npm - larvitar - Versions diffs - 0.18.2 → 1.2.0 - Mend

larvitar 0.18.2 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (229) hide show

package/.github/workflows/deploy.yml +3 -12
package/MIGRATION.md +25 -0
package/README.md +28 -27
package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +171 -0
package/docs/documentation/Tools.Annotation.ContoursTool.html +218 -0
package/docs/documentation/Tools.Annotation.DiameterTool.html +219 -0
package/docs/documentation/Tools.Annotation.SeedsTool.html +214 -0
package/docs/documentation/Tools.Brush.BrushTool.html +218 -0
package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +218 -0
package/docs/documentation/Tools.PolylineScissorsTool.html +218 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +978 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +1049 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
package/docs/documentation/global.html +1303 -0
package/docs/documentation/imageAnonymization.js.html +245 -0
package/docs/documentation/imageColormaps.js.html +283 -0
package/docs/documentation/imageContours.js.html +278 -0
package/docs/documentation/imageIo.js.html +291 -0
package/docs/documentation/imageLayers.js.html +188 -0
package/docs/documentation/imageLoading.js.html +297 -0
package/docs/documentation/imageParsing.js.html +385 -0
package/docs/documentation/imagePresets.js.html +207 -0
package/docs/documentation/imageRendering.js.html +849 -0
package/docs/documentation/imageReslice.js.html +162 -0
package/docs/documentation/imageStore.js.html +360 -0
package/docs/documentation/imageTools.js.html +784 -0
package/docs/documentation/imageUtils.js.html +1609 -0
package/docs/documentation/image_colormaps.js.html +283 -0
package/docs/documentation/image_contours.js.html +279 -0
package/docs/documentation/image_io.js.html +288 -0
package/docs/documentation/image_layers.js.html +188 -0
package/docs/documentation/image_loading.js.html +294 -0
package/docs/documentation/image_parsing.js.html +391 -0
package/docs/documentation/image_presets.js.html +207 -0
package/docs/documentation/image_rendering.js.html +845 -0
package/docs/documentation/image_reslice.js.html +164 -0
package/docs/documentation/image_store.js.html +359 -0
package/docs/documentation/image_tools.js.html +792 -0
package/docs/documentation/image_utils.js.html +1609 -0
package/docs/documentation/index.html +175 -0
package/docs/documentation/loaders_commonLoader.js.html +306 -0
package/docs/documentation/loaders_dicomLoader.js.html +130 -0
package/docs/documentation/loaders_fileLoader.js.html +155 -0
package/docs/documentation/loaders_multiframeLoader.js.html +443 -0
package/docs/documentation/loaders_niftiLoader.js.html +150 -0
package/docs/documentation/loaders_nrrdLoader.js.html +545 -0
package/docs/documentation/loaders_resliceLoader.js.html +258 -0
package/docs/documentation/module-imaging_contours.html +954 -0
package/docs/documentation/module-imaging_imageAnonymization.html +544 -0
package/docs/documentation/module-imaging_imageColormaps.html +1012 -0
package/docs/documentation/module-imaging_imageContours.html +954 -0
package/docs/documentation/module-imaging_imageIo.html +1057 -0
package/docs/documentation/module-imaging_imageLayers.html +904 -0
package/docs/documentation/module-imaging_imageLoading.html +1301 -0
package/docs/documentation/module-imaging_imageParsing.html +1356 -0
package/docs/documentation/module-imaging_imagePresets.html +679 -0
package/docs/documentation/module-imaging_imageRendering.html +3223 -0
package/docs/documentation/module-imaging_imageReslice.html +413 -0
package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +284 -0
package/docs/documentation/module-imaging_imageStore.html +1560 -0
package/docs/documentation/module-imaging_imageTools.html +3617 -0
package/docs/documentation/module-imaging_imageUtils.html +7253 -0
package/docs/documentation/module-imaging_io.html +1057 -0
package/docs/documentation/module-imaging_layers.html +904 -0
package/docs/documentation/module-imaging_loading.html +1301 -0
package/docs/documentation/module-imaging_parsing.html +1375 -0
package/docs/documentation/module-imaging_presets.html +679 -0
package/docs/documentation/module-imaging_rendering.html +8094 -0
package/docs/documentation/module-imaging_reslice.html +411 -0
package/docs/documentation/module-imaging_store-Larvitar_Store.html +284 -0
package/docs/documentation/module-imaging_store.html +1537 -0
package/docs/documentation/module-imaging_strategies_eraseFreehand.html +708 -0
package/docs/documentation/module-imaging_strategies_fillFreehand.html +708 -0
package/docs/documentation/module-imaging_tools.html +3617 -0
package/docs/documentation/module-imaging_tools_custom_contourTool.html +207 -0
package/docs/documentation/module-imaging_tools_custom_diameterTool.html +205 -0
package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +205 -0
package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +203 -0
package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +684 -0
package/docs/documentation/module-imaging_tools_default.html +205 -0
package/docs/documentation/module-imaging_tools_interaction.html +530 -0
package/docs/documentation/module-imaging_tools_io.html +832 -0
package/docs/documentation/module-imaging_tools_main.html +2028 -0
package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +567 -0
package/docs/documentation/module-imaging_tools_segmentation.html +3586 -0
package/docs/documentation/module-imaging_tools_state.html +494 -0
package/docs/documentation/module-imaging_utils.html +7253 -0
package/docs/documentation/module-loaders_commonLoader.html +1313 -0
package/docs/documentation/module-loaders_dicomLoader.html +522 -0
package/docs/documentation/module-loaders_fileLoader.html +593 -0
package/docs/documentation/module-loaders_multiframeLoader.html +1169 -0
package/docs/documentation/module-loaders_niftiLoader.html +565 -0
package/docs/documentation/module-loaders_nrrdLoader.html +1459 -0
package/docs/documentation/module-loaders_resliceLoader.html +590 -0
package/docs/documentation/module-monitors_memory.html +980 -0
package/docs/documentation/module-tools_default.html +740 -0
package/docs/documentation/module.exports_module.exports.html +203 -0
package/docs/documentation/monitors_memory.js.html +189 -0
package/docs/documentation/parsers_nrrd.js.html +569 -0
package/docs/documentation/scripts/collapse.js +20 -0
package/docs/documentation/scripts/linenumber.js +25 -0
package/docs/documentation/scripts/nav.js +12 -0
package/docs/documentation/scripts/polyfill.js +4 -0
package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +202 -0
package/docs/documentation/scripts/prettify/lang-css.js +2 -0
package/docs/documentation/scripts/prettify/prettify.js +28 -0
package/docs/documentation/scripts/search.js +83 -0
package/docs/documentation/styles/jsdoc.css +765 -0
package/docs/documentation/styles/prettify.css +80 -0
package/docs/documentation/tools_contourTool.js.html +1963 -0
package/docs/documentation/tools_custom_contourTool.js.html +1968 -0
package/docs/documentation/tools_custom_diameterTool.js.html +225 -0
package/docs/documentation/tools_custom_editMaskTool.js.html +225 -0
package/docs/documentation/tools_custom_polylineScissorsTool.js.html +143 -0
package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +245 -0
package/docs/documentation/tools_default.js.html +576 -0
package/docs/documentation/tools_diameterTool.js.html +219 -0
package/docs/documentation/tools_editMaskTool.js.html +219 -0
package/docs/documentation/tools_interaction.js.html +258 -0
package/docs/documentation/tools_io.js.html +297 -0
package/docs/documentation/tools_main.js.html +443 -0
package/docs/documentation/tools_polygonSegmentationMixin.js.html +329 -0
package/docs/documentation/tools_polylineScissorsTool.js.html +136 -0
package/docs/documentation/tools_seedTool.js.html +423 -0
package/docs/documentation/tools_segmentation.js.html +558 -0
package/docs/documentation/tools_state.js.html +163 -0
package/docs/documentation/tools_strategies_eraseFreehand.js.html +160 -0
package/docs/documentation/tools_strategies_fillFreehand.js.html +163 -0
package/docs/documentation/tools_thresholdsBrushTool.js.html +239 -0
package/docs/documentation/tools_tools.default.js.html +569 -0
package/docs/documentation/tools_tools.interaction.js.html +251 -0
package/docs/documentation/tools_tools.io.js.html +288 -0
package/docs/documentation/tools_tools.main.js.html +442 -0
package/docs/documentation/tools_tools.segmentation.js.html +445 -0
package/docs/documentation/tools_tools.state.js.html +157 -0
package/docs/examples/base.html +170 -0
package/docs/examples/colorMaps.html +181 -0
package/docs/examples/defaultTools.html +246 -0
package/docs/examples/demo/anon1 +0 -0
package/docs/examples/demo/anon10 +0 -0
package/docs/examples/demo/anon11 +0 -0
package/docs/examples/demo/anon12 +0 -0
package/docs/examples/demo/anon13 +0 -0
package/docs/examples/demo/anon14 +0 -0
package/docs/examples/demo/anon15 +0 -0
package/docs/examples/demo/anon16 +0 -0
package/docs/examples/demo/anon17 +0 -0
package/docs/examples/demo/anon18 +0 -0
package/docs/examples/demo/anon19 +0 -0
package/docs/examples/demo/anon2 +0 -0
package/docs/examples/demo/anon20 +0 -0
package/docs/examples/demo/anon21 +0 -0
package/docs/examples/demo/anon22 +0 -0
package/docs/examples/demo/anon23 +0 -0
package/docs/examples/demo/anon24 +0 -0
package/docs/examples/demo/anon3 +0 -0
package/docs/examples/demo/anon4 +0 -0
package/docs/examples/demo/anon5 +0 -0
package/docs/examples/demo/anon6 +0 -0
package/docs/examples/demo/anon7 +0 -0
package/docs/examples/demo/anon8 +0 -0
package/docs/examples/demo/anon9 +0 -0
package/docs/examples/demo/example.nrrd +0 -0
package/docs/examples/demo/segmentation.nrrd +0 -0
package/docs/examples/demo/xa_integris.dcm +0 -0
package/docs/examples/index.html +129 -0
package/docs/examples/larvitar.js +108623 -0
package/docs/examples/layers.html +250 -0
package/docs/examples/masks.html +273 -0
package/docs/examples/multiframe.html +200 -0
package/docs/examples/nrrd.html +96 -0
package/docs/examples/reslice.html +174 -0
package/docs/index.html +92 -0
package/imaging/dataDictionary.json +21865 -21865
package/imaging/imageAnonymization.js +161 -0
package/imaging/{image_colormaps.js → imageColormaps.js} +2 -2
package/imaging/{image_contours.js → imageContours.js} +1 -2
package/imaging/{image_io.js → imageIo.js} +18 -15
package/imaging/{image_layers.js → imageLayers.js} +2 -2
package/imaging/{image_loading.js → imageLoading.js} +9 -6
package/imaging/imageParsing.js +301 -0
package/imaging/{image_presets.js → imagePresets.js} +2 -2
package/imaging/{image_rendering.js → imageRendering.js} +36 -32
package/imaging/imageReslice.js +78 -0
package/imaging/{image_store.js → imageStore.js} +8 -7
package/imaging/{image_tools.js → imageTools.js} +15 -23
package/imaging/{image_utils.js → imageUtils.js} +1 -1
package/imaging/loaders/commonLoader.js +1 -1
package/imaging/loaders/dicomLoader.js +1 -1
package/imaging/loaders/fileLoader.js +2 -2
package/imaging/loaders/multiframeLoader.js +6 -2
package/imaging/loaders/nrrdLoader.js +11 -7
package/imaging/tools/{contourTool.js → custom/contourTool.js} +25 -20
package/imaging/tools/{diameterTool.js → custom/diameterTool.js} +9 -3
package/imaging/tools/{editMaskTool.js → custom/editMaskTool.js} +7 -1
package/imaging/tools/{polylineScissorsTool.js → custom/polylineScissorsTool.js} +12 -5
package/imaging/tools/{seedTool.js → custom/seedTool.js} +3 -3
package/imaging/tools/{thresholdsBrushTool.js → custom/thresholdsBrushTool.js} +7 -1
package/imaging/tools/{tools.default.js → default.js} +10 -3
package/imaging/tools/{tools.interaction.js → interaction.js} +13 -6
package/imaging/tools/{tools.io.js → io.js} +15 -6
package/imaging/tools/{tools.main.js → main.js} +16 -14
package/imaging/tools/polygonSegmentationMixin.js +8 -4
package/imaging/tools/{tools.segmentation.js → segmentation.js} +171 -58
package/imaging/tools/segmentations.md +38 -0
package/imaging/tools/setLabelMap3D.js +248 -0
package/imaging/tools/{tools.state.js → state.js} +7 -1
package/imaging/tools/strategies/eraseFreehand.js +8 -9
package/imaging/tools/strategies/fillFreehand.js +8 -9
package/index.js +44 -39
package/modules/vuex/larvitar.js +13 -3
package/package.json +13 -10
package/imaging/image_parsing.js +0 -307
package/imaging/image_reslice.js +0 -80

package/docs/documentation/module-imaging_tools_segmentation.html ADDED Viewed

@@ -0,0 +1,3586 @@
+<!DOCTYPE html>
+<html lang="en">
+<head>
+    <meta charset="utf-8">
+    <title>imaging/tools/segmentation - Larvitar</title>
+    <meta name="description" content="Dicom Image Toolkit for CornestoneJS" />
+        <meta name="keywords" content="imaging, dataviz, medical, cornerstone" />
+        <meta name="keyword" content="imaging, dataviz, medical, cornerstone" />
+    <script src="scripts/prettify/prettify.js"></script>
+    <script src="scripts/prettify/lang-css.js"></script>
+    <!--[if lt IE 9]>
+      <script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
+    <![endif]-->
+    <link type="text/css" rel="stylesheet" href="styles/prettify.css">
+    <link type="text/css" rel="stylesheet" href="styles/jsdoc.css">
+    <script src="scripts/nav.js" defer></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+</head>
+<body>
+<input type="checkbox" id="nav-trigger" class="nav-trigger" />
+<label for="nav-trigger" class="navicon-button x">
+  <div class="navicon"></div>
+</label>
+<label for="nav-trigger" class="overlay"></label>
+<nav >
+    <input type="text" id="nav-search" placeholder="Search" />
+    <h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module-imaging_imageStore-Larvitar_Store.html">imaging/imageStore~Larvitar_Store</a></li><li><a href="module-imaging_tools_custom_polygonScissorsTool.html">imaging/tools/custom/polygonScissorsTool</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_imageAnonymization.html">imaging/imageAnonymization</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageAnonymization.html#anonymize#~anonymize">anonymize</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageAnonymization.html#encrypt#~encrypt">encrypt</a></li></ul></li><li><a href="module-imaging_imageColormaps.html">imaging/imageColormaps</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#HSVToRGB#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#addColorMap#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#applyColorMap#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#fillPixelData#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#getColormapsList#getColormapsList">getColormapsList</a></li></ul></li><li><a href="module-imaging_imageContours.html">imaging/imageContours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageContours.html#extractSlicePoints#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageContours.html#populateContoursObject#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageContours.html#parseContours#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_imageIo.html">imaging/imageIo</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#buildData#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#buildDataAsync#~buildDataAsync">buildDataAsync</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#buildHeader#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#getCachedPixelData#~getCachedPixelData">getCachedPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#importNRRDImage#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_imageLayers.html">imaging/imageLayers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#getActiveLayer#getActiveLayer">getActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#setActiveLayer#setActiveLayer">setActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#updateLayer#updateLayer">updateLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#buildLayers#~buildLayers">buildLayers</a></li></ul></li><li><a href="module-imaging_imageLoading.html">imaging/imageLoading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#initializeFileImageLoader#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#initializeImageLoader#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#initializeWebImageLoader#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#registerMultiFrameImageLoader#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#registerNRRDImageLoader#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#registerResliceLoader#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#updateLoadedStack#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#isNewInstance#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_imageParsing.html">imaging/imageParsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#clearImageParsing#clearImageParsing">clearImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseDataSet#parseDataSet">parseDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#readFile#readFile">readFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#readFiles#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseFile#~parseFile">parseFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseFiles#~parseFiles">parseFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseNextFile#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_imagePresets.html">imaging/imagePresets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imagePresets.html#getImagePresets#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imagePresets.html#setImageCustomPreset#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imagePresets.html#setImagePreset#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_imageRendering.html">imaging/imageRendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#clearImageCache#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#disableViewport#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#flipImageHorizontal#flipImageHorizontal">flipImageHorizontal</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#flipImageVertical#flipImageVertical">flipImageVertical</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#getSeriesData#getSeriesData">getSeriesData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#invertImage#invertImage">invertImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#loadAndCacheImages#loadAndCacheImages">loadAndCacheImages</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#renderImage#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#resetViewports#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#resizeViewport#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#rotateImageLeft#rotateImageLeft">rotateImageLeft</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#rotateImageRight#rotateImageRight">rotateImageRight</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#storeViewportData#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#unloadViewport#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#updateImage#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#updateViewportData#updateViewportData">updateViewportData</a></li></ul></li><li><a href="module-imaging_imageReslice.html">imaging/imageReslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageReslice.html#resliceSeries#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_imageStore.html">imaging/imageStore</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_imageStore.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#initLarvitarStore#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#addSeriesIds#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#addViewport#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#deleteViewport#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#disableVuex#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#enableVuex#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#get#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#removeSeriesIds#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#set#~set">set</a></li></ul></li><li><a href="module-imaging_imageTools.html">imaging/imageTools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addContoursTool#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addDiameterTool#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addMaskEditingTool#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addSeedsTool#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addStackStateToElement#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addToolStateSingleSlice#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#clearCornerstoneElements#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#clearMeasurements#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#clearToolStateByName#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#getCurrentMaskData#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#getToolState#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setSegmentationConfig#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#syncToolStack#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#updateDiameterTool#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#updateStackToolState#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_imageUtils.html">imaging/imageUtils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#formatDate#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#formatDateTime#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getCmprMetadata#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getDICOMTag#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getDICOMTagCode#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getDistanceBetweenSlices#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getMaxPixelValue#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getMeanValue#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getMinPixelValue#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getNormalOrientation#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getPixelRepresentation#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getPixelTypedArray#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedIOP#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedIPP#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedMetadata#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedPixeldata#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedSliceLocation#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getSortedStack#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getSortedUIDs#getSortedUIDs">getSortedUIDs</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getTagValue#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getTypedArray#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getTypedArrayFromDataType#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isElement#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isNegativeSign#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isStringVr#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isValidDate#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseAgeTag#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseDateTag#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseDateTimeTag#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseDICOMFileIDTag#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parsePatientNameTag#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseTag#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseTimeTag#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#permuteSignedArrays#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#permuteValues#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#rand#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#randomId#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#sortStackCallback#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#spacingArray#spacingArray">spacingArray</a></li></ul></li><li><a href="module-imaging_strategies_eraseFreehand.html">imaging/strategies/eraseFreehand</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_strategies_eraseFreehand.html#eraseInsideFreehand#.eraseInsideFreehand">eraseInsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_eraseFreehand.html#eraseOutsideFreehand#.eraseOutsideFreehand">eraseOutsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_eraseFreehand.html#eraseFreehand#~eraseFreehand">eraseFreehand</a></li></ul></li><li><a href="module-imaging_strategies_fillFreehand.html">imaging/strategies/fillFreehand</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_strategies_fillFreehand.html#fillInsideFreehand#.fillInsideFreehand">fillInsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_fillFreehand.html#fillOutsideFreehand#.fillOutsideFreehand">fillOutsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_fillFreehand.html#fillFreehand#~fillFreehand">fillFreehand</a></li></ul></li><li><a href="module-imaging_tools_custom_contourTool.html">imaging/tools/custom/contourTool</a></li><li><a href="module-imaging_tools_custom_diameterTool.html">imaging/tools/custom/diameterTool</a></li><li><a href="module-imaging_tools_custom_editMaskTool.html">imaging/tools/custom/editMaskTool</a></li><li><a href="module-imaging_tools_custom_polygonScissorsTool.html">imaging/tools/custom/polygonScissorsTool</a></li><li><a href="module-imaging_tools_custom_thresholdBrushTool.html">imaging/tools/custom/thresholdBrushTool</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_custom_thresholdBrushTool.html#_paint#_paint">_paint</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_custom_thresholdBrushTool.html#getCircleWithThreshold#~getCircleWithThreshold">getCircleWithThreshold</a></li></ul></li><li><a href="module-imaging_tools_default.html">imaging/tools/default</a></li><li><a href="module-imaging_tools_interaction.html">imaging/tools/interaction</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_interaction.html#addMouseKeyHandlers#.addMouseKeyHandlers">addMouseKeyHandlers</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_interaction.html#toggleMouseHandlers#toggleMouseHandlers">toggleMouseHandlers</a></li></ul></li><li><a href="module-imaging_tools_io.html">imaging/tools/io</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_tools_io.html#.exportAnnotations">exportAnnotations</a></li><li data-type='member' style='display: none;'><a href="module-imaging_tools_io.html#.loadAnnotations">loadAnnotations</a></li><li data-type='member' style='display: none;'><a href="module-imaging_tools_io.html#.saveAnnotations">saveAnnotations</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_io.html#generateCSV#.generateCSV">generateCSV</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_io.html#download#~download">download</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_io.html#extractToolInfo#~extractToolInfo">extractToolInfo</a></li></ul></li><li><a href="module-imaging_tools_main.html">imaging/tools/main</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#csToolsUpdateImageIndex#.csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#addTool#~addTool">addTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#csToolsCreateStack#~csToolsCreateStack">csToolsCreateStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#initializeCSTools#~initializeCSTools">initializeCSTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolDisabled#~setToolDisabled">setToolDisabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolsStyle#~setToolsStyle">setToolsStyle</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#tryUpdateImage#~tryUpdateImage">tryUpdateImage</a></li></ul></li><li><a href="module-imaging_tools_polygonSegmentationMixin.html">imaging/tools/polygonSegmentationMixin</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_polygonSegmentationMixin.html#_checkIfDrawing#~_checkIfDrawing">_checkIfDrawing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_polygonSegmentationMixin.html#renderToolData#~renderToolData">renderToolData</a></li></ul></li><li><a href="module-imaging_tools_segmentation.html">imaging/tools/segmentation</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#addSegmentationMask#.addSegmentationMask">addSegmentationMask</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#clearSegmentationState#.clearSegmentationState">clearSegmentationState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#deleteMask#.deleteMask">deleteMask</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#disableBrushTool#.disableBrushTool">disableBrushTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#enableBrushTool#.enableBrushTool">enableBrushTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#forceRender#.forceRender">forceRender</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#getActiveLabelmapBuffer#.getActiveLabelmapBuffer">getActiveLabelmapBuffer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#getLabelColor#.getLabelColor">getLabelColor</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#initSegmentationModule#.initSegmentationModule">initSegmentationModule</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#loadMaskSlice#.loadMaskSlice">loadMaskSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#redoLastStroke#.redoLastStroke">redoLastStroke</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setActiveLabelmap#.setActiveLabelmap">setActiveLabelmap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setActiveLabelOpacity#.setActiveLabelOpacity">setActiveLabelOpacity</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setActiveSegment#.setActiveSegment">setActiveSegment</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setBrushProps#.setBrushProps">setBrushProps</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setInactiveLabelOpacity#.setInactiveLabelOpacity">setInactiveLabelOpacity</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setLabelColor#.setLabelColor">setLabelColor</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setMaskProps#.setMaskProps">setMaskProps</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#toggleContourMode#.toggleContourMode">toggleContourMode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#toggleVisibility#.toggleVisibility">toggleVisibility</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#undoLastStroke#.undoLastStroke">undoLastStroke</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#generateLUT#~generateLUT">generateLUT</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#generateUniformLUT#~generateUniformLUT">generateUniformLUT</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#HSVtoRGB#~HSVtoRGB">HSVtoRGB</a></li></ul></li><li><a href="module-imaging_tools_state.html">imaging/tools/state</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_state.html#restoreToolState#~restoreToolState">restoreToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_state.html#saveToolState#~saveToolState">saveToolState</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageTracker#getLarvitarImageTracker">getLarvitarImageTracker</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesDataFromLarvitarManager#getSeriesDataFromLarvitarManager">getSeriesDataFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#populateLarvitarManager#populateLarvitarManager">populateLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#removeSeriesFromLarvitarManager#removeSeriesFromLarvitarManager">removeSeriesFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#resetLarvitarManager#resetLarvitarManager">resetLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#updateLarvitarManager#updateLarvitarManager">updateLarvitarManager</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId#getDicomImageId">getDicomImageId</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_multiframeLoader.html">loaders/multiframeLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#clearMultiFrameCache#clearMultiFrameCache">clearMultiFrameCache</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#getMultiFrameImageId#getMultiFrameImageId">getMultiFrameImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#setPixelDataType#setPixelDataType">setPixelDataType</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#buildMultiFrameImage#~buildMultiFrameImage">buildMultiFrameImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#loadMultiFrameImage#~loadMultiFrameImage">loadMultiFrameImage</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage#loadNrrdImage">loadNrrdImage</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-monitors_memory.html">monitors/memory</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemoryAllocation#checkMemoryAllocation">checkMemoryAllocation</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemorySupport#checkMemorySupport">checkMemorySupport</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getAvailableMemory#getAvailableMemory">getAvailableMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getMB#getMB">getMB</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getUsedMemory#getUsedMemory">getUsedMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#setAvailableMemory#setAvailableMemory">setAvailableMemory</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#getDefaultToolsByType#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#setDefaultToolsProps#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingDoubleTapClickCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseDoubleClickCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseDownCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseDownCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseDragCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseDragCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseMoveCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseUpCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseUpCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingTouchDragCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingTouchDragCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingTouchStartCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingTouchStartCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_editMouseDragCallback">imaging/tools/custom/contourTool.ContoursTool#_editMouseDragCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_editTouchDragCallback">imaging/tools/custom/contourTool.ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#getSegmentsOnPixelData">getSegmentsOnPixelData</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#setLabelmap3DByFirstImageId">setLabelmap3DByFirstImageId</a></li><li><a href="global.html#setLabelmap3DForElement">setLabelmap3DForElement</a></li></ul>
+</nav>
+<div id="main">
+    <h1 class="page-title">imaging/tools/segmentation</h1>
+<section>
+<header>
+</header>
+<article>
+        <div class="container-overview">
+                <div class="description usertext"><p>This file provides functionalities<br>
+for handling masks and luts</p></div>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>This file provides functionalities<br>
+for handling masks and luts</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line1">line 1</a>
+    </li></ul></dd>
+</dl>
+        </div>
+        <h3 class="subsection-title">Methods</h3>
+    <h4 class="name" id=".addSegmentationMask"><span class="type-signature">(static) </span>addSegmentationMask<span class="signature">(maskProps, data, elementId)</span><span class="type-signature"> &rarr; {Promise}</span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Add segmentation mask to segmentation module</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line179">line 179</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>maskProps</code></td>
+            <td class="type">
+<span class="param-type">Object</span>
+            </td>
+            <td class="description last"><p>The mask properties (labelId, color and opacity)</p></td>
+        </tr>
+        <tr>
+                <td class="name"><code>data</code></td>
+            <td class="type">
+<span class="param-type">TypedArray</span>
+            </td>
+            <td class="description last"><p>The mask data array</p></td>
+        </tr>
+        <tr>
+                <td class="name"><code>elementId</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>The target html element Id or its DOM HTMLElement</p></td>
+        </tr>
+    </tbody>
+</table>
+<h5>Returns:</h5>
+<div class="param-desc">
+    <ul>
+<li>Return a promise which will resolve when segmentation mask is added</li>
+</ul>
+</div>
+<dl class="param-type">
+    <dt>
+        Type
+    </dt>
+    <dd>
+<span class="param-type">Promise</span>
+    </dd>
+</dl>
+    <h4 class="name" id=".clearSegmentationState"><span class="type-signature">(static) </span>clearSegmentationState<span class="signature">()</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Clear state for segmentation module</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line401">line 401</a>
+    </li></ul></dd>
+</dl>
+    <h4 class="name" id=".deleteMask"><span class="type-signature">(static) </span>deleteMask<span class="signature">(labelId)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Delete mask from state</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line470">line 470</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>labelId</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"><p>The labelmap id to activate</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".disableBrushTool"><span class="type-signature">(static) </span>disableBrushTool<span class="signature">(toolToActivate)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Disable brushing</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line420">line 420</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>toolToActivate</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>The name of the tool to activate after removing the brush</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".enableBrushTool"><span class="type-signature">(static) </span>enableBrushTool<span class="signature">(dimension, thresholds)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Enable brushing</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line410">line 410</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>dimension</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"><p>The initial brush radius</p></td>
+        </tr>
+        <tr>
+                <td class="name"><code>thresholds</code></td>
+            <td class="type">
+<span class="param-type">Array</span>
+            </td>
+            <td class="description last"><p>The threshold values (min and max)</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".forceRender"><span class="type-signature">(static) </span>forceRender<span class="signature">()</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Force cs tools refresh on all enabled images</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line105">line 105</a>
+    </li></ul></dd>
+</dl>
+    <h4 class="name" id=".getActiveLabelmapBuffer"><span class="type-signature">(static) </span>getActiveLabelmapBuffer<span class="signature">(elementId)</span><span class="type-signature"> &rarr; {Object}</span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Get active labelmap for target element</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line261">line 261</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>elementId</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>The target html element Id or its DOM HTMLElement</p></td>
+        </tr>
+    </tbody>
+</table>
+<h5>Returns:</h5>
+<div class="param-desc">
+    <p>The active labelmap object that contains the buffer</p>
+</div>
+<dl class="param-type">
+    <dt>
+        Type
+    </dt>
+    <dd>
+<span class="param-type">Object</span>
+    </dd>
+</dl>
+    <h4 class="name" id=".getLabelColor"><span class="type-signature">(static) </span>getLabelColor<span class="signature">(labelId)</span><span class="type-signature"> &rarr; {String}</span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Get color from label</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line156">line 156</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>labelId</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"></td>
+        </tr>
+    </tbody>
+</table>
+<h5>Returns:</h5>
+<div class="param-desc">
+    <p>Color in hex format</p>
+</div>
+<dl class="param-type">
+    <dt>
+        Type
+    </dt>
+    <dd>
+<span class="param-type">String</span>
+    </dd>
+</dl>
+    <h4 class="name" id=".initSegmentationModule"><span class="type-signature">(static) </span>initSegmentationModule<span class="signature">(customConfig)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>A function to group all settings to load before masks</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line166">line 166</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>customConfig</code></td>
+            <td class="type">
+<span class="param-type">Object</span>
+            </td>
+            <td class="description last"><p>Object containing override values for segmentation module config</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".loadMaskSlice"><span class="type-signature">(static) </span>loadMaskSlice<span class="signature">(elementId, sliceIndex, pixelData)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Set a new mask slice into the labelmap buffer</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line213">line 213</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>elementId</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>The target html element Id or its DOM HTMLElement</p></td>
+        </tr>
+        <tr>
+                <td class="name"><code>sliceIndex</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"><p>the index of the new mask slice</p></td>
+        </tr>
+        <tr>
+                <td class="name"><code>pixelData</code></td>
+            <td class="type">
+<span class="param-type">ArrayBuffer</span>
+            </td>
+            <td class="description last"><p>the pixelData array</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".redoLastStroke"><span class="type-signature">(static) </span>redoLastStroke<span class="signature">(elementId)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Redo last brush operation (stroke)</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line454">line 454</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>elementId</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>The target html element Id or its DOM HTMLElement</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".setActiveLabelmap"><span class="type-signature">(static) </span>setActiveLabelmap<span class="signature">(labelId, elementId)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Activate a specific labelmap through its labelId</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line245">line 245</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>labelId</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"><p>The labelmap id to activate</p></td>
+        </tr>
+        <tr>
+                <td class="name"><code>elementId</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>The target html element Id or its DOM HTMLElement</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".setActiveLabelOpacity"><span class="type-signature">(static) </span>setActiveLabelOpacity<span class="signature">(opacity)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Change opacity for active label</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line292">line 292</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>opacity</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"><p>The desired opacity value</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".setActiveSegment"><span class="type-signature">(static) </span>setActiveSegment<span class="signature">(segmentIndex, elementId)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Activate a specific segment through its index</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line277">line 277</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>segmentIndex</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"><p>The segment index to activate</p></td>
+        </tr>
+        <tr>
+                <td class="name"><code>elementId</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>The target html element Id or its DOM HTMLElement</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".setBrushProps"><span class="type-signature">(static) </span>setBrushProps<span class="signature">(props)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Change the brush props</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line429">line 429</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>props</code></td>
+            <td class="type">
+<span class="param-type">Object</span>
+            </td>
+            <td class="description last"><p>The new brush props {radius: number[px], thresholds: array[min,max]}</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".setInactiveLabelOpacity"><span class="type-signature">(static) </span>setInactiveLabelOpacity<span class="signature">(opacity)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Change opacity for inactive labels</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line301">line 301</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>opacity</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"><p>The desired opacity value</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".setLabelColor"><span class="type-signature">(static) </span>setLabelColor<span class="signature">(labelId, color)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Set color for label</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line143">line 143</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>labelId</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"></td>
+        </tr>
+        <tr>
+                <td class="name"><code>color</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>in hex format</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".setMaskProps"><span class="type-signature">(static) </span>setMaskProps<span class="signature">(maskProps)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Set mask appearance props</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line349">line 349</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>maskProps</code></td>
+            <td class="type">
+<span class="param-type">Object</span>
+            </td>
+            <td class="description last"><p>The mask appearance props (labelId, visualization [0=filled, 1=contour, 2=hidden], opacity (if mode=0), between 0 and 1)</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".toggleContourMode"><span class="type-signature">(static) </span>toggleContourMode<span class="signature">(toggle)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Toggle between 'contours mode' and 'filled mode'</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line328">line 328</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>toggle</code></td>
+            <td class="type">
+<span class="param-type">Bool</span>
+            </td>
+            <td class="description last"><p>Contour mode enabled if true</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".toggleVisibility"><span class="type-signature">(static) </span>toggleVisibility<span class="signature">(elementId, labelId)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Toggle mask visibility</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line311">line 311</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>elementId</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>The target html element Id or its DOM HTMLElement</p></td>
+        </tr>
+        <tr>
+                <td class="name"><code>labelId</code></td>
+            <td class="type">
+<span class="param-type">Number</span>
+            </td>
+            <td class="description last"><p>The id of the mask label</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id=".undoLastStroke"><span class="type-signature">(static) </span>undoLastStroke<span class="signature">(elementId)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Undo last brush operation (stroke)</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line438">line 438</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>elementId</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>The target html element Id or its DOM HTMLElement</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id="~generateLUT"><span class="type-signature">(inner) </span>generateLUT<span class="signature">()</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Generate the custom LUT - single volume version</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line116">line 116</a>
+    </li></ul></dd>
+</dl>
+    <h4 class="name" id="~generateUniformLUT"><span class="type-signature">(inner) </span>generateUniformLUT<span class="signature">(hex_color, opacity)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Generate the custom LUT - multiple volume version</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line130">line 130</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>hex_color</code></td>
+            <td class="type">
+<span class="param-type">String</span>
+            </td>
+            <td class="description last"><p>color for LUT in the #RRGGBB form</p></td>
+        </tr>
+        <tr>
+                <td class="name"><code>opacity</code></td>
+            <td class="type">
+<span class="param-type">NUmber</span>
+            </td>
+            <td class="description last"><p>number between 0 and 1</p></td>
+        </tr>
+    </tbody>
+</table>
+    <h4 class="name" id="~HSVtoRGB"><span class="type-signature">(inner) </span>HSVtoRGB<span class="signature">(color)</span><span class="type-signature"></span></h4>
+<dl class="details">
+    <dt class="tag-description">Description:</dt>
+    <dd class="tag-description"><ul class="dummy"><li><p>Convert color from hsv to rgb</p></li></ul></dd>
+    <dt class="tag-source">Source:</dt>
+    <dd class="tag-source"><ul class="dummy"><li>
+        <a href="tools_segmentation.js.html">tools/segmentation.js</a>, <a href="tools_segmentation.js.html#line72">line 72</a>
+    </li></ul></dd>
+</dl>
+    <h5>Parameters:</h5>
+<table class="params">
+    <thead>
+    <tr>
+        <th>Name</th>
+        <th>Type</th>
+        <th class="last">Description</th>
+    </tr>
+    </thead>
+    <tbody>
+        <tr>
+                <td class="name"><code>color</code></td>
+            <td class="type">
+<span class="param-type">Array</span>
+            </td>
+            <td class="description last"><p>as [h,s,v] 0-1</p></td>
+        </tr>
+    </tbody>
+</table>
+<h5>Returns:</h5>
+<div class="param-desc">
+    <p>color as [r,g,b] 0-255</p>
+</div>
+</article>
+</section>
+</div>
+<br class="clear">
+<footer>
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 3.6.7</a> using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+</footer>
+<script>prettyPrint();</script>
+<script src="scripts/polyfill.js"></script>
+<script src="scripts/linenumber.js"></script>
+<script src="scripts/search.js" defer></script>
+<script src="scripts/collapse.js" defer></script>
+</body>
+</html>