molstar 2.3.3 → 2.3.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (355) hide show
  1. package/CHANGELOG.md +18 -2
  2. package/build/viewer/index.html +7 -1
  3. package/build/viewer/molstar.js +1 -1
  4. package/lib/apps/viewer/index.d.ts +6 -4
  5. package/lib/apps/viewer/index.html +7 -1
  6. package/lib/apps/viewer/index.js +8 -4
  7. package/lib/apps/viewer/index.js.map +1 -1
  8. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  9. package/lib/commonjs/apps/viewer/index.d.ts +7 -5
  10. package/lib/commonjs/apps/viewer/index.js +8 -4
  11. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  12. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  13. package/lib/commonjs/extensions/cellpack/model.d.ts +1 -1
  14. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
  15. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  16. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  17. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  18. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  19. package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
  20. package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
  21. package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
  22. package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
  23. package/lib/commonjs/mol-canvas3d/camera.js +21 -1
  24. package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
  25. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
  26. package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
  27. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  28. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  29. package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  30. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
  31. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
  32. package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
  33. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  34. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  35. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
  36. package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
  37. package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
  38. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  39. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
  40. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  41. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
  42. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  43. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  44. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  45. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  46. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  47. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  48. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  49. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  50. package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
  51. package/lib/commonjs/mol-gl/renderer.js +3 -0
  52. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  53. package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
  54. package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
  55. package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
  56. package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
  57. package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
  58. package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
  59. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  60. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
  61. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  62. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +4 -4
  63. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  64. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
  65. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  66. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  67. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
  68. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  69. package/lib/commonjs/mol-math/misc.d.ts +3 -1
  70. package/lib/commonjs/mol-math/misc.js +24 -2
  71. package/lib/commonjs/mol-math/misc.js.map +1 -1
  72. package/lib/commonjs/mol-model/loci.d.ts +32 -32
  73. package/lib/commonjs/mol-model/loci.js +4 -3
  74. package/lib/commonjs/mol-model/loci.js.map +1 -1
  75. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  76. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  77. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
  78. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  79. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  80. package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  81. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
  82. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
  83. package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
  84. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +12 -12
  85. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
  86. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  87. package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
  88. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
  89. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
  90. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  91. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  92. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  93. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
  94. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  95. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  96. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
  97. package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
  98. package/lib/commonjs/mol-plugin/config.d.ts +1 -0
  99. package/lib/commonjs/mol-plugin/config.js +1 -0
  100. package/lib/commonjs/mol-plugin/config.js.map +1 -1
  101. package/lib/commonjs/mol-plugin/context.js +6 -4
  102. package/lib/commonjs/mol-plugin/context.js.map +1 -1
  103. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  104. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  105. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
  106. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
  107. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  108. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +16 -16
  109. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  110. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  111. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
  112. package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
  113. package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
  114. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +2 -2
  115. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
  116. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
  117. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -1
  118. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +2 -2
  119. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
  120. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  121. package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
  122. package/lib/commonjs/mol-repr/structure/registry.d.ts +23 -15
  123. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +9 -6
  124. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +9 -6
  125. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  126. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  127. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +37 -19
  128. package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
  129. package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
  130. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  131. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  132. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +6 -4
  133. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +14 -9
  134. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  135. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +3 -2
  136. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +12 -8
  137. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  138. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +6 -4
  139. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +15 -7
  140. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  141. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +3 -2
  142. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +13 -6
  143. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  144. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
  145. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
  146. package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
  147. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  148. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  149. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  150. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +22 -16
  151. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -0
  152. package/lib/commonjs/mol-repr/structure/visual/util/bond.js.map +1 -1
  153. package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts +2 -2
  154. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +4 -4
  155. package/lib/commonjs/mol-repr/structure/visual/util/link.d.ts +6 -4
  156. package/lib/commonjs/mol-repr/structure/visual/util/link.js +66 -23
  157. package/lib/commonjs/mol-repr/structure/visual/util/link.js.map +1 -1
  158. package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  159. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +5 -5
  160. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +3 -3
  161. package/lib/commonjs/mol-repr/volume/registry.d.ts +4 -4
  162. package/lib/commonjs/mol-repr/volume/slice.d.ts +6 -6
  163. package/lib/commonjs/mol-theme/color/atom-id.d.ts +12 -12
  164. package/lib/commonjs/mol-theme/color/chain-id.d.ts +12 -12
  165. package/lib/commonjs/mol-theme/color/element-index.d.ts +12 -12
  166. package/lib/commonjs/mol-theme/color/element-symbol.d.ts +12 -12
  167. package/lib/commonjs/mol-theme/color/entity-id.d.ts +12 -12
  168. package/lib/commonjs/mol-theme/color/entity-source.d.ts +12 -12
  169. package/lib/commonjs/mol-theme/color/illustrative.d.ts +12 -12
  170. package/lib/commonjs/mol-theme/color/model-index.d.ts +12 -12
  171. package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +12 -12
  172. package/lib/commonjs/mol-theme/color/operator-name.d.ts +12 -12
  173. package/lib/commonjs/mol-theme/color/polymer-id.d.ts +12 -12
  174. package/lib/commonjs/mol-theme/color/polymer-index.d.ts +12 -12
  175. package/lib/commonjs/mol-theme/color/unit-index.d.ts +12 -12
  176. package/lib/commonjs/mol-theme/color.d.ts +78 -78
  177. package/lib/commonjs/mol-util/color/palette.d.ts +12 -12
  178. package/lib/commonjs/servers/model/config.js +0 -1
  179. package/lib/commonjs/servers/model/config.js.map +1 -1
  180. package/lib/commonjs/servers/volume/config.js +0 -1
  181. package/lib/commonjs/servers/volume/config.js.map +1 -1
  182. package/lib/extensions/cellpack/model.d.ts +1 -1
  183. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  184. package/lib/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  185. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  186. package/lib/extensions/rcsb/validation-report/representation.js +2 -2
  187. package/lib/mol-canvas3d/camera/util.d.ts +4 -3
  188. package/lib/mol-canvas3d/camera/util.js +15 -16
  189. package/lib/mol-canvas3d/camera/util.js.map +1 -1
  190. package/lib/mol-canvas3d/camera.d.ts +11 -3
  191. package/lib/mol-canvas3d/camera.js +22 -2
  192. package/lib/mol-canvas3d/camera.js.map +1 -1
  193. package/lib/mol-canvas3d/canvas3d.d.ts +14 -4
  194. package/lib/mol-canvas3d/canvas3d.js +9 -3
  195. package/lib/mol-canvas3d/canvas3d.js.map +1 -1
  196. package/lib/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  197. package/lib/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  198. package/lib/mol-canvas3d/helper/interaction-events.js +43 -9
  199. package/lib/mol-canvas3d/helper/interaction-events.js.map +1 -1
  200. package/lib/mol-canvas3d/passes/draw.js +1 -0
  201. package/lib/mol-canvas3d/passes/draw.js.map +1 -1
  202. package/lib/mol-canvas3d/passes/image.d.ts +2 -2
  203. package/lib/mol-canvas3d/passes/pick.d.ts +5 -2
  204. package/lib/mol-canvas3d/passes/pick.js +17 -3
  205. package/lib/mol-canvas3d/passes/pick.js.map +1 -1
  206. package/lib/mol-data/int/impl/ordered-set.d.ts +3 -3
  207. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  208. package/lib/mol-geo/geometry/direct-volume/direct-volume.js +12 -3
  209. package/lib/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  210. package/lib/mol-geo/geometry/image/image.d.ts +2 -2
  211. package/lib/mol-geo/geometry/image/image.js +5 -2
  212. package/lib/mol-geo/geometry/image/image.js.map +1 -1
  213. package/lib/mol-geo/geometry/lines/lines.js +1 -1
  214. package/lib/mol-geo/geometry/lines/lines.js.map +1 -1
  215. package/lib/mol-geo/geometry/points/points.js +1 -1
  216. package/lib/mol-geo/geometry/points/points.js.map +1 -1
  217. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  218. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  219. package/lib/mol-gl/renderer.d.ts +3 -2
  220. package/lib/mol-gl/renderer.js +3 -0
  221. package/lib/mol-gl/renderer.js.map +1 -1
  222. package/lib/mol-gl/shader/lines.vert.d.ts +1 -1
  223. package/lib/mol-gl/shader/lines.vert.js +1 -1
  224. package/lib/mol-gl/shader/lines.vert.js.map +1 -1
  225. package/lib/mol-gl/shader/points.vert.d.ts +1 -1
  226. package/lib/mol-gl/shader/points.vert.js +1 -1
  227. package/lib/mol-gl/shader/points.vert.js.map +1 -1
  228. package/lib/mol-gl/webgl/context.d.ts +1 -1
  229. package/lib/mol-io/reader/cif/schema/bird.d.ts +5 -5
  230. package/lib/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  231. package/lib/mol-io/reader/cif/schema/density-server.d.ts +4 -4
  232. package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  233. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +23 -23
  234. package/lib/mol-io/reader/ply/schema.d.ts +1 -1
  235. package/lib/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  236. package/lib/mol-math/linear-algebra/3d/vec3.js +11 -3
  237. package/lib/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  238. package/lib/mol-math/misc.d.ts +3 -1
  239. package/lib/mol-math/misc.js +22 -1
  240. package/lib/mol-math/misc.js.map +1 -1
  241. package/lib/mol-model/loci.d.ts +32 -32
  242. package/lib/mol-model/loci.js +4 -3
  243. package/lib/mol-model/loci.js.map +1 -1
  244. package/lib/mol-model/shape/shape.d.ts +1 -1
  245. package/lib/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  246. package/lib/mol-model/structure/structure/properties.d.ts +3 -3
  247. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  248. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  249. package/lib/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  250. package/lib/mol-model/structure/structure/unit/bonds.js +7 -2
  251. package/lib/mol-model/structure/structure/unit/bonds.js.map +1 -1
  252. package/lib/mol-model/structure/structure/unit.d.ts +2 -2
  253. package/lib/mol-model-formats/shape/ply.d.ts +12 -12
  254. package/lib/mol-model-formats/structure/basic/schema.d.ts +6 -6
  255. package/lib/mol-model-formats/structure/common/component.d.ts +8 -8
  256. package/lib/mol-model-formats/structure/common/entity.d.ts +1 -1
  257. package/lib/mol-model-formats/structure/pdb/entity.js +29 -3
  258. package/lib/mol-model-formats/structure/pdb/entity.js.map +1 -1
  259. package/lib/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  260. package/lib/mol-plugin/behavior/behavior.d.ts +1 -1
  261. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  262. package/lib/mol-plugin/behavior/dynamic/representation.js +23 -9
  263. package/lib/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  264. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  265. package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
  266. package/lib/mol-plugin/commands.d.ts +6 -2
  267. package/lib/mol-plugin/config.d.ts +1 -0
  268. package/lib/mol-plugin/config.js +1 -0
  269. package/lib/mol-plugin/config.js.map +1 -1
  270. package/lib/mol-plugin/context.js +6 -4
  271. package/lib/mol-plugin/context.js.map +1 -1
  272. package/lib/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  273. package/lib/mol-plugin/version.js +2 -2
  274. package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  275. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
  276. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
  277. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  278. package/lib/mol-plugin-state/formats/volume.d.ts +16 -16
  279. package/lib/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  280. package/lib/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  281. package/lib/mol-plugin-state/manager/interactivity.d.ts +2 -2
  282. package/lib/mol-plugin-state/manager/interactivity.js +12 -11
  283. package/lib/mol-plugin-state/manager/interactivity.js.map +1 -1
  284. package/lib/mol-plugin-state/manager/structure/selection.d.ts +2 -2
  285. package/lib/mol-plugin-state/transforms/data.d.ts +1 -1
  286. package/lib/mol-plugin-state/transforms/model.d.ts +9 -9
  287. package/lib/mol-plugin-state/transforms/representation.d.ts +2 -2
  288. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
  289. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
  290. package/lib/mol-repr/structure/complex-visual.d.ts +1 -1
  291. package/lib/mol-repr/structure/params.d.ts +1 -1
  292. package/lib/mol-repr/structure/registry.d.ts +19 -11
  293. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  294. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  295. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  296. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  297. package/lib/mol-repr/structure/representation/label.d.ts +3 -3
  298. package/lib/mol-repr/structure/representation/line.d.ts +34 -16
  299. package/lib/mol-repr/structure/representation/line.js +10 -4
  300. package/lib/mol-repr/structure/representation/line.js.map +1 -1
  301. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  302. package/lib/mol-repr/structure/units-visual.d.ts +1 -1
  303. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  304. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +14 -9
  305. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  306. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  307. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +12 -8
  308. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  309. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  310. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +15 -7
  311. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  312. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  313. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +13 -6
  314. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  315. package/lib/mol-repr/structure/visual/element-cross.d.ts +26 -0
  316. package/lib/mol-repr/structure/visual/element-cross.js +72 -0
  317. package/lib/mol-repr/structure/visual/element-cross.js.map +1 -0
  318. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  319. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  320. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -1
  321. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  322. package/lib/mol-repr/structure/visual/util/bond.d.ts +10 -4
  323. package/lib/mol-repr/structure/visual/util/bond.js +1 -0
  324. package/lib/mol-repr/structure/visual/util/bond.js.map +1 -1
  325. package/lib/mol-repr/structure/visual/util/color.d.ts +2 -2
  326. package/lib/mol-repr/structure/visual/util/element.d.ts +4 -4
  327. package/lib/mol-repr/structure/visual/util/link.d.ts +6 -4
  328. package/lib/mol-repr/structure/visual/util/link.js +66 -23
  329. package/lib/mol-repr/structure/visual/util/link.js.map +1 -1
  330. package/lib/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  331. package/lib/mol-repr/volume/direct-volume.d.ts +5 -5
  332. package/lib/mol-repr/volume/isosurface.d.ts +3 -3
  333. package/lib/mol-repr/volume/registry.d.ts +4 -4
  334. package/lib/mol-repr/volume/slice.d.ts +6 -6
  335. package/lib/mol-theme/color/atom-id.d.ts +12 -12
  336. package/lib/mol-theme/color/chain-id.d.ts +12 -12
  337. package/lib/mol-theme/color/element-index.d.ts +12 -12
  338. package/lib/mol-theme/color/element-symbol.d.ts +12 -12
  339. package/lib/mol-theme/color/entity-id.d.ts +12 -12
  340. package/lib/mol-theme/color/entity-source.d.ts +12 -12
  341. package/lib/mol-theme/color/illustrative.d.ts +12 -12
  342. package/lib/mol-theme/color/model-index.d.ts +12 -12
  343. package/lib/mol-theme/color/operator-hkl.d.ts +12 -12
  344. package/lib/mol-theme/color/operator-name.d.ts +12 -12
  345. package/lib/mol-theme/color/polymer-id.d.ts +12 -12
  346. package/lib/mol-theme/color/polymer-index.d.ts +12 -12
  347. package/lib/mol-theme/color/unit-index.d.ts +12 -12
  348. package/lib/mol-theme/color.d.ts +78 -78
  349. package/lib/mol-util/color/palette.d.ts +12 -12
  350. package/lib/servers/model/config.js +0 -1
  351. package/lib/servers/model/config.js.map +1 -1
  352. package/lib/servers/volume/config.js +0 -1
  353. package/lib/servers/volume/config.js.map +1 -1
  354. package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
  355. package/package.json +18 -18
@@ -84,19 +84,19 @@ declare type StructureFromModel = typeof StructureFromModel;
84
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  declare const StructureFromModel: StateTransformer<SO.Molecule.Model, SO.Molecule.Structure, PD.Normalize<{
85
85
  type: PD.NamedParams<PD.Normalize<{
86
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  dynamicBonds: any;
87
- }>, "auto"> | PD.NamedParams<PD.Normalize<{
88
- dynamicBonds: any;
89
- }>, "model"> | PD.NamedParams<PD.Normalize<{
87
+ ijkMin: any;
88
+ ijkMax: any;
89
+ }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
90
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  dynamicBonds: any;
91
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  id: any;
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  }>, "assembly"> | PD.NamedParams<PD.Normalize<{
93
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  dynamicBonds: any;
94
+ }>, "auto"> | PD.NamedParams<PD.Normalize<{
95
+ dynamicBonds: any;
96
+ }>, "model"> | PD.NamedParams<PD.Normalize<{
97
+ dynamicBonds: any;
94
98
  radius: any;
95
99
  }>, "symmetry-mates"> | PD.NamedParams<PD.Normalize<{
96
- dynamicBonds: any;
97
- ijkMin: any;
98
- ijkMax: any;
99
- }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
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  dynamicBonds: any;
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  generators: any;
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  }>, "symmetry-assembly">;
@@ -154,11 +154,11 @@ export declare const StructureComplexElementTypes: {
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  export declare type StructureComplexElementTypes = keyof typeof StructureComplexElementTypes;
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  declare type StructureComplexElement = typeof StructureComplexElement;
156
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  declare const StructureComplexElement: StateTransformer<SO.Molecule.Structure, SO.Molecule.Structure, PD.Normalize<{
157
- type: "spheres" | "polymer" | "protein" | "nucleic" | "water" | "branched" | "ligand" | "non-standard" | "coarse" | "atomic-sequence" | "atomic-het";
157
+ type: "polymer" | "water" | "branched" | "ligand" | "spheres" | "protein" | "nucleic" | "non-standard" | "coarse" | "atomic-sequence" | "atomic-het";
158
158
  }>>;
159
159
  declare type StructureComponent = typeof StructureComponent;
160
160
  declare const StructureComponent: StateTransformer<SO.Molecule.Structure, SO.Molecule.Structure, PD.Normalize<{
161
- type: PD.NamedParams<Script, "script"> | PD.NamedParams<"all" | "polymer" | "protein" | "nucleic" | "water" | "ion" | "lipid" | "branched" | "ligand" | "non-standard" | "coarse", "static"> | PD.NamedParams<Expression, "expression"> | PD.NamedParams<StructureElement.Bundle, "bundle">;
161
+ type: PD.NamedParams<Script, "script"> | PD.NamedParams<"polymer" | "water" | "branched" | "ligand" | "ion" | "all" | "protein" | "nucleic" | "lipid" | "non-standard" | "coarse", "static"> | PD.NamedParams<Expression, "expression"> | PD.NamedParams<StructureElement.Bundle, "bundle">;
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  nullIfEmpty: boolean | undefined;
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  label: string;
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164
  }>>;
@@ -118,7 +118,7 @@ declare const ModelUnitcell3D: StateTransformer<SO.Molecule.Model, SO.Shape.Repr
118
118
  cellColor: Color;
119
119
  cellScale: number;
120
120
  ref: "model" | "origin";
121
- attachment: "corner" | "center";
121
+ attachment: "center" | "corner";
122
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  doubleSided: boolean;
123
123
  flipSided: boolean;
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  flatShaded: boolean;
@@ -287,7 +287,7 @@ declare const StructureSelectionsLabel3D: StateTransformer<SO.Molecule.Structure
287
287
  export { StructureSelectionsOrientation3D };
288
288
  declare type StructureSelectionsOrientation3D = typeof StructureSelectionsOrientation3D;
289
289
  declare const StructureSelectionsOrientation3D: StateTransformer<SO.Molecule.Structure.Selections, SO.Shape.Representation3D, PD.Normalize<{
290
- visuals: ("box" | "axes" | "ellipsoid")[];
290
+ visuals: ("axes" | "ellipsoid" | "box")[];
291
291
  color: Color;
292
292
  scale: number;
293
293
  doubleSided: boolean;
@@ -10,7 +10,7 @@ export interface OrientationData {
10
10
  locis: Loci[];
11
11
  }
12
12
  export declare const OrientationParams: {
13
- visuals: PD.MultiSelect<"box" | "axes" | "ellipsoid">;
13
+ visuals: PD.MultiSelect<"axes" | "ellipsoid" | "box">;
14
14
  color: PD.Color;
15
15
  scale: PD.Numeric;
16
16
  doubleSided: PD.BooleanParam;
@@ -15,7 +15,7 @@ export declare const UnitcellParams: {
15
15
  cellColor: PD.Color;
16
16
  cellScale: PD.Numeric;
17
17
  ref: PD.Select<"model" | "origin">;
18
- attachment: PD.Select<"corner" | "center">;
18
+ attachment: PD.Select<"center" | "corner">;
19
19
  doubleSided: PD.BooleanParam;
20
20
  flipSided: PD.BooleanParam;
21
21
  flatShaded: PD.BooleanParam;
@@ -121,7 +121,7 @@ export declare const ComplexDirectVolumeParams: {
121
121
  renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
122
122
  controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
123
123
  list: {
124
- kind: "interpolate" | "set";
124
+ kind: "set" | "interpolate";
125
125
  colors: import("../../mol-util/color/color").ColorListEntry[];
126
126
  };
127
127
  }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -89,7 +89,7 @@ export declare const StructureDirectVolumeParams: {
89
89
  renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
90
90
  controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
91
91
  list: {
92
- kind: "interpolate" | "set";
92
+ kind: "set" | "interpolate";
93
93
  colors: import("../../mol-util/color/color").ColorListEntry[];
94
94
  };
95
95
  }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -59,6 +59,7 @@ export declare namespace StructureRepresentationRegistry {
59
59
  excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
60
60
  ignoreHydrogens: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
61
61
  aromaticBonds: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
62
+ multipleBonds: import("../../mol-util/param-definition").ParamDefinition.Select<"off" | "symmetric" | "offset">;
62
63
  linkScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
63
64
  linkSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
64
65
  linkCap: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
@@ -114,6 +115,7 @@ export declare namespace StructureRepresentationRegistry {
114
115
  excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
115
116
  ignoreHydrogens: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
116
117
  aromaticBonds: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
118
+ multipleBonds: import("../../mol-util/param-definition").ParamDefinition.Select<"off" | "symmetric" | "offset">;
117
119
  linkScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
118
120
  linkSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
119
121
  dashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -144,10 +146,10 @@ export declare namespace StructureRepresentationRegistry {
144
146
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
145
147
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
146
148
  tryUseGpu: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
147
- smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "off"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
149
+ smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
148
150
  resolutionFactor: number;
149
151
  sampleStride: number;
150
- }>, "on">>;
152
+ }>, "on"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "off">>;
151
153
  doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
152
154
  flipSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
153
155
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
@@ -171,7 +173,7 @@ export declare namespace StructureRepresentationRegistry {
171
173
  renderMode: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
172
174
  controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
173
175
  list: {
174
- kind: "interpolate" | "set";
176
+ kind: "set" | "interpolate";
175
177
  colors: import("../../mol-util/color/color").ColorListEntry[];
176
178
  };
177
179
  }>, "volume"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
@@ -195,7 +197,7 @@ export declare namespace StructureRepresentationRegistry {
195
197
  backgroundMargin: import("../../mol-util/param-definition").ParamDefinition.Numeric;
196
198
  backgroundColor: import("../../mol-util/param-definition").ParamDefinition.Color;
197
199
  backgroundOpacity: import("../../mol-util/param-definition").ParamDefinition.Numeric;
198
- level: import("../../mol-util/param-definition").ParamDefinition.Select<"residue" | "element" | "chain">;
200
+ level: import("../../mol-util/param-definition").ParamDefinition.Select<"residue" | "chain" | "element">;
199
201
  chainScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
200
202
  residueScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
201
203
  elementScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -220,20 +222,26 @@ export declare namespace StructureRepresentationRegistry {
220
222
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
221
223
  }, "label">;
222
224
  line: import("./representation").StructureRepresentationProvider<{
225
+ multipleBonds: import("../../mol-util/param-definition").ParamDefinition.Select<"off" | "symmetric" | "offset">;
223
226
  includeParent: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
224
227
  sizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
225
228
  unitKinds: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"spheres" | "atomic" | "gaussians">;
226
- visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"intra-bond" | "inter-bond">;
229
+ visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
230
+ lineSizeAttenuation: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
231
+ ignoreHydrogens: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
232
+ traceOnly: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
233
+ crosses: import("../../mol-util/param-definition").ParamDefinition.Select<"all" | "lone">;
234
+ crossSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
235
+ alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
236
+ quality: import("../../mol-util/param-definition").ParamDefinition.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
237
+ pointSizeAttenuation: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
238
+ pointStyle: import("../../mol-util/param-definition").ParamDefinition.Select<"square" | "circle" | "fuzzy">;
227
239
  includeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
228
240
  excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
229
- ignoreHydrogens: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
230
241
  aromaticBonds: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
231
242
  linkScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
232
243
  linkSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
233
244
  dashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
234
- lineSizeAttenuation: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
235
- alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
236
- quality: import("../../mol-util/param-definition").ParamDefinition.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
237
245
  }, "line">;
238
246
  'molecular-surface': import("./representation").StructureRepresentationProvider<{
239
247
  visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"molecular-surface-mesh" | "molecular-surface-wireframe">;
@@ -248,10 +256,10 @@ export declare namespace StructureRepresentationRegistry {
248
256
  lineSizeAttenuation: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
249
257
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
250
258
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
251
- smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "off"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
259
+ smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
252
260
  resolutionFactor: number;
253
261
  sampleStride: number;
254
- }>, "on">>;
262
+ }>, "on"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "off">>;
255
263
  doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
256
264
  flipSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
257
265
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
@@ -20,6 +20,7 @@ export declare const BallAndStickParams: {
20
20
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
21
21
  ignoreHydrogens: PD.BooleanParam;
22
22
  aromaticBonds: PD.BooleanParam;
23
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
23
24
  linkScale: PD.Numeric;
24
25
  linkSpacing: PD.Numeric;
25
26
  linkCap: PD.BooleanParam;
@@ -51,6 +52,7 @@ export declare function getBallAndStickParams(ctx: ThemeRegistryContext, structu
51
52
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
52
53
  ignoreHydrogens: PD.BooleanParam;
53
54
  aromaticBonds: PD.BooleanParam;
55
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
54
56
  linkScale: PD.Numeric;
55
57
  linkSpacing: PD.Numeric;
56
58
  linkCap: PD.BooleanParam;
@@ -83,6 +85,7 @@ export declare const BallAndStickRepresentationProvider: StructureRepresentation
83
85
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
84
86
  ignoreHydrogens: PD.BooleanParam;
85
87
  aromaticBonds: PD.BooleanParam;
88
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
86
89
  linkScale: PD.Numeric;
87
90
  linkSpacing: PD.Numeric;
88
91
  linkCap: PD.BooleanParam;
@@ -21,6 +21,7 @@ export declare const EllipsoidParams: {
21
21
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
22
22
  ignoreHydrogens: PD.BooleanParam;
23
23
  aromaticBonds: PD.BooleanParam;
24
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
24
25
  linkScale: PD.Numeric;
25
26
  linkSpacing: PD.Numeric;
26
27
  dashCount: PD.Numeric;
@@ -51,6 +52,7 @@ export declare function getEllipsoidParams(ctx: ThemeRegistryContext, structure:
51
52
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
52
53
  ignoreHydrogens: PD.BooleanParam;
53
54
  aromaticBonds: PD.BooleanParam;
55
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
54
56
  linkScale: PD.Numeric;
55
57
  linkSpacing: PD.Numeric;
56
58
  dashCount: PD.Numeric;
@@ -82,6 +84,7 @@ export declare const EllipsoidRepresentationProvider: StructureRepresentationPro
82
84
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
83
85
  ignoreHydrogens: PD.BooleanParam;
84
86
  aromaticBonds: PD.BooleanParam;
87
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
85
88
  linkScale: PD.Numeric;
86
89
  linkSpacing: PD.Numeric;
87
90
  dashCount: PD.Numeric;
@@ -22,10 +22,10 @@ export declare const GaussianSurfaceParams: {
22
22
  alpha: PD.Numeric;
23
23
  quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
24
24
  tryUseGpu: PD.BooleanParam;
25
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
25
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
26
26
  resolutionFactor: number;
27
27
  sampleStride: number;
28
- }>, "on">>;
28
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
29
29
  doubleSided: PD.BooleanParam;
30
30
  flipSided: PD.BooleanParam;
31
31
  flatShaded: PD.BooleanParam;
@@ -47,10 +47,10 @@ export declare function getGaussianSurfaceParams(ctx: ThemeRegistryContext, stru
47
47
  alpha: PD.Numeric;
48
48
  quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
49
49
  tryUseGpu: PD.BooleanParam;
50
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
50
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
51
51
  resolutionFactor: number;
52
52
  sampleStride: number;
53
- }>, "on">>;
53
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
54
54
  doubleSided: PD.BooleanParam;
55
55
  flipSided: PD.BooleanParam;
56
56
  flatShaded: PD.BooleanParam;
@@ -73,10 +73,10 @@ export declare const GaussianSurfaceRepresentationProvider: StructureRepresentat
73
73
  alpha: PD.Numeric;
74
74
  quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
75
75
  tryUseGpu: PD.BooleanParam;
76
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
76
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
77
77
  resolutionFactor: number;
78
78
  sampleStride: number;
79
- }>, "on">>;
79
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
80
80
  doubleSided: PD.BooleanParam;
81
81
  flipSided: PD.BooleanParam;
82
82
  flatShaded: PD.BooleanParam;
@@ -25,7 +25,7 @@ export declare const GaussianVolumeParams: {
25
25
  renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
26
26
  controlPoints: import("../../../mol-math/linear-algebra/3d/vec2").Vec2[];
27
27
  list: {
28
- kind: "interpolate" | "set";
28
+ kind: "set" | "interpolate";
29
29
  colors: import("../../../mol-util/color/color").ColorListEntry[];
30
30
  };
31
31
  }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -61,7 +61,7 @@ export declare function getGaussianVolumeParams(ctx: ThemeRegistryContext, struc
61
61
  renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
62
62
  controlPoints: import("../../../mol-math/linear-algebra/3d/vec2").Vec2[];
63
63
  list: {
64
- kind: "interpolate" | "set";
64
+ kind: "set" | "interpolate";
65
65
  colors: import("../../../mol-util/color/color").ColorListEntry[];
66
66
  };
67
67
  }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -98,7 +98,7 @@ export declare const GaussianVolumeRepresentationProvider: StructureRepresentati
98
98
  renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
99
99
  controlPoints: import("../../../mol-math/linear-algebra/3d/vec2").Vec2[];
100
100
  list: {
101
- kind: "interpolate" | "set";
101
+ kind: "set" | "interpolate";
102
102
  colors: import("../../../mol-util/color/color").ColorListEntry[];
103
103
  };
104
104
  }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -14,7 +14,7 @@ export declare const LabelParams: {
14
14
  backgroundMargin: PD.Numeric;
15
15
  backgroundColor: PD.Color;
16
16
  backgroundOpacity: PD.Numeric;
17
- level: PD.Select<"residue" | "element" | "chain">;
17
+ level: PD.Select<"residue" | "chain" | "element">;
18
18
  chainScale: PD.Numeric;
19
19
  residueScale: PD.Numeric;
20
20
  elementScale: PD.Numeric;
@@ -45,7 +45,7 @@ export declare function getLabelParams(ctx: ThemeRegistryContext, structure: Str
45
45
  backgroundMargin: PD.Numeric;
46
46
  backgroundColor: PD.Color;
47
47
  backgroundOpacity: PD.Numeric;
48
- level: PD.Select<"residue" | "element" | "chain">;
48
+ level: PD.Select<"residue" | "chain" | "element">;
49
49
  chainScale: PD.Numeric;
50
50
  residueScale: PD.Numeric;
51
51
  elementScale: PD.Numeric;
@@ -77,7 +77,7 @@ export declare const LabelRepresentationProvider: StructureRepresentationProvide
77
77
  backgroundMargin: PD.Numeric;
78
78
  backgroundColor: PD.Color;
79
79
  backgroundOpacity: PD.Numeric;
80
- level: PD.Select<"residue" | "element" | "chain">;
80
+ level: PD.Select<"residue" | "chain" | "element">;
81
81
  chainScale: PD.Numeric;
82
82
  residueScale: PD.Numeric;
83
83
  elementScale: PD.Numeric;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -9,53 +9,71 @@ import { RepresentationParamsGetter, RepresentationContext } from '../../../mol-
9
9
  import { ThemeRegistryContext } from '../../../mol-theme/theme';
10
10
  import { Structure } from '../../../mol-model/structure';
11
11
  export declare const LineParams: {
12
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
12
13
  includeParent: PD.BooleanParam;
13
14
  sizeFactor: PD.Numeric;
14
15
  unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
15
- visuals: PD.MultiSelect<"intra-bond" | "inter-bond">;
16
+ visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
17
+ lineSizeAttenuation: PD.BooleanParam;
18
+ ignoreHydrogens: PD.BooleanParam;
19
+ traceOnly: PD.BooleanParam;
20
+ crosses: PD.Select<"all" | "lone">;
21
+ crossSize: PD.Numeric;
22
+ alpha: PD.Numeric;
23
+ quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
24
+ pointSizeAttenuation: PD.BooleanParam;
25
+ pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
16
26
  includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
17
27
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
18
- ignoreHydrogens: PD.BooleanParam;
19
28
  aromaticBonds: PD.BooleanParam;
20
29
  linkScale: PD.Numeric;
21
30
  linkSpacing: PD.Numeric;
22
31
  dashCount: PD.Numeric;
23
- lineSizeAttenuation: PD.BooleanParam;
24
- alpha: PD.Numeric;
25
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
26
32
  };
27
33
  export declare type LineParams = typeof LineParams;
28
34
  export declare function getLineParams(ctx: ThemeRegistryContext, structure: Structure): {
35
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
29
36
  includeParent: PD.BooleanParam;
30
37
  sizeFactor: PD.Numeric;
31
38
  unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
32
- visuals: PD.MultiSelect<"intra-bond" | "inter-bond">;
39
+ visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
40
+ lineSizeAttenuation: PD.BooleanParam;
41
+ ignoreHydrogens: PD.BooleanParam;
42
+ traceOnly: PD.BooleanParam;
43
+ crosses: PD.Select<"all" | "lone">;
44
+ crossSize: PD.Numeric;
45
+ alpha: PD.Numeric;
46
+ quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
47
+ pointSizeAttenuation: PD.BooleanParam;
48
+ pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
33
49
  includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
34
50
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
35
- ignoreHydrogens: PD.BooleanParam;
36
51
  aromaticBonds: PD.BooleanParam;
37
52
  linkScale: PD.Numeric;
38
53
  linkSpacing: PD.Numeric;
39
54
  dashCount: PD.Numeric;
40
- lineSizeAttenuation: PD.BooleanParam;
41
- alpha: PD.Numeric;
42
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
43
55
  };
44
56
  export declare type LineRepresentation = StructureRepresentation<LineParams>;
45
57
  export declare function LineRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, LineParams>): LineRepresentation;
46
58
  export declare const LineRepresentationProvider: StructureRepresentationProvider<{
59
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
47
60
  includeParent: PD.BooleanParam;
48
61
  sizeFactor: PD.Numeric;
49
62
  unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
50
- visuals: PD.MultiSelect<"intra-bond" | "inter-bond">;
63
+ visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
64
+ lineSizeAttenuation: PD.BooleanParam;
65
+ ignoreHydrogens: PD.BooleanParam;
66
+ traceOnly: PD.BooleanParam;
67
+ crosses: PD.Select<"all" | "lone">;
68
+ crossSize: PD.Numeric;
69
+ alpha: PD.Numeric;
70
+ quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
71
+ pointSizeAttenuation: PD.BooleanParam;
72
+ pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
51
73
  includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
52
74
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
53
- ignoreHydrogens: PD.BooleanParam;
54
75
  aromaticBonds: PD.BooleanParam;
55
76
  linkScale: PD.Numeric;
56
77
  linkSpacing: PD.Numeric;
57
78
  dashCount: PD.Numeric;
58
- lineSizeAttenuation: PD.BooleanParam;
59
- alpha: PD.Numeric;
60
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
61
79
  }, "line">;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -12,13 +12,19 @@ import { ComplexRepresentation } from '../complex-representation';
12
12
  import { StructureRepresentationProvider, StructureRepresentationStateBuilder } from '../representation';
13
13
  import { Representation } from '../../../mol-repr/representation';
14
14
  import { getUnitKindsParam } from '../params';
15
+ import { ElementPointParams, ElementPointVisual } from '../visual/element-point';
16
+ import { ElementCrossParams, ElementCrossVisual } from '../visual/element-cross';
15
17
  var LineVisuals = {
16
18
  'intra-bond': function (ctx, getParams) { return UnitsRepresentation('Intra-unit bond line', ctx, getParams, IntraUnitBondLineVisual); },
17
19
  'inter-bond': function (ctx, getParams) { return ComplexRepresentation('Inter-unit bond line', ctx, getParams, InterUnitBondLineVisual); },
20
+ 'element-point': function (ctx, getParams) { return UnitsRepresentation('Points', ctx, getParams, ElementPointVisual); },
21
+ 'element-cross': function (ctx, getParams) { return UnitsRepresentation('Crosses', ctx, getParams, ElementCrossVisual); },
18
22
  };
19
- export var LineParams = __assign(__assign(__assign({}, IntraUnitBondLineParams), InterUnitBondLineParams), { includeParent: PD.Boolean(false), sizeFactor: PD.Numeric(1.5, { min: 0.01, max: 10, step: 0.01 }), unitKinds: getUnitKindsParam(['atomic']), visuals: PD.MultiSelect(['intra-bond', 'inter-bond'], PD.objectToOptions(LineVisuals)) });
23
+ export var LineParams = __assign(__assign(__assign(__assign(__assign({}, IntraUnitBondLineParams), InterUnitBondLineParams), ElementPointParams), ElementCrossParams), { multipleBonds: PD.Select('offset', PD.arrayToOptions(['off', 'symmetric', 'offset'])), includeParent: PD.Boolean(false), sizeFactor: PD.Numeric(3, { min: 0.01, max: 10, step: 0.01 }), unitKinds: getUnitKindsParam(['atomic']), visuals: PD.MultiSelect(['intra-bond', 'inter-bond', 'element-point', 'element-cross'], PD.objectToOptions(LineVisuals)) });
20
24
  export function getLineParams(ctx, structure) {
21
- return PD.clone(LineParams);
25
+ var params = PD.clone(LineParams);
26
+ params.pointStyle.defaultValue = 'circle';
27
+ return params;
22
28
  }
23
29
  export function LineRepresentation(ctx, getParams) {
24
30
  return Representation.createMulti('Line', ctx, getParams, StructureRepresentationStateBuilder, LineVisuals);
@@ -26,7 +32,7 @@ export function LineRepresentation(ctx, getParams) {
26
32
  export var LineRepresentationProvider = StructureRepresentationProvider({
27
33
  name: 'line',
28
34
  label: 'Line',
29
- description: 'Displays bonds as lines.',
35
+ description: 'Displays bonds as lines and atoms as points or croses.',
30
36
  factory: LineRepresentation,
31
37
  getParams: getLineParams,
32
38
  defaultValues: PD.getDefaultValues(LineParams),
@@ -1 +1 @@
1
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1
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@@ -21,10 +21,10 @@ export declare const MolecularSurfaceParams: {
21
21
  lineSizeAttenuation: PD.BooleanParam;
22
22
  alpha: PD.Numeric;
23
23
  quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
24
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
24
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
25
25
  resolutionFactor: number;
26
26
  sampleStride: number;
27
- }>, "on">>;
27
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
28
28
  doubleSided: PD.BooleanParam;
29
29
  flipSided: PD.BooleanParam;
30
30
  flatShaded: PD.BooleanParam;
@@ -45,10 +45,10 @@ export declare function getMolecularSurfaceParams(ctx: ThemeRegistryContext, str
45
45
  lineSizeAttenuation: PD.BooleanParam;
46
46
  alpha: PD.Numeric;
47
47
  quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
48
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
48
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
49
49
  resolutionFactor: number;
50
50
  sampleStride: number;
51
- }>, "on">>;
51
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
52
52
  doubleSided: PD.BooleanParam;
53
53
  flipSided: PD.BooleanParam;
54
54
  flatShaded: PD.BooleanParam;
@@ -70,10 +70,10 @@ export declare const MolecularSurfaceRepresentationProvider: StructureRepresenta
70
70
  lineSizeAttenuation: PD.BooleanParam;
71
71
  alpha: PD.Numeric;
72
72
  quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
73
- smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
73
+ smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
74
74
  resolutionFactor: number;
75
75
  sampleStride: number;
76
- }>, "on">>;
76
+ }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
77
77
  doubleSided: PD.BooleanParam;
78
78
  flipSided: PD.BooleanParam;
79
79
  flatShaded: PD.BooleanParam;
@@ -152,7 +152,7 @@ export declare const UnitsDirectVolumeParams: {
152
152
  renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
153
153
  controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
154
154
  list: {
155
- kind: "interpolate" | "set";
155
+ kind: "set" | "interpolate";
156
156
  colors: import("../../mol-util/color/color").ColorListEntry[];
157
157
  };
158
158
  }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -17,6 +17,7 @@ export declare const InterUnitBondCylinderParams: {
17
17
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
18
18
  ignoreHydrogens: PD.BooleanParam;
19
19
  aromaticBonds: PD.BooleanParam;
20
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
20
21
  linkScale: PD.Numeric;
21
22
  linkSpacing: PD.Numeric;
22
23
  linkCap: PD.BooleanParam;
@@ -45,6 +46,7 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
45
46
  excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
46
47
  ignoreHydrogens: PD.BooleanParam;
47
48
  aromaticBonds: PD.BooleanParam;
49
+ multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
48
50
  linkScale: PD.Numeric;
49
51
  linkSpacing: PD.Numeric;
50
52
  linkCap: PD.BooleanParam;
@@ -32,7 +32,9 @@ function getInterUnitBondCylinderBuilderProps(structure, theme, props) {
32
32
  var locB = Bond.Location(structure, undefined, undefined, structure, undefined, undefined);
33
33
  var bonds = structure.interUnitBonds;
34
34
  var edgeCount = bonds.edgeCount, edges = bonds.edges;
35
- var sizeFactor = props.sizeFactor, sizeAspectRatio = props.sizeAspectRatio, adjustCylinderLength = props.adjustCylinderLength, aromaticBonds = props.aromaticBonds;
35
+ var sizeFactor = props.sizeFactor, sizeAspectRatio = props.sizeAspectRatio, adjustCylinderLength = props.adjustCylinderLength, aromaticBonds = props.aromaticBonds, multipleBonds = props.multipleBonds;
36
+ var mbOff = multipleBonds === 'off';
37
+ var mbSymmetric = multipleBonds === 'symmetric';
36
38
  var delta = Vec3();
37
39
  var stub;
38
40
  var child = structure.child;
@@ -118,15 +120,16 @@ function getInterUnitBondCylinderBuilderProps(structure, theme, props) {
118
120
  return 1 /* Dashed */;
119
121
  }
120
122
  else if (o === 3) {
121
- return 3 /* Triple */;
123
+ return mbOff ? 0 /* Solid */ :
124
+ mbSymmetric ? 4 /* Triple */ :
125
+ 5 /* OffsetTriple */;
122
126
  }
123
127
  else if (aromaticBonds && BondType.is(f, 16 /* Aromatic */)) {
124
- return 5 /* Aromatic */;
128
+ return 7 /* Aromatic */;
125
129
  }
126
- else if (o === 2) {
127
- return 2 /* Double */;
128
- }
129
- return 0 /* Solid */;
130
+ return (o !== 2 || mbOff) ? 0 /* Solid */ :
131
+ mbSymmetric ? 2 /* Double */ :
132
+ 3 /* OffsetDouble */;
130
133
  },
131
134
  radius: function (edgeIndex) {
132
135
  return radius(edgeIndex) * sizeAspectRatio;
@@ -180,7 +183,8 @@ export function InterUnitBondCylinderImpostorVisual(materialId) {
180
183
  newProps.stubCap !== currentProps.stubCap ||
181
184
  !arrayEqual(newProps.includeTypes, currentProps.includeTypes) ||
182
185
  !arrayEqual(newProps.excludeTypes, currentProps.excludeTypes) ||
183
- newProps.adjustCylinderLength !== currentProps.adjustCylinderLength);
186
+ newProps.adjustCylinderLength !== currentProps.adjustCylinderLength ||
187
+ newProps.multipleBonds !== currentProps.multipleBonds);
184
188
  if (newStructure.interUnitBonds !== currentStructure.interUnitBonds) {
185
189
  state.createGeometry = true;
186
190
  state.updateTransform = true;
@@ -214,7 +218,8 @@ export function InterUnitBondCylinderMeshVisual(materialId) {
214
218
  newProps.stubCap !== currentProps.stubCap ||
215
219
  !arrayEqual(newProps.includeTypes, currentProps.includeTypes) ||
216
220
  !arrayEqual(newProps.excludeTypes, currentProps.excludeTypes) ||
217
- newProps.adjustCylinderLength !== currentProps.adjustCylinderLength);
221
+ newProps.adjustCylinderLength !== currentProps.adjustCylinderLength ||
222
+ newProps.multipleBonds !== currentProps.multipleBonds);
218
223
  if (newStructure.interUnitBonds !== currentStructure.interUnitBonds) {
219
224
  state.createGeometry = true;
220
225
  state.updateTransform = true;