larvitar 0.18.2 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (229) hide show
  1. package/.github/workflows/deploy.yml +3 -12
  2. package/MIGRATION.md +25 -0
  3. package/README.md +28 -27
  4. package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +171 -0
  5. package/docs/documentation/Tools.Annotation.ContoursTool.html +218 -0
  6. package/docs/documentation/Tools.Annotation.DiameterTool.html +219 -0
  7. package/docs/documentation/Tools.Annotation.SeedsTool.html +214 -0
  8. package/docs/documentation/Tools.Brush.BrushTool.html +218 -0
  9. package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +218 -0
  10. package/docs/documentation/Tools.PolylineScissorsTool.html +218 -0
  11. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
  12. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
  13. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
  14. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
  15. package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
  16. package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
  17. package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
  18. package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
  19. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
  20. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +978 -0
  21. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
  22. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
  23. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
  24. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
  25. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +1049 -0
  26. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
  27. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
  28. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
  29. package/docs/documentation/global.html +1303 -0
  30. package/docs/documentation/imageAnonymization.js.html +245 -0
  31. package/docs/documentation/imageColormaps.js.html +283 -0
  32. package/docs/documentation/imageContours.js.html +278 -0
  33. package/docs/documentation/imageIo.js.html +291 -0
  34. package/docs/documentation/imageLayers.js.html +188 -0
  35. package/docs/documentation/imageLoading.js.html +297 -0
  36. package/docs/documentation/imageParsing.js.html +385 -0
  37. package/docs/documentation/imagePresets.js.html +207 -0
  38. package/docs/documentation/imageRendering.js.html +849 -0
  39. package/docs/documentation/imageReslice.js.html +162 -0
  40. package/docs/documentation/imageStore.js.html +360 -0
  41. package/docs/documentation/imageTools.js.html +784 -0
  42. package/docs/documentation/imageUtils.js.html +1609 -0
  43. package/docs/documentation/image_colormaps.js.html +283 -0
  44. package/docs/documentation/image_contours.js.html +279 -0
  45. package/docs/documentation/image_io.js.html +288 -0
  46. package/docs/documentation/image_layers.js.html +188 -0
  47. package/docs/documentation/image_loading.js.html +294 -0
  48. package/docs/documentation/image_parsing.js.html +391 -0
  49. package/docs/documentation/image_presets.js.html +207 -0
  50. package/docs/documentation/image_rendering.js.html +845 -0
  51. package/docs/documentation/image_reslice.js.html +164 -0
  52. package/docs/documentation/image_store.js.html +359 -0
  53. package/docs/documentation/image_tools.js.html +792 -0
  54. package/docs/documentation/image_utils.js.html +1609 -0
  55. package/docs/documentation/index.html +175 -0
  56. package/docs/documentation/loaders_commonLoader.js.html +306 -0
  57. package/docs/documentation/loaders_dicomLoader.js.html +130 -0
  58. package/docs/documentation/loaders_fileLoader.js.html +155 -0
  59. package/docs/documentation/loaders_multiframeLoader.js.html +443 -0
  60. package/docs/documentation/loaders_niftiLoader.js.html +150 -0
  61. package/docs/documentation/loaders_nrrdLoader.js.html +545 -0
  62. package/docs/documentation/loaders_resliceLoader.js.html +258 -0
  63. package/docs/documentation/module-imaging_contours.html +954 -0
  64. package/docs/documentation/module-imaging_imageAnonymization.html +544 -0
  65. package/docs/documentation/module-imaging_imageColormaps.html +1012 -0
  66. package/docs/documentation/module-imaging_imageContours.html +954 -0
  67. package/docs/documentation/module-imaging_imageIo.html +1057 -0
  68. package/docs/documentation/module-imaging_imageLayers.html +904 -0
  69. package/docs/documentation/module-imaging_imageLoading.html +1301 -0
  70. package/docs/documentation/module-imaging_imageParsing.html +1356 -0
  71. package/docs/documentation/module-imaging_imagePresets.html +679 -0
  72. package/docs/documentation/module-imaging_imageRendering.html +3223 -0
  73. package/docs/documentation/module-imaging_imageReslice.html +413 -0
  74. package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +284 -0
  75. package/docs/documentation/module-imaging_imageStore.html +1560 -0
  76. package/docs/documentation/module-imaging_imageTools.html +3617 -0
  77. package/docs/documentation/module-imaging_imageUtils.html +7253 -0
  78. package/docs/documentation/module-imaging_io.html +1057 -0
  79. package/docs/documentation/module-imaging_layers.html +904 -0
  80. package/docs/documentation/module-imaging_loading.html +1301 -0
  81. package/docs/documentation/module-imaging_parsing.html +1375 -0
  82. package/docs/documentation/module-imaging_presets.html +679 -0
  83. package/docs/documentation/module-imaging_rendering.html +8094 -0
  84. package/docs/documentation/module-imaging_reslice.html +411 -0
  85. package/docs/documentation/module-imaging_store-Larvitar_Store.html +284 -0
  86. package/docs/documentation/module-imaging_store.html +1537 -0
  87. package/docs/documentation/module-imaging_strategies_eraseFreehand.html +708 -0
  88. package/docs/documentation/module-imaging_strategies_fillFreehand.html +708 -0
  89. package/docs/documentation/module-imaging_tools.html +3617 -0
  90. package/docs/documentation/module-imaging_tools_custom_contourTool.html +207 -0
  91. package/docs/documentation/module-imaging_tools_custom_diameterTool.html +205 -0
  92. package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +205 -0
  93. package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +203 -0
  94. package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +684 -0
  95. package/docs/documentation/module-imaging_tools_default.html +205 -0
  96. package/docs/documentation/module-imaging_tools_interaction.html +530 -0
  97. package/docs/documentation/module-imaging_tools_io.html +832 -0
  98. package/docs/documentation/module-imaging_tools_main.html +2028 -0
  99. package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +567 -0
  100. package/docs/documentation/module-imaging_tools_segmentation.html +3586 -0
  101. package/docs/documentation/module-imaging_tools_state.html +494 -0
  102. package/docs/documentation/module-imaging_utils.html +7253 -0
  103. package/docs/documentation/module-loaders_commonLoader.html +1313 -0
  104. package/docs/documentation/module-loaders_dicomLoader.html +522 -0
  105. package/docs/documentation/module-loaders_fileLoader.html +593 -0
  106. package/docs/documentation/module-loaders_multiframeLoader.html +1169 -0
  107. package/docs/documentation/module-loaders_niftiLoader.html +565 -0
  108. package/docs/documentation/module-loaders_nrrdLoader.html +1459 -0
  109. package/docs/documentation/module-loaders_resliceLoader.html +590 -0
  110. package/docs/documentation/module-monitors_memory.html +980 -0
  111. package/docs/documentation/module-tools_default.html +740 -0
  112. package/docs/documentation/module.exports_module.exports.html +203 -0
  113. package/docs/documentation/monitors_memory.js.html +189 -0
  114. package/docs/documentation/parsers_nrrd.js.html +569 -0
  115. package/docs/documentation/scripts/collapse.js +20 -0
  116. package/docs/documentation/scripts/linenumber.js +25 -0
  117. package/docs/documentation/scripts/nav.js +12 -0
  118. package/docs/documentation/scripts/polyfill.js +4 -0
  119. package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +202 -0
  120. package/docs/documentation/scripts/prettify/lang-css.js +2 -0
  121. package/docs/documentation/scripts/prettify/prettify.js +28 -0
  122. package/docs/documentation/scripts/search.js +83 -0
  123. package/docs/documentation/styles/jsdoc.css +765 -0
  124. package/docs/documentation/styles/prettify.css +80 -0
  125. package/docs/documentation/tools_contourTool.js.html +1963 -0
  126. package/docs/documentation/tools_custom_contourTool.js.html +1968 -0
  127. package/docs/documentation/tools_custom_diameterTool.js.html +225 -0
  128. package/docs/documentation/tools_custom_editMaskTool.js.html +225 -0
  129. package/docs/documentation/tools_custom_polylineScissorsTool.js.html +143 -0
  130. package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +245 -0
  131. package/docs/documentation/tools_default.js.html +576 -0
  132. package/docs/documentation/tools_diameterTool.js.html +219 -0
  133. package/docs/documentation/tools_editMaskTool.js.html +219 -0
  134. package/docs/documentation/tools_interaction.js.html +258 -0
  135. package/docs/documentation/tools_io.js.html +297 -0
  136. package/docs/documentation/tools_main.js.html +443 -0
  137. package/docs/documentation/tools_polygonSegmentationMixin.js.html +329 -0
  138. package/docs/documentation/tools_polylineScissorsTool.js.html +136 -0
  139. package/docs/documentation/tools_seedTool.js.html +423 -0
  140. package/docs/documentation/tools_segmentation.js.html +558 -0
  141. package/docs/documentation/tools_state.js.html +163 -0
  142. package/docs/documentation/tools_strategies_eraseFreehand.js.html +160 -0
  143. package/docs/documentation/tools_strategies_fillFreehand.js.html +163 -0
  144. package/docs/documentation/tools_thresholdsBrushTool.js.html +239 -0
  145. package/docs/documentation/tools_tools.default.js.html +569 -0
  146. package/docs/documentation/tools_tools.interaction.js.html +251 -0
  147. package/docs/documentation/tools_tools.io.js.html +288 -0
  148. package/docs/documentation/tools_tools.main.js.html +442 -0
  149. package/docs/documentation/tools_tools.segmentation.js.html +445 -0
  150. package/docs/documentation/tools_tools.state.js.html +157 -0
  151. package/docs/examples/base.html +170 -0
  152. package/docs/examples/colorMaps.html +181 -0
  153. package/docs/examples/defaultTools.html +246 -0
  154. package/docs/examples/demo/anon1 +0 -0
  155. package/docs/examples/demo/anon10 +0 -0
  156. package/docs/examples/demo/anon11 +0 -0
  157. package/docs/examples/demo/anon12 +0 -0
  158. package/docs/examples/demo/anon13 +0 -0
  159. package/docs/examples/demo/anon14 +0 -0
  160. package/docs/examples/demo/anon15 +0 -0
  161. package/docs/examples/demo/anon16 +0 -0
  162. package/docs/examples/demo/anon17 +0 -0
  163. package/docs/examples/demo/anon18 +0 -0
  164. package/docs/examples/demo/anon19 +0 -0
  165. package/docs/examples/demo/anon2 +0 -0
  166. package/docs/examples/demo/anon20 +0 -0
  167. package/docs/examples/demo/anon21 +0 -0
  168. package/docs/examples/demo/anon22 +0 -0
  169. package/docs/examples/demo/anon23 +0 -0
  170. package/docs/examples/demo/anon24 +0 -0
  171. package/docs/examples/demo/anon3 +0 -0
  172. package/docs/examples/demo/anon4 +0 -0
  173. package/docs/examples/demo/anon5 +0 -0
  174. package/docs/examples/demo/anon6 +0 -0
  175. package/docs/examples/demo/anon7 +0 -0
  176. package/docs/examples/demo/anon8 +0 -0
  177. package/docs/examples/demo/anon9 +0 -0
  178. package/docs/examples/demo/example.nrrd +0 -0
  179. package/docs/examples/demo/segmentation.nrrd +0 -0
  180. package/docs/examples/demo/xa_integris.dcm +0 -0
  181. package/docs/examples/index.html +129 -0
  182. package/docs/examples/larvitar.js +108623 -0
  183. package/docs/examples/layers.html +250 -0
  184. package/docs/examples/masks.html +273 -0
  185. package/docs/examples/multiframe.html +200 -0
  186. package/docs/examples/nrrd.html +96 -0
  187. package/docs/examples/reslice.html +174 -0
  188. package/docs/index.html +92 -0
  189. package/imaging/dataDictionary.json +21865 -21865
  190. package/imaging/imageAnonymization.js +161 -0
  191. package/imaging/{image_colormaps.js → imageColormaps.js} +2 -2
  192. package/imaging/{image_contours.js → imageContours.js} +1 -2
  193. package/imaging/{image_io.js → imageIo.js} +18 -15
  194. package/imaging/{image_layers.js → imageLayers.js} +2 -2
  195. package/imaging/{image_loading.js → imageLoading.js} +9 -6
  196. package/imaging/imageParsing.js +301 -0
  197. package/imaging/{image_presets.js → imagePresets.js} +2 -2
  198. package/imaging/{image_rendering.js → imageRendering.js} +36 -32
  199. package/imaging/imageReslice.js +78 -0
  200. package/imaging/{image_store.js → imageStore.js} +8 -7
  201. package/imaging/{image_tools.js → imageTools.js} +15 -23
  202. package/imaging/{image_utils.js → imageUtils.js} +1 -1
  203. package/imaging/loaders/commonLoader.js +1 -1
  204. package/imaging/loaders/dicomLoader.js +1 -1
  205. package/imaging/loaders/fileLoader.js +2 -2
  206. package/imaging/loaders/multiframeLoader.js +6 -2
  207. package/imaging/loaders/nrrdLoader.js +11 -7
  208. package/imaging/tools/{contourTool.js → custom/contourTool.js} +25 -20
  209. package/imaging/tools/{diameterTool.js → custom/diameterTool.js} +9 -3
  210. package/imaging/tools/{editMaskTool.js → custom/editMaskTool.js} +7 -1
  211. package/imaging/tools/{polylineScissorsTool.js → custom/polylineScissorsTool.js} +12 -5
  212. package/imaging/tools/{seedTool.js → custom/seedTool.js} +3 -3
  213. package/imaging/tools/{thresholdsBrushTool.js → custom/thresholdsBrushTool.js} +7 -1
  214. package/imaging/tools/{tools.default.js → default.js} +10 -3
  215. package/imaging/tools/{tools.interaction.js → interaction.js} +13 -6
  216. package/imaging/tools/{tools.io.js → io.js} +15 -6
  217. package/imaging/tools/{tools.main.js → main.js} +16 -14
  218. package/imaging/tools/polygonSegmentationMixin.js +8 -4
  219. package/imaging/tools/{tools.segmentation.js → segmentation.js} +171 -58
  220. package/imaging/tools/segmentations.md +38 -0
  221. package/imaging/tools/setLabelMap3D.js +248 -0
  222. package/imaging/tools/{tools.state.js → state.js} +7 -1
  223. package/imaging/tools/strategies/eraseFreehand.js +8 -9
  224. package/imaging/tools/strategies/fillFreehand.js +8 -9
  225. package/index.js +44 -39
  226. package/modules/vuex/larvitar.js +13 -3
  227. package/package.json +13 -10
  228. package/imaging/image_parsing.js +0 -307
  229. package/imaging/image_reslice.js +0 -80

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