molstar 2.3.3 → 2.3.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +18 -2
- package/build/viewer/index.html +7 -1
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/viewer/index.d.ts +6 -4
- package/lib/apps/viewer/index.html +7 -1
- package/lib/apps/viewer/index.js +8 -4
- package/lib/apps/viewer/index.js.map +1 -1
- package/lib/cli/chem-comp-dict/util.d.ts +4 -4
- package/lib/commonjs/apps/viewer/index.d.ts +7 -5
- package/lib/commonjs/apps/viewer/index.js +8 -4
- package/lib/commonjs/apps/viewer/index.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
- package/lib/commonjs/extensions/cellpack/model.d.ts +1 -1
- package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
- package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
- package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
- package/lib/commonjs/mol-canvas3d/camera.js +21 -1
- package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
- package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
- package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
- package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
- package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
- package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
- package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
- package/lib/commonjs/mol-gl/renderer.js +3 -0
- package/lib/commonjs/mol-gl/renderer.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +4 -4
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
- package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
- package/lib/commonjs/mol-math/misc.d.ts +3 -1
- package/lib/commonjs/mol-math/misc.js +24 -2
- package/lib/commonjs/mol-math/misc.js.map +1 -1
- package/lib/commonjs/mol-model/loci.d.ts +32 -32
- package/lib/commonjs/mol-model/loci.js +4 -3
- package/lib/commonjs/mol-model/loci.js.map +1 -1
- package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +12 -12
- package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
- package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
- package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
- package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
- package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
- package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
- package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
- package/lib/commonjs/mol-plugin/config.d.ts +1 -0
- package/lib/commonjs/mol-plugin/config.js +1 -0
- package/lib/commonjs/mol-plugin/config.js.map +1 -1
- package/lib/commonjs/mol-plugin/context.js +6 -4
- package/lib/commonjs/mol-plugin/context.js.map +1 -1
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +16 -16
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
- package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
- package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +2 -2
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/registry.d.ts +23 -15
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +9 -6
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +9 -6
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +37 -19
- package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
- package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +6 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +14 -9
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +3 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +12 -8
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +6 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +15 -7
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +3 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +13 -6
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +22 -16
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -0
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/util/link.d.ts +6 -4
- package/lib/commonjs/mol-repr/structure/visual/util/link.js +66 -23
- package/lib/commonjs/mol-repr/structure/visual/util/link.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +5 -5
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +3 -3
- package/lib/commonjs/mol-repr/volume/registry.d.ts +4 -4
- package/lib/commonjs/mol-repr/volume/slice.d.ts +6 -6
- package/lib/commonjs/mol-theme/color/atom-id.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/chain-id.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/element-index.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/element-symbol.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/entity-id.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/entity-source.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/illustrative.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/model-index.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/operator-name.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/polymer-id.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/polymer-index.d.ts +12 -12
- package/lib/commonjs/mol-theme/color/unit-index.d.ts +12 -12
- package/lib/commonjs/mol-theme/color.d.ts +78 -78
- package/lib/commonjs/mol-util/color/palette.d.ts +12 -12
- package/lib/commonjs/servers/model/config.js +0 -1
- package/lib/commonjs/servers/model/config.js.map +1 -1
- package/lib/commonjs/servers/volume/config.js +0 -1
- package/lib/commonjs/servers/volume/config.js.map +1 -1
- package/lib/extensions/cellpack/model.d.ts +1 -1
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
- package/lib/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
- package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
- package/lib/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/mol-canvas3d/camera/util.d.ts +4 -3
- package/lib/mol-canvas3d/camera/util.js +15 -16
- package/lib/mol-canvas3d/camera/util.js.map +1 -1
- package/lib/mol-canvas3d/camera.d.ts +11 -3
- package/lib/mol-canvas3d/camera.js +22 -2
- package/lib/mol-canvas3d/camera.js.map +1 -1
- package/lib/mol-canvas3d/canvas3d.d.ts +14 -4
- package/lib/mol-canvas3d/canvas3d.js +9 -3
- package/lib/mol-canvas3d/canvas3d.js.map +1 -1
- package/lib/mol-canvas3d/helper/camera-helper.d.ts +2 -2
- package/lib/mol-canvas3d/helper/interaction-events.d.ts +13 -4
- package/lib/mol-canvas3d/helper/interaction-events.js +43 -9
- package/lib/mol-canvas3d/helper/interaction-events.js.map +1 -1
- package/lib/mol-canvas3d/passes/draw.js +1 -0
- package/lib/mol-canvas3d/passes/draw.js.map +1 -1
- package/lib/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/mol-canvas3d/passes/pick.d.ts +5 -2
- package/lib/mol-canvas3d/passes/pick.js +17 -3
- package/lib/mol-canvas3d/passes/pick.js.map +1 -1
- package/lib/mol-data/int/impl/ordered-set.d.ts +3 -3
- package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
- package/lib/mol-geo/geometry/direct-volume/direct-volume.js +12 -3
- package/lib/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
- package/lib/mol-geo/geometry/image/image.d.ts +2 -2
- package/lib/mol-geo/geometry/image/image.js +5 -2
- package/lib/mol-geo/geometry/image/image.js.map +1 -1
- package/lib/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/mol-geo/geometry/lines/lines.js.map +1 -1
- package/lib/mol-geo/geometry/points/points.js +1 -1
- package/lib/mol-geo/geometry/points/points.js.map +1 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
- package/lib/mol-gl/renderer.d.ts +3 -2
- package/lib/mol-gl/renderer.js +3 -0
- package/lib/mol-gl/renderer.js.map +1 -1
- package/lib/mol-gl/shader/lines.vert.d.ts +1 -1
- package/lib/mol-gl/shader/lines.vert.js +1 -1
- package/lib/mol-gl/shader/lines.vert.js.map +1 -1
- package/lib/mol-gl/shader/points.vert.d.ts +1 -1
- package/lib/mol-gl/shader/points.vert.js +1 -1
- package/lib/mol-gl/shader/points.vert.js.map +1 -1
- package/lib/mol-gl/webgl/context.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.d.ts +5 -5
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +2 -2
- package/lib/mol-io/reader/cif/schema/density-server.d.ts +4 -4
- package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +23 -23
- package/lib/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
- package/lib/mol-math/linear-algebra/3d/vec3.js +11 -3
- package/lib/mol-math/linear-algebra/3d/vec3.js.map +1 -1
- package/lib/mol-math/misc.d.ts +3 -1
- package/lib/mol-math/misc.js +22 -1
- package/lib/mol-math/misc.js.map +1 -1
- package/lib/mol-model/loci.d.ts +32 -32
- package/lib/mol-model/loci.js +4 -3
- package/lib/mol-model/loci.js.map +1 -1
- package/lib/mol-model/shape/shape.d.ts +1 -1
- package/lib/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
- package/lib/mol-model/structure/structure/properties.d.ts +3 -3
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
- package/lib/mol-model/structure/structure/unit/bonds.d.ts +2 -1
- package/lib/mol-model/structure/structure/unit/bonds.js +7 -2
- package/lib/mol-model/structure/structure/unit/bonds.js.map +1 -1
- package/lib/mol-model/structure/structure/unit.d.ts +2 -2
- package/lib/mol-model-formats/shape/ply.d.ts +12 -12
- package/lib/mol-model-formats/structure/basic/schema.d.ts +6 -6
- package/lib/mol-model-formats/structure/common/component.d.ts +8 -8
- package/lib/mol-model-formats/structure/common/entity.d.ts +1 -1
- package/lib/mol-model-formats/structure/pdb/entity.js +29 -3
- package/lib/mol-model-formats/structure/pdb/entity.js.map +1 -1
- package/lib/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
- package/lib/mol-plugin/behavior/behavior.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
- package/lib/mol-plugin/behavior/dynamic/representation.js +23 -9
- package/lib/mol-plugin/behavior/dynamic/representation.js.map +1 -1
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
- package/lib/mol-plugin/commands.d.ts +6 -2
- package/lib/mol-plugin/config.d.ts +1 -0
- package/lib/mol-plugin/config.js +1 -0
- package/lib/mol-plugin/config.js.map +1 -1
- package/lib/mol-plugin/context.js +6 -4
- package/lib/mol-plugin/context.js.map +1 -1
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +6 -6
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
- package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
- package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
- package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
- package/lib/mol-plugin-state/formats/volume.d.ts +16 -16
- package/lib/mol-plugin-state/helpers/root-structure.d.ts +7 -7
- package/lib/mol-plugin-state/helpers/structure-component.d.ts +1 -1
- package/lib/mol-plugin-state/manager/interactivity.d.ts +2 -2
- package/lib/mol-plugin-state/manager/interactivity.js +12 -11
- package/lib/mol-plugin-state/manager/interactivity.js.map +1 -1
- package/lib/mol-plugin-state/manager/structure/selection.d.ts +2 -2
- package/lib/mol-plugin-state/transforms/data.d.ts +1 -1
- package/lib/mol-plugin-state/transforms/model.d.ts +9 -9
- package/lib/mol-plugin-state/transforms/representation.d.ts +2 -2
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
- package/lib/mol-repr/structure/complex-visual.d.ts +1 -1
- package/lib/mol-repr/structure/params.d.ts +1 -1
- package/lib/mol-repr/structure/registry.d.ts +19 -11
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
- package/lib/mol-repr/structure/representation/label.d.ts +3 -3
- package/lib/mol-repr/structure/representation/line.d.ts +34 -16
- package/lib/mol-repr/structure/representation/line.js +10 -4
- package/lib/mol-repr/structure/representation/line.js.map +1 -1
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
- package/lib/mol-repr/structure/units-visual.d.ts +1 -1
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +14 -9
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +12 -8
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +15 -7
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +13 -6
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
- package/lib/mol-repr/structure/visual/element-cross.d.ts +26 -0
- package/lib/mol-repr/structure/visual/element-cross.js +72 -0
- package/lib/mol-repr/structure/visual/element-cross.js.map +1 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
- package/lib/mol-repr/structure/visual/label-text.d.ts +1 -1
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
- package/lib/mol-repr/structure/visual/util/bond.d.ts +10 -4
- package/lib/mol-repr/structure/visual/util/bond.js +1 -0
- package/lib/mol-repr/structure/visual/util/bond.js.map +1 -1
- package/lib/mol-repr/structure/visual/util/color.d.ts +2 -2
- package/lib/mol-repr/structure/visual/util/element.d.ts +4 -4
- package/lib/mol-repr/structure/visual/util/link.d.ts +6 -4
- package/lib/mol-repr/structure/visual/util/link.js +66 -23
- package/lib/mol-repr/structure/visual/util/link.js.map +1 -1
- package/lib/mol-repr/structure/visual/util/polymer.d.ts +2 -2
- package/lib/mol-repr/volume/direct-volume.d.ts +5 -5
- package/lib/mol-repr/volume/isosurface.d.ts +3 -3
- package/lib/mol-repr/volume/registry.d.ts +4 -4
- package/lib/mol-repr/volume/slice.d.ts +6 -6
- package/lib/mol-theme/color/atom-id.d.ts +12 -12
- package/lib/mol-theme/color/chain-id.d.ts +12 -12
- package/lib/mol-theme/color/element-index.d.ts +12 -12
- package/lib/mol-theme/color/element-symbol.d.ts +12 -12
- package/lib/mol-theme/color/entity-id.d.ts +12 -12
- package/lib/mol-theme/color/entity-source.d.ts +12 -12
- package/lib/mol-theme/color/illustrative.d.ts +12 -12
- package/lib/mol-theme/color/model-index.d.ts +12 -12
- package/lib/mol-theme/color/operator-hkl.d.ts +12 -12
- package/lib/mol-theme/color/operator-name.d.ts +12 -12
- package/lib/mol-theme/color/polymer-id.d.ts +12 -12
- package/lib/mol-theme/color/polymer-index.d.ts +12 -12
- package/lib/mol-theme/color/unit-index.d.ts +12 -12
- package/lib/mol-theme/color.d.ts +78 -78
- package/lib/mol-util/color/palette.d.ts +12 -12
- package/lib/servers/model/config.js +0 -1
- package/lib/servers/model/config.js.map +1 -1
- package/lib/servers/volume/config.js +0 -1
- package/lib/servers/volume/config.js.map +1 -1
- package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
- package/package.json +18 -18
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@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
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import { ThemeDataContext } from '../../mol-theme/theme';
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export declare const ModelIndexColorThemeParams: {
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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export declare type ModelIndexColorThemeParams = typeof ModelIndexColorThemeParams;
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export declare function getModelIndexColorThemeParams(ctx: ThemeDataContext): {
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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}>, "colors">>;
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export declare function ModelIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<ModelIndexColorThemeParams>): ColorTheme<ModelIndexColorThemeParams>;
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export declare const ModelIndexColorThemeProvider: ColorTheme.Provider<ModelIndexColorThemeParams, 'model-index'>;
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export declare const OperatorHklColorThemeParams: {
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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export declare type OperatorHklColorThemeParams = typeof OperatorHklColorThemeParams;
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export declare function getOperatorHklColorThemeParams(ctx: ThemeDataContext): {
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export declare function OperatorHklColorTheme(ctx: ThemeDataContext, props: PD.Values<OperatorHklColorThemeParams>): ColorTheme<OperatorHklColorThemeParams>;
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export declare const OperatorHklColorThemeProvider: ColorTheme.Provider<OperatorHklColorThemeParams, 'operator-hkl'>;
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export declare const OperatorNameColorThemeParams: {
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export declare type OperatorNameColorThemeParams = typeof OperatorNameColorThemeParams;
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export declare function OperatorNameColorTheme(ctx: ThemeDataContext, props: PD.Values<OperatorNameColorThemeParams>): ColorTheme<OperatorNameColorThemeParams>;
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export declare const OperatorNameColorThemeProvider: ColorTheme.Provider<OperatorNameColorThemeParams, 'operator-name'>;
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export declare type PolymerIdColorThemeParams = typeof PolymerIdColorThemeParams;
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export declare function PolymerIdColorTheme(ctx: ThemeDataContext, props: PD.Values<PolymerIdColorThemeParams>): ColorTheme<PolymerIdColorThemeParams>;
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export declare type PolymerIndexColorThemeParams = typeof PolymerIndexColorThemeParams;
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export declare type PolymerIndexColorThemeProps = PD.Values<typeof PolymerIndexColorThemeParams>;
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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clusteringStepCount: number;
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minSampleCount: number;
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}>, "generate"
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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list: {
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kind: "set" | "interpolate";
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colors: import("../../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors">>;
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};
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export declare type UnitIndexColorThemeParams = typeof UnitIndexColorThemeParams;
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export declare function getUnitIndexColorThemeParams(ctx: ThemeDataContext): {
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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list: {
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colors: import("../../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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}>, "generate"
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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colors: import("../../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors">>;
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export declare function UnitIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<UnitIndexColorThemeParams>): ColorTheme<UnitIndexColorThemeParams>;
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export declare const UnitIndexColorThemeProvider: ColorTheme.Provider<UnitIndexColorThemeParams, 'unit-index'>;
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@@ -56,108 +56,108 @@ declare namespace ColorTheme {
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export const BuiltIn: {
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'atom-id': Provider<{
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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colors: import("../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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}>, "colors">>;
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}, "atom-id">;
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'carbohydrate-symbol': Provider<{}, "carbohydrate-symbol">;
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'chain-id': Provider<{
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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}>, "generate"
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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};
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}>, "colors">>;
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asymId: PD.Select<"label" | "auth">;
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}, "chain-id">;
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'element-index': Provider<{
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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}>, "generate"
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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};
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}>, "colors">>;
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}, "element-index">;
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'element-symbol': Provider<{
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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}>, "generate"
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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}>, "colors">;
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}>, "chain-id"> | PD.NamedParams<PD.Normalize<{
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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clusteringStepCount: any;
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minSampleCount: any;
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}>, "generate"
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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}>, "colors">;
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}>, "operator-name"> | PD.NamedParams<PD.Normalize<unknown>, "element-symbol">>;
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saturation: PD.Numeric;
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lightness: PD.Numeric;
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}, "element-symbol">;
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'entity-id': Provider<{
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colors: import("../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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hue: [number, number];
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luminance: [number, number];
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clusteringStepCount: number;
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minSampleCount: number;
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}>, "generate"
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}, "entity-id">;
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'entity-source': Provider<{
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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kind: "set" | "interpolate";
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colors: import("../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors"
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+
}>, "colors">>;
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}, "entity-id">;
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'entity-source': Provider<{
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}>, "generate"
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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list: {
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colors: import("../mol-util/color/color").ColorListEntry[];
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+
};
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}>, "colors">>;
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}, "entity-source">;
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hydrophobicity: Provider<{
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list: PD.ColorList;
|
|
@@ -165,34 +165,34 @@ declare namespace ColorTheme {
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|
165
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}, "hydrophobicity">;
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illustrative: Provider<{
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|
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colors: import("../mol-util/color/color").ColorListEntry[];
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|
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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clusteringStepCount: number;
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minSampleCount: number;
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}>, "generate"
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+
}>, "generate"> | PD.NamedParams<PD.Normalize<{
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list: {
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colors: import("../mol-util/color/color").ColorListEntry[];
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|
+
};
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}>, "colors">>;
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|
asymId: PD.Select<"label" | "auth">;
|
|
181
181
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}, "illustrative">;
|
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'model-index': Provider<{
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colors: import("../mol-util/color/color").ColorListEntry[];
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|
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};
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|
-
}>, "colors"> | PD.NamedParams<PD.Normalize<{
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hue: [number, number];
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|
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chroma: [number, number];
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luminance: [number, number];
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clusteringStepCount: number;
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minSampleCount: number;
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|
-
}>, "generate"
|
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|
+
}>, "generate"> | PD.NamedParams<PD.Normalize<{
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|
+
list: {
|
|
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|
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kind: "set" | "interpolate";
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colors: import("../mol-util/color/color").ColorListEntry[];
|
|
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|
+
};
|
|
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|
+
}>, "colors">>;
|
|
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196
|
}, "model-index">;
|
|
197
197
|
'molecule-type': Provider<{
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|
198
198
|
saturation: PD.Numeric;
|
|
@@ -204,33 +204,33 @@ declare namespace ColorTheme {
|
|
|
204
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}, "occupancy">;
|
|
205
205
|
'operator-hkl': Provider<{
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|
206
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|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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|
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list: {
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|
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|
|
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|
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colors: import("../mol-util/color/color").ColorListEntry[];
|
|
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|
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};
|
|
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|
-
}>, "colors"> | PD.NamedParams<PD.Normalize<{
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|
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hue: [number, number];
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|
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chroma: [number, number];
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luminance: [number, number];
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clusteringStepCount: number;
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|
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minSampleCount: number;
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|
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|
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}>, "generate"
|
|
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|
-
}, "operator-hkl">;
|
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|
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'operator-name': Provider<{
|
|
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|
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
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|
+
}>, "generate"> | PD.NamedParams<PD.Normalize<{
|
|
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|
list: {
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|
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|
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kind: "
|
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|
+
kind: "set" | "interpolate";
|
|
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216
|
colors: import("../mol-util/color/color").ColorListEntry[];
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|
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217
|
};
|
|
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|
-
}>, "colors"
|
|
218
|
+
}>, "colors">>;
|
|
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|
+
}, "operator-hkl">;
|
|
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|
+
'operator-name': Provider<{
|
|
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|
+
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
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|
maxCount: number;
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|
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|
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|
chroma: [number, number];
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|
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|
luminance: [number, number];
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|
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|
clusteringStepCount: number;
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|
232
227
|
minSampleCount: number;
|
|
233
|
-
}>, "generate"
|
|
228
|
+
}>, "generate"> | PD.NamedParams<PD.Normalize<{
|
|
229
|
+
list: {
|
|
230
|
+
kind: "set" | "interpolate";
|
|
231
|
+
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
232
|
+
};
|
|
233
|
+
}>, "colors">>;
|
|
234
234
|
}, "operator-name">;
|
|
235
235
|
'partial-charge': Provider<{
|
|
236
236
|
domain: PD.Interval;
|
|
@@ -238,33 +238,33 @@ declare namespace ColorTheme {
|
|
|
238
238
|
}, "partial-charge">;
|
|
239
239
|
'polymer-id': Provider<{
|
|
240
240
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
241
|
-
list: {
|
|
242
|
-
kind: "interpolate" | "set";
|
|
243
|
-
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
244
|
-
};
|
|
245
|
-
}>, "colors"> | PD.NamedParams<PD.Normalize<{
|
|
246
241
|
maxCount: number;
|
|
247
242
|
hue: [number, number];
|
|
248
243
|
chroma: [number, number];
|
|
249
244
|
luminance: [number, number];
|
|
250
245
|
clusteringStepCount: number;
|
|
251
246
|
minSampleCount: number;
|
|
252
|
-
}>, "generate"
|
|
253
|
-
}, "polymer-id">;
|
|
254
|
-
'polymer-index': Provider<{
|
|
255
|
-
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
247
|
+
}>, "generate"> | PD.NamedParams<PD.Normalize<{
|
|
256
248
|
list: {
|
|
257
|
-
kind: "
|
|
249
|
+
kind: "set" | "interpolate";
|
|
258
250
|
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
259
251
|
};
|
|
260
|
-
}>, "colors"
|
|
252
|
+
}>, "colors">>;
|
|
253
|
+
}, "polymer-id">;
|
|
254
|
+
'polymer-index': Provider<{
|
|
255
|
+
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
261
256
|
maxCount: number;
|
|
262
257
|
hue: [number, number];
|
|
263
258
|
chroma: [number, number];
|
|
264
259
|
luminance: [number, number];
|
|
265
260
|
clusteringStepCount: number;
|
|
266
261
|
minSampleCount: number;
|
|
267
|
-
}>, "generate"
|
|
262
|
+
}>, "generate"> | PD.NamedParams<PD.Normalize<{
|
|
263
|
+
list: {
|
|
264
|
+
kind: "set" | "interpolate";
|
|
265
|
+
colors: import("../mol-util/color/color").ColorListEntry[];
|
|
266
|
+
};
|
|
267
|
+
}>, "colors">>;
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}, "polymer-index">;
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'residue-name': Provider<{
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saturation: PD.Numeric;
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@@ -284,18 +284,18 @@ declare namespace ColorTheme {
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}, "uncertainty">;
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'unit-index': Provider<{
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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list: {
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kind: "interpolate" | "set";
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-
colors: import("../mol-util/color/color").ColorListEntry[];
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};
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|
-
}>, "colors"> | PD.NamedParams<PD.Normalize<{
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maxCount: number;
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hue: [number, number];
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chroma: [number, number];
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clusteringStepCount: number;
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minSampleCount: number;
|
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|
-
}>, "generate"
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|
+
}>, "generate"> | PD.NamedParams<PD.Normalize<{
|
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|
+
list: {
|
|
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|
+
kind: "set" | "interpolate";
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|
+
colors: import("../mol-util/color/color").ColorListEntry[];
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|
+
};
|
|
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|
+
}>, "colors">>;
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}, "unit-index">;
|
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uniform: Provider<{
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value: PD.Color;
|
|
@@ -15,33 +15,33 @@ declare const DefaultGetPaletteProps: {
|
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|
15
15
|
declare type GetPaletteProps = typeof DefaultGetPaletteProps;
|
|
16
16
|
export declare function getPaletteParams(props?: Partial<GetPaletteProps>): {
|
|
17
17
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
18
|
-
list: {
|
|
19
|
-
kind: "interpolate" | "set";
|
|
20
|
-
colors: import("./color").ColorListEntry[];
|
|
21
|
-
};
|
|
22
|
-
}>, "colors"> | PD.NamedParams<PD.Normalize<{
|
|
23
18
|
maxCount: number;
|
|
24
19
|
hue: [number, number];
|
|
25
20
|
chroma: [number, number];
|
|
26
21
|
luminance: [number, number];
|
|
27
22
|
clusteringStepCount: number;
|
|
28
23
|
minSampleCount: number;
|
|
29
|
-
}>, "generate"
|
|
30
|
-
};
|
|
31
|
-
declare const DefaultPaletteProps: PD.Values<{
|
|
32
|
-
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
24
|
+
}>, "generate"> | PD.NamedParams<PD.Normalize<{
|
|
33
25
|
list: {
|
|
34
|
-
kind: "
|
|
26
|
+
kind: "set" | "interpolate";
|
|
35
27
|
colors: import("./color").ColorListEntry[];
|
|
36
28
|
};
|
|
37
|
-
}>, "colors"
|
|
29
|
+
}>, "colors">>;
|
|
30
|
+
};
|
|
31
|
+
declare const DefaultPaletteProps: PD.Values<{
|
|
32
|
+
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
38
33
|
maxCount: number;
|
|
39
34
|
hue: [number, number];
|
|
40
35
|
chroma: [number, number];
|
|
41
36
|
luminance: [number, number];
|
|
42
37
|
clusteringStepCount: number;
|
|
43
38
|
minSampleCount: number;
|
|
44
|
-
}>, "generate"
|
|
39
|
+
}>, "generate"> | PD.NamedParams<PD.Normalize<{
|
|
40
|
+
list: {
|
|
41
|
+
kind: "set" | "interpolate";
|
|
42
|
+
colors: import("./color").ColorListEntry[];
|
|
43
|
+
};
|
|
44
|
+
}>, "colors">>;
|
|
45
45
|
}>;
|
|
46
46
|
declare type PaletteProps = typeof DefaultPaletteProps;
|
|
47
47
|
declare const DefaultLabelOptions: {
|
|
@@ -201,7 +201,6 @@ function addJsonConfigArgs(parser) {
|
|
|
201
201
|
'If a property is not specified, cmd line param/OS variable/default value are used.'
|
|
202
202
|
].join('\n'),
|
|
203
203
|
required: false,
|
|
204
|
-
action: 'store_true'
|
|
205
204
|
});
|
|
206
205
|
parser.add_argument('--printCfg', { help: 'Print current config for validation and exit.', required: false, action: 'store_true' });
|
|
207
206
|
parser.add_argument('--cfgTemplate', { help: 'Prints default JSON config template to be modified and exits.', required: false, action: 'store_true' });
|