npm - larvitar - Versions diffs - 0.18.2 → 1.2.0 - Mend

larvitar 0.18.2 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (229) hide show

package/.github/workflows/deploy.yml +3 -12
package/MIGRATION.md +25 -0
package/README.md +28 -27
package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +171 -0
package/docs/documentation/Tools.Annotation.ContoursTool.html +218 -0
package/docs/documentation/Tools.Annotation.DiameterTool.html +219 -0
package/docs/documentation/Tools.Annotation.SeedsTool.html +214 -0
package/docs/documentation/Tools.Brush.BrushTool.html +218 -0
package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +218 -0
package/docs/documentation/Tools.PolylineScissorsTool.html +218 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +978 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +1049 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
package/docs/documentation/global.html +1303 -0
package/docs/documentation/imageAnonymization.js.html +245 -0
package/docs/documentation/imageColormaps.js.html +283 -0
package/docs/documentation/imageContours.js.html +278 -0
package/docs/documentation/imageIo.js.html +291 -0
package/docs/documentation/imageLayers.js.html +188 -0
package/docs/documentation/imageLoading.js.html +297 -0
package/docs/documentation/imageParsing.js.html +385 -0
package/docs/documentation/imagePresets.js.html +207 -0
package/docs/documentation/imageRendering.js.html +849 -0
package/docs/documentation/imageReslice.js.html +162 -0
package/docs/documentation/imageStore.js.html +360 -0
package/docs/documentation/imageTools.js.html +784 -0
package/docs/documentation/imageUtils.js.html +1609 -0
package/docs/documentation/image_colormaps.js.html +283 -0
package/docs/documentation/image_contours.js.html +279 -0
package/docs/documentation/image_io.js.html +288 -0
package/docs/documentation/image_layers.js.html +188 -0
package/docs/documentation/image_loading.js.html +294 -0
package/docs/documentation/image_parsing.js.html +391 -0
package/docs/documentation/image_presets.js.html +207 -0
package/docs/documentation/image_rendering.js.html +845 -0
package/docs/documentation/image_reslice.js.html +164 -0
package/docs/documentation/image_store.js.html +359 -0
package/docs/documentation/image_tools.js.html +792 -0
package/docs/documentation/image_utils.js.html +1609 -0
package/docs/documentation/index.html +175 -0
package/docs/documentation/loaders_commonLoader.js.html +306 -0
package/docs/documentation/loaders_dicomLoader.js.html +130 -0
package/docs/documentation/loaders_fileLoader.js.html +155 -0
package/docs/documentation/loaders_multiframeLoader.js.html +443 -0
package/docs/documentation/loaders_niftiLoader.js.html +150 -0
package/docs/documentation/loaders_nrrdLoader.js.html +545 -0
package/docs/documentation/loaders_resliceLoader.js.html +258 -0
package/docs/documentation/module-imaging_contours.html +954 -0
package/docs/documentation/module-imaging_imageAnonymization.html +544 -0
package/docs/documentation/module-imaging_imageColormaps.html +1012 -0
package/docs/documentation/module-imaging_imageContours.html +954 -0
package/docs/documentation/module-imaging_imageIo.html +1057 -0
package/docs/documentation/module-imaging_imageLayers.html +904 -0
package/docs/documentation/module-imaging_imageLoading.html +1301 -0
package/docs/documentation/module-imaging_imageParsing.html +1356 -0
package/docs/documentation/module-imaging_imagePresets.html +679 -0
package/docs/documentation/module-imaging_imageRendering.html +3223 -0
package/docs/documentation/module-imaging_imageReslice.html +413 -0
package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +284 -0
package/docs/documentation/module-imaging_imageStore.html +1560 -0
package/docs/documentation/module-imaging_imageTools.html +3617 -0
package/docs/documentation/module-imaging_imageUtils.html +7253 -0
package/docs/documentation/module-imaging_io.html +1057 -0
package/docs/documentation/module-imaging_layers.html +904 -0
package/docs/documentation/module-imaging_loading.html +1301 -0
package/docs/documentation/module-imaging_parsing.html +1375 -0
package/docs/documentation/module-imaging_presets.html +679 -0
package/docs/documentation/module-imaging_rendering.html +8094 -0
package/docs/documentation/module-imaging_reslice.html +411 -0
package/docs/documentation/module-imaging_store-Larvitar_Store.html +284 -0
package/docs/documentation/module-imaging_store.html +1537 -0
package/docs/documentation/module-imaging_strategies_eraseFreehand.html +708 -0
package/docs/documentation/module-imaging_strategies_fillFreehand.html +708 -0
package/docs/documentation/module-imaging_tools.html +3617 -0
package/docs/documentation/module-imaging_tools_custom_contourTool.html +207 -0
package/docs/documentation/module-imaging_tools_custom_diameterTool.html +205 -0
package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +205 -0
package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +203 -0
package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +684 -0
package/docs/documentation/module-imaging_tools_default.html +205 -0
package/docs/documentation/module-imaging_tools_interaction.html +530 -0
package/docs/documentation/module-imaging_tools_io.html +832 -0
package/docs/documentation/module-imaging_tools_main.html +2028 -0
package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +567 -0
package/docs/documentation/module-imaging_tools_segmentation.html +3586 -0
package/docs/documentation/module-imaging_tools_state.html +494 -0
package/docs/documentation/module-imaging_utils.html +7253 -0
package/docs/documentation/module-loaders_commonLoader.html +1313 -0
package/docs/documentation/module-loaders_dicomLoader.html +522 -0
package/docs/documentation/module-loaders_fileLoader.html +593 -0
package/docs/documentation/module-loaders_multiframeLoader.html +1169 -0
package/docs/documentation/module-loaders_niftiLoader.html +565 -0
package/docs/documentation/module-loaders_nrrdLoader.html +1459 -0
package/docs/documentation/module-loaders_resliceLoader.html +590 -0
package/docs/documentation/module-monitors_memory.html +980 -0
package/docs/documentation/module-tools_default.html +740 -0
package/docs/documentation/module.exports_module.exports.html +203 -0
package/docs/documentation/monitors_memory.js.html +189 -0
package/docs/documentation/parsers_nrrd.js.html +569 -0
package/docs/documentation/scripts/collapse.js +20 -0
package/docs/documentation/scripts/linenumber.js +25 -0
package/docs/documentation/scripts/nav.js +12 -0
package/docs/documentation/scripts/polyfill.js +4 -0
package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +202 -0
package/docs/documentation/scripts/prettify/lang-css.js +2 -0
package/docs/documentation/scripts/prettify/prettify.js +28 -0
package/docs/documentation/scripts/search.js +83 -0
package/docs/documentation/styles/jsdoc.css +765 -0
package/docs/documentation/styles/prettify.css +80 -0
package/docs/documentation/tools_contourTool.js.html +1963 -0
package/docs/documentation/tools_custom_contourTool.js.html +1968 -0
package/docs/documentation/tools_custom_diameterTool.js.html +225 -0
package/docs/documentation/tools_custom_editMaskTool.js.html +225 -0
package/docs/documentation/tools_custom_polylineScissorsTool.js.html +143 -0
package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +245 -0
package/docs/documentation/tools_default.js.html +576 -0
package/docs/documentation/tools_diameterTool.js.html +219 -0
package/docs/documentation/tools_editMaskTool.js.html +219 -0
package/docs/documentation/tools_interaction.js.html +258 -0
package/docs/documentation/tools_io.js.html +297 -0
package/docs/documentation/tools_main.js.html +443 -0
package/docs/documentation/tools_polygonSegmentationMixin.js.html +329 -0
package/docs/documentation/tools_polylineScissorsTool.js.html +136 -0
package/docs/documentation/tools_seedTool.js.html +423 -0
package/docs/documentation/tools_segmentation.js.html +558 -0
package/docs/documentation/tools_state.js.html +163 -0
package/docs/documentation/tools_strategies_eraseFreehand.js.html +160 -0
package/docs/documentation/tools_strategies_fillFreehand.js.html +163 -0
package/docs/documentation/tools_thresholdsBrushTool.js.html +239 -0
package/docs/documentation/tools_tools.default.js.html +569 -0
package/docs/documentation/tools_tools.interaction.js.html +251 -0
package/docs/documentation/tools_tools.io.js.html +288 -0
package/docs/documentation/tools_tools.main.js.html +442 -0
package/docs/documentation/tools_tools.segmentation.js.html +445 -0
package/docs/documentation/tools_tools.state.js.html +157 -0
package/docs/examples/base.html +170 -0
package/docs/examples/colorMaps.html +181 -0
package/docs/examples/defaultTools.html +246 -0
package/docs/examples/demo/anon1 +0 -0
package/docs/examples/demo/anon10 +0 -0
package/docs/examples/demo/anon11 +0 -0
package/docs/examples/demo/anon12 +0 -0
package/docs/examples/demo/anon13 +0 -0
package/docs/examples/demo/anon14 +0 -0
package/docs/examples/demo/anon15 +0 -0
package/docs/examples/demo/anon16 +0 -0
package/docs/examples/demo/anon17 +0 -0
package/docs/examples/demo/anon18 +0 -0
package/docs/examples/demo/anon19 +0 -0
package/docs/examples/demo/anon2 +0 -0
package/docs/examples/demo/anon20 +0 -0
package/docs/examples/demo/anon21 +0 -0
package/docs/examples/demo/anon22 +0 -0
package/docs/examples/demo/anon23 +0 -0
package/docs/examples/demo/anon24 +0 -0
package/docs/examples/demo/anon3 +0 -0
package/docs/examples/demo/anon4 +0 -0
package/docs/examples/demo/anon5 +0 -0
package/docs/examples/demo/anon6 +0 -0
package/docs/examples/demo/anon7 +0 -0
package/docs/examples/demo/anon8 +0 -0
package/docs/examples/demo/anon9 +0 -0
package/docs/examples/demo/example.nrrd +0 -0
package/docs/examples/demo/segmentation.nrrd +0 -0
package/docs/examples/demo/xa_integris.dcm +0 -0
package/docs/examples/index.html +129 -0
package/docs/examples/larvitar.js +108623 -0
package/docs/examples/layers.html +250 -0
package/docs/examples/masks.html +273 -0
package/docs/examples/multiframe.html +200 -0
package/docs/examples/nrrd.html +96 -0
package/docs/examples/reslice.html +174 -0
package/docs/index.html +92 -0
package/imaging/dataDictionary.json +21865 -21865
package/imaging/imageAnonymization.js +161 -0
package/imaging/{image_colormaps.js → imageColormaps.js} +2 -2
package/imaging/{image_contours.js → imageContours.js} +1 -2
package/imaging/{image_io.js → imageIo.js} +18 -15
package/imaging/{image_layers.js → imageLayers.js} +2 -2
package/imaging/{image_loading.js → imageLoading.js} +9 -6
package/imaging/imageParsing.js +301 -0
package/imaging/{image_presets.js → imagePresets.js} +2 -2
package/imaging/{image_rendering.js → imageRendering.js} +36 -32
package/imaging/imageReslice.js +78 -0
package/imaging/{image_store.js → imageStore.js} +8 -7
package/imaging/{image_tools.js → imageTools.js} +15 -23
package/imaging/{image_utils.js → imageUtils.js} +1 -1
package/imaging/loaders/commonLoader.js +1 -1
package/imaging/loaders/dicomLoader.js +1 -1
package/imaging/loaders/fileLoader.js +2 -2
package/imaging/loaders/multiframeLoader.js +6 -2
package/imaging/loaders/nrrdLoader.js +11 -7
package/imaging/tools/{contourTool.js → custom/contourTool.js} +25 -20
package/imaging/tools/{diameterTool.js → custom/diameterTool.js} +9 -3
package/imaging/tools/{editMaskTool.js → custom/editMaskTool.js} +7 -1
package/imaging/tools/{polylineScissorsTool.js → custom/polylineScissorsTool.js} +12 -5
package/imaging/tools/{seedTool.js → custom/seedTool.js} +3 -3
package/imaging/tools/{thresholdsBrushTool.js → custom/thresholdsBrushTool.js} +7 -1
package/imaging/tools/{tools.default.js → default.js} +10 -3
package/imaging/tools/{tools.interaction.js → interaction.js} +13 -6
package/imaging/tools/{tools.io.js → io.js} +15 -6
package/imaging/tools/{tools.main.js → main.js} +16 -14
package/imaging/tools/polygonSegmentationMixin.js +8 -4
package/imaging/tools/{tools.segmentation.js → segmentation.js} +171 -58
package/imaging/tools/segmentations.md +38 -0
package/imaging/tools/setLabelMap3D.js +248 -0
package/imaging/tools/{tools.state.js → state.js} +7 -1
package/imaging/tools/strategies/eraseFreehand.js +8 -9
package/imaging/tools/strategies/fillFreehand.js +8 -9
package/index.js +44 -39
package/modules/vuex/larvitar.js +13 -3
package/package.json +13 -10
package/imaging/image_parsing.js +0 -307
package/imaging/image_reslice.js +0 -80

package/docs/documentation/loaders_nrrdLoader.js.html ADDED Viewed

@@ -0,0 +1,545 @@
+<!DOCTYPE html>
+<html lang="en">
+<head>
+    <meta charset="utf-8">
+    <title>loaders/nrrdLoader.js - Larvitar</title>
+    <meta name="description" content="Dicom Image Toolkit for CornestoneJS" />
+        <meta name="keywords" content="imaging, dataviz, medical, cornerstone" />
+        <meta name="keyword" content="imaging, dataviz, medical, cornerstone" />
+    <script src="scripts/prettify/prettify.js"></script>
+    <script src="scripts/prettify/lang-css.js"></script>
+    <!--[if lt IE 9]>
+      <script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
+    <![endif]-->
+    <link type="text/css" rel="stylesheet" href="styles/prettify.css">
+    <link type="text/css" rel="stylesheet" href="styles/jsdoc.css">
+    <script src="scripts/nav.js" defer></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+</head>
+<body>
+<input type="checkbox" id="nav-trigger" class="nav-trigger" />
+<label for="nav-trigger" class="navicon-button x">
+  <div class="navicon"></div>
+</label>
+<label for="nav-trigger" class="overlay"></label>
+<nav >
+    <input type="text" id="nav-search" placeholder="Search" />
+    <h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module-imaging_imageStore-Larvitar_Store.html">imaging/imageStore~Larvitar_Store</a></li><li><a href="module-imaging_tools_custom_polygonScissorsTool.html">imaging/tools/custom/polygonScissorsTool</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_imageAnonymization.html">imaging/imageAnonymization</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageAnonymization.html#anonymize#~anonymize">anonymize</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageAnonymization.html#encrypt#~encrypt">encrypt</a></li></ul></li><li><a href="module-imaging_imageColormaps.html">imaging/imageColormaps</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#HSVToRGB#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#addColorMap#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#applyColorMap#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#fillPixelData#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#getColormapsList#getColormapsList">getColormapsList</a></li></ul></li><li><a href="module-imaging_imageContours.html">imaging/imageContours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageContours.html#extractSlicePoints#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageContours.html#populateContoursObject#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageContours.html#parseContours#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_imageIo.html">imaging/imageIo</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#buildData#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#buildDataAsync#~buildDataAsync">buildDataAsync</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#buildHeader#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#getCachedPixelData#~getCachedPixelData">getCachedPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#importNRRDImage#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_imageLayers.html">imaging/imageLayers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#getActiveLayer#getActiveLayer">getActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#setActiveLayer#setActiveLayer">setActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#updateLayer#updateLayer">updateLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#buildLayers#~buildLayers">buildLayers</a></li></ul></li><li><a href="module-imaging_imageLoading.html">imaging/imageLoading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#initializeFileImageLoader#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#initializeImageLoader#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#initializeWebImageLoader#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#registerMultiFrameImageLoader#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#registerNRRDImageLoader#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#registerResliceLoader#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#updateLoadedStack#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#isNewInstance#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_imageParsing.html">imaging/imageParsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#clearImageParsing#clearImageParsing">clearImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseDataSet#parseDataSet">parseDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#readFile#readFile">readFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#readFiles#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseFile#~parseFile">parseFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseFiles#~parseFiles">parseFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseNextFile#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_imagePresets.html">imaging/imagePresets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imagePresets.html#getImagePresets#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imagePresets.html#setImageCustomPreset#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imagePresets.html#setImagePreset#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_imageRendering.html">imaging/imageRendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#clearImageCache#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#disableViewport#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#flipImageHorizontal#flipImageHorizontal">flipImageHorizontal</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#flipImageVertical#flipImageVertical">flipImageVertical</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#getSeriesData#getSeriesData">getSeriesData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#invertImage#invertImage">invertImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#loadAndCacheImages#loadAndCacheImages">loadAndCacheImages</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#renderImage#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#resetViewports#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#resizeViewport#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#rotateImageLeft#rotateImageLeft">rotateImageLeft</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#rotateImageRight#rotateImageRight">rotateImageRight</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#storeViewportData#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#unloadViewport#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#updateImage#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#updateViewportData#updateViewportData">updateViewportData</a></li></ul></li><li><a href="module-imaging_imageReslice.html">imaging/imageReslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageReslice.html#resliceSeries#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_imageStore.html">imaging/imageStore</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_imageStore.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#initLarvitarStore#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#addSeriesIds#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#addViewport#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#deleteViewport#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#disableVuex#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#enableVuex#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#get#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#removeSeriesIds#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#set#~set">set</a></li></ul></li><li><a href="module-imaging_imageTools.html">imaging/imageTools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addContoursTool#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addDiameterTool#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addMaskEditingTool#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addSeedsTool#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addStackStateToElement#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addToolStateSingleSlice#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#clearCornerstoneElements#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#clearMeasurements#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#clearToolStateByName#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#getCurrentMaskData#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#getToolState#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setSegmentationConfig#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#syncToolStack#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#updateDiameterTool#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#updateStackToolState#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_imageUtils.html">imaging/imageUtils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#formatDate#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#formatDateTime#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getCmprMetadata#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getDICOMTag#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getDICOMTagCode#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getDistanceBetweenSlices#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getMaxPixelValue#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getMeanValue#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getMinPixelValue#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getNormalOrientation#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getPixelRepresentation#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getPixelTypedArray#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedIOP#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedIPP#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedMetadata#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedPixeldata#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedSliceLocation#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getSortedStack#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getSortedUIDs#getSortedUIDs">getSortedUIDs</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getTagValue#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getTypedArray#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getTypedArrayFromDataType#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isElement#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isNegativeSign#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isStringVr#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isValidDate#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseAgeTag#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseDateTag#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseDateTimeTag#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseDICOMFileIDTag#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parsePatientNameTag#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseTag#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseTimeTag#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#permuteSignedArrays#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#permuteValues#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#rand#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#randomId#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#sortStackCallback#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#spacingArray#spacingArray">spacingArray</a></li></ul></li><li><a href="module-imaging_strategies_eraseFreehand.html">imaging/strategies/eraseFreehand</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_strategies_eraseFreehand.html#eraseInsideFreehand#.eraseInsideFreehand">eraseInsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_eraseFreehand.html#eraseOutsideFreehand#.eraseOutsideFreehand">eraseOutsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_eraseFreehand.html#eraseFreehand#~eraseFreehand">eraseFreehand</a></li></ul></li><li><a href="module-imaging_strategies_fillFreehand.html">imaging/strategies/fillFreehand</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_strategies_fillFreehand.html#fillInsideFreehand#.fillInsideFreehand">fillInsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_fillFreehand.html#fillOutsideFreehand#.fillOutsideFreehand">fillOutsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_fillFreehand.html#fillFreehand#~fillFreehand">fillFreehand</a></li></ul></li><li><a href="module-imaging_tools_custom_contourTool.html">imaging/tools/custom/contourTool</a></li><li><a href="module-imaging_tools_custom_diameterTool.html">imaging/tools/custom/diameterTool</a></li><li><a href="module-imaging_tools_custom_editMaskTool.html">imaging/tools/custom/editMaskTool</a></li><li><a href="module-imaging_tools_custom_polygonScissorsTool.html">imaging/tools/custom/polygonScissorsTool</a></li><li><a href="module-imaging_tools_custom_thresholdBrushTool.html">imaging/tools/custom/thresholdBrushTool</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_custom_thresholdBrushTool.html#_paint#_paint">_paint</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_custom_thresholdBrushTool.html#getCircleWithThreshold#~getCircleWithThreshold">getCircleWithThreshold</a></li></ul></li><li><a href="module-imaging_tools_default.html">imaging/tools/default</a></li><li><a href="module-imaging_tools_interaction.html">imaging/tools/interaction</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_interaction.html#addMouseKeyHandlers#.addMouseKeyHandlers">addMouseKeyHandlers</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_interaction.html#toggleMouseHandlers#toggleMouseHandlers">toggleMouseHandlers</a></li></ul></li><li><a href="module-imaging_tools_io.html">imaging/tools/io</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_tools_io.html#.exportAnnotations">exportAnnotations</a></li><li data-type='member' style='display: none;'><a href="module-imaging_tools_io.html#.loadAnnotations">loadAnnotations</a></li><li data-type='member' style='display: none;'><a href="module-imaging_tools_io.html#.saveAnnotations">saveAnnotations</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_io.html#generateCSV#.generateCSV">generateCSV</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_io.html#download#~download">download</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_io.html#extractToolInfo#~extractToolInfo">extractToolInfo</a></li></ul></li><li><a href="module-imaging_tools_main.html">imaging/tools/main</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#csToolsUpdateImageIndex#.csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#addTool#~addTool">addTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#csToolsCreateStack#~csToolsCreateStack">csToolsCreateStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#initializeCSTools#~initializeCSTools">initializeCSTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolDisabled#~setToolDisabled">setToolDisabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolsStyle#~setToolsStyle">setToolsStyle</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#tryUpdateImage#~tryUpdateImage">tryUpdateImage</a></li></ul></li><li><a href="module-imaging_tools_polygonSegmentationMixin.html">imaging/tools/polygonSegmentationMixin</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_polygonSegmentationMixin.html#_checkIfDrawing#~_checkIfDrawing">_checkIfDrawing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_polygonSegmentationMixin.html#renderToolData#~renderToolData">renderToolData</a></li></ul></li><li><a href="module-imaging_tools_segmentation.html">imaging/tools/segmentation</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#addSegmentationMask#.addSegmentationMask">addSegmentationMask</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#clearSegmentationState#.clearSegmentationState">clearSegmentationState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#deleteMask#.deleteMask">deleteMask</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#disableBrushTool#.disableBrushTool">disableBrushTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#enableBrushTool#.enableBrushTool">enableBrushTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#forceRender#.forceRender">forceRender</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#getActiveLabelmapBuffer#.getActiveLabelmapBuffer">getActiveLabelmapBuffer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#getLabelColor#.getLabelColor">getLabelColor</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#initSegmentationModule#.initSegmentationModule">initSegmentationModule</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#loadMaskSlice#.loadMaskSlice">loadMaskSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#redoLastStroke#.redoLastStroke">redoLastStroke</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setActiveLabelmap#.setActiveLabelmap">setActiveLabelmap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setActiveLabelOpacity#.setActiveLabelOpacity">setActiveLabelOpacity</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setActiveSegment#.setActiveSegment">setActiveSegment</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setBrushProps#.setBrushProps">setBrushProps</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setInactiveLabelOpacity#.setInactiveLabelOpacity">setInactiveLabelOpacity</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setLabelColor#.setLabelColor">setLabelColor</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setMaskProps#.setMaskProps">setMaskProps</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#toggleContourMode#.toggleContourMode">toggleContourMode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#toggleVisibility#.toggleVisibility">toggleVisibility</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#undoLastStroke#.undoLastStroke">undoLastStroke</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#generateLUT#~generateLUT">generateLUT</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#generateUniformLUT#~generateUniformLUT">generateUniformLUT</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#HSVtoRGB#~HSVtoRGB">HSVtoRGB</a></li></ul></li><li><a href="module-imaging_tools_state.html">imaging/tools/state</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_state.html#restoreToolState#~restoreToolState">restoreToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_state.html#saveToolState#~saveToolState">saveToolState</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageTracker#getLarvitarImageTracker">getLarvitarImageTracker</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesDataFromLarvitarManager#getSeriesDataFromLarvitarManager">getSeriesDataFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#populateLarvitarManager#populateLarvitarManager">populateLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#removeSeriesFromLarvitarManager#removeSeriesFromLarvitarManager">removeSeriesFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#resetLarvitarManager#resetLarvitarManager">resetLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#updateLarvitarManager#updateLarvitarManager">updateLarvitarManager</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId#getDicomImageId">getDicomImageId</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_multiframeLoader.html">loaders/multiframeLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#clearMultiFrameCache#clearMultiFrameCache">clearMultiFrameCache</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#getMultiFrameImageId#getMultiFrameImageId">getMultiFrameImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#setPixelDataType#setPixelDataType">setPixelDataType</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#buildMultiFrameImage#~buildMultiFrameImage">buildMultiFrameImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#loadMultiFrameImage#~loadMultiFrameImage">loadMultiFrameImage</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage#loadNrrdImage">loadNrrdImage</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-monitors_memory.html">monitors/memory</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemoryAllocation#checkMemoryAllocation">checkMemoryAllocation</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemorySupport#checkMemorySupport">checkMemorySupport</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getAvailableMemory#getAvailableMemory">getAvailableMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getMB#getMB">getMB</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getUsedMemory#getUsedMemory">getUsedMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#setAvailableMemory#setAvailableMemory">setAvailableMemory</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#getDefaultToolsByType#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#setDefaultToolsProps#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingDoubleTapClickCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseDoubleClickCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseDownCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseDownCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseDragCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseDragCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseMoveCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseUpCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseUpCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingTouchDragCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingTouchDragCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingTouchStartCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingTouchStartCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_editMouseDragCallback">imaging/tools/custom/contourTool.ContoursTool#_editMouseDragCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_editTouchDragCallback">imaging/tools/custom/contourTool.ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#getSegmentsOnPixelData">getSegmentsOnPixelData</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#setLabelmap3DByFirstImageId">setLabelmap3DByFirstImageId</a></li><li><a href="global.html#setLabelmap3DForElement">setLabelmap3DForElement</a></li></ul>
+</nav>
+<div id="main">
+    <h1 class="page-title">loaders/nrrdLoader.js</h1>
+    <section>
+        <article>
+            <pre class="prettyprint source linenums"><code>/** @module loaders/nrrdLoader
+ *  @desc This file provides functionalities for
+ *        custom NRRD Loader
+ */
+// external libraries
+import cornerstone from "cornerstone-core";
+import cornerstoneWADOImageLoader from "cornerstone-wado-image-loader";
+import { each, clone, range, findKey, filter, pickBy } from "lodash";
+import { v4 as uuidv4 } from "uuid";
+// internal libraries
+import {
+  getNormalOrientation,
+  getPixelRepresentation,
+  getTypedArrayFromDataType
+} from "../imageUtils";
+import {
+  getImageFrame,
+  getLarvitarImageTracker,
+  getLarvitarManager
+} from "./commonLoader";
+// global module variables
+let customImageLoaderCounter = 0;
+/*
+ * This module provides the following functions to be exported:
+ * buildNrrdImage(volume, seriesId, custom_header)
+ * getNrrdImageId(customLoaderName)
+ * loadNrrdImage(imageId)
+ * getImageIdFromSlice(sliceNumber, orientation)
+ * getSliceNumberFromImageId(imageId, orientation)
+ * getNrrdSerieDimensions()
+ */
+/**
+ * Build the data structure for the provided image orientation
+ * @instance
+ * @function buildNrrdImage
+ * @param {Object} volume The volume object
+ * @param {String} seriesId The Id of the series
+ * @param {Object} custom_header A custom header object
+ * @return {Object} volume data
+ */
+export const buildNrrdImage = function (volume, seriesId, custom_header) {
+  let t0 = performance.now();
+  // standard image structure
+  let image = {};
+  let manager = getLarvitarManager();
+  let imageTracker = getLarvitarImageTracker();
+  image.currentImageIdIndex = 0;
+  image.imageIds = [];
+  image.instances = {};
+  image.numberOfImages = 0;
+  image.seriesDescription = "";
+  image.seriesUID = seriesId;
+  let header = {};
+  header["volume"] = {};
+  // need to extract header from nrrd file format
+  // sizes, spaceDirections and spaceOrigin
+  let spacing_x = Math.sqrt(
+    volume.header["space directions"][0][0] *
+      volume.header["space directions"][0][0] +
+      volume.header["space directions"][0][1] *
+        volume.header["space directions"][0][1] +
+      volume.header["space directions"][0][2] *
+        volume.header["space directions"][0][2]
+  );
+  let spacing_y = Math.sqrt(
+    volume.header["space directions"][1][0] *
+      volume.header["space directions"][1][0] +
+      volume.header["space directions"][1][1] *
+        volume.header["space directions"][1][1] +
+      volume.header["space directions"][1][2] *
+        volume.header["space directions"][1][2]
+  );
+  let spacing_z = Math.sqrt(
+    volume.header["space directions"][2][0] *
+      volume.header["space directions"][2][0] +
+      volume.header["space directions"][2][1] *
+        volume.header["space directions"][2][1] +
+      volume.header["space directions"][2][2] *
+        volume.header["space directions"][2][2]
+  );
+  header.volume.rows = volume.header.sizes[1];
+  header.volume.cols = volume.header.sizes[0];
+  header.volume.numberOfSlices = volume.header.sizes[2];
+  header.volume.imagePosition = volume.header["space origin"];
+  header.volume.pixelSpacing = [spacing_x, spacing_y];
+  header.volume.sliceThickness = spacing_z;
+  header.volume.repr =
+    volume.header.type[0].toUpperCase() + volume.header.type.slice(1);
+  header.volume.intercept = custom_header ? custom_header.intercept : null;
+  header.volume.slope = custom_header ? custom_header.slope : null;
+  header.volume.phase = custom_header ? custom_header.phase : null;
+  header.volume.study_description = custom_header
+    ? custom_header.study_description
+    : "";
+  header.volume.series_description = custom_header
+    ? custom_header.series_description
+    : "";
+  header.volume.acquisition_date = custom_header
+    ? custom_header.acquisition_date
+    : "";
+  let rows = volume.header.sizes[1];
+  let cols = volume.header.sizes[0];
+  let frames = volume.header.sizes[2];
+  let iop = volume.header["space directions"][0].concat(
+    volume.header["space directions"][1]
+  );
+  let firstIpp = header.volume.imagePosition;
+  let w = getNormalOrientation(iop);
+  let ps = header.volume.pixelSpacing;
+  let thickness = header.volume.sliceThickness;
+  let intercept = header.volume.intercept;
+  let slope = header.volume.slope;
+  let metadata = {
+    x00280010: rows, // Rows
+    x00280011: cols, // Columns
+    x00200037: iop, // ImageOrientationPatient
+    x00280030: ps, // PixelSpacing
+    x00180050: [thickness][0], // SliceThickness
+    x00281052: intercept ? [intercept] : [0],
+    x00281053: slope ? [slope] : [1],
+    x00200052: header.volume.imageIds
+      ? header[header.volume.imageIds[0]].instanceUID
+      : null,
+    x0008103e: header.volume.imageIds
+      ? header[header.volume.imageIds[0]].seriesDescription
+      : null,
+    x00080060: header.volume.imageIds
+      ? header[header.volume.imageIds[0]].seriesModality
+      : null,
+    x00100010: header.volume.imageIds
+      ? header[header.volume.imageIds[0]].patientName
+      : null,
+    x00280100: header.volume.imageIds
+      ? header[header.volume.imageIds[0]].bitsAllocated
+      : null,
+    x00280103: header.volume.imageIds
+      ? header[header.volume.imageIds[0]].pixelRepresentation
+      : null,
+    repr: header.volume.repr || null
+  };
+  // compute default ww/wl values here to use them also for resliced images
+  let minMax = cornerstoneWADOImageLoader.getMinMax(volume.data);
+  let maxVoi = minMax.max * metadata.x00281053[0] + metadata.x00281052[0];
+  let minVoi = minMax.min * metadata.x00281053[0] + metadata.x00281052[0];
+  let ww = maxVoi - minVoi;
+  let wl = (maxVoi + minVoi) / 2;
+  metadata.x00280106 = minMax.min;
+  metadata.x00280107 = minMax.max;
+  // extract the pixelData of each frame, store the data into the image object
+  each(range(frames), function (sliceIndex) {
+    let sliceSize = rows * cols;
+    let sliceBuffer = volume.data.subarray(
+      sliceSize * sliceIndex,
+      sliceSize * (sliceIndex + 1)
+    );
+    let r = getPixelRepresentation(metadata);
+    let typedArray = getTypedArrayFromDataType(r);
+    let pixelData = new typedArray(sliceBuffer);
+    // assign these values to the metadata of all images
+    metadata.x00281050 = wl;
+    metadata.x00281051 = ww;
+    let imageId = getNrrdImageId("nrrdLoader");
+    imageTracker[imageId] = seriesId;
+    // store file references
+    image.imageIds.push(imageId);
+    image.instances[imageId] = {
+      instanceId: uuidv4(),
+      frame: sliceIndex
+    };
+    let frameMetadata = clone(metadata);
+    frameMetadata.x00200032 = firstIpp.map(function (val, i) {
+      return val + thickness * sliceIndex * w[i];
+    });
+    image.instances[imageId].metadata = frameMetadata;
+    image.instances[imageId].pixelData = pixelData;
+  });
+  let middleSlice = Math.floor(image.imageIds.length / 2);
+  image.currentImageIdIndex = middleSlice;
+  image.numberOfImages = image.imageIds.length;
+  // specify custom loader type and attach original header
+  image.customLoader = "nrrdLoader";
+  header.volume.imageIds = image.imageIds;
+  image.nrrdHeader = header;
+  manager[seriesId] = image;
+  let t1 = performance.now();
+  console.log(`Call to buildNrrdImage took ${t1 - t0} milliseconds.`);
+  return image;
+};
+/**
+ * Get the custom imageId from custom loader
+ * @instance
+ * @function getNrrdImageId
+ * @param {String} customLoaderName The custom loader name
+ * @return {String} the custom image id
+ */
+export const getNrrdImageId = function (customLoaderName) {
+  let imageId = customLoaderName + "://" + customImageLoaderCounter;
+  customImageLoaderCounter++;
+  return imageId;
+};
+/**
+ * Custom cornerstone image loader for nrrd files
+ * @instance
+ * @function loadNrrdImage
+ * @param {String} imageId The image id
+ * @return {Object} custom image object
+ */
+export const loadNrrdImage = function (imageId) {
+  let manager = getLarvitarManager();
+  let imageTracker = getLarvitarImageTracker();
+  let seriesId = imageTracker[imageId];
+  let instance = manager[seriesId].instances[imageId];
+  return createCustomImage(imageId, instance.metadata, instance.pixelData);
+};
+/**
+ * Retrieve imageId for a slice in the given orientation
+ * @instance
+ * @function getImageIdFromSlice
+ * @param {Integer} sliceNumber The image slice number
+ * @param {String} orientation The orientation tag
+ * @param {String} seriesId The series id
+ * @return {String} image id
+ */
+export const getImageIdFromSlice = function (
+  sliceNumber,
+  orientation,
+  seriesId
+) {
+  var prefix = "nrrdLoader://";
+  var serieImageTracker;
+  let imageTracker = getLarvitarImageTracker();
+  if (seriesId) {
+    serieImageTracker = pickBy(imageTracker, image => {
+      return image[0] == seriesId;
+    });
+  } else {
+    serieImageTracker = imageTracker;
+  }
+  var firstImageId = findKey(serieImageTracker, entry => {
+    return entry[1] == orientation;
+  });
+  var imageIndex =
+    parseInt(firstImageId.split("//").pop()) + parseInt(sliceNumber);
+  var imageId = prefix.concat(imageIndex.toString());
+  return imageId;
+};
+/**
+ * Retrieve slice number for a the given orientation
+ * @instance
+ * @function getSliceNumberFromImageId
+ * @param {String} imageId The image slice id
+ * @param {String} orientation The orientation tag
+ * @param {String} seriesId The series id
+ * @return {Integer} The image slice number
+ */
+export const getSliceNumberFromImageId = function (imageId, orientation) {
+  let imageTracker = getLarvitarImageTracker();
+  var firstImageId = findKey(imageTracker, entry => {
+    return entry[1] == orientation;
+  });
+  var imageNumber = imageId.split("//").pop() || imageId;
+  var imageIndex =
+    parseInt(imageNumber) - parseInt(firstImageId.split("//").pop());
+  return imageIndex;
+};
+/**
+ * Get series dimension for each view
+ * @instance
+ * @function getNrrdSerieDimensions
+ * @return {Object} Series dimension for each view
+ */
+export const getNrrdSerieDimensions = function () {
+  let imageTracker = getLarvitarImageTracker();
+  var dim_axial = filter(imageTracker, img => {
+    return img[1] == "axial";
+  });
+  var dim_coronal = filter(imageTracker, img => {
+    return img[1] == "coronal";
+  });
+  var dim_sagittal = filter(imageTracker, img => {
+    return img[1] == "sagittal";
+  });
+  return {
+    axial: [dim_coronal.length, dim_sagittal.length, dim_axial.length],
+    coronal: [dim_sagittal.length, dim_axial.length, dim_coronal.length],
+    sagittal: [dim_coronal.length, dim_axial.length, dim_sagittal.length]
+  };
+};
+/* Internal functions */
+/**
+ * Create the custom image object for conrnestone from nrrd file
+ * @instance
+ * @function createCustomImage
+ * @param {String} imageId The series id
+ * @param {Object} metadata The metadata object
+ * @param {Object} pixelData The pixelData object
+ * @param {Object} dataSet The dataset
+ * @return {String} The image id
+ */
+let createCustomImage = function (imageId, metadata, pixelData, dataSet) {
+  let canvas = window.document.createElement("canvas");
+  let lastImageIdDrawn = "";
+  let imageFrame = getImageFrame(metadata, dataSet);
+  // This function uses the pixelData received as argument without manipulating
+  // them: if the image is compressed, the decompress function should be called
+  // before creating the custom image object (like the multiframe case).
+  imageFrame.pixelData = pixelData;
+  let pixelSpacing = metadata.x00280030;
+  let rescaleIntercept = metadata.x00281052;
+  let rescaleSlope = metadata.x00281053;
+  let windowCenter = metadata.x00281050;
+  let windowWidth = metadata.x00281051;
+  function getSizeInBytes() {
+    let bytesPerPixel = Math.round(imageFrame.bitsAllocated / 8);
+    return (
+      imageFrame.rows *
+      imageFrame.columns *
+      bytesPerPixel *
+      imageFrame.samplesPerPixel
+    );
+  }
+  let image = {
+    imageId: imageId,
+    color: cornerstoneWADOImageLoader.isColorImage(
+      imageFrame.photometricInterpretation
+    ),
+    columnPixelSpacing: pixelSpacing ? pixelSpacing[1] : undefined,
+    columns: imageFrame.columns,
+    height: imageFrame.rows,
+    intercept: rescaleIntercept ? rescaleIntercept[0] : 0,
+    invert: imageFrame.photometricInterpretation === "MONOCHROME1",
+    minPixelValue: imageFrame.smallestPixelValue,
+    maxPixelValue: imageFrame.largestPixelValue,
+    render: undefined, // set below
+    rowPixelSpacing: pixelSpacing ? pixelSpacing[0] : undefined,
+    rows: imageFrame.rows,
+    sizeInBytes: getSizeInBytes(),
+    slope: rescaleSlope ? rescaleSlope[0] : 1,
+    width: imageFrame.columns,
+    windowCenter: windowCenter ? windowCenter[0] : undefined,
+    windowWidth: windowWidth ? windowWidth[0] : undefined,
+    decodeTimeInMS: undefined,
+    webWorkerTimeInMS: undefined
+  };
+  // add function to return pixel data
+  image.getPixelData = function () {
+    return imageFrame.pixelData;
+  };
+  // convert color space
+  if (image.color) {
+    // setup the canvas context
+    canvas.height = imageFrame.rows;
+    canvas.width = imageFrame.columns;
+    let context = canvas.getContext("2d");
+    let imageData = context.createImageData(
+      imageFrame.columns,
+      imageFrame.rows
+    );
+    cornerstoneWADOImageLoader.convertColorSpace(imageFrame, imageData);
+    imageFrame.imageData = imageData;
+    imageFrame.pixelData = imageData.data;
+  }
+  // Setup the renderer
+  if (image.color) {
+    image.render = cornerstone.renderColorImage;
+    image.getCanvas = function () {
+      if (lastImageIdDrawn === imageId) {
+        return canvas;
+      }
+      canvas.height = image.rows;
+      canvas.width = image.columns;
+      let context = canvas.getContext("2d");
+      context.putImageData(imageFrame.imageData, 0, 0);
+      lastImageIdDrawn = imageId;
+      return canvas;
+    };
+  } else {
+    image.render = undefined; // will be set at need in cornerstone render pipeline, see drawImageSync.js (line 44)
+  }
+  // calculate min/max if not supplied
+  if (image.minPixelValue === undefined || image.maxPixelValue === undefined) {
+    let minMax = cornerstoneWADOImageLoader.getMinMax(pixelData);
+    image.minPixelValue = minMax.min;
+    image.maxPixelValue = minMax.max;
+  }
+  // set the ww/wc to cover the dynamic range of the image if no values are supplied
+  if (image.windowCenter === undefined || image.windowWidth === undefined) {
+    if (image.color) {
+      image.windowWidth = 255;
+      image.windowCenter = 128;
+    } else {
+      let maxVoi = image.maxPixelValue * image.slope + image.intercept;
+      let minVoi = image.minPixelValue * image.slope + image.intercept;
+      image.windowWidth = maxVoi - minVoi;
+      image.windowCenter = (maxVoi + minVoi) / 2;
+    }
+  }
+  // Custom images does not have the "data" attribute becaouse their dataset is
+  // not available. The "metadata" attribute is used by the storeImageData
+  // function to store custom image pixelData and metadata.
+  image.metadata = metadata;
+  let promise = new Promise(function (resolve) {
+    resolve(image);
+  });
+  // Return an object containing the Promise to cornerstone so it can setup callbacks to be
+  // invoked asynchronously for the success/resolve and failure/reject scenarios.
+  return {
+    promise
+  };
+};
+</code></pre>
+        </article>
+    </section>
+</div>
+<br class="clear">
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