larvitar 0.18.2 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (229) hide show
  1. package/.github/workflows/deploy.yml +3 -12
  2. package/MIGRATION.md +25 -0
  3. package/README.md +28 -27
  4. package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +171 -0
  5. package/docs/documentation/Tools.Annotation.ContoursTool.html +218 -0
  6. package/docs/documentation/Tools.Annotation.DiameterTool.html +219 -0
  7. package/docs/documentation/Tools.Annotation.SeedsTool.html +214 -0
  8. package/docs/documentation/Tools.Brush.BrushTool.html +218 -0
  9. package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +218 -0
  10. package/docs/documentation/Tools.PolylineScissorsTool.html +218 -0
  11. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
  12. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
  13. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
  14. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
  15. package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
  16. package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
  17. package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
  18. package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
  19. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
  20. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +978 -0
  21. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
  22. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
  23. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
  24. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
  25. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +1049 -0
  26. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
  27. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
  28. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
  29. package/docs/documentation/global.html +1303 -0
  30. package/docs/documentation/imageAnonymization.js.html +245 -0
  31. package/docs/documentation/imageColormaps.js.html +283 -0
  32. package/docs/documentation/imageContours.js.html +278 -0
  33. package/docs/documentation/imageIo.js.html +291 -0
  34. package/docs/documentation/imageLayers.js.html +188 -0
  35. package/docs/documentation/imageLoading.js.html +297 -0
  36. package/docs/documentation/imageParsing.js.html +385 -0
  37. package/docs/documentation/imagePresets.js.html +207 -0
  38. package/docs/documentation/imageRendering.js.html +849 -0
  39. package/docs/documentation/imageReslice.js.html +162 -0
  40. package/docs/documentation/imageStore.js.html +360 -0
  41. package/docs/documentation/imageTools.js.html +784 -0
  42. package/docs/documentation/imageUtils.js.html +1609 -0
  43. package/docs/documentation/image_colormaps.js.html +283 -0
  44. package/docs/documentation/image_contours.js.html +279 -0
  45. package/docs/documentation/image_io.js.html +288 -0
  46. package/docs/documentation/image_layers.js.html +188 -0
  47. package/docs/documentation/image_loading.js.html +294 -0
  48. package/docs/documentation/image_parsing.js.html +391 -0
  49. package/docs/documentation/image_presets.js.html +207 -0
  50. package/docs/documentation/image_rendering.js.html +845 -0
  51. package/docs/documentation/image_reslice.js.html +164 -0
  52. package/docs/documentation/image_store.js.html +359 -0
  53. package/docs/documentation/image_tools.js.html +792 -0
  54. package/docs/documentation/image_utils.js.html +1609 -0
  55. package/docs/documentation/index.html +175 -0
  56. package/docs/documentation/loaders_commonLoader.js.html +306 -0
  57. package/docs/documentation/loaders_dicomLoader.js.html +130 -0
  58. package/docs/documentation/loaders_fileLoader.js.html +155 -0
  59. package/docs/documentation/loaders_multiframeLoader.js.html +443 -0
  60. package/docs/documentation/loaders_niftiLoader.js.html +150 -0
  61. package/docs/documentation/loaders_nrrdLoader.js.html +545 -0
  62. package/docs/documentation/loaders_resliceLoader.js.html +258 -0
  63. package/docs/documentation/module-imaging_contours.html +954 -0
  64. package/docs/documentation/module-imaging_imageAnonymization.html +544 -0
  65. package/docs/documentation/module-imaging_imageColormaps.html +1012 -0
  66. package/docs/documentation/module-imaging_imageContours.html +954 -0
  67. package/docs/documentation/module-imaging_imageIo.html +1057 -0
  68. package/docs/documentation/module-imaging_imageLayers.html +904 -0
  69. package/docs/documentation/module-imaging_imageLoading.html +1301 -0
  70. package/docs/documentation/module-imaging_imageParsing.html +1356 -0
  71. package/docs/documentation/module-imaging_imagePresets.html +679 -0
  72. package/docs/documentation/module-imaging_imageRendering.html +3223 -0
  73. package/docs/documentation/module-imaging_imageReslice.html +413 -0
  74. package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +284 -0
  75. package/docs/documentation/module-imaging_imageStore.html +1560 -0
  76. package/docs/documentation/module-imaging_imageTools.html +3617 -0
  77. package/docs/documentation/module-imaging_imageUtils.html +7253 -0
  78. package/docs/documentation/module-imaging_io.html +1057 -0
  79. package/docs/documentation/module-imaging_layers.html +904 -0
  80. package/docs/documentation/module-imaging_loading.html +1301 -0
  81. package/docs/documentation/module-imaging_parsing.html +1375 -0
  82. package/docs/documentation/module-imaging_presets.html +679 -0
  83. package/docs/documentation/module-imaging_rendering.html +8094 -0
  84. package/docs/documentation/module-imaging_reslice.html +411 -0
  85. package/docs/documentation/module-imaging_store-Larvitar_Store.html +284 -0
  86. package/docs/documentation/module-imaging_store.html +1537 -0
  87. package/docs/documentation/module-imaging_strategies_eraseFreehand.html +708 -0
  88. package/docs/documentation/module-imaging_strategies_fillFreehand.html +708 -0
  89. package/docs/documentation/module-imaging_tools.html +3617 -0
  90. package/docs/documentation/module-imaging_tools_custom_contourTool.html +207 -0
  91. package/docs/documentation/module-imaging_tools_custom_diameterTool.html +205 -0
  92. package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +205 -0
  93. package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +203 -0
  94. package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +684 -0
  95. package/docs/documentation/module-imaging_tools_default.html +205 -0
  96. package/docs/documentation/module-imaging_tools_interaction.html +530 -0
  97. package/docs/documentation/module-imaging_tools_io.html +832 -0
  98. package/docs/documentation/module-imaging_tools_main.html +2028 -0
  99. package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +567 -0
  100. package/docs/documentation/module-imaging_tools_segmentation.html +3586 -0
  101. package/docs/documentation/module-imaging_tools_state.html +494 -0
  102. package/docs/documentation/module-imaging_utils.html +7253 -0
  103. package/docs/documentation/module-loaders_commonLoader.html +1313 -0
  104. package/docs/documentation/module-loaders_dicomLoader.html +522 -0
  105. package/docs/documentation/module-loaders_fileLoader.html +593 -0
  106. package/docs/documentation/module-loaders_multiframeLoader.html +1169 -0
  107. package/docs/documentation/module-loaders_niftiLoader.html +565 -0
  108. package/docs/documentation/module-loaders_nrrdLoader.html +1459 -0
  109. package/docs/documentation/module-loaders_resliceLoader.html +590 -0
  110. package/docs/documentation/module-monitors_memory.html +980 -0
  111. package/docs/documentation/module-tools_default.html +740 -0
  112. package/docs/documentation/module.exports_module.exports.html +203 -0
  113. package/docs/documentation/monitors_memory.js.html +189 -0
  114. package/docs/documentation/parsers_nrrd.js.html +569 -0
  115. package/docs/documentation/scripts/collapse.js +20 -0
  116. package/docs/documentation/scripts/linenumber.js +25 -0
  117. package/docs/documentation/scripts/nav.js +12 -0
  118. package/docs/documentation/scripts/polyfill.js +4 -0
  119. package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +202 -0
  120. package/docs/documentation/scripts/prettify/lang-css.js +2 -0
  121. package/docs/documentation/scripts/prettify/prettify.js +28 -0
  122. package/docs/documentation/scripts/search.js +83 -0
  123. package/docs/documentation/styles/jsdoc.css +765 -0
  124. package/docs/documentation/styles/prettify.css +80 -0
  125. package/docs/documentation/tools_contourTool.js.html +1963 -0
  126. package/docs/documentation/tools_custom_contourTool.js.html +1968 -0
  127. package/docs/documentation/tools_custom_diameterTool.js.html +225 -0
  128. package/docs/documentation/tools_custom_editMaskTool.js.html +225 -0
  129. package/docs/documentation/tools_custom_polylineScissorsTool.js.html +143 -0
  130. package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +245 -0
  131. package/docs/documentation/tools_default.js.html +576 -0
  132. package/docs/documentation/tools_diameterTool.js.html +219 -0
  133. package/docs/documentation/tools_editMaskTool.js.html +219 -0
  134. package/docs/documentation/tools_interaction.js.html +258 -0
  135. package/docs/documentation/tools_io.js.html +297 -0
  136. package/docs/documentation/tools_main.js.html +443 -0
  137. package/docs/documentation/tools_polygonSegmentationMixin.js.html +329 -0
  138. package/docs/documentation/tools_polylineScissorsTool.js.html +136 -0
  139. package/docs/documentation/tools_seedTool.js.html +423 -0
  140. package/docs/documentation/tools_segmentation.js.html +558 -0
  141. package/docs/documentation/tools_state.js.html +163 -0
  142. package/docs/documentation/tools_strategies_eraseFreehand.js.html +160 -0
  143. package/docs/documentation/tools_strategies_fillFreehand.js.html +163 -0
  144. package/docs/documentation/tools_thresholdsBrushTool.js.html +239 -0
  145. package/docs/documentation/tools_tools.default.js.html +569 -0
  146. package/docs/documentation/tools_tools.interaction.js.html +251 -0
  147. package/docs/documentation/tools_tools.io.js.html +288 -0
  148. package/docs/documentation/tools_tools.main.js.html +442 -0
  149. package/docs/documentation/tools_tools.segmentation.js.html +445 -0
  150. package/docs/documentation/tools_tools.state.js.html +157 -0
  151. package/docs/examples/base.html +170 -0
  152. package/docs/examples/colorMaps.html +181 -0
  153. package/docs/examples/defaultTools.html +246 -0
  154. package/docs/examples/demo/anon1 +0 -0
  155. package/docs/examples/demo/anon10 +0 -0
  156. package/docs/examples/demo/anon11 +0 -0
  157. package/docs/examples/demo/anon12 +0 -0
  158. package/docs/examples/demo/anon13 +0 -0
  159. package/docs/examples/demo/anon14 +0 -0
  160. package/docs/examples/demo/anon15 +0 -0
  161. package/docs/examples/demo/anon16 +0 -0
  162. package/docs/examples/demo/anon17 +0 -0
  163. package/docs/examples/demo/anon18 +0 -0
  164. package/docs/examples/demo/anon19 +0 -0
  165. package/docs/examples/demo/anon2 +0 -0
  166. package/docs/examples/demo/anon20 +0 -0
  167. package/docs/examples/demo/anon21 +0 -0
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  172. package/docs/examples/demo/anon4 +0 -0
  173. package/docs/examples/demo/anon5 +0 -0
  174. package/docs/examples/demo/anon6 +0 -0
  175. package/docs/examples/demo/anon7 +0 -0
  176. package/docs/examples/demo/anon8 +0 -0
  177. package/docs/examples/demo/anon9 +0 -0
  178. package/docs/examples/demo/example.nrrd +0 -0
  179. package/docs/examples/demo/segmentation.nrrd +0 -0
  180. package/docs/examples/demo/xa_integris.dcm +0 -0
  181. package/docs/examples/index.html +129 -0
  182. package/docs/examples/larvitar.js +108623 -0
  183. package/docs/examples/layers.html +250 -0
  184. package/docs/examples/masks.html +273 -0
  185. package/docs/examples/multiframe.html +200 -0
  186. package/docs/examples/nrrd.html +96 -0
  187. package/docs/examples/reslice.html +174 -0
  188. package/docs/index.html +92 -0
  189. package/imaging/dataDictionary.json +21865 -21865
  190. package/imaging/imageAnonymization.js +161 -0
  191. package/imaging/{image_colormaps.js → imageColormaps.js} +2 -2
  192. package/imaging/{image_contours.js → imageContours.js} +1 -2
  193. package/imaging/{image_io.js → imageIo.js} +18 -15
  194. package/imaging/{image_layers.js → imageLayers.js} +2 -2
  195. package/imaging/{image_loading.js → imageLoading.js} +9 -6
  196. package/imaging/imageParsing.js +301 -0
  197. package/imaging/{image_presets.js → imagePresets.js} +2 -2
  198. package/imaging/{image_rendering.js → imageRendering.js} +36 -32
  199. package/imaging/imageReslice.js +78 -0
  200. package/imaging/{image_store.js → imageStore.js} +8 -7
  201. package/imaging/{image_tools.js → imageTools.js} +15 -23
  202. package/imaging/{image_utils.js → imageUtils.js} +1 -1
  203. package/imaging/loaders/commonLoader.js +1 -1
  204. package/imaging/loaders/dicomLoader.js +1 -1
  205. package/imaging/loaders/fileLoader.js +2 -2
  206. package/imaging/loaders/multiframeLoader.js +6 -2
  207. package/imaging/loaders/nrrdLoader.js +11 -7
  208. package/imaging/tools/{contourTool.js → custom/contourTool.js} +25 -20
  209. package/imaging/tools/{diameterTool.js → custom/diameterTool.js} +9 -3
  210. package/imaging/tools/{editMaskTool.js → custom/editMaskTool.js} +7 -1
  211. package/imaging/tools/{polylineScissorsTool.js → custom/polylineScissorsTool.js} +12 -5
  212. package/imaging/tools/{seedTool.js → custom/seedTool.js} +3 -3
  213. package/imaging/tools/{thresholdsBrushTool.js → custom/thresholdsBrushTool.js} +7 -1
  214. package/imaging/tools/{tools.default.js → default.js} +10 -3
  215. package/imaging/tools/{tools.interaction.js → interaction.js} +13 -6
  216. package/imaging/tools/{tools.io.js → io.js} +15 -6
  217. package/imaging/tools/{tools.main.js → main.js} +16 -14
  218. package/imaging/tools/polygonSegmentationMixin.js +8 -4
  219. package/imaging/tools/{tools.segmentation.js → segmentation.js} +171 -58
  220. package/imaging/tools/segmentations.md +38 -0
  221. package/imaging/tools/setLabelMap3D.js +248 -0
  222. package/imaging/tools/{tools.state.js → state.js} +7 -1
  223. package/imaging/tools/strategies/eraseFreehand.js +8 -9
  224. package/imaging/tools/strategies/fillFreehand.js +8 -9
  225. package/index.js +44 -39
  226. package/modules/vuex/larvitar.js +13 -3
  227. package/package.json +13 -10
  228. package/imaging/image_parsing.js +0 -307
  229. package/imaging/image_reslice.js +0 -80
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+ <h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module.exports_module.exports.html">module.exports#module.exports</a></li><li><a href="module-imaging_store-Larvitar_Store.html">imaging/store~Larvitar_Store</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_anonymization.html">imaging/anonymization</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#anonymize#~anonymize">anonymize</a></li><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#encrypt#~encrypt">encrypt</a></li></ul></li><li><a href="module-imaging_contours.html">imaging/contours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#extractSlicePoints#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#populateContoursObject#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#parseContours#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_io.html">imaging/io</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildData#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildDataAsync#~buildDataAsync">buildDataAsync</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildHeader#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#getCachedPixelData#~getCachedPixelData">getCachedPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#importNRRDImage#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_layers.html">imaging/layers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#getActiveLayer#getActiveLayer">getActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#setActiveLayer#setActiveLayer">setActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#updateLayer#updateLayer">updateLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#buildLayers#~buildLayers">buildLayers</a></li></ul></li><li><a href="module-imaging_loading.html">imaging/loading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeFileImageLoader#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeImageLoader#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeWebImageLoader#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerMultiFrameImageLoader#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerNRRDImageLoader#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerResliceLoader#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#updateLoadedStack#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#isNewInstance#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_parsing.html">imaging/parsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#clearImageParsing#clearImageParsing">clearImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpDataSet#dumpDataSet">dumpDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFile#readFile">readFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFiles#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFile#~dumpFile">dumpFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFiles#~dumpFiles">dumpFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#parseNextFile#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_presets.html">imaging/presets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#getImagePresets#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImageCustomPreset#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImagePreset#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_rendering.html">imaging/rendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#HSVToRGB#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#addColorMap#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#applyColorMap#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#clearImageCache#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#disableViewport#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#fillPixelData#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageHorizontal#flipImageHorizontal">flipImageHorizontal</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageVertical#flipImageVertical">flipImageVertical</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getColormapsList#getColormapsList">getColormapsList</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getSeriesData#getSeriesData">getSeriesData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#invertImage#invertImage">invertImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#loadAndCacheImages#loadAndCacheImages">loadAndCacheImages</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderImage#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resetViewports#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resizeViewport#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageLeft#rotateImageLeft">rotateImageLeft</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageRight#rotateImageRight">rotateImageRight</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#storeViewportData#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#unloadViewport#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateImage#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateViewportData#updateViewportData">updateViewportData</a></li></ul></li><li></li><li><a href="module-imaging_reslice.html">imaging/reslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_reslice.html#resliceSeries#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_store.html">imaging/store</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_store.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_store.html#initLarvitarStore#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addSeriesIds#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addViewport#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#deleteViewport#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#disableVuex#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#enableVuex#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#get#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#removeSeriesIds#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#set#~set">set</a></li></ul></li><li><a href="module-imaging_tools.html">imaging/tools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addContoursTool#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDiameterTool#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addMaskEditingTool#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addSeedsTool#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addStackStateToElement#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addToolStateSingleSlice#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearCornerstoneElements#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearMeasurements#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearToolStateByName#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getCurrentMaskData#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getToolState#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setSegmentationConfig#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#syncToolStack#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateDiameterTool#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateStackToolState#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_utils.html">imaging/utils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDate#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDateTime#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getCmprMetadata#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTag#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTagCode#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDistanceBetweenSlices#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMaxPixelValue#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMeanValue#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMinPixelValue#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getNormalOrientation#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelRepresentation#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelTypedArray#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIOP#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIPP#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedMetadata#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedPixeldata#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedSliceLocation#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedStack#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedUIDs#getSortedUIDs">getSortedUIDs</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTagValue#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArray#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArrayFromDataType#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isElement#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isNegativeSign#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isStringVr#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isValidDate#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseAgeTag#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTag#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTimeTag#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDICOMFileIDTag#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parsePatientNameTag#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTag#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTimeTag#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteSignedArrays#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteValues#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#rand#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#randomId#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#sortStackCallback#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#spacingArray#spacingArray">spacingArray</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageTracker#getLarvitarImageTracker">getLarvitarImageTracker</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesDataFromLarvitarManager#getSeriesDataFromLarvitarManager">getSeriesDataFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#populateLarvitarManager#populateLarvitarManager">populateLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#removeSeriesFromLarvitarManager#removeSeriesFromLarvitarManager">removeSeriesFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#resetLarvitarManager#resetLarvitarManager">resetLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#updateLarvitarManager#updateLarvitarManager">updateLarvitarManager</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId#getDicomImageId">getDicomImageId</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage#loadNrrdImage">loadNrrdImage</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-monitors_memory.html">monitors/memory</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemoryAllocation#checkMemoryAllocation">checkMemoryAllocation</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemorySupport#checkMemorySupport">checkMemorySupport</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getAvailableMemory#getAvailableMemory">getAvailableMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getMB#getMB">getMB</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getUsedMemory#getUsedMemory">getUsedMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#setAvailableMemory#setAvailableMemory">setAvailableMemory</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#getDefaultToolsByType#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#setDefaultToolsProps#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="ContoursTool.html#event:_drawingDoubleTapClickCallback">ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDoubleClickCallback">ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDownCallback">ContoursTool#_drawingMouseDownCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDragCallback">ContoursTool#_drawingMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseMoveCallback">ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseUpCallback">ContoursTool#_drawingMouseUpCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchDragCallback">ContoursTool#_drawingTouchDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchStartCallback">ContoursTool#_drawingTouchStartCallback</a></li><li><a href="ContoursTool.html#event:_editMouseDragCallback">ContoursTool#_editMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_editTouchDragCallback">ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#_checkIfDrawing">_checkIfDrawing</a></li><li><a href="global.html#_paint">_paint</a></li><li><a href="global.html#addDefaultTools">addDefaultTools</a></li><li><a href="global.html#addMouseKeyHandlers">addMouseKeyHandlers</a></li><li><a href="global.html#addSegmentationMask">addSegmentationMask</a></li><li><a href="global.html#addTool">addTool</a></li><li><a href="global.html#buildMultiFrameImage">buildMultiFrameImage</a></li><li><a href="global.html">clearMultiFrameCache</a></li><li><a href="global.html#clearSegmentationState">clearSegmentationState</a></li><li><a href="global.html#config">config</a></li><li><a href="global.html">createCustomImage</a></li><li><a href="global.html#csToolsCreateStack">csToolsCreateStack</a></li><li><a href="global.html#csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li><a href="global.html#deleteMask">deleteMask</a></li><li><a href="global.html#disableBrushTool">disableBrushTool</a></li><li><a href="global.html#download">download</a></li><li><a href="global.html#enableBrushTool">enableBrushTool</a></li><li><a href="global.html#eraseFreehand">eraseFreehand</a></li><li><a href="global.html#eraseInsideFreehand">eraseInsideFreehand</a></li><li><a href="global.html#eraseOutsideFreehand">eraseOutsideFreehand</a></li><li><a href="global.html#exportAnnotations">exportAnnotations</a></li><li><a href="global.html#extractToolInfo">extractToolInfo</a></li><li><a href="global.html#fillFreehand">fillFreehand</a></li><li><a href="global.html#fillInsideFreehand">fillInsideFreehand</a></li><li><a href="global.html#fillOutsideFreehand">fillOutsideFreehand</a></li><li><a href="global.html#forceRender">forceRender</a></li><li><a href="global.html#generateCSV">generateCSV</a></li><li><a href="global.html#generateLUT">generateLUT</a></li><li><a href="global.html#generateUniformLUT">generateUniformLUT</a></li><li><a href="global.html#getActiveLabelmapBuffer">getActiveLabelmapBuffer</a></li><li><a href="global.html#getCircleWithThreshold">getCircleWithThreshold</a></li><li><a href="global.html">getMultiFrameImageId</a></li><li><a href="global.html#HSVtoRGB">HSVtoRGB</a></li><li><a href="global.html#initializeCSTools">initializeCSTools</a></li><li><a href="global.html#initSegmentationModule">initSegmentationModule</a></li><li><a href="global.html#isDrawing">isDrawing</a></li><li><a href="global.html#isToolMissing">isToolMissing</a></li><li><a href="global.html#loadAnnotations">loadAnnotations</a></li><li><a href="global.html#loadMultiFrameImage">loadMultiFrameImage</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#redoLastStroke">redoLastStroke</a></li><li><a href="global.html#renderToolData">renderToolData</a></li><li><a href="global.html#restoreToolState">restoreToolState</a></li><li><a href="global.html#saveAnnotations">saveAnnotations</a></li><li><a href="global.html#saveToolState">saveToolState</a></li><li><a href="global.html#setActiveLabelmap">setActiveLabelmap</a></li><li><a href="global.html#setActiveLabelOpacity">setActiveLabelOpacity</a></li><li><a href="global.html#setActiveSegment">setActiveSegment</a></li><li><a href="global.html#setBrushProps">setBrushProps</a></li><li><a href="global.html#setInactiveLabelOpacity">setInactiveLabelOpacity</a></li><li><a href="global.html#setMaskProps">setMaskProps</a></li><li><a href="global.html">setPixelDataType</a></li><li><a href="global.html#setToolActive">setToolActive</a></li><li><a href="global.html#setToolDisabled">setToolDisabled</a></li><li><a href="global.html#setToolEnabled">setToolEnabled</a></li><li><a href="global.html#setToolPassive">setToolPassive</a></li><li><a href="global.html#setToolsStyle">setToolsStyle</a></li><li><a href="global.html#toggleContourMode">toggleContourMode</a></li><li><a href="global.html">toggleMouseHandlers</a></li><li><a href="global.html#tryUpdateImage">tryUpdateImage</a></li><li><a href="global.html#undoLastStroke">undoLastStroke</a></li></ul>
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+
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+ </nav>
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+
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+ <div id="main">
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+
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+ <h1 class="page-title">image_loading.js</h1>
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+
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+
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+
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+
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+
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+
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+
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+ <section>
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+ <article>
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+ <pre class="prettyprint source linenums"><code>/** @module imaging/loading
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+ * @desc This file provides functionalities for
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+ * initialize, configure and update WadoImageLoader
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+ */
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+
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+ // external libraries
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+ import cornerstone from "cornerstone-core";
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+ import dicomParser from "dicom-parser";
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+ import cornerstoneWADOImageLoader from "cornerstone-wado-image-loader";
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+ import cornerstoneWebImageLoader from "cornerstone-web-image-loader";
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+ import cornerstoneFileImageLoader from "cornerstone-file-image-loader";
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+ import { forEach } from "lodash";
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+
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+ // internal libraries
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+ import { larvitar_store } from "./image_store";
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+ import { getSortedStack, getSortedUIDs } from "./image_utils";
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+ import { loadNrrdImage } from "./loaders/nrrdLoader";
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+ import { loadReslicedImage } from "./loaders/resliceLoader";
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+ import { loadMultiFrameImage } from "./loaders/multiframeLoader";
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+
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+ /**
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+ * Global standard configuration
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+ * @inner
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+ * @var {Object} globalConfig
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+ * @property {Number} maxWebWorkers - number of maximum web workers
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+ * @property {String} webWorkerPath - path to default WADO web worker
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+ * @property {} - see https://github.com/cornerstonejs/cornerstoneWADOImageLoader/blob/master/docs/WebWorkers.md
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+ */
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+ const globalConfig = {
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+ maxWebWorkers: navigator.hardwareConcurrency || 1,
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+ webWorkerPath: "/cornerstoneWADOImageLoaderWebWorker.js",
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+ startWebWorkersOnDemand: true,
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+ taskConfiguration: {
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+ decodeTask: {
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+ loadCodecsOnStartup: true,
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+ initializeCodecsOnStartup: false,
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+ codecsPath: "/cornerstoneWADOImageLoaderCodecs.js",
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+ usePDFJS: false
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+ }
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+ }
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+ };
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+
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+ /*
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+ * This module provides the following functions to be exported:
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+ * initializeImageLoader(config)
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+ * initializeWebImageLoader()
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+ * initializeFileImageLoader()
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+ * registerNRRDImageLoader()
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+ * registerResliceLoader()
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+ * updateLoadedStack(seriesData, allSeriesStack)
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+ */
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+
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+ /**
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+ * Configure cornerstoneWADOImageLoader
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+ * @instance
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+ * @function initializeImageLoader
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+ * @param {Object} config - Custom config @default globalConfig
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+ */
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+ export const initializeImageLoader = function (config) {
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+ let imageLoaderConfig = config ? config : globalConfig;
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+ cornerstoneWADOImageLoader.webWorkerManager.initialize(imageLoaderConfig);
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+ cornerstoneWADOImageLoader.external.cornerstone = cornerstone;
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+ cornerstoneWADOImageLoader.external.dicomParser = dicomParser;
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+ };
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+
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+ /**
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+ * Configure cornerstoneWebImageLoader
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+ * @instance
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+ * @function initializeWebImageLoader
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+ */
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+ export const initializeWebImageLoader = function () {
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+ cornerstoneWebImageLoader.external.cornerstone = cornerstone;
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+ cornerstoneWebImageLoader.configure({
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+ beforeSend: function () {
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+ // add xhr as function arg
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+ // Add custom headers here (e.g. auth tokens)
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+ // xhr.setRequestHeader('x-auth-token', 'my auth token');
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+ }
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+ });
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+ };
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+
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+ /**
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+ * Configure cornerstoneFileImageLoader
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+ * @instance
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+ * @function initializeFileImageLoader
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+ */
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+ export const initializeFileImageLoader = function () {
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+ cornerstoneFileImageLoader.external.cornerstone = cornerstone;
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+ };
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+
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+ /**
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+ * Register custom NRRD ImageLoader
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+ * @instance
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+ * @function registerNRRDImageLoader
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+ */
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+ export const registerNRRDImageLoader = function () {
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+ cornerstone.registerImageLoader("nrrdLoader", loadNrrdImage);
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+ };
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+
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+ /**
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+ * Register custom Reslice ImageLoader
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+ * @instance
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+ * @function registerResliceLoader
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+ */
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+ export const registerResliceLoader = function () {
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+ cornerstone.registerImageLoader("resliceLoader", loadReslicedImage);
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+ };
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+
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+ /**
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+ * Register custom MultiFrame ImageLoader
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+ * @instance
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+ * @function registerMultiFrameImageLoader
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+ */
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+ export const registerMultiFrameImageLoader = function () {
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+ cornerstone.registerImageLoader("multiFrameLoader", loadMultiFrameImage);
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+ };
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+
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+ /**
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+ * Update the allSeriesStack object using wadoImageLoader fileManager
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+ * @instance
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+ * @function updateLoadedStack
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+ * @param {Object} seriesData - Cornerstone series object
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+ * @param {Object} allSeriesStack - Dict containing all series objects
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+ * @param {String} customId - Optional custom id to overwrite seriesUID as default one
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+ */
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+ export const updateLoadedStack = function (
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+ seriesData,
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+ allSeriesStack,
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+ customId
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+ ) {
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+ let sid = seriesData.metadata.seriesUID;
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+ let ssid = seriesData.metadata.studyUID;
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+ let iid = seriesData.metadata.instanceUID;
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+ let seriesDescription = seriesData.metadata.seriesDescription;
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+ let numberOfFrames = seriesData.metadata["x00280008"];
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+ let modality = seriesData.metadata["x00080060"];
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+ let isMultiframe = numberOfFrames > 1 ? true : false;
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+ let color = cornerstoneWADOImageLoader.isColorImage(
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+ seriesData.metadata["x00280004"]
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+ );
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+ let id = customId || sid;
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+ // initialize series stack
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+ if (!allSeriesStack[id]) {
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+ allSeriesStack[id] = {
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+ currentImageIdIndex: 0,
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+ imageIds: [], // (ordered)
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+ instanceUIDs: {}, // instanceUID: imageId (ordered)
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+ instances: {},
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+ seriesDescription: seriesDescription,
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+ larvitarSeriesInstanceUID: sid,
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+ seriesUID: sid,
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+ studyUID: ssid,
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+ numberOfImages: 0,
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+ numberOfFrames: numberOfFrames,
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+ isMultiframe: isMultiframe,
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+ modality: modality,
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+ color: color,
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+ bytes: 0
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+ };
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+ }
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+
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+ // if the parsed file is a new series instance, keep it
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+ if (isNewInstance(allSeriesStack[id].instances, iid)) {
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+ // generate an imageId for the file and store it
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+ // in allSeriesStack imageIds array, used by
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+ // cornerstoneWADOImageLoader to display the stack of images
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+ let imageId = cornerstoneWADOImageLoader.wadouri.fileManager.add(
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+ seriesData.file
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+ );
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+
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+ allSeriesStack[id].imageIds.push(imageId);
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+ allSeriesStack[id].numberOfImages += 1;
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+ allSeriesStack[id].bytes += seriesData.file.size;
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+ // store needed instance tags
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+ allSeriesStack[id].instances[imageId] = {
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+ metadata: seriesData.metadata,
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+ file: seriesData.file,
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+ dataSet: seriesData.dataSet
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+ };
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+ // order images in stack
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+ allSeriesStack[id].imageIds = getSortedStack(
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+ allSeriesStack[id],
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+ ["imagePosition"],
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+ true
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+ );
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+ // populate the ordered dictionary of instanceUIDs
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+ allSeriesStack[id].instanceUIDs = getSortedUIDs(allSeriesStack[id]);
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+ larvitar_store.addSeriesIds(id, allSeriesStack[id].imageIds);
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+ }
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+ };
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+
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+ /* Internal module functions */
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+
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+ /**
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+ * Check if the instance is new or not
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+ * @inner
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+ * @function isNewInstance
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+ * @param {Object} instances - instances already loaded
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+ * @param {String} iid - instance uid to check
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+ * @return {Bool} True if is new instance, false if already present
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+ */
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+ let isNewInstance = function (instances, iid) {
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+ let isNewInstance = true;
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+ forEach(instances, function (instance) {
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+ if (instance.metadata.instanceUID === iid) {
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+ isNewInstance = false;
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+ }
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+ });
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+ return isNewInstance;
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+ };
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+ </code></pre>
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+ </article>
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+ </section>
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+
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+
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+
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+
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+
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+
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+ </div>
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+
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+ <br class="clear">
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+
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+ <footer>
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+ Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 3.6.7</a> using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
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+ </footer>
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+
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+ <script>prettyPrint();</script>
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+ <script src="scripts/polyfill.js"></script>
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+ <script src="scripts/linenumber.js"></script>
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+ <script src="scripts/search.js" defer></script>
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+ </html>