molstar 2.3.3 → 2.3.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (355) hide show
  1. package/CHANGELOG.md +18 -2
  2. package/build/viewer/index.html +7 -1
  3. package/build/viewer/molstar.js +1 -1
  4. package/lib/apps/viewer/index.d.ts +6 -4
  5. package/lib/apps/viewer/index.html +7 -1
  6. package/lib/apps/viewer/index.js +8 -4
  7. package/lib/apps/viewer/index.js.map +1 -1
  8. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  9. package/lib/commonjs/apps/viewer/index.d.ts +7 -5
  10. package/lib/commonjs/apps/viewer/index.js +8 -4
  11. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  12. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  13. package/lib/commonjs/extensions/cellpack/model.d.ts +1 -1
  14. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
  15. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  16. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  17. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  18. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  19. package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
  20. package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
  21. package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
  22. package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
  23. package/lib/commonjs/mol-canvas3d/camera.js +21 -1
  24. package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
  25. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
  26. package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
  27. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  28. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  29. package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  30. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
  31. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
  32. package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
  33. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  34. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  35. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
  36. package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
  37. package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
  38. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  39. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
  40. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  41. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
  42. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  43. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  44. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  45. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  46. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  47. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  48. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  49. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  50. package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
  51. package/lib/commonjs/mol-gl/renderer.js +3 -0
  52. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  53. package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
  54. package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
  55. package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
  56. package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
  57. package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
  58. package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
  59. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  60. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
  61. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  62. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +4 -4
  63. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  64. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
  65. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  66. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  67. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
  68. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  69. package/lib/commonjs/mol-math/misc.d.ts +3 -1
  70. package/lib/commonjs/mol-math/misc.js +24 -2
  71. package/lib/commonjs/mol-math/misc.js.map +1 -1
  72. package/lib/commonjs/mol-model/loci.d.ts +32 -32
  73. package/lib/commonjs/mol-model/loci.js +4 -3
  74. package/lib/commonjs/mol-model/loci.js.map +1 -1
  75. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  76. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  77. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
  78. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  79. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  80. package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  81. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
  82. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
  83. package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
  84. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +12 -12
  85. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
  86. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  87. package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
  88. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
  89. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
  90. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  91. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  92. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  93. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
  94. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  95. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  96. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
  97. package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
  98. package/lib/commonjs/mol-plugin/config.d.ts +1 -0
  99. package/lib/commonjs/mol-plugin/config.js +1 -0
  100. package/lib/commonjs/mol-plugin/config.js.map +1 -1
  101. package/lib/commonjs/mol-plugin/context.js +6 -4
  102. package/lib/commonjs/mol-plugin/context.js.map +1 -1
  103. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  104. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  105. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
  106. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
  107. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  108. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +16 -16
  109. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  110. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  111. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
  112. package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
  113. package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
  114. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +2 -2
  115. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
  116. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
  117. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -1
  118. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +2 -2
  119. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
  120. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  121. package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
  122. package/lib/commonjs/mol-repr/structure/registry.d.ts +23 -15
  123. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +9 -6
  124. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +9 -6
  125. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  126. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  127. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +37 -19
  128. package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
  129. package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
  130. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  131. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  132. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +6 -4
  133. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +14 -9
  134. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  135. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +3 -2
  136. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +12 -8
  137. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  138. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +6 -4
  139. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +15 -7
  140. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  141. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +3 -2
  142. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +13 -6
  143. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  144. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
  145. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
  146. package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
  147. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  148. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  149. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  150. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +22 -16
  151. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -0
  152. package/lib/commonjs/mol-repr/structure/visual/util/bond.js.map +1 -1
  153. package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts +2 -2
  154. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +4 -4
  155. package/lib/commonjs/mol-repr/structure/visual/util/link.d.ts +6 -4
  156. package/lib/commonjs/mol-repr/structure/visual/util/link.js +66 -23
  157. package/lib/commonjs/mol-repr/structure/visual/util/link.js.map +1 -1
  158. package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  159. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +5 -5
  160. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +3 -3
  161. package/lib/commonjs/mol-repr/volume/registry.d.ts +4 -4
  162. package/lib/commonjs/mol-repr/volume/slice.d.ts +6 -6
  163. package/lib/commonjs/mol-theme/color/atom-id.d.ts +12 -12
  164. package/lib/commonjs/mol-theme/color/chain-id.d.ts +12 -12
  165. package/lib/commonjs/mol-theme/color/element-index.d.ts +12 -12
  166. package/lib/commonjs/mol-theme/color/element-symbol.d.ts +12 -12
  167. package/lib/commonjs/mol-theme/color/entity-id.d.ts +12 -12
  168. package/lib/commonjs/mol-theme/color/entity-source.d.ts +12 -12
  169. package/lib/commonjs/mol-theme/color/illustrative.d.ts +12 -12
  170. package/lib/commonjs/mol-theme/color/model-index.d.ts +12 -12
  171. package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +12 -12
  172. package/lib/commonjs/mol-theme/color/operator-name.d.ts +12 -12
  173. package/lib/commonjs/mol-theme/color/polymer-id.d.ts +12 -12
  174. package/lib/commonjs/mol-theme/color/polymer-index.d.ts +12 -12
  175. package/lib/commonjs/mol-theme/color/unit-index.d.ts +12 -12
  176. package/lib/commonjs/mol-theme/color.d.ts +78 -78
  177. package/lib/commonjs/mol-util/color/palette.d.ts +12 -12
  178. package/lib/commonjs/servers/model/config.js +0 -1
  179. package/lib/commonjs/servers/model/config.js.map +1 -1
  180. package/lib/commonjs/servers/volume/config.js +0 -1
  181. package/lib/commonjs/servers/volume/config.js.map +1 -1
  182. package/lib/extensions/cellpack/model.d.ts +1 -1
  183. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  184. package/lib/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  185. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  186. package/lib/extensions/rcsb/validation-report/representation.js +2 -2
  187. package/lib/mol-canvas3d/camera/util.d.ts +4 -3
  188. package/lib/mol-canvas3d/camera/util.js +15 -16
  189. package/lib/mol-canvas3d/camera/util.js.map +1 -1
  190. package/lib/mol-canvas3d/camera.d.ts +11 -3
  191. package/lib/mol-canvas3d/camera.js +22 -2
  192. package/lib/mol-canvas3d/camera.js.map +1 -1
  193. package/lib/mol-canvas3d/canvas3d.d.ts +14 -4
  194. package/lib/mol-canvas3d/canvas3d.js +9 -3
  195. package/lib/mol-canvas3d/canvas3d.js.map +1 -1
  196. package/lib/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  197. package/lib/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  198. package/lib/mol-canvas3d/helper/interaction-events.js +43 -9
  199. package/lib/mol-canvas3d/helper/interaction-events.js.map +1 -1
  200. package/lib/mol-canvas3d/passes/draw.js +1 -0
  201. package/lib/mol-canvas3d/passes/draw.js.map +1 -1
  202. package/lib/mol-canvas3d/passes/image.d.ts +2 -2
  203. package/lib/mol-canvas3d/passes/pick.d.ts +5 -2
  204. package/lib/mol-canvas3d/passes/pick.js +17 -3
  205. package/lib/mol-canvas3d/passes/pick.js.map +1 -1
  206. package/lib/mol-data/int/impl/ordered-set.d.ts +3 -3
  207. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  208. package/lib/mol-geo/geometry/direct-volume/direct-volume.js +12 -3
  209. package/lib/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  210. package/lib/mol-geo/geometry/image/image.d.ts +2 -2
  211. package/lib/mol-geo/geometry/image/image.js +5 -2
  212. package/lib/mol-geo/geometry/image/image.js.map +1 -1
  213. package/lib/mol-geo/geometry/lines/lines.js +1 -1
  214. package/lib/mol-geo/geometry/lines/lines.js.map +1 -1
  215. package/lib/mol-geo/geometry/points/points.js +1 -1
  216. package/lib/mol-geo/geometry/points/points.js.map +1 -1
  217. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  218. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  219. package/lib/mol-gl/renderer.d.ts +3 -2
  220. package/lib/mol-gl/renderer.js +3 -0
  221. package/lib/mol-gl/renderer.js.map +1 -1
  222. package/lib/mol-gl/shader/lines.vert.d.ts +1 -1
  223. package/lib/mol-gl/shader/lines.vert.js +1 -1
  224. package/lib/mol-gl/shader/lines.vert.js.map +1 -1
  225. package/lib/mol-gl/shader/points.vert.d.ts +1 -1
  226. package/lib/mol-gl/shader/points.vert.js +1 -1
  227. package/lib/mol-gl/shader/points.vert.js.map +1 -1
  228. package/lib/mol-gl/webgl/context.d.ts +1 -1
  229. package/lib/mol-io/reader/cif/schema/bird.d.ts +5 -5
  230. package/lib/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  231. package/lib/mol-io/reader/cif/schema/density-server.d.ts +4 -4
  232. package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  233. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +23 -23
  234. package/lib/mol-io/reader/ply/schema.d.ts +1 -1
  235. package/lib/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  236. package/lib/mol-math/linear-algebra/3d/vec3.js +11 -3
  237. package/lib/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  238. package/lib/mol-math/misc.d.ts +3 -1
  239. package/lib/mol-math/misc.js +22 -1
  240. package/lib/mol-math/misc.js.map +1 -1
  241. package/lib/mol-model/loci.d.ts +32 -32
  242. package/lib/mol-model/loci.js +4 -3
  243. package/lib/mol-model/loci.js.map +1 -1
  244. package/lib/mol-model/shape/shape.d.ts +1 -1
  245. package/lib/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  246. package/lib/mol-model/structure/structure/properties.d.ts +3 -3
  247. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  248. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  249. package/lib/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  250. package/lib/mol-model/structure/structure/unit/bonds.js +7 -2
  251. package/lib/mol-model/structure/structure/unit/bonds.js.map +1 -1
  252. package/lib/mol-model/structure/structure/unit.d.ts +2 -2
  253. package/lib/mol-model-formats/shape/ply.d.ts +12 -12
  254. package/lib/mol-model-formats/structure/basic/schema.d.ts +6 -6
  255. package/lib/mol-model-formats/structure/common/component.d.ts +8 -8
  256. package/lib/mol-model-formats/structure/common/entity.d.ts +1 -1
  257. package/lib/mol-model-formats/structure/pdb/entity.js +29 -3
  258. package/lib/mol-model-formats/structure/pdb/entity.js.map +1 -1
  259. package/lib/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  260. package/lib/mol-plugin/behavior/behavior.d.ts +1 -1
  261. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  262. package/lib/mol-plugin/behavior/dynamic/representation.js +23 -9
  263. package/lib/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  264. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  265. package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
  266. package/lib/mol-plugin/commands.d.ts +6 -2
  267. package/lib/mol-plugin/config.d.ts +1 -0
  268. package/lib/mol-plugin/config.js +1 -0
  269. package/lib/mol-plugin/config.js.map +1 -1
  270. package/lib/mol-plugin/context.js +6 -4
  271. package/lib/mol-plugin/context.js.map +1 -1
  272. package/lib/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  273. package/lib/mol-plugin/version.js +2 -2
  274. package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  275. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
  276. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
  277. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  278. package/lib/mol-plugin-state/formats/volume.d.ts +16 -16
  279. package/lib/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  280. package/lib/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  281. package/lib/mol-plugin-state/manager/interactivity.d.ts +2 -2
  282. package/lib/mol-plugin-state/manager/interactivity.js +12 -11
  283. package/lib/mol-plugin-state/manager/interactivity.js.map +1 -1
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package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts CHANGED
@@ -11,6 +11,7 @@ export declare const InterUnitBondLineParams: {
11
11
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
12
12
  ignoreHydrogens: PD.BooleanParam;
13
13
  aromaticBonds: PD.BooleanParam;
14
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
14
15
  linkScale: PD.Numeric;
15
16
  linkSpacing: PD.Numeric;
16
17
  dashCount: PD.Numeric;
package/lib/mol-repr/structure/visual/bond-inter-unit-line.js CHANGED
@@ -27,9 +27,11 @@ function setRefPosition(pos, structure, unit, index) {
27
27
  function createInterUnitBondLines(ctx, structure, theme, props, lines) {
28
28
  var bonds = structure.interUnitBonds;
29
29
  var edgeCount = bonds.edgeCount, edges = bonds.edges;
30
- var sizeFactor = props.sizeFactor, aromaticBonds = props.aromaticBonds;
31
30
  if (!edgeCount)
32
31
  return Lines.createEmpty(lines);
32
+ var sizeFactor = props.sizeFactor, aromaticBonds = props.aromaticBonds, multipleBonds = props.multipleBonds;
33
+ var mbOff = multipleBonds === 'off';
34
+ var mbSymmetric = multipleBonds === 'symmetric';
33
35
  var ref = Vec3();
34
36
  var loc = StructureElement.Location.create();
35
37
  var builderProps = {
@@ -70,15 +72,16 @@ function createInterUnitBondLines(ctx, structure, theme, props, lines) {
70
72
  return 1 /* Dashed */;
71
73
  }
72
74
  else if (o === 3) {
73
- return 3 /* Triple */;
75
+ return mbOff ? 0 /* Solid */ :
76
+ mbSymmetric ? 4 /* Triple */ :
77
+ 5 /* OffsetTriple */;
74
78
  }
75
79
  else if (aromaticBonds && BondType.is(f, 16 /* Aromatic */)) {
76
- return 5 /* Aromatic */;
80
+ return 7 /* Aromatic */;
77
81
  }
78
- else if (o === 2) {
79
- return 2 /* Double */;
80
- }
81
- return 0 /* Solid */;
82
+ return (o !== 2 || mbOff) ? 0 /* Solid */ :
83
+ mbSymmetric ? 2 /* Double */ :
84
+ 3 /* OffsetDouble */;
82
85
  },
83
86
  radius: function (edgeIndex) {
84
87
  var b = edges[edgeIndex];
@@ -114,7 +117,8 @@ export function InterUnitBondLineVisual(materialId) {
114
117
  newProps.dashCount !== currentProps.dashCount ||
115
118
  newProps.ignoreHydrogens !== currentProps.ignoreHydrogens ||
116
119
  !arrayEqual(newProps.includeTypes, currentProps.includeTypes) ||
117
- !arrayEqual(newProps.excludeTypes, currentProps.excludeTypes));
120
+ !arrayEqual(newProps.excludeTypes, currentProps.excludeTypes) ||
121
+ newProps.multipleBonds !== currentProps.multipleBonds);
118
122
  if (newStructure.interUnitBonds !== currentStructure.interUnitBonds) {
119
123
  state.createGeometry = true;
120
124
  state.updateTransform = true;
package/lib/mol-repr/structure/visual/bond-inter-unit-line.js.map CHANGED
@@ -1 +1 @@
1
- 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+ 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package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts CHANGED
@@ -18,6 +18,7 @@ export declare const IntraUnitBondCylinderParams: {
18
18
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
19
19
  ignoreHydrogens: PD.BooleanParam;
20
20
  aromaticBonds: PD.BooleanParam;
21
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
21
22
  linkScale: PD.Numeric;
22
23
  linkSpacing: PD.Numeric;
23
24
  linkCap: PD.BooleanParam;
@@ -46,6 +47,7 @@ export declare function IntraUnitBondCylinderVisual(materialId: number, structur
46
47
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
47
48
  ignoreHydrogens: PD.BooleanParam;
48
49
  aromaticBonds: PD.BooleanParam;
50
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
49
51
  linkScale: PD.Numeric;
50
52
  linkSpacing: PD.Numeric;
51
53
  linkCap: PD.BooleanParam;
package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js CHANGED
@@ -26,7 +26,9 @@ function getIntraUnitBondCylinderBuilderProps(unit, structure, theme, props) {
26
26
  var bonds = unit.bonds;
27
27
  var edgeCount = bonds.edgeCount, a = bonds.a, b = bonds.b, edgeProps = bonds.edgeProps, offset = bonds.offset;
28
28
  var _order = edgeProps.order, _flags = edgeProps.flags;
29
- var sizeFactor = props.sizeFactor, sizeAspectRatio = props.sizeAspectRatio, adjustCylinderLength = props.adjustCylinderLength, aromaticBonds = props.aromaticBonds, includeTypes = props.includeTypes, excludeTypes = props.excludeTypes;
29
+ var sizeFactor = props.sizeFactor, sizeAspectRatio = props.sizeAspectRatio, adjustCylinderLength = props.adjustCylinderLength, aromaticBonds = props.aromaticBonds, includeTypes = props.includeTypes, excludeTypes = props.excludeTypes, multipleBonds = props.multipleBonds;
30
+ var mbOff = multipleBonds === 'off';
31
+ var mbSymmetric = multipleBonds === 'symmetric';
30
32
  var include = BondType.fromNames(includeTypes);
31
33
  var exclude = BondType.fromNames(excludeTypes);
32
34
  var ignoreComputedAromatic = ignoreBondType(include, exclude, 32 /* Computed */);
@@ -114,7 +116,9 @@ function getIntraUnitBondCylinderBuilderProps(unit, structure, theme, props) {
114
116
  return 1 /* Dashed */;
115
117
  }
116
118
  else if (o === 3) {
117
- return 3 /* Triple */;
119
+ return mbOff ? 0 /* Solid */ :
120
+ mbSymmetric ? 4 /* Triple */ :
121
+ 5 /* OffsetTriple */;
118
122
  }
119
123
  else if (aromaticBonds) {
120
124
  var aI = a[edgeIndex], bI = b[edgeIndex];
@@ -123,14 +127,16 @@ function getIntraUnitBondCylinderBuilderProps(unit, structure, theme, props) {
123
127
  var arCount = (aR && bR) ? arrayIntersectionSize(aR, bR) : 0;
124
128
  if (isBondType(f, 16 /* Aromatic */) || (arCount && !ignoreComputedAromatic)) {
125
129
  if (arCount === 2) {
126
- return 6 /* MirroredAromatic */;
130
+ return 8 /* MirroredAromatic */;
127
131
  }
128
132
  else {
129
- return 5 /* Aromatic */;
133
+ return 7 /* Aromatic */;
130
134
  }
131
135
  }
132
136
  }
133
- return o === 2 ? 2 /* Double */ : 0 /* Solid */;
137
+ return (o !== 2 || mbOff) ? 0 /* Solid */ :
138
+ mbSymmetric ? 2 /* Double */ :
139
+ 3 /* OffsetDouble */;
134
140
  },
135
141
  radius: function (edgeIndex) {
136
142
  return radius(edgeIndex) * sizeAspectRatio;
@@ -195,7 +201,8 @@ export function IntraUnitBondCylinderImpostorVisual(materialId) {
195
201
  !arrayEqual(newProps.includeTypes, currentProps.includeTypes) ||
196
202
  !arrayEqual(newProps.excludeTypes, currentProps.excludeTypes) ||
197
203
  newProps.adjustCylinderLength !== currentProps.adjustCylinderLength ||
198
- newProps.aromaticBonds !== currentProps.aromaticBonds);
204
+ newProps.aromaticBonds !== currentProps.aromaticBonds ||
205
+ newProps.multipleBonds !== currentProps.multipleBonds);
199
206
  var newUnit = newStructureGroup.group.units[0];
200
207
  var currentUnit = currentStructureGroup.group.units[0];
201
208
  if (Unit.isAtomic(newUnit) && Unit.isAtomic(currentUnit)) {
@@ -234,7 +241,8 @@ export function IntraUnitBondCylinderMeshVisual(materialId) {
234
241
  !arrayEqual(newProps.includeTypes, currentProps.includeTypes) ||
235
242
  !arrayEqual(newProps.excludeTypes, currentProps.excludeTypes) ||
236
243
  newProps.adjustCylinderLength !== currentProps.adjustCylinderLength ||
237
- newProps.aromaticBonds !== currentProps.aromaticBonds);
244
+ newProps.aromaticBonds !== currentProps.aromaticBonds ||
245
+ newProps.multipleBonds !== currentProps.multipleBonds);
238
246
  var newUnit = newStructureGroup.group.units[0];
239
247
  var currentUnit = currentStructureGroup.group.units[0];
240
248
  if (Unit.isAtomic(newUnit) && Unit.isAtomic(currentUnit)) {
package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map CHANGED
@@ -1 +1 @@
1
- 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1
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package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts CHANGED
@@ -11,6 +11,7 @@ export declare const IntraUnitBondLineParams: {
11
11
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
12
12
  ignoreHydrogens: PD.BooleanParam;
13
13
  aromaticBonds: PD.BooleanParam;
14
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
14
15
  linkScale: PD.Numeric;
15
16
  linkSpacing: PD.Numeric;
16
17
  dashCount: PD.Numeric;
package/lib/mol-repr/structure/visual/bond-intra-unit-line.js CHANGED
@@ -32,7 +32,9 @@ function createIntraUnitBondLines(ctx, unit, structure, theme, props, lines) {
32
32
  if (!edgeCount)
33
33
  return Lines.createEmpty(lines);
34
34
  var _order = edgeProps.order, _flags = edgeProps.flags;
35
- var sizeFactor = props.sizeFactor, aromaticBonds = props.aromaticBonds, includeTypes = props.includeTypes, excludeTypes = props.excludeTypes;
35
+ var sizeFactor = props.sizeFactor, aromaticBonds = props.aromaticBonds, includeTypes = props.includeTypes, excludeTypes = props.excludeTypes, multipleBonds = props.multipleBonds;
36
+ var mbOff = multipleBonds === 'off';
37
+ var mbSymmetric = multipleBonds === 'symmetric';
36
38
  var include = BondType.fromNames(includeTypes);
37
39
  var exclude = BondType.fromNames(excludeTypes);
38
40
  var ignoreComputedAromatic = ignoreBondType(include, exclude, 32 /* Computed */);
@@ -82,7 +84,9 @@ function createIntraUnitBondLines(ctx, unit, structure, theme, props, lines) {
82
84
  return 1 /* Dashed */;
83
85
  }
84
86
  else if (o === 3) {
85
- return 3 /* Triple */;
87
+ return mbOff ? 0 /* Solid */ :
88
+ mbSymmetric ? 4 /* Triple */ :
89
+ 5 /* OffsetTriple */;
86
90
  }
87
91
  else if (aromaticBonds) {
88
92
  var aI = a[edgeIndex], bI = b[edgeIndex];
@@ -91,14 +95,16 @@ function createIntraUnitBondLines(ctx, unit, structure, theme, props, lines) {
91
95
  var arCount = (aR && bR) ? arrayIntersectionSize(aR, bR) : 0;
92
96
  if (isBondType(f, 16 /* Aromatic */) || (arCount && !ignoreComputedAromatic)) {
93
97
  if (arCount === 2) {
94
- return 6 /* MirroredAromatic */;
98
+ return 8 /* MirroredAromatic */;
95
99
  }
96
100
  else {
97
- return 5 /* Aromatic */;
101
+ return 7 /* Aromatic */;
98
102
  }
99
103
  }
100
104
  }
101
- return o === 2 ? 2 /* Double */ : 0 /* Solid */;
105
+ return (o !== 2 || mbOff) ? 0 /* Solid */ :
106
+ mbSymmetric ? 2 /* Double */ :
107
+ 3 /* OffsetDouble */;
102
108
  },
103
109
  radius: function (edgeIndex) {
104
110
  location.element = elements[a[edgeIndex]];
@@ -130,7 +136,8 @@ export function IntraUnitBondLineVisual(materialId) {
130
136
  newProps.ignoreHydrogens !== currentProps.ignoreHydrogens ||
131
137
  !arrayEqual(newProps.includeTypes, currentProps.includeTypes) ||
132
138
  !arrayEqual(newProps.excludeTypes, currentProps.excludeTypes) ||
133
- newProps.aromaticBonds !== currentProps.aromaticBonds);
139
+ newProps.aromaticBonds !== currentProps.aromaticBonds ||
140
+ newProps.multipleBonds !== currentProps.multipleBonds);
134
141
  var newUnit = newStructureGroup.group.units[0];
135
142
  var currentUnit = currentStructureGroup.group.units[0];
136
143
  if (Unit.isAtomic(newUnit) && Unit.isAtomic(currentUnit)) {
package/lib/mol-repr/structure/visual/bond-intra-unit-line.js.map CHANGED
@@ -1 +1 @@
1
- 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package/lib/mol-repr/structure/visual/element-cross.d.ts ADDED
@@ -0,0 +1,26 @@
1
+ /**
2
+ * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ *
4
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
+ */
6
+ import { ParamDefinition as PD } from '../../../mol-util/param-definition';
7
+ import { UnitsVisual } from '../units-visual';
8
+ import { VisualContext } from '../../visual';
9
+ import { Unit, Structure } from '../../../mol-model/structure';
10
+ import { Theme } from '../../../mol-theme/theme';
11
+ import { Lines } from '../../../mol-geo/geometry/lines/lines';
12
+ export declare const ElementCrossParams: {
13
+ lineSizeAttenuation: PD.BooleanParam;
14
+ ignoreHydrogens: PD.BooleanParam;
15
+ traceOnly: PD.BooleanParam;
16
+ crosses: PD.Select<"all" | "lone">;
17
+ crossSize: PD.Numeric;
18
+ unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
19
+ includeParent: PD.BooleanParam;
20
+ sizeFactor: PD.Numeric;
21
+ alpha: PD.Numeric;
22
+ quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
23
+ };
24
+ export declare type ElementCrossParams = typeof ElementCrossParams;
25
+ export declare function createElementCross(ctx: VisualContext, unit: Unit, structure: Structure, theme: Theme, props: PD.Values<ElementCrossParams>, lines: Lines): Lines;
26
+ export declare function ElementCrossVisual(materialId: number): UnitsVisual<ElementCrossParams>;
package/lib/mol-repr/structure/visual/element-cross.js ADDED
@@ -0,0 +1,72 @@
1
+ /**
2
+ * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ *
4
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
+ */
6
+ import { __assign } from "tslib";
7
+ import { ParamDefinition as PD } from '../../../mol-util/param-definition';
8
+ import { UnitsLinesParams, UnitsLinesVisual } from '../units-visual';
9
+ import { Unit } from '../../../mol-model/structure';
10
+ import { Vec3 } from '../../../mol-math/linear-algebra';
11
+ import { ElementIterator, getElementLoci, eachElement, makeElementIgnoreTest } from './util/element';
12
+ import { Sphere3D } from '../../../mol-math/geometry';
13
+ import { Lines } from '../../../mol-geo/geometry/lines/lines';
14
+ import { LinesBuilder } from '../../../mol-geo/geometry/lines/lines-builder';
15
+ import { bondCount } from '../../../mol-model-props/computed/chemistry/util';
16
+ // avoiding namespace lookup improved performance in Chrome (Aug 2020)
17
+ var v3scaleAndAdd = Vec3.scaleAndAdd;
18
+ var v3unitX = Vec3.unitX;
19
+ var v3unitY = Vec3.unitY;
20
+ var v3unitZ = Vec3.unitZ;
21
+ export var ElementCrossParams = __assign(__assign({}, UnitsLinesParams), { lineSizeAttenuation: PD.Boolean(false), ignoreHydrogens: PD.Boolean(false), traceOnly: PD.Boolean(false), crosses: PD.Select('lone', PD.arrayToOptions(['lone', 'all'])), crossSize: PD.Numeric(0.35, { min: 0, max: 2, step: 0.01 }) });
22
+ export function createElementCross(ctx, unit, structure, theme, props, lines) {
23
+ var child = structure.child;
24
+ if (child && !child.unitMap.get(unit.id))
25
+ return Lines.createEmpty(lines);
26
+ var elements = unit.elements;
27
+ var n = elements.length;
28
+ var builder = LinesBuilder.create(n, n / 10, lines);
29
+ var p = Vec3();
30
+ var s = Vec3();
31
+ var e = Vec3();
32
+ var pos = unit.conformation.invariantPosition;
33
+ var ignore = makeElementIgnoreTest(structure, unit, props);
34
+ var r = props.crossSize / 2;
35
+ var lone = props.crosses === 'lone';
36
+ for (var i = 0; i < n; ++i) {
37
+ if (ignore && ignore(elements[i]))
38
+ continue;
39
+ if (lone && Unit.isAtomic(unit) && bondCount(structure, unit, i) !== 0)
40
+ continue;
41
+ pos(elements[i], p);
42
+ v3scaleAndAdd(s, p, v3unitX, r);
43
+ v3scaleAndAdd(e, p, v3unitX, -r);
44
+ builder.add(s[0], s[1], s[2], e[0], e[1], e[2], i);
45
+ v3scaleAndAdd(s, p, v3unitY, r);
46
+ v3scaleAndAdd(e, p, v3unitY, -r);
47
+ builder.add(s[0], s[1], s[2], e[0], e[1], e[2], i);
48
+ v3scaleAndAdd(s, p, v3unitZ, r);
49
+ v3scaleAndAdd(e, p, v3unitZ, -r);
50
+ builder.add(s[0], s[1], s[2], e[0], e[1], e[2], i);
51
+ }
52
+ var l = builder.getLines();
53
+ var sphere = Sphere3D.expand(Sphere3D(), unit.boundary.sphere, 1 * props.sizeFactor);
54
+ l.setBoundingSphere(sphere);
55
+ return l;
56
+ }
57
+ export function ElementCrossVisual(materialId) {
58
+ return UnitsLinesVisual({
59
+ defaultProps: PD.getDefaultValues(ElementCrossParams),
60
+ createGeometry: createElementCross,
61
+ createLocationIterator: ElementIterator.fromGroup,
62
+ getLoci: getElementLoci,
63
+ eachLocation: eachElement,
64
+ setUpdateState: function (state, newProps, currentProps) {
65
+ state.createGeometry = (newProps.ignoreHydrogens !== currentProps.ignoreHydrogens ||
66
+ newProps.traceOnly !== currentProps.traceOnly ||
67
+ newProps.crosses !== currentProps.crosses ||
68
+ newProps.crossSize !== currentProps.crossSize);
69
+ }
70
+ }, materialId);
71
+ }
72
+ //# sourceMappingURL=element-cross.js.map
package/lib/mol-repr/structure/visual/element-cross.js.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"element-cross.js","sourceRoot":"","sources":["../../../../src/mol-repr/structure/visual/element-cross.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAC3E,OAAO,EAAe,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAElF,OAAO,EAAE,IAAI,EAA+B,MAAM,8BAA8B,CAAC;AAEjF,OAAO,EAAE,IAAI,EAAE,MAAM,kCAAkC,CAAC;AACxD,OAAO,EAAE,eAAe,EAAE,cAAc,EAAE,WAAW,EAAE,qBAAqB,EAAE,MAAM,gBAAgB,CAAC;AAErG,OAAO,EAAE,QAAQ,EAAE,MAAM,4BAA4B,CAAC;AACtD,OAAO,EAAE,KAAK,EAAE,MAAM,uCAAuC,CAAC;AAC9D,OAAO,EAAE,YAAY,EAAE,MAAM,+CAA+C,CAAC;AAC7E,OAAO,EAAE,SAAS,EAAE,MAAM,kDAAkD,CAAC;AAE7E,sEAAsE;AACtE,IAAM,aAAa,GAAG,IAAI,CAAC,WAAW,CAAC;AACvC,IAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC;AAC3B,IAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC;AAC3B,IAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC;AAE3B,MAAM,CAAC,IAAM,kBAAkB,yBACxB,gBAAgB,KACnB,mBAAmB,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EACtC,eAAe,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAClC,SAAS,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAC5B,OAAO,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,EAAE,CAAC,cAAc,CAAC,CAAC,MAAM,EAAE,KAAK,CAAU,CAAC,CAAC,EACvE,SAAS,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,GAC9D,CAAC;AAGF,MAAM,UAAU,kBAAkB,CAAC,GAAkB,EAAE,IAAU,EAAE,SAAoB,EAAE,KAAY,EAAE,KAAoC,EAAE,KAAY;IAC7I,IAAA,KAAK,GAAK,SAAS,MAAd,CAAe;IAC5B,IAAI,KAAK,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC;QAAE,OAAO,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;IAE1E,IAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC;IAC/B,IAAM,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC;IAC1B,IAAM,OAAO,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,KAAK,CAAC,CAAC;IAEtD,IAAM,CAAC,GAAG,IAAI,EAAE,CAAC;IACjB,IAAM,CAAC,GAAG,IAAI,EAAE,CAAC;IACjB,IAAM,CAAC,GAAG,IAAI,EAAE,CAAC;IAEjB,IAAM,GAAG,GAAG,IAAI,CAAC,YAAY,CAAC,iBAAiB,CAAC;IAChD,IAAM,MAAM,GAAG,qBAAqB,CAAC,SAAS,EAAE,IAAI,EAAE,KAAK,CAAC,CAAC;IAE7D,IAAM,CAAC,GAAG,KAAK,CAAC,SAAS,GAAG,CAAC,CAAC;IAC9B,IAAM,IAAI,GAAG,KAAK,CAAC,OAAO,KAAK,MAAM,CAAC;IAEtC,KAAK,IAAI,CAAC,GAAG,CAA+B,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,EAAE;QACtD,IAAI,MAAM,IAAI,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;YAAE,SAAS;QAC5C,IAAI,IAAI,IAAI,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,SAAS,CAAC,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC;YAAE,SAAS;QAEjF,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QACpB,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC;QAChC,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC;QACjC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QACnD,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC;QAChC,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC;QACjC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QACnD,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC;QAChC,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC;QACjC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;KACtD;IAED,IAAM,CAAC,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC;IAE7B,IAAM,MAAM,GAAG,QAAQ,CAAC,MAAM,CAAC,QAAQ,EAAE,EAAE,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,GAAG,KAAK,CAAC,UAAU,CAAC,CAAC;IACvF,CAAC,CAAC,iBAAiB,CAAC,MAAM,CAAC,CAAC;IAE5B,OAAO,CAAC,CAAC;AACb,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,UAAkB;IACjD,OAAO,gBAAgB,CAAqB;QACxC,YAAY,EAAE,EAAE,CAAC,gBAAgB,CAAC,kBAAkB,CAAC;QACrD,cAAc,EAAE,kBAAkB;QAClC,sBAAsB,EAAE,eAAe,CAAC,SAAS;QACjD,OAAO,EAAE,cAAc;QACvB,YAAY,EAAE,WAAW;QACzB,cAAc,EAAE,UAAC,KAAwB,EAAE,QAAuC,EAAE,YAA2C;YAC3H,KAAK,CAAC,cAAc,GAAG,CACnB,QAAQ,CAAC,eAAe,KAAK,YAAY,CAAC,eAAe;gBACzD,QAAQ,CAAC,SAAS,KAAK,YAAY,CAAC,SAAS;gBAC7C,QAAQ,CAAC,OAAO,KAAK,YAAY,CAAC,OAAO;gBACzC,QAAQ,CAAC,SAAS,KAAK,YAAY,CAAC,SAAS,CAChD,CAAC;QACN,CAAC;KACJ,EAAE,UAAU,CAAC,CAAC;AACnB,CAAC"}
package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts CHANGED
@@ -22,7 +22,7 @@ export declare const GaussianDensityVolumeParams: {
22
22
  renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
23
23
  controlPoints: import("../../../mol-math/linear-algebra/3d/vec2").Vec2[];
24
24
  list: {
25
- kind: "interpolate" | "set";
25
+ kind: "set" | "interpolate";
26
26
  colors: import("../../../mol-util/color/color").ColorListEntry[];
27
27
  };
28
28
  }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -58,7 +58,7 @@ export declare const UnitsGaussianDensityVolumeParams: {
58
58
  renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
59
59
  controlPoints: import("../../../mol-math/linear-algebra/3d/vec2").Vec2[];
60
60
  list: {
61
- kind: "interpolate" | "set";
61
+ kind: "set" | "interpolate";
62
62
  colors: import("../../../mol-util/color/color").ColorListEntry[];
63
63
  };
64
64
  }>, "volume"> | PD.NamedParams<PD.Normalize<{
package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts CHANGED
@@ -12,10 +12,10 @@ export declare const GaussianSurfaceMeshParams: {
12
12
  ignoreHydrogens: PD.BooleanParam;
13
13
  tryUseGpu: PD.BooleanParam;
14
14
  includeParent: PD.BooleanParam;
15
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
15
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
16
16
  resolutionFactor: number;
17
17
  sampleStride: number;
18
- }>, "on">>;
18
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
19
19
  traceOnly: PD.BooleanParam;
20
20
  resolution: PD.Numeric;
21
21
  radiusOffset: PD.Numeric;
@@ -34,10 +34,10 @@ export declare const StructureGaussianSurfaceMeshParams: {
34
34
  ignoreHydrogens: PD.BooleanParam;
35
35
  tryUseGpu: PD.BooleanParam;
36
36
  includeParent: PD.BooleanParam;
37
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
37
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
38
38
  resolutionFactor: number;
39
39
  sampleStride: number;
40
- }>, "on">>;
40
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
41
41
  traceOnly: PD.BooleanParam;
42
42
  resolution: PD.Numeric;
43
43
  radiusOffset: PD.Numeric;
@@ -56,10 +56,10 @@ export declare function GaussianSurfaceVisual(materialId: number, structure: Str
56
56
  ignoreHydrogens: PD.BooleanParam;
57
57
  tryUseGpu: PD.BooleanParam;
58
58
  includeParent: PD.BooleanParam;
59
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
59
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
60
60
  resolutionFactor: number;
61
61
  sampleStride: number;
62
- }>, "on">>;
62
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
63
63
  traceOnly: PD.BooleanParam;
64
64
  resolution: PD.Numeric;
65
65
  radiusOffset: PD.Numeric;
@@ -77,10 +77,10 @@ export declare function StructureGaussianSurfaceVisual(materialId: number, struc
77
77
  ignoreHydrogens: PD.BooleanParam;
78
78
  tryUseGpu: PD.BooleanParam;
79
79
  includeParent: PD.BooleanParam;
80
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
80
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
81
81
  resolutionFactor: number;
82
82
  sampleStride: number;
83
- }>, "on">>;
83
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
84
84
  traceOnly: PD.BooleanParam;
85
85
  resolution: PD.Numeric;
86
86
  radiusOffset: PD.Numeric;
package/lib/mol-repr/structure/visual/label-text.d.ts CHANGED
@@ -11,7 +11,7 @@ export declare const LabelTextParams: {
11
11
  backgroundMargin: PD.Numeric;
12
12
  backgroundColor: PD.Color;
13
13
  backgroundOpacity: PD.Numeric;
14
- level: PD.Select<"residue" | "element" | "chain">;
14
+ level: PD.Select<"residue" | "chain" | "element">;
15
15
  chainScale: PD.Numeric;
16
16
  residueScale: PD.Numeric;
17
17
  elementScale: PD.Numeric;
package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts CHANGED
@@ -6,10 +6,10 @@
6
6
  import { ParamDefinition as PD } from '../../../mol-util/param-definition';
7
7
  import { UnitsVisual } from '../units-visual';
8
8
  export declare const MolecularSurfaceMeshParams: {
9
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
9
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
10
10
  resolutionFactor: number;
11
11
  sampleStride: number;
12
- }>, "on">>;
12
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
13
13
  ignoreHydrogens: PD.BooleanParam;
14
14
  traceOnly: PD.BooleanParam;
15
15
  includeParent: PD.BooleanParam;