molstar 2.3.3 → 2.3.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (355) hide show
  1. package/CHANGELOG.md +18 -2
  2. package/build/viewer/index.html +7 -1
  3. package/build/viewer/molstar.js +1 -1
  4. package/lib/apps/viewer/index.d.ts +6 -4
  5. package/lib/apps/viewer/index.html +7 -1
  6. package/lib/apps/viewer/index.js +8 -4
  7. package/lib/apps/viewer/index.js.map +1 -1
  8. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  9. package/lib/commonjs/apps/viewer/index.d.ts +7 -5
  10. package/lib/commonjs/apps/viewer/index.js +8 -4
  11. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  12. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  13. package/lib/commonjs/extensions/cellpack/model.d.ts +1 -1
  14. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
  15. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  16. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  17. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  18. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  19. package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
  20. package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
  21. package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
  22. package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
  23. package/lib/commonjs/mol-canvas3d/camera.js +21 -1
  24. package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
  25. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
  26. package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
  27. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  28. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  29. package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  30. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
  31. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
  32. package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
  33. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  34. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  35. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
  36. package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
  37. package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
  38. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  39. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
  40. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  41. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
  42. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  43. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  44. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  45. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  46. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  47. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  48. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  49. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  50. package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
  51. package/lib/commonjs/mol-gl/renderer.js +3 -0
  52. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  53. package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
  54. package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
  55. package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
  56. package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
  57. package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
  58. package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
  59. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  60. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
  61. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  62. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +4 -4
  63. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  64. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
  65. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  66. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  67. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
  68. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  69. package/lib/commonjs/mol-math/misc.d.ts +3 -1
  70. package/lib/commonjs/mol-math/misc.js +24 -2
  71. package/lib/commonjs/mol-math/misc.js.map +1 -1
  72. package/lib/commonjs/mol-model/loci.d.ts +32 -32
  73. package/lib/commonjs/mol-model/loci.js +4 -3
  74. package/lib/commonjs/mol-model/loci.js.map +1 -1
  75. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  76. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  77. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
  78. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  79. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  80. package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  81. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
  82. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
  83. package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
  84. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +12 -12
  85. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
  86. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  87. package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
  88. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
  89. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
  90. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  91. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  92. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  93. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
  94. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  95. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  96. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
  97. package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
  98. package/lib/commonjs/mol-plugin/config.d.ts +1 -0
  99. package/lib/commonjs/mol-plugin/config.js +1 -0
  100. package/lib/commonjs/mol-plugin/config.js.map +1 -1
  101. package/lib/commonjs/mol-plugin/context.js +6 -4
  102. package/lib/commonjs/mol-plugin/context.js.map +1 -1
  103. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  104. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  105. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
  106. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
  107. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  108. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +16 -16
  109. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  110. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  111. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
  112. package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
  113. package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
  114. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +2 -2
  115. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
  116. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
  117. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -1
  118. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +2 -2
  119. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
  120. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  121. package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
  122. package/lib/commonjs/mol-repr/structure/registry.d.ts +23 -15
  123. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +9 -6
  124. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +9 -6
  125. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  126. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  127. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +37 -19
  128. package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
  129. package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
  130. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  131. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  132. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +6 -4
  133. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +14 -9
  134. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  135. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +3 -2
  136. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +12 -8
  137. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  138. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +6 -4
  139. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +15 -7
  140. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  141. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +3 -2
  142. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +13 -6
  143. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  144. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
  145. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
  146. package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
  147. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  148. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  149. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  150. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +22 -16
  151. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -0
  152. package/lib/commonjs/mol-repr/structure/visual/util/bond.js.map +1 -1
  153. package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts +2 -2
  154. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +4 -4
  155. package/lib/commonjs/mol-repr/structure/visual/util/link.d.ts +6 -4
  156. package/lib/commonjs/mol-repr/structure/visual/util/link.js +66 -23
  157. package/lib/commonjs/mol-repr/structure/visual/util/link.js.map +1 -1
  158. package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  159. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +5 -5
  160. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +3 -3
  161. package/lib/commonjs/mol-repr/volume/registry.d.ts +4 -4
  162. package/lib/commonjs/mol-repr/volume/slice.d.ts +6 -6
  163. package/lib/commonjs/mol-theme/color/atom-id.d.ts +12 -12
  164. package/lib/commonjs/mol-theme/color/chain-id.d.ts +12 -12
  165. package/lib/commonjs/mol-theme/color/element-index.d.ts +12 -12
  166. package/lib/commonjs/mol-theme/color/element-symbol.d.ts +12 -12
  167. package/lib/commonjs/mol-theme/color/entity-id.d.ts +12 -12
  168. package/lib/commonjs/mol-theme/color/entity-source.d.ts +12 -12
  169. package/lib/commonjs/mol-theme/color/illustrative.d.ts +12 -12
  170. package/lib/commonjs/mol-theme/color/model-index.d.ts +12 -12
  171. package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +12 -12
  172. package/lib/commonjs/mol-theme/color/operator-name.d.ts +12 -12
  173. package/lib/commonjs/mol-theme/color/polymer-id.d.ts +12 -12
  174. package/lib/commonjs/mol-theme/color/polymer-index.d.ts +12 -12
  175. package/lib/commonjs/mol-theme/color/unit-index.d.ts +12 -12
  176. package/lib/commonjs/mol-theme/color.d.ts +78 -78
  177. package/lib/commonjs/mol-util/color/palette.d.ts +12 -12
  178. package/lib/commonjs/servers/model/config.js +0 -1
  179. package/lib/commonjs/servers/model/config.js.map +1 -1
  180. package/lib/commonjs/servers/volume/config.js +0 -1
  181. package/lib/commonjs/servers/volume/config.js.map +1 -1
  182. package/lib/extensions/cellpack/model.d.ts +1 -1
  183. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  184. package/lib/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  185. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  186. package/lib/extensions/rcsb/validation-report/representation.js +2 -2
  187. package/lib/mol-canvas3d/camera/util.d.ts +4 -3
  188. package/lib/mol-canvas3d/camera/util.js +15 -16
  189. package/lib/mol-canvas3d/camera/util.js.map +1 -1
  190. package/lib/mol-canvas3d/camera.d.ts +11 -3
  191. package/lib/mol-canvas3d/camera.js +22 -2
  192. package/lib/mol-canvas3d/camera.js.map +1 -1
  193. package/lib/mol-canvas3d/canvas3d.d.ts +14 -4
  194. package/lib/mol-canvas3d/canvas3d.js +9 -3
  195. package/lib/mol-canvas3d/canvas3d.js.map +1 -1
  196. package/lib/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  197. package/lib/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  198. package/lib/mol-canvas3d/helper/interaction-events.js +43 -9
  199. package/lib/mol-canvas3d/helper/interaction-events.js.map +1 -1
  200. package/lib/mol-canvas3d/passes/draw.js +1 -0
  201. package/lib/mol-canvas3d/passes/draw.js.map +1 -1
  202. package/lib/mol-canvas3d/passes/image.d.ts +2 -2
  203. package/lib/mol-canvas3d/passes/pick.d.ts +5 -2
  204. package/lib/mol-canvas3d/passes/pick.js +17 -3
  205. package/lib/mol-canvas3d/passes/pick.js.map +1 -1
  206. package/lib/mol-data/int/impl/ordered-set.d.ts +3 -3
  207. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  208. package/lib/mol-geo/geometry/direct-volume/direct-volume.js +12 -3
  209. package/lib/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  210. package/lib/mol-geo/geometry/image/image.d.ts +2 -2
  211. package/lib/mol-geo/geometry/image/image.js +5 -2
  212. package/lib/mol-geo/geometry/image/image.js.map +1 -1
  213. package/lib/mol-geo/geometry/lines/lines.js +1 -1
  214. package/lib/mol-geo/geometry/lines/lines.js.map +1 -1
  215. package/lib/mol-geo/geometry/points/points.js +1 -1
  216. package/lib/mol-geo/geometry/points/points.js.map +1 -1
  217. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  218. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  219. package/lib/mol-gl/renderer.d.ts +3 -2
  220. package/lib/mol-gl/renderer.js +3 -0
  221. package/lib/mol-gl/renderer.js.map +1 -1
  222. package/lib/mol-gl/shader/lines.vert.d.ts +1 -1
  223. package/lib/mol-gl/shader/lines.vert.js +1 -1
  224. package/lib/mol-gl/shader/lines.vert.js.map +1 -1
  225. package/lib/mol-gl/shader/points.vert.d.ts +1 -1
  226. package/lib/mol-gl/shader/points.vert.js +1 -1
  227. package/lib/mol-gl/shader/points.vert.js.map +1 -1
  228. package/lib/mol-gl/webgl/context.d.ts +1 -1
  229. package/lib/mol-io/reader/cif/schema/bird.d.ts +5 -5
  230. package/lib/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  231. package/lib/mol-io/reader/cif/schema/density-server.d.ts +4 -4
  232. package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  233. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +23 -23
  234. package/lib/mol-io/reader/ply/schema.d.ts +1 -1
  235. package/lib/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  236. package/lib/mol-math/linear-algebra/3d/vec3.js +11 -3
  237. package/lib/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  238. package/lib/mol-math/misc.d.ts +3 -1
  239. package/lib/mol-math/misc.js +22 -1
  240. package/lib/mol-math/misc.js.map +1 -1
  241. package/lib/mol-model/loci.d.ts +32 -32
  242. package/lib/mol-model/loci.js +4 -3
  243. package/lib/mol-model/loci.js.map +1 -1
  244. package/lib/mol-model/shape/shape.d.ts +1 -1
  245. package/lib/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  246. package/lib/mol-model/structure/structure/properties.d.ts +3 -3
  247. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  248. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  249. package/lib/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  250. package/lib/mol-model/structure/structure/unit/bonds.js +7 -2
  251. package/lib/mol-model/structure/structure/unit/bonds.js.map +1 -1
  252. package/lib/mol-model/structure/structure/unit.d.ts +2 -2
  253. package/lib/mol-model-formats/shape/ply.d.ts +12 -12
  254. package/lib/mol-model-formats/structure/basic/schema.d.ts +6 -6
  255. package/lib/mol-model-formats/structure/common/component.d.ts +8 -8
  256. package/lib/mol-model-formats/structure/common/entity.d.ts +1 -1
  257. package/lib/mol-model-formats/structure/pdb/entity.js +29 -3
  258. package/lib/mol-model-formats/structure/pdb/entity.js.map +1 -1
  259. package/lib/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  260. package/lib/mol-plugin/behavior/behavior.d.ts +1 -1
  261. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  262. package/lib/mol-plugin/behavior/dynamic/representation.js +23 -9
  263. package/lib/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  264. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  265. package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
  266. package/lib/mol-plugin/commands.d.ts +6 -2
  267. package/lib/mol-plugin/config.d.ts +1 -0
  268. package/lib/mol-plugin/config.js +1 -0
  269. package/lib/mol-plugin/config.js.map +1 -1
  270. package/lib/mol-plugin/context.js +6 -4
  271. package/lib/mol-plugin/context.js.map +1 -1
  272. package/lib/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  273. package/lib/mol-plugin/version.js +2 -2
  274. package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  275. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
  276. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
  277. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  278. package/lib/mol-plugin-state/formats/volume.d.ts +16 -16
  279. package/lib/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  280. package/lib/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  281. package/lib/mol-plugin-state/manager/interactivity.d.ts +2 -2
  282. package/lib/mol-plugin-state/manager/interactivity.js +12 -11
  283. package/lib/mol-plugin-state/manager/interactivity.js.map +1 -1
  284. package/lib/mol-plugin-state/manager/structure/selection.d.ts +2 -2
  285. package/lib/mol-plugin-state/transforms/data.d.ts +1 -1
  286. package/lib/mol-plugin-state/transforms/model.d.ts +9 -9
  287. package/lib/mol-plugin-state/transforms/representation.d.ts +2 -2
  288. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
  289. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
  290. package/lib/mol-repr/structure/complex-visual.d.ts +1 -1
  291. package/lib/mol-repr/structure/params.d.ts +1 -1
  292. package/lib/mol-repr/structure/registry.d.ts +19 -11
  293. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  294. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  295. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  296. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  297. package/lib/mol-repr/structure/representation/label.d.ts +3 -3
  298. package/lib/mol-repr/structure/representation/line.d.ts +34 -16
  299. package/lib/mol-repr/structure/representation/line.js +10 -4
  300. package/lib/mol-repr/structure/representation/line.js.map +1 -1
  301. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  302. package/lib/mol-repr/structure/units-visual.d.ts +1 -1
  303. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  304. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +14 -9
  305. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  306. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  307. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +12 -8
  308. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  309. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  310. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +15 -7
  311. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  312. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  313. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +13 -6
  314. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  315. package/lib/mol-repr/structure/visual/element-cross.d.ts +26 -0
  316. package/lib/mol-repr/structure/visual/element-cross.js +72 -0
  317. package/lib/mol-repr/structure/visual/element-cross.js.map +1 -0
  318. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  319. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  320. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -1
  321. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  322. package/lib/mol-repr/structure/visual/util/bond.d.ts +10 -4
  323. package/lib/mol-repr/structure/visual/util/bond.js +1 -0
  324. package/lib/mol-repr/structure/visual/util/bond.js.map +1 -1
  325. package/lib/mol-repr/structure/visual/util/color.d.ts +2 -2
  326. package/lib/mol-repr/structure/visual/util/element.d.ts +4 -4
  327. package/lib/mol-repr/structure/visual/util/link.d.ts +6 -4
  328. package/lib/mol-repr/structure/visual/util/link.js +66 -23
  329. package/lib/mol-repr/structure/visual/util/link.js.map +1 -1
  330. package/lib/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  331. package/lib/mol-repr/volume/direct-volume.d.ts +5 -5
  332. package/lib/mol-repr/volume/isosurface.d.ts +3 -3
  333. package/lib/mol-repr/volume/registry.d.ts +4 -4
  334. package/lib/mol-repr/volume/slice.d.ts +6 -6
  335. package/lib/mol-theme/color/atom-id.d.ts +12 -12
  336. package/lib/mol-theme/color/chain-id.d.ts +12 -12
  337. package/lib/mol-theme/color/element-index.d.ts +12 -12
  338. package/lib/mol-theme/color/element-symbol.d.ts +12 -12
  339. package/lib/mol-theme/color/entity-id.d.ts +12 -12
  340. package/lib/mol-theme/color/entity-source.d.ts +12 -12
  341. package/lib/mol-theme/color/illustrative.d.ts +12 -12
  342. package/lib/mol-theme/color/model-index.d.ts +12 -12
  343. package/lib/mol-theme/color/operator-hkl.d.ts +12 -12
  344. package/lib/mol-theme/color/operator-name.d.ts +12 -12
  345. package/lib/mol-theme/color/polymer-id.d.ts +12 -12
  346. package/lib/mol-theme/color/polymer-index.d.ts +12 -12
  347. package/lib/mol-theme/color/unit-index.d.ts +12 -12
  348. package/lib/mol-theme/color.d.ts +78 -78
  349. package/lib/mol-util/color/palette.d.ts +12 -12
  350. package/lib/servers/model/config.js +0 -1
  351. package/lib/servers/model/config.js.map +1 -1
  352. package/lib/servers/volume/config.js +0 -1
  353. package/lib/servers/volume/config.js.map +1 -1
  354. package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
  355. package/package.json +18 -18
package/lib/commonjs/mol-canvas3d/camera.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
@@ -11,6 +11,9 @@ var linear_algebra_1 = require("../mol-math/linear-algebra");
11
11
  var util_1 = require("./camera/util");
12
12
  var transition_1 = require("./camera/transition");
13
13
  var rxjs_1 = require("rxjs");
14
+ var tmpPos1 = (0, linear_algebra_1.Vec3)();
15
+ var tmpPos2 = (0, linear_algebra_1.Vec3)();
16
+ var tmpClip = (0, linear_algebra_1.Vec4)();
14
17
  var Camera = /** @class */ (function () {
15
18
  function Camera(state, viewport, props) {
16
19
  if (viewport === void 0) { viewport = util_1.Viewport.create(0, 0, 128, 128); }
@@ -137,12 +140,29 @@ var Camera = /** @class */ (function () {
137
140
  this.setState(this.getFocus(target, radius, up, dir), durationMs);
138
141
  }
139
142
  };
143
+ /** Transform point into 2D window coordinates. */
140
144
  Camera.prototype.project = function (out, point) {
141
145
  return (0, util_1.cameraProject)(out, point, this.viewport, this.projectionView);
142
146
  };
147
+ /**
148
+ * Transform point from screen space to 3D coordinates.
149
+ * The point must have `x` and `y` set to 2D window coordinates
150
+ * and `z` between 0 (near) and 1 (far); the optional `w` is not used.
151
+ */
143
152
  Camera.prototype.unproject = function (out, point) {
144
153
  return (0, util_1.cameraUnproject)(out, point, this.viewport, this.inverseProjectionView);
145
154
  };
155
+ /** World space pixel size at given `point` */
156
+ Camera.prototype.getPixelSize = function (point) {
157
+ // project -> unproject of `point` does not exactly return the same
158
+ // to get a sufficiently accurate measure we unproject the original
159
+ // clip position in addition to the one shifted bey one pixel
160
+ this.project(tmpClip, point);
161
+ this.unproject(tmpPos1, tmpClip);
162
+ tmpClip[0] += 1;
163
+ this.unproject(tmpPos2, tmpClip);
164
+ return linear_algebra_1.Vec3.distance(tmpPos1, tmpPos2);
165
+ };
146
166
  return Camera;
147
167
  }());
148
168
  exports.Camera = Camera;
package/lib/commonjs/mol-canvas3d/camera.js.map CHANGED
@@ -1 +1 @@
1
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package/lib/commonjs/mol-canvas3d/canvas3d.d.ts CHANGED
@@ -98,13 +98,13 @@ export declare const Canvas3DParams: {
98
98
  selectStrength: number;
99
99
  markerPriority: number;
100
100
  xrayEdgeFalloff: number;
101
- style: PD.NamedParams<PD.Normalize<{
101
+ style: PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
102
102
  lightIntensity: any;
103
103
  ambientIntensity: any;
104
104
  metalness: any;
105
105
  roughness: any;
106
106
  reflectivity: any;
107
- }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
107
+ }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
108
108
  clip: PD.Normalize<{
109
109
  variant: any;
110
110
  objects: any;
@@ -141,6 +141,10 @@ export declare const Canvas3DParams: {
141
141
  maxDistanceMin: any;
142
142
  }>, "on">;
143
143
  }>>;
144
+ interaction: PD.Group<PD.Normalize<{
145
+ maxFps: number;
146
+ preferAtomPixelPadding: number;
147
+ }>>;
144
148
  debug: PD.Group<PD.Normalize<{
145
149
  sceneBoundingSpheres: boolean;
146
150
  visibleSceneBoundingSpheres: boolean;
@@ -240,13 +244,13 @@ export declare const DefaultCanvas3DParams: PD.Values<{
240
244
  selectStrength: number;
241
245
  markerPriority: number;
242
246
  xrayEdgeFalloff: number;
243
- style: PD.NamedParams<PD.Normalize<{
247
+ style: PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
244
248
  lightIntensity: any;
245
249
  ambientIntensity: any;
246
250
  metalness: any;
247
251
  roughness: any;
248
252
  reflectivity: any;
249
- }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
253
+ }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
250
254
  clip: PD.Normalize<{
251
255
  variant: any;
252
256
  objects: any;
@@ -283,6 +287,10 @@ export declare const DefaultCanvas3DParams: PD.Values<{
283
287
  maxDistanceMin: any;
284
288
  }>, "on">;
285
289
  }>>;
290
+ interaction: PD.Group<PD.Normalize<{
291
+ maxFps: number;
292
+ preferAtomPixelPadding: number;
293
+ }>>;
286
294
  debug: PD.Group<PD.Normalize<{
287
295
  sceneBoundingSpheres: boolean;
288
296
  visibleSceneBoundingSpheres: boolean;
@@ -334,6 +342,8 @@ declare namespace Canvas3DContext {
334
342
  preserveDrawingBuffer: boolean;
335
343
  pixelScale: number;
336
344
  pickScale: number;
345
+ /** extra pixels to around target to check in case target is empty */
346
+ pickPadding: number;
337
347
  enableWboit: boolean;
338
348
  preferWebGl1: boolean;
339
349
  };
package/lib/commonjs/mol-canvas3d/canvas3d.js CHANGED
@@ -80,6 +80,7 @@ exports.Canvas3DParams = {
80
80
  marking: param_definition_1.ParamDefinition.Group(marking_1.MarkingParams),
81
81
  renderer: param_definition_1.ParamDefinition.Group(renderer_1.RendererParams),
82
82
  trackball: param_definition_1.ParamDefinition.Group(trackball_1.TrackballControlsParams),
83
+ interaction: param_definition_1.ParamDefinition.Group(interaction_events_1.Canvas3dInteractionHelperParams),
83
84
  debug: param_definition_1.ParamDefinition.Group(bounding_sphere_helper_1.DebugHelperParams),
84
85
  handle: param_definition_1.ParamDefinition.Group(handle_helper_1.HandleHelperParams),
85
86
  };
@@ -93,6 +94,8 @@ var Canvas3DContext;
93
94
  preserveDrawingBuffer: true,
94
95
  pixelScale: 1,
95
96
  pickScale: 0.25,
97
+ /** extra pixels to around target to check in case target is empty */
98
+ pickPadding: 1,
96
99
  enableWboit: true,
97
100
  preferWebGl1: false
98
101
  };
@@ -210,8 +213,8 @@ var Canvas3D;
210
213
  var controls = trackball_1.TrackballControls.create(input, camera, p.trackball);
211
214
  var renderer = renderer_1.Renderer.create(webgl, p.renderer);
212
215
  var helper = new helper_1.Helper(webgl, scene, p);
213
- var pickHelper = new pick_1.PickHelper(webgl, renderer, scene, helper, passes.pick, { x: x, y: y, width: width, height: height });
214
- var interactionHelper = new interaction_events_1.Canvas3dInteractionHelper(identify, getLoci, input, camera);
216
+ var pickHelper = new pick_1.PickHelper(webgl, renderer, scene, helper, passes.pick, { x: x, y: y, width: width, height: height }, attribs.pickPadding);
217
+ var interactionHelper = new interaction_events_1.Canvas3dInteractionHelper(identify, getLoci, input, camera, p.interaction);
215
218
  var multiSampleHelper = new multi_sample_1.MultiSampleHelper(passes.multiSample);
216
219
  var cameraResetRequested = false;
217
220
  var nextCameraResetDuration = void 0;
@@ -516,6 +519,7 @@ var Canvas3D;
516
519
  multiSample: (0, tslib_1.__assign)({}, p.multiSample),
517
520
  renderer: (0, tslib_1.__assign)({}, renderer.props),
518
521
  trackball: (0, tslib_1.__assign)({}, controls.props),
522
+ interaction: (0, tslib_1.__assign)({}, interactionHelper.props),
519
523
  debug: (0, tslib_1.__assign)({}, helper.debug.props),
520
524
  handle: (0, tslib_1.__assign)({}, helper.handle.props),
521
525
  };
@@ -659,6 +663,8 @@ var Canvas3D;
659
663
  renderer.setProps(props.renderer);
660
664
  if (props.trackball)
661
665
  controls.setProps(props.trackball);
666
+ if (props.interaction)
667
+ interactionHelper.setProps(props.interaction);
662
668
  if (props.debug)
663
669
  helper.debug.setProps(props.debug);
664
670
  if (props.handle)
package/lib/commonjs/mol-canvas3d/canvas3d.js.map CHANGED
@@ -1 +1 @@
1
- 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package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts CHANGED
@@ -11,7 +11,7 @@ import { MarkerAction } from '../../mol-util/marker-action';
11
11
  import { ParamDefinition as PD } from '../../mol-util/param-definition';
12
12
  import { Camera, ICamera } from '../camera';
13
13
  export declare const CameraHelperParams: {
14
- axes: PD.Mapped<PD.NamedParams<PD.Normalize<{
14
+ axes: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
15
15
  alpha: number;
16
16
  ignoreLight: boolean;
17
17
  colorX: import("../../mol-util/color").Color;
@@ -23,7 +23,7 @@ export declare const CameraHelperParams: {
23
23
  flatShaded: boolean;
24
24
  xrayShaded: boolean;
25
25
  quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
26
- }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
26
+ }>, "on">>;
27
27
  };
28
28
  export declare type CameraHelperParams = typeof CameraHelperParams;
29
29
  export declare type CameraHelperProps = PD.Values<CameraHelperParams>;
package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts CHANGED
@@ -1,18 +1,24 @@
1
1
  /**
2
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author David Sehnal <david.sehnal@gmail.com>
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  import { InputObserver } from '../../mol-util/input/input-observer';
8
8
  import { Camera } from '../camera';
9
+ import { ParamDefinition as PD } from '../../mol-util/param-definition';
9
10
  declare type Canvas3D = import('../canvas3d').Canvas3D;
11
+ export declare const Canvas3dInteractionHelperParams: {
12
+ maxFps: PD.Numeric;
13
+ preferAtomPixelPadding: PD.Numeric;
14
+ };
15
+ export declare type Canvas3dInteractionHelperParams = typeof Canvas3dInteractionHelperParams;
16
+ export declare type Canvas3dInteractionHelperProps = PD.Values<Canvas3dInteractionHelperParams>;
10
17
  export declare class Canvas3dInteractionHelper {
11
18
  private canvasIdentify;
12
- private getLoci;
19
+ private lociGetter;
13
20
  private input;
14
21
  private camera;
15
- private maxFps;
16
22
  private ev;
17
23
  readonly events: {
18
24
  hover: import("rxjs").Subject<import("../canvas3d").Canvas3D.HoverEvent>;
@@ -33,6 +39,8 @@ export declare class Canvas3dInteractionHelper {
33
39
  private buttons;
34
40
  private button;
35
41
  private modifiers;
42
+ readonly props: Canvas3dInteractionHelperProps;
43
+ setProps(props: Partial<Canvas3dInteractionHelperProps>): void;
36
44
  private identify;
37
45
  tick(t: number): void;
38
46
  private leave;
@@ -41,7 +49,8 @@ export declare class Canvas3dInteractionHelper {
41
49
  private drag;
42
50
  private modify;
43
51
  private outsideViewport;
52
+ private getLoci;
44
53
  dispose(): void;
45
- constructor(canvasIdentify: Canvas3D['identify'], getLoci: Canvas3D['getLoci'], input: InputObserver, camera: Camera, maxFps?: number);
54
+ constructor(canvasIdentify: Canvas3D['identify'], lociGetter: Canvas3D['getLoci'], input: InputObserver, camera: Camera, props?: Partial<Canvas3dInteractionHelperProps>);
46
55
  }
47
56
  export {};
package/lib/commonjs/mol-canvas3d/helper/interaction-events.js CHANGED
@@ -1,25 +1,34 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.Canvas3dInteractionHelper = void 0;
9
+ exports.Canvas3dInteractionHelper = exports.Canvas3dInteractionHelperParams = void 0;
10
+ var tslib_1 = require("tslib");
10
11
  var representation_1 = require("../../mol-repr/representation");
11
12
  var input_observer_1 = require("../../mol-util/input/input-observer");
12
13
  var rx_event_helper_1 = require("../../mol-util/rx-event-helper");
13
14
  var linear_algebra_1 = require("../../mol-math/linear-algebra");
15
+ var param_definition_1 = require("../../mol-util/param-definition");
16
+ var structure_1 = require("../../mol-model/structure");
17
+ var tmpPosA = (0, linear_algebra_1.Vec3)();
18
+ var tmpPos = (0, linear_algebra_1.Vec3)();
19
+ var tmpNorm = (0, linear_algebra_1.Vec3)();
20
+ exports.Canvas3dInteractionHelperParams = {
21
+ maxFps: param_definition_1.ParamDefinition.Numeric(30, { min: 10, max: 60, step: 10 }),
22
+ preferAtomPixelPadding: param_definition_1.ParamDefinition.Numeric(3, { min: 0, max: 20, step: 1 }, { description: 'Number of extra pixels at which to prefer atoms over bonds.' }),
23
+ };
14
24
  var Canvas3dInteractionHelper = /** @class */ (function () {
15
- function Canvas3dInteractionHelper(canvasIdentify, getLoci, input, camera, maxFps) {
25
+ function Canvas3dInteractionHelper(canvasIdentify, lociGetter, input, camera, props) {
16
26
  var _this = this;
17
- if (maxFps === void 0) { maxFps = 30; }
27
+ if (props === void 0) { props = {}; }
18
28
  this.canvasIdentify = canvasIdentify;
19
- this.getLoci = getLoci;
29
+ this.lociGetter = lociGetter;
20
30
  this.input = input;
21
31
  this.camera = camera;
22
- this.maxFps = maxFps;
23
32
  this.ev = rx_event_helper_1.RxEventHelper.create();
24
33
  this.events = {
25
34
  hover: this.ev(),
@@ -40,6 +49,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
40
49
  this.buttons = input_observer_1.ButtonsType.create(0);
41
50
  this.button = input_observer_1.ButtonsType.create(0);
42
51
  this.modifiers = input_observer_1.ModifiersKeys.None;
52
+ this.props = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.Canvas3dInteractionHelperParams)), props);
43
53
  input.drag.subscribe(function (_a) {
44
54
  var x = _a.x, y = _a.y, buttons = _a.buttons, button = _a.button, modifiers = _a.modifiers;
45
55
  _this.isInteracting = true;
@@ -73,6 +83,9 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
73
83
  _this.modify(modifiers);
74
84
  });
75
85
  }
86
+ Canvas3dInteractionHelper.prototype.setProps = function (props) {
87
+ Object.assign(this.props, props);
88
+ };
76
89
  Canvas3dInteractionHelper.prototype.identify = function (e, t) {
77
90
  var xyChanged = this.startX !== this.endX || this.startY !== this.endY;
78
91
  if (e === 2 /* Drag */) {
@@ -91,19 +104,19 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
91
104
  this.startY = this.endY;
92
105
  }
93
106
  if (e === 1 /* Click */) {
94
- var loci_1 = this.getLoci(this.id);
107
+ var loci_1 = this.getLoci(this.id, this.position);
95
108
  this.events.click.next({ current: loci_1, buttons: this.buttons, button: this.button, modifiers: this.modifiers, page: linear_algebra_1.Vec2.create(this.endX, this.endY), position: this.position });
96
109
  this.prevLoci = loci_1;
97
110
  return;
98
111
  }
99
112
  if (!this.inside || this.currentIdentifyT !== t || !xyChanged || this.outsideViewport(this.endX, this.endY))
100
113
  return;
101
- var loci = this.getLoci(this.id);
114
+ var loci = this.getLoci(this.id, this.position);
102
115
  this.events.hover.next({ current: loci, buttons: this.buttons, button: this.button, modifiers: this.modifiers, page: linear_algebra_1.Vec2.create(this.endX, this.endY), position: this.position });
103
116
  this.prevLoci = loci;
104
117
  };
105
118
  Canvas3dInteractionHelper.prototype.tick = function (t) {
106
- if (this.inside && t - this.prevT > 1000 / this.maxFps) {
119
+ if (this.inside && t - this.prevT > 1000 / this.props.maxFps) {
107
120
  this.prevT = t;
108
121
  this.currentIdentifyT = t;
109
122
  this.identify(this.isInteracting ? 2 /* Drag */ : 0 /* Move */, t);
@@ -155,6 +168,27 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
155
168
  x < viewport.x ||
156
169
  input.height - y < viewport.y);
157
170
  };
171
+ Canvas3dInteractionHelper.prototype.getLoci = function (pickingId, position) {
172
+ var _a;
173
+ var _b = this.lociGetter(pickingId), repr = _b.repr, loci = _b.loci;
174
+ if (position && repr && structure_1.Bond.isLoci(loci) && loci.bonds.length === 2) {
175
+ var _c = loci.bonds[0], aUnit = _c.aUnit, aIndex = _c.aIndex;
176
+ aUnit.conformation.position(aUnit.elements[aIndex], tmpPosA);
177
+ linear_algebra_1.Vec3.sub(tmpNorm, this.camera.state.position, this.camera.state.target);
178
+ linear_algebra_1.Vec3.projectPointOnPlane(tmpPos, position, tmpNorm, tmpPosA);
179
+ var pixelSize = this.camera.getPixelSize(tmpPos);
180
+ var radius = repr.theme.size.size(loci.bonds[0]) * ((_a = repr.props.sizeFactor) !== null && _a !== void 0 ? _a : 1);
181
+ if (repr.props.lineSizeAttenuation === false) {
182
+ // divide by two to get radius
183
+ radius *= pixelSize / 2;
184
+ }
185
+ radius += this.props.preferAtomPixelPadding * pixelSize;
186
+ if (linear_algebra_1.Vec3.distance(tmpPos, tmpPosA) < radius) {
187
+ return { repr: repr, loci: structure_1.Bond.toFirstStructureElementLoci(loci) };
188
+ }
189
+ }
190
+ return { repr: repr, loci: loci };
191
+ };
158
192
  Canvas3dInteractionHelper.prototype.dispose = function () {
159
193
  this.ev.dispose();
160
194
  };
package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map CHANGED
@@ -1 +1 @@
1
- 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1
+ {"version":3,"file":"interaction-events.js","sourceRoot":"","sources":["../../../../src/mol-canvas3d/helper/interaction-events.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;AAGH,gEAA+D;AAC/D,sEAAgG;AAChG,kEAA+D;AAC/D,gEAA2D;AAE3D,oEAAwE;AACxE,uDAAiD;AASjD,IAAM,OAAO,GAAG,IAAA,qBAAI,GAAE,CAAC;AACvB,IAAM,MAAM,GAAG,IAAA,qBAAI,GAAE,CAAC;AACtB,IAAM,OAAO,GAAG,IAAA,qBAAI,GAAE,CAAC;AAEV,QAAA,+BAA+B,GAAG;IAC3C,MAAM,EAAE,kCAAE,CAAC,OAAO,CAAC,EAAE,EAAE,EAAE,GAAG,EAAE,EAAE,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,CAAC;IACtD,sBAAsB,EAAE,kCAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE,WAAW,EAAE,6DAA6D,EAAE,CAAC;CACtJ,CAAC;AAIF;IA4JI,mCAAoB,cAAoC,EAAU,UAA+B,EAAU,KAAoB,EAAU,MAAc,EAAE,KAAmD;QAA5M,iBAmCC;QAnCwJ,sBAAA,EAAA,UAAmD;QAAxL,mBAAc,GAAd,cAAc,CAAsB;QAAU,eAAU,GAAV,UAAU,CAAqB;QAAU,UAAK,GAAL,KAAK,CAAe;QAAU,WAAM,GAAN,MAAM,CAAQ;QA3J/I,OAAE,GAAG,+BAAa,CAAC,MAAM,EAAE,CAAC;QAE3B,WAAM,GAAG;YACd,KAAK,EAAE,IAAI,CAAC,EAAE,EAAc;YAC5B,IAAI,EAAE,IAAI,CAAC,EAAE,EAAa;YAC1B,KAAK,EAAE,IAAI,CAAC,EAAE,EAAc;SAC/B,CAAC;QAEM,WAAM,GAAG,CAAC,CAAC,CAAC;QACZ,WAAM,GAAG,CAAC,CAAC,CAAC;QACZ,SAAI,GAAG,CAAC,CAAC,CAAC;QACV,SAAI,GAAG,CAAC,CAAC,CAAC;QAEV,OAAE,GAA0B,KAAK,CAAC,CAAC;QACnC,aAAQ,GAAqB,KAAK,CAAC,CAAC;QAEpC,qBAAgB,GAAG,CAAC,CAAC;QACrB,kBAAa,GAAG,KAAK,CAAC;QAEtB,aAAQ,GAAwB,+BAAc,CAAC,IAAI,CAAC,KAAK,CAAC;QAC1D,UAAK,GAAG,CAAC,CAAC;QAEV,WAAM,GAAG,KAAK,CAAC;QAEf,YAAO,GAAgB,4BAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAC7C,WAAM,GAAqB,4BAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QACjD,cAAS,GAAkB,8BAAa,CAAC,IAAI,CAAC;QAkIlD,IAAI,CAAC,KAAK,mDAAQ,kCAAE,CAAC,gBAAgB,CAAC,uCAA+B,CAAC,GAAK,KAAK,CAAE,CAAC;QAEnF,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAC,EAAoC;gBAAlC,CAAC,OAAA,EAAE,CAAC,OAAA,EAAE,OAAO,aAAA,EAAE,MAAM,YAAA,EAAE,SAAS,eAAA;YACpD,KAAI,CAAC,aAAa,GAAG,IAAI,CAAC;YAC1B,uBAAuB;YACvB,KAAI,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC;QAChD,CAAC,CAAC,CAAC;QAEH,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAC,EAA4C;gBAA1C,CAAC,OAAA,EAAE,CAAC,OAAA,EAAE,MAAM,YAAA,EAAE,OAAO,aAAA,EAAE,MAAM,YAAA,EAAE,SAAS,eAAA;YAC5D,IAAI,CAAC,MAAM,IAAI,KAAI,CAAC,aAAa;gBAAE,OAAO;YAC1C,uBAAuB;YACvB,KAAI,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC;QAChD,CAAC,CAAC,CAAC;QAEH,KAAK,CAAC,KAAK,CAAC,SAAS,CAAC;YAClB,wBAAwB;YACxB,KAAI,CAAC,KAAK,EAAE,CAAC;QACjB,CAAC,CAAC,CAAC;QAEH,KAAK,CAAC,KAAK,CAAC,SAAS,CAAC,UAAC,EAAoC;gBAAlC,CAAC,OAAA,EAAE,CAAC,OAAA,EAAE,OAAO,aAAA,EAAE,MAAM,YAAA,EAAE,SAAS,eAAA;YACrD,IAAI,KAAI,CAAC,eAAe,CAAC,CAAC,EAAE,CAAC,CAAC;gBAAE,OAAO;YACvC,wBAAwB;YACxB,KAAI,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC;QACjD,CAAC,CAAC,CAAC;QAEH,KAAK,CAAC,cAAc,CAAC,SAAS,CAAC;YAC3B,iCAAiC;YACjC,KAAI,CAAC,aAAa,GAAG,KAAK,CAAC;QAC/B,CAAC,CAAC,CAAC;QAEH,KAAK,CAAC,SAAS,CAAC,SAAS,CAAC,UAAA,SAAS;YAC/B,4BAA4B;YAC5B,KAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAC3B,CAAC,CAAC,CAAC;IACP,CAAC;IAhKD,4CAAQ,GAAR,UAAS,KAA8C;QACnD,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IACrC,CAAC;IAEO,4CAAQ,GAAhB,UAAiB,CAAa,EAAE,CAAS;QACrC,IAAM,SAAS,GAAG,IAAI,CAAC,MAAM,KAAK,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,KAAK,IAAI,CAAC,IAAI,CAAC;QAEzE,IAAI,CAAC,iBAAoB,EAAE;YACvB,IAAI,SAAS,IAAI,CAAC,+BAAc,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE;gBAC1D,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,QAAQ,EAAE,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,SAAS,EAAE,IAAI,CAAC,SAAS,EAAE,SAAS,EAAE,qBAAI,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,qBAAI,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBAEvN,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC;gBACxB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC;aAC3B;YACD,OAAO;SACV;QAED,IAAI,SAAS,EAAE;YACX,IAAM,QAAQ,GAAG,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;YAC3D,IAAI,CAAC,EAAE,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,EAAE,CAAC;YACvB,IAAI,CAAC,QAAQ,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,QAAQ,CAAC;YACnC,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC;YACxB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC;SAC3B;QAED,IAAI,CAAC,kBAAqB,EAAE;YACxB,IAAM,MAAI,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC;YAClD,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,MAAI,EAAE,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,SAAS,EAAE,IAAI,CAAC,SAAS,EAAE,IAAI,EAAE,qBAAI,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,CAAC,EAAE,QAAQ,EAAE,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC;YACnL,IAAI,CAAC,QAAQ,GAAG,MAAI,CAAC;YACrB,OAAO;SACV;QAED,IAAI,CAAC,IAAI,CAAC,MAAM,IAAI,IAAI,CAAC,gBAAgB,KAAK,CAAC,IAAI,CAAC,SAAS,IAAI,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,CAAC;YAAE,OAAO;QAEpH,IAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC;QAClD,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,SAAS,EAAE,IAAI,CAAC,SAAS,EAAE,IAAI,EAAE,qBAAI,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,CAAC,EAAE,QAAQ,EAAE,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC;QACnL,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC;IACzB,CAAC;IAED,wCAAI,GAAJ,UAAK,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package/lib/commonjs/mol-canvas3d/passes/draw.js CHANGED
@@ -275,6 +275,7 @@ var DrawPass = /** @class */ (function () {
275
275
  DrawPass.prototype.render = function (renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, postprocessingProps, markingProps) {
276
276
  renderer.setTransparentBackground(transparentBackground);
277
277
  renderer.setDrawingBufferSize(this.colorTarget.getWidth(), this.colorTarget.getHeight());
278
+ renderer.setPixelRatio(this.webgl.pixelRatio);
278
279
  if (stereo_1.StereoCamera.is(camera)) {
279
280
  this._render(renderer, camera.left, scene, helper, toDrawingBuffer, transparentBackground, postprocessingProps, markingProps);
280
281
  this._render(renderer, camera.right, scene, helper, toDrawingBuffer, transparentBackground, postprocessingProps, markingProps);