molstar 2.3.3 → 2.3.5

package/CHANGELOG.md

@@ -6,6 +6,23 @@ Note that since we don't clearly distinguish between a public and private interf
 
 ## [Unreleased]
 
+## [v2.3.5] - 2021-10-19
+
+- Fix sequence viewer for PDB files with COMPND record and multichain entities.
+- Fix index pair bonds order assignment
+
+## [v2.3.4] - 2021-10-12
+
+- Fix pickScale not taken into account in line/point shader
+- Add pixel-scale, pick-scale & pick-padding GET params to Viewer app
+- Fix selecting bonds not adding their atoms in selection manager
+- Add ``preferAtoms`` option to SelectLoci/HighlightLoci behaviors
+- Make the implicit atoms of bond visuals pickable
+    - Add ``preferAtomPixelPadding`` to Canvas3dInteractionHelper
+- Add points & crosses visuals to Line representation
+- Add ``pickPadding`` config option (look around in case target pixel is empty)
+- Add ``multipleBonds`` param to bond visuals with options: off, symmetric, offset
+- Fix ``argparse`` config in servers.
 
 ## [v2.3.3] - 2021-10-01
 
@@ -15,11 +32,10 @@ Note that since we don't clearly distinguish between a public and private interf
 
 - Prefer WebGL1 on iOS devices until WebGL2 support has stabilized.
 
-
 ## [v2.3.1] - 2021-09-28
 
 - Add Charmm saccharide names
-- Treat missing occupancy column as occupany of 1
+- Treat missing occupancy column as occupancy of 1
 - Fix line shader not accounting for aspect ratio
 - [Breaking] Fix point repr & shader
     - Was unusable with ``wboit``

package/build/viewer/index.html

@@ -53,6 +53,9 @@
             var pdbProvider = getParam('pdb-provider', '[^&]+').trim().toLowerCase();
             var emdbProvider = getParam('emdb-provider', '[^&]+').trim().toLowerCase();
             var mapProvider = getParam('map-provider', '[^&]+').trim().toLowerCase();
+            var pixelScale = getParam('pixel-scale', '[^&]+').trim();
+            var pickScale = getParam('pick-scale', '[^&]+').trim();
+            var pickPadding = getParam('pick-padding', '[^&]+').trim();
             var viewer = new molstar.Viewer('app', {
                 layoutShowControls: !hideControls,
                 viewportShowExpand: false,
@@ -61,7 +64,10 @@
                 emdbProvider: emdbProvider || 'pdbe',
                 volumeStreamingServer: (mapProvider || 'pdbe') === 'rcsb'
                     ? 'https://maps.rcsb.org'
-                    : 'https://www.ebi.ac.uk/pdbe/densities'
+                    : 'https://www.ebi.ac.uk/pdbe/densities',
+                pixelScale: parseFloat(pixelScale) || 1,
+                pickScale: parseFloat(pickScale) || 0.25,
+                pickPadding: isNaN(parseFloat(pickPadding)) ? 1 : parseFloat(pickPadding),
             });
 
             var snapshotId = getParam('snapshot-id', '[^&]+').trim();