParams), params = _b[0], setParams = _b[1];
-    var _c = (0, react_1.useState)(false), exporting = _c[0], setExporting = _c[1];
-    (0, use_behavior_1.useBehavior)(plugin.managers.structure.hierarchy.behaviors.selection); // triggers UI update
-    var isBusy = (0, use_behavior_1.useBehavior)(plugin.behaviors.state.isBusy);
-    var hierarchy = plugin.managers.structure.hierarchy.current;
-    var label = 'Nothing to Export';
-    if (hierarchy.structures.length === 1) {
-        label = 'Export';
-    }
-    if (hierarchy.structures.length > 1) {
-        label = 'Export (as ZIP)';
-    }
-    var onExport = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
-            switch (_a.label) {
-                case 0:
-                    setExporting(true);
-                    _a.label = 1;
-                case 1:
-                    _a.trys.push([1, , 3, 4]);
-                    return [4 /*yield*/, (0, export_1.exportHierarchy)(plugin, { format: params.format })];
-                case 2:
-                    _a.sent();
-                    return [3 /*break*/, 4];
-                case 3:
-                    setExporting(false);
-                    return [7 /*endfinally*/];
-                case 4: return [2 /*return*/];
-            }
-        });
-    }); };
-    return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: Params, values: params, onChangeValues: setParams, isDisabled: isBusy || exporting }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: onExport, style: { marginTop: 1 }, disabled: isBusy || hierarchy.structures.length === 0 || exporting, commit: hierarchy.structures.length ? 'on' : 'off' }, { children: label }), void 0)] }, void 0);
-}
-//# sourceMappingURL=ui.js.map

package/lib/commonjs/extensions/mp4-export/controls.js

@@ -1,142 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.Mp4Controls = exports.Mp4AnimationParams = void 0;
-var tslib_1 = require("tslib");
-var operators_1 = require("rxjs/operators");
-var component_1 = require("../../mol-plugin-state/component");
-var mol_task_1 = require("../../mol-task");
-var param_definition_1 = require("../../mol-util/param-definition");
-var encoder_1 = require("./encoder");
-exports.Mp4AnimationParams = {
-    quantization: param_definition_1.ParamDefinition.Numeric(18, { min: 10, max: 51 }, { description: 'Lower is better, but slower.' })
-};
-var Mp4Controls = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(Mp4Controls, _super);
-    function Mp4Controls(plugin) {
-        var _this = _super.call(this) || this;
-        _this.plugin = plugin;
-        _this.currentNames = new Set();
-        _this.animations = [];
-        _this.behaviors = {
-            animations: _this.ev.behavior({}),
-            current: _this.ev.behavior(void 0),
-            canApply: _this.ev.behavior({ canApply: false }),
-            info: _this.ev.behavior({ width: 0, height: 0 }),
-            params: _this.ev.behavior(param_definition_1.ParamDefinition.getDefaultValues(exports.Mp4AnimationParams))
-        };
-        _this.init();
-        return _this;
-    }
-    Mp4Controls.prototype.setCurrent = function (name) {
-        var _a, _b;
-        var anim = this.animations.find(function (a) { return a.name === name; });
-        if (!anim) {
-            this.behaviors.current.next(anim);
-            return;
-        }
-        var params = anim.params(this.plugin);
-        var values = param_definition_1.ParamDefinition.getDefaultValues(params);
-        this.behaviors.current.next({ anim: anim, params: params, values: values });
-        this.behaviors.canApply.next((_b = (_a = anim.canApply) === null || _a === void 0 ? void 0 : _a.call(anim, this.plugin)) !== null && _b !== void 0 ? _b : { canApply: true });
-    };
-    Mp4Controls.prototype.setCurrentParams = function (values) {
-        this.behaviors.current.next((0, tslib_1.__assign)((0, tslib_1.__assign)({}, this.behaviors.current.value), { values: values }));
-    };
-    Object.defineProperty(Mp4Controls.prototype, "current", {
-        get: function () {
-            return this.behaviors.current.value;
-        },
-        enumerable: false,
-        configurable: true
-    });
-    Mp4Controls.prototype.render = function () {
-        var _this = this;
-        var task = mol_task_1.Task.create('Export Animation', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-            var resolution, anim, movie, filename, e_1;
-            var _a, _b, _c;
-            return (0, tslib_1.__generator)(this, function (_d) {
-                switch (_d.label) {
-                    case 0:
-                        _d.trys.push([0, 2, , 3]);
-                        resolution = (_a = this.plugin.helpers.viewportScreenshot) === null || _a === void 0 ? void 0 : _a.getSizeAndViewport();
-                        anim = this.current;
-                        return [4 /*yield*/, (0, encoder_1.encodeMp4Animation)(this.plugin, ctx, (0, tslib_1.__assign)((0, tslib_1.__assign)({ animation: {
-                                    definition: anim.anim,
-                                    params: anim.values,
-                                } }, resolution), { quantizationParameter: this.behaviors.params.value.quantization, pass: (_b = this.plugin.helpers.viewportScreenshot) === null || _b === void 0 ? void 0 : _b.imagePass }))];
-                    case 1:
-                        movie = _d.sent();
-                        filename = anim.anim.display.name.toLowerCase().replace(/\s/g, '-').replace(/[^a-z0-9_\-]/g, '');
-                        return [2 /*return*/, { movie: movie, filename: "".concat((_c = this.plugin.helpers.viewportScreenshot) === null || _c === void 0 ? void 0 : _c.getFilename(''), "_").concat(filename, ".mp4") }];
-                    case 2:
-                        e_1 = _d.sent();
-                        this.plugin.log.error('Error during animation export');
-                        throw e_1;
-                    case 3: return [2 /*return*/];
-                }
-            });
-        }); });
-        return this.plugin.runTask(task, { useOverlay: true });
-    };
-    Object.defineProperty(Mp4Controls.prototype, "manager", {
-        get: function () {
-            return this.plugin.managers.animation;
-        },
-        enumerable: false,
-        configurable: true
-    });
-    Mp4Controls.prototype.syncInfo = function () {
-        var helper = this.plugin.helpers.viewportScreenshot;
-        var size = helper === null || helper === void 0 ? void 0 : helper.getSizeAndViewport();
-        if (!size)
-            return;
-        this.behaviors.info.next({ width: size.viewport.width, height: size.viewport.height });
-    };
-    Mp4Controls.prototype.sync = function () {
-        var _this = this;
-        var _a, _b;
-        var animations = this.manager.animations.filter(function (a) { return a.isExportable; });
-        var hasAll = animations.every(function (a) { return _this.currentNames.has(a.name); });
-        if (hasAll && this.currentNames.size === animations.length) {
-            return;
-        }
-        var params = {
-            current: param_definition_1.ParamDefinition.Select((_a = animations[0]) === null || _a === void 0 ? void 0 : _a.name, animations.map(function (a) { return [a.name, a.display.name]; }), { label: 'Animation' })
-        };
-        var current = this.behaviors.current.value;
-        var hasCurrent = !!animations.find(function (a) { return a.name === (current === null || current === void 0 ? void 0 : current.anim.name); });
-        this.animations = animations;
-        if (!hasCurrent) {
-            this.setCurrent((_b = animations[0]) === null || _b === void 0 ? void 0 : _b.name);
-        }
-        this.behaviors.animations.next(params);
-    };
-    Mp4Controls.prototype.init = function () {
-        var _this = this;
-        var _a, _b;
-        this.subscribe(this.plugin.managers.animation.events.updated.pipe((0, operators_1.debounceTime)(16)), function () {
-            _this.sync();
-        });
-        this.subscribe((_a = this.plugin.canvas3d) === null || _a === void 0 ? void 0 : _a.resized, function () { return _this.syncInfo(); });
-        this.subscribe((_b = this.plugin.helpers.viewportScreenshot) === null || _b === void 0 ? void 0 : _b.events.previewed, function () { return _this.syncInfo(); });
-        this.subscribe(this.plugin.behaviors.state.isBusy, function (b) { return _this.updateCanApply(b); });
-        this.subscribe(this.plugin.managers.snapshot.events.changed, function (b) { return _this.updateCanApply(b); });
-        this.sync();
-        this.syncInfo();
-    };
-    Mp4Controls.prototype.updateCanApply = function (b) {
-        var _a, _b, _c;
-        var anim = this.current;
-        if (!b && anim) {
-            this.behaviors.canApply.next((_c = (_b = (_a = anim.anim).canApply) === null || _b === void 0 ? void 0 : _b.call(_a, this.plugin)) !== null && _c !== void 0 ? _c : { canApply: true });
-        }
-    };
-    return Mp4Controls;
-}(component_1.PluginComponent));
-exports.Mp4Controls = Mp4Controls;
-//# sourceMappingURL=controls.js.map

package/lib/commonjs/extensions/mp4-export/encoder.js

@@ -1,119 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.encodeMp4Animation = void 0;
-var tslib_1 = require("tslib");
-var HME = (0, tslib_1.__importStar)(require("h264-mp4-encoder"));
-var model_1 = require("../../mol-plugin-state/animation/model");
-function encodeMp4Animation(plugin, ctx, params) {
-    var _a, _b, _c;
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        var durationMs, encoder, width, height, vw, vh, normalizedViewport, loop, canvasProps, wasAnimating, stoppedAnimation, finalized, fps, N, dt, i, image;
-        return (0, tslib_1.__generator)(this, function (_d) {
-            switch (_d.label) {
-                case 0: return [4 /*yield*/, ctx.update({ message: 'Initializing...', isIndeterminate: true })];
-                case 1:
-                    _d.sent();
-                    validateViewport(params);
-                    durationMs = model_1.PluginStateAnimation.getDuration(plugin, params.animation);
-                    if (durationMs === void 0) {
-                        throw new Error('The animation does not have the duration specified.');
-                    }
-                    return [4 /*yield*/, HME.createH264MP4Encoder()];
-                case 2:
-                    encoder = _d.sent();
-                    width = params.width, height = params.height;
-                    vw = params.viewport.width, vh = params.viewport.height;
-                    // dimensions must be a multiple of 2
-                    if (vw % 2 !== 0)
-                        vw -= 1;
-                    if (vh % 2 !== 0)
-                        vh -= 1;
-                    normalizedViewport = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params.viewport), { width: vw, height: vh });
-                    encoder.width = vw;
-                    encoder.height = vh;
-                    if (params.quantizationParameter)
-                        encoder.quantizationParameter = params.quantizationParameter;
-                    if (params.fps)
-                        encoder.frameRate = params.fps;
-                    encoder.initialize();
-                    loop = plugin.animationLoop;
-                    canvasProps = (_a = plugin.canvas3d) === null || _a === void 0 ? void 0 : _a.props;
-                    wasAnimating = loop.isAnimating;
-                    stoppedAnimation = true, finalized = false;
-                    _d.label = 3;
-                case 3:
-                    _d.trys.push([3, , 13, 16]);
-                    loop.stop();
-                    loop.resetTime(0);
-                    if (params.customBackground !== void 0) {
-                        (_b = plugin.canvas3d) === null || _b === void 0 ? void 0 : _b.setProps({ renderer: { backgroundColor: params.customBackground }, transparentBackground: false }, true);
-                    }
-                    fps = encoder.frameRate;
-                    N = Math.ceil(durationMs / 1000 * fps);
-                    dt = durationMs / N;
-                    return [4 /*yield*/, ctx.update({ message: 'Rendering...', isIndeterminate: false, current: 0, max: N + 1 })];
-                case 4:
-                    _d.sent();
-                    return [4 /*yield*/, plugin.managers.animation.play(params.animation.definition, params.animation.params)];
-                case 5:
-                    _d.sent();
-                    stoppedAnimation = false;
-                    i = 0;
-                    _d.label = 6;
-                case 6:
-                    if (!(i <= N)) return [3 /*break*/, 10];
-                    return [4 /*yield*/, loop.tick(i * dt, { isSynchronous: true, animation: { currentFrame: i, frameCount: N }, manualDraw: true })];
-                case 7:
-                    _d.sent();
-                    image = params.pass.getImageData(width, height, normalizedViewport);
-                    encoder.addFrameRgba(image.data);
-                    if (!ctx.shouldUpdate) return [3 /*break*/, 9];
-                    return [4 /*yield*/, ctx.update({ current: i + 1 })];
-                case 8:
-                    _d.sent();
-                    _d.label = 9;
-                case 9:
-                    i++;
-                    return [3 /*break*/, 6];
-                case 10: return [4 /*yield*/, ctx.update({ message: 'Applying finishing touches...', isIndeterminate: true })];
-                case 11:
-                    _d.sent();
-                    return [4 /*yield*/, plugin.managers.animation.stop()];
-                case 12:
-                    _d.sent();
-                    stoppedAnimation = true;
-                    encoder.finalize();
-                    finalized = true;
-                    return [2 /*return*/, encoder.FS.readFile(encoder.outputFilename)];
-                case 13:
-                    if (finalized)
-                        encoder.delete();
-                    if (params.customBackground !== void 0) {
-                        (_c = plugin.canvas3d) === null || _c === void 0 ? void 0 : _c.setProps({ renderer: { backgroundColor: canvasProps === null || canvasProps === void 0 ? void 0 : canvasProps.renderer.backgroundColor }, transparentBackground: canvasProps === null || canvasProps === void 0 ? void 0 : canvasProps.transparentBackground });
-                    }
-                    if (!!stoppedAnimation) return [3 /*break*/, 15];
-                    return [4 /*yield*/, plugin.managers.animation.stop()];
-                case 14:
-                    _d.sent();
-                    _d.label = 15;
-                case 15:
-                    if (wasAnimating)
-                        loop.start();
-                    return [7 /*endfinally*/];
-                case 16: return [2 /*return*/];
-            }
-        });
-    });
-}
-exports.encodeMp4Animation = encodeMp4Animation;
-function validateViewport(params) {
-    if (params.viewport.x + params.viewport.width > params.width || params.viewport.y + params.viewport.height > params.height) {
-        throw new Error('Viewport exceeds the canvas dimensions.');
-    }
-}
-//# sourceMappingURL=encoder.js.map

package/lib/commonjs/extensions/mp4-export/index.js

@@ -1,36 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.Mp4Export = void 0;
-var tslib_1 = require("tslib");
-var behavior_1 = require("../../mol-plugin/behavior/behavior");
-var ui_1 = require("./ui");
-exports.Mp4Export = behavior_1.PluginBehavior.create({
-    name: 'extension-mp4-export',
-    category: 'misc',
-    display: {
-        name: 'MP4 Animation Export'
-    },
-    ctor: /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(class_1, _super);
-        function class_1() {
-            return _super !== null && _super.apply(this, arguments) || this;
-        }
-        class_1.prototype.register = function () {
-            this.ctx.customStructureControls.set('mp4-export', ui_1.Mp4EncoderUI);
-        };
-        class_1.prototype.update = function () {
-            return false;
-        };
-        class_1.prototype.unregister = function () {
-            this.ctx.customStructureControls.delete('mp4-export');
-        };
-        return class_1;
-    }(behavior_1.PluginBehavior.Handler)),
-    params: function () { return ({}); }
-});
-//# sourceMappingURL=index.js.map

package/lib/commonjs/extensions/mp4-export/ui.js

@@ -1,94 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.Mp4EncoderUI = void 0;
-var tslib_1 = require("tslib");
-var jsx_runtime_1 = require("react/jsx-runtime");
-/**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- */
-var rxjs_1 = require("rxjs");
-var operators_1 = require("rxjs/operators");
-var base_1 = require("../../mol-plugin-ui/base");
-var common_1 = require("../../mol-plugin-ui/controls/common");
-var icons_1 = require("../../mol-plugin-ui/controls/icons");
-var parameters_1 = require("../../mol-plugin-ui/controls/parameters");
-var download_1 = require("../../mol-util/download");
-var controls_1 = require("./controls");
-var Mp4EncoderUI = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(Mp4EncoderUI, _super);
-    function Mp4EncoderUI() {
-        var _this = _super !== null && _super.apply(this, arguments) || this;
-        _this.save = function () {
-            (0, download_1.download)(new Blob([_this.state.data.movie]), _this.state.data.filename);
-        };
-        _this.generate = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-            var data, e_1;
-            return (0, tslib_1.__generator)(this, function (_a) {
-                switch (_a.label) {
-                    case 0:
-                        _a.trys.push([0, 2, , 3]);
-                        this.setState({ busy: true });
-                        return [4 /*yield*/, this.controls.render()];
-                    case 1:
-                        data = _a.sent();
-                        this.setState({ busy: false, data: data });
-                        return [3 /*break*/, 3];
-                    case 2:
-                        e_1 = _a.sent();
-                        console.error(e_1);
-                        this.setState({ busy: false });
-                        return [3 /*break*/, 3];
-                    case 3: return [2 /*return*/];
-                }
-            });
-        }); };
-        return _this;
-    }
-    Object.defineProperty(Mp4EncoderUI.prototype, "controls", {
-        get: function () {
-            return this._controls || (this._controls = new controls_1.Mp4Controls(this.plugin));
-        },
-        enumerable: false,
-        configurable: true
-    });
-    Mp4EncoderUI.prototype.defaultState = function () {
-        return {
-            header: 'Export Animation',
-            isCollapsed: true,
-            brand: { accent: 'cyan', svg: icons_1.SubscriptionsOutlinedSvg }
-        };
-    };
-    Mp4EncoderUI.prototype.downloadControls = function () {
-        var _this = this;
-        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset msp-help-text' }, { children: (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-help-description', style: { textAlign: 'center' } }, { children: "Rendering successful!" }), void 0) }), void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.GetAppSvg, onClick: this.save, style: { marginTop: 1 } }, { children: "Save Animation" }), void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: function () { return _this.setState({ data: void 0 }); }, style: { marginTop: 6 } }, { children: "Clear" }), void 0)] }, void 0);
-    };
-    Mp4EncoderUI.prototype.renderControls = function () {
-        var _a;
-        if (this.state.data) {
-            return this.downloadControls();
-        }
-        var ctrl = this.controls;
-        var current = ctrl.behaviors.current.value;
-        var info = ctrl.behaviors.info.value;
-        var canApply = ctrl.behaviors.canApply.value;
-        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: ctrl.behaviors.animations.value, values: { current: current === null || current === void 0 ? void 0 : current.anim.name }, onChangeValues: function (xs) { return ctrl.setCurrent(xs.current); }, isDisabled: this.state.busy }, void 0), current && (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: current.params, values: current.values, onChangeValues: function (xs) { return ctrl.setCurrentParams(xs); }, isDisabled: this.state.busy }, void 0), (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset msp-help-text' }, { children: (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-help-description', style: { textAlign: 'center' } }, { children: ["Resolution: ", info.width, "x", info.height, (0, jsx_runtime_1.jsx)("br", {}, void 0), "Adjust in viewport using ", (0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.CameraOutlinedSvg, inline: true }, void 0)] }), void 0) }), void 0), (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: controls_1.Mp4AnimationParams, values: ctrl.behaviors.params.value, onChangeValues: function (xs) { return ctrl.behaviors.params.next(xs); }, isDisabled: this.state.busy }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: this.generate, style: { marginTop: 1 }, disabled: this.state.busy || !canApply.canApply, commit: canApply.canApply ? 'on' : 'off' }, { children: canApply.canApply ? 'Render' : (_a = canApply.reason) !== null && _a !== void 0 ? _a : 'Invalid params/state' }), void 0)] }, void 0);
-    };
-    Mp4EncoderUI.prototype.componentDidMount = function () {
-        var _this = this;
-        var merged = (0, rxjs_1.merge)(this.controls.behaviors.animations, this.controls.behaviors.current, this.controls.behaviors.canApply, this.controls.behaviors.info, this.controls.behaviors.params);
-        this.subscribe(merged.pipe((0, operators_1.debounceTime)(10)), function () {
-            if (!_this.state.isCollapsed)
-                _this.forceUpdate();
-        });
-    };
-    Mp4EncoderUI.prototype.componentWillUnmount = function () {
-        var _a;
-        (_a = this._controls) === null || _a === void 0 ? void 0 : _a.dispose();
-        this._controls = void 0;
-    };
-    return Mp4EncoderUI;
-}(base_1.CollapsableControls));
-exports.Mp4EncoderUI = Mp4EncoderUI;
-//# sourceMappingURL=ui.js.map

package/lib/commonjs/extensions/pdbe/index.js

@@ -1,15 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.PDBeStructRefDomain = exports.PDBePreferredAssembly = exports.PDBeStructureQualityReport = void 0;
-var behavior_1 = require("./structure-quality-report/behavior");
-Object.defineProperty(exports, "PDBeStructureQualityReport", { enumerable: true, get: function () { return behavior_1.PDBeStructureQualityReport; } });
-var preferred_assembly_1 = require("./preferred-assembly");
-Object.defineProperty(exports, "PDBePreferredAssembly", { enumerable: true, get: function () { return preferred_assembly_1.PDBePreferredAssembly; } });
-var struct_ref_domain_1 = require("./struct-ref-domain");
-Object.defineProperty(exports, "PDBeStructRefDomain", { enumerable: true, get: function () { return struct_ref_domain_1.PDBeStructRefDomain; } });
-//# sourceMappingURL=index.js.map