molstar 3.0.0 → 3.0.1

package/lib/commonjs/mol-plugin-ui/structure/source.js

@@ -1,340 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.StructureSourceControls = void 0;
-var tslib_1 = require("tslib");
-var jsx_runtime_1 = require("react/jsx-runtime");
-/**
- * Copyright (c) 2020-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author David Sehnal <david.sehnal@gmail.com>
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-var structure_1 = require("../../mol-model/structure");
-var transforms_1 = require("../../mol-plugin-state/transforms");
-var mol_state_1 = require("../../mol-state");
-var base_1 = require("../base");
-var action_menu_1 = require("../controls/action-menu");
-var common_1 = require("../controls/common");
-var icons_1 = require("../controls/icons");
-var parameters_1 = require("../controls/parameters");
-var update_transform_1 = require("../state/update-transform");
-var focus_1 = require("./focus");
-var selection_1 = require("./selection");
-var StructureSourceControls = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(StructureSourceControls, _super);
-    function StructureSourceControls() {
-        var _this = _super !== null && _super.apply(this, arguments) || this;
-        _this.item = function (ref) {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            var selected = _this.plugin.managers.structure.hierarchy.seletionSet;
-            var label;
-            switch (ref.kind) {
-                case 'model': {
-                    var model = (_a = ref.cell.obj) === null || _a === void 0 ? void 0 : _a.data;
-                    if (model && structure_1.Model.TrajectoryInfo.get(model).size > 1) {
-                        label = "".concat((_b = ref.cell.obj) === null || _b === void 0 ? void 0 : _b.data.entryId, " | Model ").concat(structure_1.Model.TrajectoryInfo.get(model).index + 1, " of ").concat(structure_1.Model.TrajectoryInfo.get(model).size);
-                    }
-                    label = "".concat((_c = ref.cell.obj) === null || _c === void 0 ? void 0 : _c.data.entryId, " | ").concat((_d = ref.cell.obj) === null || _d === void 0 ? void 0 : _d.label);
-                    break;
-                }
-                case 'structure': {
-                    var model = (_e = ref.cell.obj) === null || _e === void 0 ? void 0 : _e.data.models[0];
-                    if (model && structure_1.Model.TrajectoryInfo.get(model).size > 1) {
-                        label = "".concat(model.entryId, " | ").concat((_f = ref.cell.obj) === null || _f === void 0 ? void 0 : _f.label, " (Model ").concat(structure_1.Model.TrajectoryInfo.get(model).index + 1, " of ").concat(structure_1.Model.TrajectoryInfo.get(model).size, ")");
-                        break;
-                    }
-                    else if (model) {
-                        label = "".concat(model.entryId, " | ").concat((_g = ref.cell.obj) === null || _g === void 0 ? void 0 : _g.label);
-                        break;
-                    }
-                    else {
-                        label = "".concat((_h = ref.cell.obj) === null || _h === void 0 ? void 0 : _h.label);
-                        break;
-                    }
-                }
-                default:
-                    label = (_j = ref.cell.obj) === null || _j === void 0 ? void 0 : _j.label;
-                    break;
-            }
-            var item = { kind: 'item', label: label || ref.kind, selected: selected.has(ref.cell.transform.ref), value: [ref] };
-            return item;
-        };
-        _this.getTrajectoryItems = function (t) {
-            var _a;
-            if (t.models.length === 0)
-                return _this.item(t);
-            return (0, tslib_1.__spreadArray)([action_menu_1.ActionMenu.Header((_a = t.cell.obj) === null || _a === void 0 ? void 0 : _a.label)], t.models.map(_this.getModelItems), true);
-        };
-        _this.getModelItems = function (m) {
-            var _a, _b, _c;
-            if (m.structures.length === 0)
-                return _this.item(m);
-            if (m.structures.length === 1) {
-                var selected = _this.plugin.managers.structure.hierarchy.seletionSet;
-                var ref = m.structures[0];
-                return { label: "".concat((_a = m.cell.obj) === null || _a === void 0 ? void 0 : _a.label, " | ").concat((_b = ref.cell.obj) === null || _b === void 0 ? void 0 : _b.label), selected: selected.has(ref.cell.transform.ref), value: [m, ref] };
-            }
-            return (0, tslib_1.__spreadArray)([action_menu_1.ActionMenu.Header((_c = m.cell.obj) === null || _c === void 0 ? void 0 : _c.label)], m.structures.map(_this.item), true);
-        };
-        _this.selectHierarchy = function (items) {
-            if (!items || items.length === 0)
-                return;
-            var refs = [];
-            for (var _i = 0, items_1 = items; _i < items_1.length; _i++) {
-                var i = items_1[_i];
-                for (var _a = 0, _b = i.value; _a < _b.length; _a++) {
-                    var r = _b[_a];
-                    refs.push(r);
-                }
-            }
-            _this.plugin.managers.structure.hierarchy.updateCurrent(refs, items[0].selected ? 'remove' : 'add');
-        };
-        _this.toggleHierarchy = function () { return _this.setState({ show: _this.state.show !== 'hierarchy' ? 'hierarchy' : void 0 }); };
-        _this.togglePreset = function () { return _this.setState({ show: _this.state.show !== 'presets' ? 'presets' : void 0 }); };
-        _this.applyPreset = function (item) {
-            _this.setState({ show: void 0 });
-            if (!item)
-                return;
-            var mng = _this.plugin.managers.structure;
-            var trajectories = mng.hierarchy.selection.trajectories;
-            mng.hierarchy.applyPreset(trajectories, item.value);
-        };
-        _this.updateModelQueueParams = void 0;
-        _this.isUpdatingModel = false;
-        _this.updateStructureModel = function (params) {
-            _this.updateModelQueueParams = params;
-            _this._updateStructureModel();
-        };
-        _this.updateStructure = function (params) {
-            var selection = _this.plugin.managers.structure.hierarchy.selection;
-            var s = selection.structures[0];
-            return _this.plugin.managers.structure.hierarchy.updateStructure(s, params);
-        };
-        return _this;
-    }
-    StructureSourceControls.prototype.defaultState = function () {
-        return {
-            header: 'Structure',
-            isCollapsed: false,
-            isBusy: false,
-            brand: { accent: 'purple', svg: icons_1.MoleculeSvg }
-        };
-    };
-    StructureSourceControls.prototype.componentDidMount = function () {
-        var _this = this;
-        this.subscribe(this.plugin.managers.structure.hierarchy.behaviors.selection, function () { return _this.forceUpdate(); });
-        this.subscribe(this.plugin.behaviors.state.isBusy, function (v) {
-            _this.setState({ isBusy: v });
-        });
-    };
-    Object.defineProperty(StructureSourceControls.prototype, "hierarchyItems", {
-        get: function () {
-            var mng = this.plugin.managers.structure.hierarchy;
-            var current = mng.current;
-            var ret = [];
-            if (current.trajectories.length > 1) {
-                ret.push((0, tslib_1.__spreadArray)([
-                    action_menu_1.ActionMenu.Header('Trajectories')
-                ], current.trajectories.map(this.item), true));
-            }
-            if (current.models.length > 1 || current.trajectories.length > 1) {
-                ret.push((0, tslib_1.__spreadArray)([
-                    action_menu_1.ActionMenu.Header('Models')
-                ], current.models.map(this.item), true));
-            }
-            if (current.trajectories.length === 1 && current.models.length === 1) {
-                ret.push.apply(ret, current.structures.map(this.item));
-            }
-            else if (current.structures.length > 0) {
-                ret.push((0, tslib_1.__spreadArray)([
-                    action_menu_1.ActionMenu.Header('Structures')
-                ], current.structures.map(this.item), true));
-            }
-            return ret;
-        },
-        enumerable: false,
-        configurable: true
-    });
-    Object.defineProperty(StructureSourceControls.prototype, "isEmpty", {
-        get: function () {
-            var _a = this.plugin.managers.structure.hierarchy.current, structures = _a.structures, models = _a.models, trajectories = _a.trajectories;
-            return trajectories.length === 0 && models.length === 0 && structures.length === 0;
-        },
-        enumerable: false,
-        configurable: true
-    });
-    Object.defineProperty(StructureSourceControls.prototype, "label", {
-        get: function () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o, _p;
-            var _q = this.plugin.managers.structure.hierarchy.selection, structures = _q.structures, models = _q.models, trajectories = _q.trajectories;
-            if (structures.length === 1) {
-                var s = structures[0];
-                if (((_b = (_a = s.model) === null || _a === void 0 ? void 0 : _a.trajectory) === null || _b === void 0 ? void 0 : _b.models) && s.model.trajectory.models.length === 1)
-                    return (_c = s.cell.obj) === null || _c === void 0 ? void 0 : _c.data.label;
-                if (s.model)
-                    return "".concat((_d = s.model.cell.obj) === null || _d === void 0 ? void 0 : _d.label, " | ").concat((_e = s.cell.obj) === null || _e === void 0 ? void 0 : _e.data.label);
-                return (_f = s.cell.obj) === null || _f === void 0 ? void 0 : _f.data.label;
-            }
-            if (structures.length > 1) {
-                var p = structures[0];
-                var t = (_g = p === null || p === void 0 ? void 0 : p.model) === null || _g === void 0 ? void 0 : _g.trajectory;
-                var sameTraj = true;
-                for (var _i = 0, structures_1 = structures; _i < structures_1.length; _i++) {
-                    var s = structures_1[_i];
-                    if (((_h = s === null || s === void 0 ? void 0 : s.model) === null || _h === void 0 ? void 0 : _h.trajectory) !== t) {
-                        sameTraj = false;
-                        break;
-                    }
-                }
-                return sameTraj && t ? "".concat((_j = t.cell.obj) === null || _j === void 0 ? void 0 : _j.label, " | ").concat(structures.length, " structures") : "".concat(structures.length, " structures");
-            }
-            if (models.length > 0) {
-                var t = models[0].trajectory;
-                if (models.length === 1) {
-                    var model = (_k = models[0].cell.obj) === null || _k === void 0 ? void 0 : _k.data;
-                    if (model && structure_1.Model.TrajectoryInfo.get(model).size > 1) {
-                        return "".concat((_l = t === null || t === void 0 ? void 0 : t.cell.obj) === null || _l === void 0 ? void 0 : _l.label, " | Model ").concat(structure_1.Model.TrajectoryInfo.get(model).index + 1, " of ").concat(structure_1.Model.TrajectoryInfo.get(model).size);
-                    }
-                    else {
-                        return "".concat((_m = t === null || t === void 0 ? void 0 : t.cell.obj) === null || _m === void 0 ? void 0 : _m.label, " | Model");
-                    }
-                }
-                var sameTraj = true;
-                for (var _r = 0, models_1 = models; _r < models_1.length; _r++) {
-                    var m = models_1[_r];
-                    if (m.trajectory !== t) {
-                        sameTraj = false;
-                        break;
-                    }
-                }
-                return sameTraj ? "".concat((_o = t === null || t === void 0 ? void 0 : t.cell.obj) === null || _o === void 0 ? void 0 : _o.label, " | ").concat(models.length, " models") : "".concat(models.length, " models");
-            }
-            if (trajectories.length > 0) {
-                return trajectories.length === 1 ? "".concat((_p = trajectories[0].cell.obj) === null || _p === void 0 ? void 0 : _p.label, " trajectory") : "".concat(trajectories.length, " trajectories");
-            }
-            if (trajectories.length === 0 && models.length === 0 && structures.length === 0) {
-                return 'Nothing Loaded';
-            }
-            return 'Nothing Selected';
-        },
-        enumerable: false,
-        configurable: true
-    });
-    Object.defineProperty(StructureSourceControls.prototype, "presetActions", {
-        get: function () {
-            var actions = [];
-            var trajectories = this.plugin.managers.structure.hierarchy.selection.trajectories;
-            if (trajectories.length === 0)
-                return actions;
-            var providers = this.plugin.builders.structure.hierarchy.getPresets(trajectories[0].cell.obj);
-            if (trajectories.length > 1) {
-                var providerSet_1 = new Set(providers);
-                for (var i = 1; i < trajectories.length; i++) {
-                    var providers_3 = this.plugin.builders.structure.hierarchy.getPresets(trajectories[i].cell.obj);
-                    var current = new Set(providers_3);
-                    for (var _i = 0, providers_1 = providers_3; _i < providers_1.length; _i++) {
-                        var p = providers_1[_i];
-                        if (!current.has(p))
-                            providerSet_1.delete(p);
-                    }
-                }
-                providers = providers.filter(function (p) { return providerSet_1.has(p); });
-            }
-            for (var _a = 0, providers_2 = providers; _a < providers_2.length; _a++) {
-                var p = providers_2[_a];
-                actions.push(action_menu_1.ActionMenu.Item(p.display.name, p, { description: p.display.description }));
-            }
-            return actions;
-        },
-        enumerable: false,
-        configurable: true
-    });
-    StructureSourceControls.prototype._updateStructureModel = function () {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-            var params, selection, m;
-            return (0, tslib_1.__generator)(this, function (_a) {
-                switch (_a.label) {
-                    case 0:
-                        if (!this.updateModelQueueParams || this.isUpdatingModel)
-                            return [2 /*return*/];
-                        params = this.updateModelQueueParams;
-                        this.updateModelQueueParams = void 0;
-                        _a.label = 1;
-                    case 1:
-                        _a.trys.push([1, , 3, 4]);
-                        this.isUpdatingModel = true;
-                        selection = this.plugin.managers.structure.hierarchy.selection;
-                        m = selection.structures[0].model;
-                        return [4 /*yield*/, this.plugin.state.updateTransform(this.plugin.state.data, m.cell.transform.ref, params, 'Model Index')];
-                    case 2:
-                        _a.sent();
-                        return [3 /*break*/, 4];
-                    case 3:
-                        this.isUpdatingModel = false;
-                        this._updateStructureModel();
-                        return [7 /*endfinally*/];
-                    case 4: return [2 /*return*/];
-                }
-            });
-        });
-    };
-    Object.defineProperty(StructureSourceControls.prototype, "modelIndex", {
-        get: function () {
-            var _a, _b;
-            var selection = this.plugin.managers.structure.hierarchy.selection;
-            if (selection.structures.length !== 1)
-                return null;
-            var m = selection.structures[0].model;
-            if (!m || m.cell.transform.transformer !== transforms_1.StateTransforms.Model.ModelFromTrajectory)
-                return null;
-            if (!m.cell.obj || structure_1.Model.TrajectoryInfo.get(m.cell.obj.data).size <= 1)
-                return null;
-            var params = (_a = m.cell.params) === null || _a === void 0 ? void 0 : _a.definition;
-            if (!params)
-                return null;
-            return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: params, values: (_b = m.cell.params) === null || _b === void 0 ? void 0 : _b.values, onChangeValues: this.updateStructureModel, isDisabled: this.state.isBusy }, void 0);
-        },
-        enumerable: false,
-        configurable: true
-    });
-    Object.defineProperty(StructureSourceControls.prototype, "structureType", {
-        get: function () {
-            var _a;
-            var selection = this.plugin.managers.structure.hierarchy.selection;
-            if (selection.structures.length !== 1)
-                return null;
-            var s = selection.structures[0];
-            var params = (_a = s.cell.params) === null || _a === void 0 ? void 0 : _a.definition;
-            if (!params || !s.cell.parent)
-                return null;
-            return (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: s.cell.parent, transform: s.cell.transform, customHeader: 'none', customUpdate: this.updateStructure, noMargin: true, autoHideApply: true }, void 0);
-        },
-        enumerable: false,
-        configurable: true
-    });
-    Object.defineProperty(StructureSourceControls.prototype, "transform", {
-        get: function () {
-            var selection = this.plugin.managers.structure.hierarchy.selection;
-            if (selection.structures.length !== 1)
-                return null;
-            var pivot = selection.structures[0];
-            if (!pivot.cell.parent)
-                return null;
-            var t = mol_state_1.StateSelection.tryFindDecorator(this.plugin.state.data, pivot.cell.transform.ref, transforms_1.StateTransforms.Model.TransformStructureConformation);
-            if (!t)
-                return;
-            return (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: "Conformation Transform" }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: t.parent, transform: t.transform, customHeader: 'none', noMargin: true, autoHideApply: true }, void 0) }), void 0);
-        },
-        enumerable: false,
-        configurable: true
-    });
-    StructureSourceControls.prototype.renderControls = function () {
-        var disabled = this.state.isBusy || this.isEmpty;
-        var presets = this.presetActions;
-        var label = this.label;
-        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row', style: { marginTop: '1px' } }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, flex: true, onClick: this.toggleHierarchy, disabled: disabled, title: label }, { children: label }), void 0), presets.length > 0 && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.BookmarksOutlinedSvg, className: 'msp-form-control', flex: '40px', onClick: this.togglePreset, title: 'Apply a structure presets to the current hierarchy.', toggleState: this.state.show === 'presets', disabled: disabled }, void 0)] }), void 0), this.state.show === 'hierarchy' && (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.hierarchyItems, onSelect: this.selectHierarchy, multiselect: true }, void 0), this.state.show === 'presets' && (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: presets, onSelect: this.applyPreset }, void 0), this.modelIndex, this.structureType, this.transform, (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { marginTop: '6px' } }, { children: [(0, jsx_runtime_1.jsx)(focus_1.StructureFocusControls, {}, void 0), (0, jsx_runtime_1.jsx)(selection_1.StructureSelectionStatsControls, { hideOnEmpty: true }, void 0)] }), void 0)] }, void 0);
-    };
-    return StructureSourceControls;
-}(base_1.CollapsableControls));
-exports.StructureSourceControls = StructureSourceControls;
-//# sourceMappingURL=source.js.map