molstar 2.3.3 → 2.3.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (355) hide show
  1. package/CHANGELOG.md +18 -2
  2. package/build/viewer/index.html +7 -1
  3. package/build/viewer/molstar.js +1 -1
  4. package/lib/apps/viewer/index.d.ts +6 -4
  5. package/lib/apps/viewer/index.html +7 -1
  6. package/lib/apps/viewer/index.js +8 -4
  7. package/lib/apps/viewer/index.js.map +1 -1
  8. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  9. package/lib/commonjs/apps/viewer/index.d.ts +7 -5
  10. package/lib/commonjs/apps/viewer/index.js +8 -4
  11. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  12. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  13. package/lib/commonjs/extensions/cellpack/model.d.ts +1 -1
  14. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
  15. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  16. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  17. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  18. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  19. package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
  20. package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
  21. package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
  22. package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
  23. package/lib/commonjs/mol-canvas3d/camera.js +21 -1
  24. package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
  25. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
  26. package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
  27. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  28. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  29. package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  30. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
  31. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
  32. package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
  33. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  34. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  35. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
  36. package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
  37. package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
  38. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  39. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
  40. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  41. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
  42. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  43. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  44. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  45. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  46. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  47. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  48. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  49. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  50. package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
  51. package/lib/commonjs/mol-gl/renderer.js +3 -0
  52. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  53. package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
  54. package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
  55. package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
  56. package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
  57. package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
  58. package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
  59. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  60. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
  61. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  62. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +4 -4
  63. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  64. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
  65. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  66. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  67. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
  68. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  69. package/lib/commonjs/mol-math/misc.d.ts +3 -1
  70. package/lib/commonjs/mol-math/misc.js +24 -2
  71. package/lib/commonjs/mol-math/misc.js.map +1 -1
  72. package/lib/commonjs/mol-model/loci.d.ts +32 -32
  73. package/lib/commonjs/mol-model/loci.js +4 -3
  74. package/lib/commonjs/mol-model/loci.js.map +1 -1
  75. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  76. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  77. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
  78. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  79. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  80. package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  81. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
  82. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
  83. package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
  84. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +12 -12
  85. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
  86. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  87. package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
  88. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
  89. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
  90. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  91. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  92. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  93. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
  94. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  95. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  96. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
  97. package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
  98. package/lib/commonjs/mol-plugin/config.d.ts +1 -0
  99. package/lib/commonjs/mol-plugin/config.js +1 -0
  100. package/lib/commonjs/mol-plugin/config.js.map +1 -1
  101. package/lib/commonjs/mol-plugin/context.js +6 -4
  102. package/lib/commonjs/mol-plugin/context.js.map +1 -1
  103. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  104. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  105. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
  106. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
  107. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  108. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +16 -16
  109. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  110. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  111. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
  112. package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
  113. package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
  114. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +2 -2
  115. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
  116. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
  117. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -1
  118. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +2 -2
  119. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
  120. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  121. package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
  122. package/lib/commonjs/mol-repr/structure/registry.d.ts +23 -15
  123. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +9 -6
  124. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +9 -6
  125. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  126. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  127. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +37 -19
  128. package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
  129. package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
  130. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  131. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  132. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +6 -4
  133. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +14 -9
  134. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  135. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +3 -2
  136. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +12 -8
  137. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  138. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +6 -4
  139. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +15 -7
  140. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  141. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +3 -2
  142. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +13 -6
  143. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  144. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
  145. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
  146. package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
  147. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  148. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  149. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  150. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +22 -16
  151. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -0
  152. package/lib/commonjs/mol-repr/structure/visual/util/bond.js.map +1 -1
  153. package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts +2 -2
  154. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +4 -4
  155. package/lib/commonjs/mol-repr/structure/visual/util/link.d.ts +6 -4
  156. package/lib/commonjs/mol-repr/structure/visual/util/link.js +66 -23
  157. package/lib/commonjs/mol-repr/structure/visual/util/link.js.map +1 -1
  158. package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  159. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +5 -5
  160. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +3 -3
  161. package/lib/commonjs/mol-repr/volume/registry.d.ts +4 -4
  162. package/lib/commonjs/mol-repr/volume/slice.d.ts +6 -6
  163. package/lib/commonjs/mol-theme/color/atom-id.d.ts +12 -12
  164. package/lib/commonjs/mol-theme/color/chain-id.d.ts +12 -12
  165. package/lib/commonjs/mol-theme/color/element-index.d.ts +12 -12
  166. package/lib/commonjs/mol-theme/color/element-symbol.d.ts +12 -12
  167. package/lib/commonjs/mol-theme/color/entity-id.d.ts +12 -12
  168. package/lib/commonjs/mol-theme/color/entity-source.d.ts +12 -12
  169. package/lib/commonjs/mol-theme/color/illustrative.d.ts +12 -12
  170. package/lib/commonjs/mol-theme/color/model-index.d.ts +12 -12
  171. package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +12 -12
  172. package/lib/commonjs/mol-theme/color/operator-name.d.ts +12 -12
  173. package/lib/commonjs/mol-theme/color/polymer-id.d.ts +12 -12
  174. package/lib/commonjs/mol-theme/color/polymer-index.d.ts +12 -12
  175. package/lib/commonjs/mol-theme/color/unit-index.d.ts +12 -12
  176. package/lib/commonjs/mol-theme/color.d.ts +78 -78
  177. package/lib/commonjs/mol-util/color/palette.d.ts +12 -12
  178. package/lib/commonjs/servers/model/config.js +0 -1
  179. package/lib/commonjs/servers/model/config.js.map +1 -1
  180. package/lib/commonjs/servers/volume/config.js +0 -1
  181. package/lib/commonjs/servers/volume/config.js.map +1 -1
  182. package/lib/extensions/cellpack/model.d.ts +1 -1
  183. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  184. package/lib/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  185. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  186. package/lib/extensions/rcsb/validation-report/representation.js +2 -2
  187. package/lib/mol-canvas3d/camera/util.d.ts +4 -3
  188. package/lib/mol-canvas3d/camera/util.js +15 -16
  189. package/lib/mol-canvas3d/camera/util.js.map +1 -1
  190. package/lib/mol-canvas3d/camera.d.ts +11 -3
  191. package/lib/mol-canvas3d/camera.js +22 -2
  192. package/lib/mol-canvas3d/camera.js.map +1 -1
  193. package/lib/mol-canvas3d/canvas3d.d.ts +14 -4
  194. package/lib/mol-canvas3d/canvas3d.js +9 -3
  195. package/lib/mol-canvas3d/canvas3d.js.map +1 -1
  196. package/lib/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  197. package/lib/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  198. package/lib/mol-canvas3d/helper/interaction-events.js +43 -9
  199. package/lib/mol-canvas3d/helper/interaction-events.js.map +1 -1
  200. package/lib/mol-canvas3d/passes/draw.js +1 -0
  201. package/lib/mol-canvas3d/passes/draw.js.map +1 -1
  202. package/lib/mol-canvas3d/passes/image.d.ts +2 -2
  203. package/lib/mol-canvas3d/passes/pick.d.ts +5 -2
  204. package/lib/mol-canvas3d/passes/pick.js +17 -3
  205. package/lib/mol-canvas3d/passes/pick.js.map +1 -1
  206. package/lib/mol-data/int/impl/ordered-set.d.ts +3 -3
  207. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  208. package/lib/mol-geo/geometry/direct-volume/direct-volume.js +12 -3
  209. package/lib/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  210. package/lib/mol-geo/geometry/image/image.d.ts +2 -2
  211. package/lib/mol-geo/geometry/image/image.js +5 -2
  212. package/lib/mol-geo/geometry/image/image.js.map +1 -1
  213. package/lib/mol-geo/geometry/lines/lines.js +1 -1
  214. package/lib/mol-geo/geometry/lines/lines.js.map +1 -1
  215. package/lib/mol-geo/geometry/points/points.js +1 -1
  216. package/lib/mol-geo/geometry/points/points.js.map +1 -1
  217. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  218. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  219. package/lib/mol-gl/renderer.d.ts +3 -2
  220. package/lib/mol-gl/renderer.js +3 -0
  221. package/lib/mol-gl/renderer.js.map +1 -1
  222. package/lib/mol-gl/shader/lines.vert.d.ts +1 -1
  223. package/lib/mol-gl/shader/lines.vert.js +1 -1
  224. package/lib/mol-gl/shader/lines.vert.js.map +1 -1
  225. package/lib/mol-gl/shader/points.vert.d.ts +1 -1
  226. package/lib/mol-gl/shader/points.vert.js +1 -1
  227. package/lib/mol-gl/shader/points.vert.js.map +1 -1
  228. package/lib/mol-gl/webgl/context.d.ts +1 -1
  229. package/lib/mol-io/reader/cif/schema/bird.d.ts +5 -5
  230. package/lib/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  231. package/lib/mol-io/reader/cif/schema/density-server.d.ts +4 -4
  232. package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  233. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +23 -23
  234. package/lib/mol-io/reader/ply/schema.d.ts +1 -1
  235. package/lib/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  236. package/lib/mol-math/linear-algebra/3d/vec3.js +11 -3
  237. package/lib/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  238. package/lib/mol-math/misc.d.ts +3 -1
  239. package/lib/mol-math/misc.js +22 -1
  240. package/lib/mol-math/misc.js.map +1 -1
  241. package/lib/mol-model/loci.d.ts +32 -32
  242. package/lib/mol-model/loci.js +4 -3
  243. package/lib/mol-model/loci.js.map +1 -1
  244. package/lib/mol-model/shape/shape.d.ts +1 -1
  245. package/lib/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  246. package/lib/mol-model/structure/structure/properties.d.ts +3 -3
  247. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  248. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  249. package/lib/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  250. package/lib/mol-model/structure/structure/unit/bonds.js +7 -2
  251. package/lib/mol-model/structure/structure/unit/bonds.js.map +1 -1
  252. package/lib/mol-model/structure/structure/unit.d.ts +2 -2
  253. package/lib/mol-model-formats/shape/ply.d.ts +12 -12
  254. package/lib/mol-model-formats/structure/basic/schema.d.ts +6 -6
  255. package/lib/mol-model-formats/structure/common/component.d.ts +8 -8
  256. package/lib/mol-model-formats/structure/common/entity.d.ts +1 -1
  257. package/lib/mol-model-formats/structure/pdb/entity.js +29 -3
  258. package/lib/mol-model-formats/structure/pdb/entity.js.map +1 -1
  259. package/lib/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  260. package/lib/mol-plugin/behavior/behavior.d.ts +1 -1
  261. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  262. package/lib/mol-plugin/behavior/dynamic/representation.js +23 -9
  263. package/lib/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  264. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  265. package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
  266. package/lib/mol-plugin/commands.d.ts +6 -2
  267. package/lib/mol-plugin/config.d.ts +1 -0
  268. package/lib/mol-plugin/config.js +1 -0
  269. package/lib/mol-plugin/config.js.map +1 -1
  270. package/lib/mol-plugin/context.js +6 -4
  271. package/lib/mol-plugin/context.js.map +1 -1
  272. package/lib/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  273. package/lib/mol-plugin/version.js +2 -2
  274. package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  275. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
  276. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
  277. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  278. package/lib/mol-plugin-state/formats/volume.d.ts +16 -16
  279. package/lib/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  280. package/lib/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  281. package/lib/mol-plugin-state/manager/interactivity.d.ts +2 -2
  282. package/lib/mol-plugin-state/manager/interactivity.js +12 -11
  283. package/lib/mol-plugin-state/manager/interactivity.js.map +1 -1
  284. package/lib/mol-plugin-state/manager/structure/selection.d.ts +2 -2
  285. package/lib/mol-plugin-state/transforms/data.d.ts +1 -1
  286. package/lib/mol-plugin-state/transforms/model.d.ts +9 -9
  287. package/lib/mol-plugin-state/transforms/representation.d.ts +2 -2
  288. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
  289. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
  290. package/lib/mol-repr/structure/complex-visual.d.ts +1 -1
  291. package/lib/mol-repr/structure/params.d.ts +1 -1
  292. package/lib/mol-repr/structure/registry.d.ts +19 -11
  293. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  294. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  295. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  296. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  297. package/lib/mol-repr/structure/representation/label.d.ts +3 -3
  298. package/lib/mol-repr/structure/representation/line.d.ts +34 -16
  299. package/lib/mol-repr/structure/representation/line.js +10 -4
  300. package/lib/mol-repr/structure/representation/line.js.map +1 -1
  301. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  302. package/lib/mol-repr/structure/units-visual.d.ts +1 -1
  303. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  304. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +14 -9
  305. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  306. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  307. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +12 -8
  308. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  309. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  310. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +15 -7
  311. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  312. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  313. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +13 -6
  314. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  315. package/lib/mol-repr/structure/visual/element-cross.d.ts +26 -0
  316. package/lib/mol-repr/structure/visual/element-cross.js +72 -0
  317. package/lib/mol-repr/structure/visual/element-cross.js.map +1 -0
  318. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  319. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  320. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -1
  321. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  322. package/lib/mol-repr/structure/visual/util/bond.d.ts +10 -4
  323. package/lib/mol-repr/structure/visual/util/bond.js +1 -0
  324. package/lib/mol-repr/structure/visual/util/bond.js.map +1 -1
  325. package/lib/mol-repr/structure/visual/util/color.d.ts +2 -2
  326. package/lib/mol-repr/structure/visual/util/element.d.ts +4 -4
  327. package/lib/mol-repr/structure/visual/util/link.d.ts +6 -4
  328. package/lib/mol-repr/structure/visual/util/link.js +66 -23
  329. package/lib/mol-repr/structure/visual/util/link.js.map +1 -1
  330. package/lib/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  331. package/lib/mol-repr/volume/direct-volume.d.ts +5 -5
  332. package/lib/mol-repr/volume/isosurface.d.ts +3 -3
  333. package/lib/mol-repr/volume/registry.d.ts +4 -4
  334. package/lib/mol-repr/volume/slice.d.ts +6 -6
  335. package/lib/mol-theme/color/atom-id.d.ts +12 -12
  336. package/lib/mol-theme/color/chain-id.d.ts +12 -12
  337. package/lib/mol-theme/color/element-index.d.ts +12 -12
  338. package/lib/mol-theme/color/element-symbol.d.ts +12 -12
  339. package/lib/mol-theme/color/entity-id.d.ts +12 -12
  340. package/lib/mol-theme/color/entity-source.d.ts +12 -12
  341. package/lib/mol-theme/color/illustrative.d.ts +12 -12
  342. package/lib/mol-theme/color/model-index.d.ts +12 -12
  343. package/lib/mol-theme/color/operator-hkl.d.ts +12 -12
  344. package/lib/mol-theme/color/operator-name.d.ts +12 -12
  345. package/lib/mol-theme/color/polymer-id.d.ts +12 -12
  346. package/lib/mol-theme/color/polymer-index.d.ts +12 -12
  347. package/lib/mol-theme/color/unit-index.d.ts +12 -12
  348. package/lib/mol-theme/color.d.ts +78 -78
  349. package/lib/mol-util/color/palette.d.ts +12 -12
  350. package/lib/servers/model/config.js +0 -1
  351. package/lib/servers/model/config.js.map +1 -1
  352. package/lib/servers/volume/config.js +0 -1
  353. package/lib/servers/volume/config.js.map +1 -1
  354. package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
  355. package/package.json +18 -18
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../../mol-theme/theme';
9
9
  export declare const ModelIndexColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
18
13
  chroma: [number, number];
19
14
  luminance: [number, number];
20
15
  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
23
23
  };
24
24
  export declare type ModelIndexColorThemeParams = typeof ModelIndexColorThemeParams;
25
25
  export declare function getModelIndexColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
31
  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare function ModelIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<ModelIndexColorThemeParams>): ColorTheme<ModelIndexColorThemeParams>;
41
41
  export declare const ModelIndexColorThemeProvider: ColorTheme.Provider<ModelIndexColorThemeParams, 'model-index'>;
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../theme';
9
9
  export declare const OperatorHklColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
18
13
  chroma: [number, number];
19
14
  luminance: [number, number];
20
15
  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
23
23
  };
24
24
  export declare type OperatorHklColorThemeParams = typeof OperatorHklColorThemeParams;
25
25
  export declare function getOperatorHklColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
31
  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare function OperatorHklColorTheme(ctx: ThemeDataContext, props: PD.Values<OperatorHklColorThemeParams>): ColorTheme<OperatorHklColorThemeParams>;
41
41
  export declare const OperatorHklColorThemeProvider: ColorTheme.Provider<OperatorHklColorThemeParams, 'operator-hkl'>;
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../theme';
9
9
  export declare const OperatorNameColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
18
13
  chroma: [number, number];
19
14
  luminance: [number, number];
20
15
  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
23
23
  };
24
24
  export declare type OperatorNameColorThemeParams = typeof OperatorNameColorThemeParams;
25
25
  export declare function getOperatorNameColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
31
  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare function OperatorNameColorTheme(ctx: ThemeDataContext, props: PD.Values<OperatorNameColorThemeParams>): ColorTheme<OperatorNameColorThemeParams>;
41
41
  export declare const OperatorNameColorThemeProvider: ColorTheme.Provider<OperatorNameColorThemeParams, 'operator-name'>;
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../../mol-theme/theme';
9
9
  export declare const PolymerIdColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
18
13
  chroma: [number, number];
19
14
  luminance: [number, number];
20
15
  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
23
23
  };
24
24
  export declare type PolymerIdColorThemeParams = typeof PolymerIdColorThemeParams;
25
25
  export declare function getPolymerIdColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
31
  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare function PolymerIdColorTheme(ctx: ThemeDataContext, props: PD.Values<PolymerIdColorThemeParams>): ColorTheme<PolymerIdColorThemeParams>;
41
41
  export declare const PolymerIdColorThemeProvider: ColorTheme.Provider<PolymerIdColorThemeParams, 'polymer-id'>;
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../../mol-theme/theme';
9
9
  export declare const PolymerIndexColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
18
13
  chroma: [number, number];
19
14
  luminance: [number, number];
20
15
  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
23
23
  };
24
24
  export declare type PolymerIndexColorThemeParams = typeof PolymerIndexColorThemeParams;
25
25
  export declare function getPolymerIndexColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
31
  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare type PolymerIndexColorThemeProps = PD.Values<typeof PolymerIndexColorThemeParams>;
41
41
  export declare function PolymerIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<PolymerIndexColorThemeParams>): ColorTheme<PolymerIndexColorThemeParams>;
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../../mol-theme/theme';
9
9
  export declare const UnitIndexColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
18
13
  chroma: [number, number];
19
14
  luminance: [number, number];
20
15
  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
23
23
  };
24
24
  export declare type UnitIndexColorThemeParams = typeof UnitIndexColorThemeParams;
25
25
  export declare function getUnitIndexColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
31
  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare function UnitIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<UnitIndexColorThemeParams>): ColorTheme<UnitIndexColorThemeParams>;
41
41
  export declare const UnitIndexColorThemeProvider: ColorTheme.Provider<UnitIndexColorThemeParams, 'unit-index'>;
@@ -56,108 +56,108 @@ declare namespace ColorTheme {
56
56
  export const BuiltIn: {
57
57
  'atom-id': Provider<{
58
58
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
59
- list: {
60
- kind: "interpolate" | "set";
61
- colors: import("../mol-util/color/color").ColorListEntry[];
62
- };
63
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
64
59
  maxCount: number;
65
60
  hue: [number, number];
66
61
  chroma: [number, number];
67
62
  luminance: [number, number];
68
63
  clusteringStepCount: number;
69
64
  minSampleCount: number;
70
- }>, "generate">>;
65
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
66
+ list: {
67
+ kind: "set" | "interpolate";
68
+ colors: import("../mol-util/color/color").ColorListEntry[];
69
+ };
70
+ }>, "colors">>;
71
71
  }, "atom-id">;
72
72
  'carbohydrate-symbol': Provider<{}, "carbohydrate-symbol">;
73
73
  'chain-id': Provider<{
74
74
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
75
- list: {
76
- kind: "interpolate" | "set";
77
- colors: import("../mol-util/color/color").ColorListEntry[];
78
- };
79
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
80
75
  maxCount: number;
81
76
  hue: [number, number];
82
77
  chroma: [number, number];
83
78
  luminance: [number, number];
84
79
  clusteringStepCount: number;
85
80
  minSampleCount: number;
86
- }>, "generate">>;
81
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
82
+ list: {
83
+ kind: "set" | "interpolate";
84
+ colors: import("../mol-util/color/color").ColorListEntry[];
85
+ };
86
+ }>, "colors">>;
87
87
  asymId: PD.Select<"label" | "auth">;
88
88
  }, "chain-id">;
89
89
  'element-index': Provider<{
90
90
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
91
- list: {
92
- kind: "interpolate" | "set";
93
- colors: import("../mol-util/color/color").ColorListEntry[];
94
- };
95
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
96
91
  maxCount: number;
97
92
  hue: [number, number];
98
93
  chroma: [number, number];
99
94
  luminance: [number, number];
100
95
  clusteringStepCount: number;
101
96
  minSampleCount: number;
102
- }>, "generate">>;
97
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
98
+ list: {
99
+ kind: "set" | "interpolate";
100
+ colors: import("../mol-util/color/color").ColorListEntry[];
101
+ };
102
+ }>, "colors">>;
103
103
  }, "element-index">;
104
104
  'element-symbol': Provider<{
105
105
  carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<{
106
106
  palette: PD.NamedParams<PD.Normalize<{
107
- list: any;
108
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
109
107
  maxCount: any;
110
108
  hue: any;
111
109
  chroma: any;
112
110
  luminance: any;
113
111
  clusteringStepCount: any;
114
112
  minSampleCount: any;
115
- }>, "generate">;
113
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
114
+ list: any;
115
+ }>, "colors">;
116
116
  asymId: "label" | "auth";
117
117
  }>, "chain-id"> | PD.NamedParams<PD.Normalize<{
118
118
  palette: PD.NamedParams<PD.Normalize<{
119
- list: any;
120
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
121
119
  maxCount: any;
122
120
  hue: any;
123
121
  chroma: any;
124
122
  luminance: any;
125
123
  clusteringStepCount: any;
126
124
  minSampleCount: any;
127
- }>, "generate">;
125
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
126
+ list: any;
127
+ }>, "colors">;
128
128
  }>, "operator-name"> | PD.NamedParams<PD.Normalize<unknown>, "element-symbol">>;
129
129
  saturation: PD.Numeric;
130
130
  lightness: PD.Numeric;
131
131
  }, "element-symbol">;
132
132
  'entity-id': Provider<{
133
133
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
134
- list: {
135
- kind: "interpolate" | "set";
136
- colors: import("../mol-util/color/color").ColorListEntry[];
137
- };
138
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
139
134
  maxCount: number;
140
135
  hue: [number, number];
141
136
  chroma: [number, number];
142
137
  luminance: [number, number];
143
138
  clusteringStepCount: number;
144
139
  minSampleCount: number;
145
- }>, "generate">>;
146
- }, "entity-id">;
147
- 'entity-source': Provider<{
148
- palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
140
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
149
141
  list: {
150
- kind: "interpolate" | "set";
142
+ kind: "set" | "interpolate";
151
143
  colors: import("../mol-util/color/color").ColorListEntry[];
152
144
  };
153
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
145
+ }>, "colors">>;
146
+ }, "entity-id">;
147
+ 'entity-source': Provider<{
148
+ palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
154
149
  maxCount: number;
155
150
  hue: [number, number];
156
151
  chroma: [number, number];
157
152
  luminance: [number, number];
158
153
  clusteringStepCount: number;
159
154
  minSampleCount: number;
160
- }>, "generate">>;
155
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
156
+ list: {
157
+ kind: "set" | "interpolate";
158
+ colors: import("../mol-util/color/color").ColorListEntry[];
159
+ };
160
+ }>, "colors">>;
161
161
  }, "entity-source">;
162
162
  hydrophobicity: Provider<{
163
163
  list: PD.ColorList;
@@ -165,34 +165,34 @@ declare namespace ColorTheme {
165
165
  }, "hydrophobicity">;
166
166
  illustrative: Provider<{
167
167
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
168
- list: {
169
- kind: "interpolate" | "set";
170
- colors: import("../mol-util/color/color").ColorListEntry[];
171
- };
172
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
173
168
  maxCount: number;
174
169
  hue: [number, number];
175
170
  chroma: [number, number];
176
171
  luminance: [number, number];
177
172
  clusteringStepCount: number;
178
173
  minSampleCount: number;
179
- }>, "generate">>;
174
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
175
+ list: {
176
+ kind: "set" | "interpolate";
177
+ colors: import("../mol-util/color/color").ColorListEntry[];
178
+ };
179
+ }>, "colors">>;
180
180
  asymId: PD.Select<"label" | "auth">;
181
181
  }, "illustrative">;
182
182
  'model-index': Provider<{
183
183
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
184
- list: {
185
- kind: "interpolate" | "set";
186
- colors: import("../mol-util/color/color").ColorListEntry[];
187
- };
188
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
189
184
  maxCount: number;
190
185
  hue: [number, number];
191
186
  chroma: [number, number];
192
187
  luminance: [number, number];
193
188
  clusteringStepCount: number;
194
189
  minSampleCount: number;
195
- }>, "generate">>;
190
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
191
+ list: {
192
+ kind: "set" | "interpolate";
193
+ colors: import("../mol-util/color/color").ColorListEntry[];
194
+ };
195
+ }>, "colors">>;
196
196
  }, "model-index">;
197
197
  'molecule-type': Provider<{
198
198
  saturation: PD.Numeric;
@@ -204,33 +204,33 @@ declare namespace ColorTheme {
204
204
  }, "occupancy">;
205
205
  'operator-hkl': Provider<{
206
206
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
207
- list: {
208
- kind: "interpolate" | "set";
209
- colors: import("../mol-util/color/color").ColorListEntry[];
210
- };
211
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
212
207
  maxCount: number;
213
208
  hue: [number, number];
214
209
  chroma: [number, number];
215
210
  luminance: [number, number];
216
211
  clusteringStepCount: number;
217
212
  minSampleCount: number;
218
- }>, "generate">>;
219
- }, "operator-hkl">;
220
- 'operator-name': Provider<{
221
- palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
213
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
222
214
  list: {
223
- kind: "interpolate" | "set";
215
+ kind: "set" | "interpolate";
224
216
  colors: import("../mol-util/color/color").ColorListEntry[];
225
217
  };
226
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
218
+ }>, "colors">>;
219
+ }, "operator-hkl">;
220
+ 'operator-name': Provider<{
221
+ palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
227
222
  maxCount: number;
228
223
  hue: [number, number];
229
224
  chroma: [number, number];
230
225
  luminance: [number, number];
231
226
  clusteringStepCount: number;
232
227
  minSampleCount: number;
233
- }>, "generate">>;
228
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
229
+ list: {
230
+ kind: "set" | "interpolate";
231
+ colors: import("../mol-util/color/color").ColorListEntry[];
232
+ };
233
+ }>, "colors">>;
234
234
  }, "operator-name">;
235
235
  'partial-charge': Provider<{
236
236
  domain: PD.Interval;
@@ -238,33 +238,33 @@ declare namespace ColorTheme {
238
238
  }, "partial-charge">;
239
239
  'polymer-id': Provider<{
240
240
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
241
- list: {
242
- kind: "interpolate" | "set";
243
- colors: import("../mol-util/color/color").ColorListEntry[];
244
- };
245
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
246
241
  maxCount: number;
247
242
  hue: [number, number];
248
243
  chroma: [number, number];
249
244
  luminance: [number, number];
250
245
  clusteringStepCount: number;
251
246
  minSampleCount: number;
252
- }>, "generate">>;
253
- }, "polymer-id">;
254
- 'polymer-index': Provider<{
255
- palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
247
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
256
248
  list: {
257
- kind: "interpolate" | "set";
249
+ kind: "set" | "interpolate";
258
250
  colors: import("../mol-util/color/color").ColorListEntry[];
259
251
  };
260
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
252
+ }>, "colors">>;
253
+ }, "polymer-id">;
254
+ 'polymer-index': Provider<{
255
+ palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
261
256
  maxCount: number;
262
257
  hue: [number, number];
263
258
  chroma: [number, number];
264
259
  luminance: [number, number];
265
260
  clusteringStepCount: number;
266
261
  minSampleCount: number;
267
- }>, "generate">>;
262
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
263
+ list: {
264
+ kind: "set" | "interpolate";
265
+ colors: import("../mol-util/color/color").ColorListEntry[];
266
+ };
267
+ }>, "colors">>;
268
268
  }, "polymer-index">;
269
269
  'residue-name': Provider<{
270
270
  saturation: PD.Numeric;
@@ -284,18 +284,18 @@ declare namespace ColorTheme {
284
284
  }, "uncertainty">;
285
285
  'unit-index': Provider<{
286
286
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
287
- list: {
288
- kind: "interpolate" | "set";
289
- colors: import("../mol-util/color/color").ColorListEntry[];
290
- };
291
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
292
287
  maxCount: number;
293
288
  hue: [number, number];
294
289
  chroma: [number, number];
295
290
  luminance: [number, number];
296
291
  clusteringStepCount: number;
297
292
  minSampleCount: number;
298
- }>, "generate">>;
293
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
294
+ list: {
295
+ kind: "set" | "interpolate";
296
+ colors: import("../mol-util/color/color").ColorListEntry[];
297
+ };
298
+ }>, "colors">>;
299
299
  }, "unit-index">;
300
300
  uniform: Provider<{
301
301
  value: PD.Color;
@@ -15,33 +15,33 @@ declare const DefaultGetPaletteProps: {
15
15
  declare type GetPaletteProps = typeof DefaultGetPaletteProps;
16
16
  export declare function getPaletteParams(props?: Partial<GetPaletteProps>): {
17
17
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
18
- list: {
19
- kind: "interpolate" | "set";
20
- colors: import("./color").ColorListEntry[];
21
- };
22
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
23
18
  maxCount: number;
24
19
  hue: [number, number];
25
20
  chroma: [number, number];
26
21
  luminance: [number, number];
27
22
  clusteringStepCount: number;
28
23
  minSampleCount: number;
29
- }>, "generate">>;
30
- };
31
- declare const DefaultPaletteProps: PD.Values<{
32
- palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
24
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
33
25
  list: {
34
- kind: "interpolate" | "set";
26
+ kind: "set" | "interpolate";
35
27
  colors: import("./color").ColorListEntry[];
36
28
  };
37
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
29
+ }>, "colors">>;
30
+ };
31
+ declare const DefaultPaletteProps: PD.Values<{
32
+ palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
38
33
  maxCount: number;
39
34
  hue: [number, number];
40
35
  chroma: [number, number];
41
36
  luminance: [number, number];
42
37
  clusteringStepCount: number;
43
38
  minSampleCount: number;
44
- }>, "generate">>;
39
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
40
+ list: {
41
+ kind: "set" | "interpolate";
42
+ colors: import("./color").ColorListEntry[];
43
+ };
44
+ }>, "colors">>;
45
45
  }>;
46
46
  declare type PaletteProps = typeof DefaultPaletteProps;
47
47
  declare const DefaultLabelOptions: {
@@ -201,7 +201,6 @@ function addJsonConfigArgs(parser) {
201
201
  'If a property is not specified, cmd line param/OS variable/default value are used.'
202
202
  ].join('\n'),
203
203
  required: false,
204
- action: 'store_true'
205
204
  });
206
205
  parser.add_argument('--printCfg', { help: 'Print current config for validation and exit.', required: false, action: 'store_true' });
207
206
  parser.add_argument('--cfgTemplate', { help: 'Prints default JSON config template to be modified and exits.', required: false, action: 'store_true' });