npm - larvitar - Versions diffs - 0.18.2 → 1.2.0 - Mend

larvitar 0.18.2 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (229) hide show

package/.github/workflows/deploy.yml +3 -12
package/MIGRATION.md +25 -0
package/README.md +28 -27
package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +171 -0
package/docs/documentation/Tools.Annotation.ContoursTool.html +218 -0
package/docs/documentation/Tools.Annotation.DiameterTool.html +219 -0
package/docs/documentation/Tools.Annotation.SeedsTool.html +214 -0
package/docs/documentation/Tools.Brush.BrushTool.html +218 -0
package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +218 -0
package/docs/documentation/Tools.PolylineScissorsTool.html +218 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +978 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +1049 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
package/docs/documentation/global.html +1303 -0
package/docs/documentation/imageAnonymization.js.html +245 -0
package/docs/documentation/imageColormaps.js.html +283 -0
package/docs/documentation/imageContours.js.html +278 -0
package/docs/documentation/imageIo.js.html +291 -0
package/docs/documentation/imageLayers.js.html +188 -0
package/docs/documentation/imageLoading.js.html +297 -0
package/docs/documentation/imageParsing.js.html +385 -0
package/docs/documentation/imagePresets.js.html +207 -0
package/docs/documentation/imageRendering.js.html +849 -0
package/docs/documentation/imageReslice.js.html +162 -0
package/docs/documentation/imageStore.js.html +360 -0
package/docs/documentation/imageTools.js.html +784 -0
package/docs/documentation/imageUtils.js.html +1609 -0
package/docs/documentation/image_colormaps.js.html +283 -0
package/docs/documentation/image_contours.js.html +279 -0
package/docs/documentation/image_io.js.html +288 -0
package/docs/documentation/image_layers.js.html +188 -0
package/docs/documentation/image_loading.js.html +294 -0
package/docs/documentation/image_parsing.js.html +391 -0
package/docs/documentation/image_presets.js.html +207 -0
package/docs/documentation/image_rendering.js.html +845 -0
package/docs/documentation/image_reslice.js.html +164 -0
package/docs/documentation/image_store.js.html +359 -0
package/docs/documentation/image_tools.js.html +792 -0
package/docs/documentation/image_utils.js.html +1609 -0
package/docs/documentation/index.html +175 -0
package/docs/documentation/loaders_commonLoader.js.html +306 -0
package/docs/documentation/loaders_dicomLoader.js.html +130 -0
package/docs/documentation/loaders_fileLoader.js.html +155 -0
package/docs/documentation/loaders_multiframeLoader.js.html +443 -0
package/docs/documentation/loaders_niftiLoader.js.html +150 -0
package/docs/documentation/loaders_nrrdLoader.js.html +545 -0
package/docs/documentation/loaders_resliceLoader.js.html +258 -0
package/docs/documentation/module-imaging_contours.html +954 -0
package/docs/documentation/module-imaging_imageAnonymization.html +544 -0
package/docs/documentation/module-imaging_imageColormaps.html +1012 -0
package/docs/documentation/module-imaging_imageContours.html +954 -0
package/docs/documentation/module-imaging_imageIo.html +1057 -0
package/docs/documentation/module-imaging_imageLayers.html +904 -0
package/docs/documentation/module-imaging_imageLoading.html +1301 -0
package/docs/documentation/module-imaging_imageParsing.html +1356 -0
package/docs/documentation/module-imaging_imagePresets.html +679 -0
package/docs/documentation/module-imaging_imageRendering.html +3223 -0
package/docs/documentation/module-imaging_imageReslice.html +413 -0
package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +284 -0
package/docs/documentation/module-imaging_imageStore.html +1560 -0
package/docs/documentation/module-imaging_imageTools.html +3617 -0
package/docs/documentation/module-imaging_imageUtils.html +7253 -0
package/docs/documentation/module-imaging_io.html +1057 -0
package/docs/documentation/module-imaging_layers.html +904 -0
package/docs/documentation/module-imaging_loading.html +1301 -0
package/docs/documentation/module-imaging_parsing.html +1375 -0
package/docs/documentation/module-imaging_presets.html +679 -0
package/docs/documentation/module-imaging_rendering.html +8094 -0
package/docs/documentation/module-imaging_reslice.html +411 -0
package/docs/documentation/module-imaging_store-Larvitar_Store.html +284 -0
package/docs/documentation/module-imaging_store.html +1537 -0
package/docs/documentation/module-imaging_strategies_eraseFreehand.html +708 -0
package/docs/documentation/module-imaging_strategies_fillFreehand.html +708 -0
package/docs/documentation/module-imaging_tools.html +3617 -0
package/docs/documentation/module-imaging_tools_custom_contourTool.html +207 -0
package/docs/documentation/module-imaging_tools_custom_diameterTool.html +205 -0
package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +205 -0
package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +203 -0
package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +684 -0
package/docs/documentation/module-imaging_tools_default.html +205 -0
package/docs/documentation/module-imaging_tools_interaction.html +530 -0
package/docs/documentation/module-imaging_tools_io.html +832 -0
package/docs/documentation/module-imaging_tools_main.html +2028 -0
package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +567 -0
package/docs/documentation/module-imaging_tools_segmentation.html +3586 -0
package/docs/documentation/module-imaging_tools_state.html +494 -0
package/docs/documentation/module-imaging_utils.html +7253 -0
package/docs/documentation/module-loaders_commonLoader.html +1313 -0
package/docs/documentation/module-loaders_dicomLoader.html +522 -0
package/docs/documentation/module-loaders_fileLoader.html +593 -0
package/docs/documentation/module-loaders_multiframeLoader.html +1169 -0
package/docs/documentation/module-loaders_niftiLoader.html +565 -0
package/docs/documentation/module-loaders_nrrdLoader.html +1459 -0
package/docs/documentation/module-loaders_resliceLoader.html +590 -0
package/docs/documentation/module-monitors_memory.html +980 -0
package/docs/documentation/module-tools_default.html +740 -0
package/docs/documentation/module.exports_module.exports.html +203 -0
package/docs/documentation/monitors_memory.js.html +189 -0
package/docs/documentation/parsers_nrrd.js.html +569 -0
package/docs/documentation/scripts/collapse.js +20 -0
package/docs/documentation/scripts/linenumber.js +25 -0
package/docs/documentation/scripts/nav.js +12 -0
package/docs/documentation/scripts/polyfill.js +4 -0
package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +202 -0
package/docs/documentation/scripts/prettify/lang-css.js +2 -0
package/docs/documentation/scripts/prettify/prettify.js +28 -0
package/docs/documentation/scripts/search.js +83 -0
package/docs/documentation/styles/jsdoc.css +765 -0
package/docs/documentation/styles/prettify.css +80 -0
package/docs/documentation/tools_contourTool.js.html +1963 -0
package/docs/documentation/tools_custom_contourTool.js.html +1968 -0
package/docs/documentation/tools_custom_diameterTool.js.html +225 -0
package/docs/documentation/tools_custom_editMaskTool.js.html +225 -0
package/docs/documentation/tools_custom_polylineScissorsTool.js.html +143 -0
package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +245 -0
package/docs/documentation/tools_default.js.html +576 -0
package/docs/documentation/tools_diameterTool.js.html +219 -0
package/docs/documentation/tools_editMaskTool.js.html +219 -0
package/docs/documentation/tools_interaction.js.html +258 -0
package/docs/documentation/tools_io.js.html +297 -0
package/docs/documentation/tools_main.js.html +443 -0
package/docs/documentation/tools_polygonSegmentationMixin.js.html +329 -0
package/docs/documentation/tools_polylineScissorsTool.js.html +136 -0
package/docs/documentation/tools_seedTool.js.html +423 -0
package/docs/documentation/tools_segmentation.js.html +558 -0
package/docs/documentation/tools_state.js.html +163 -0
package/docs/documentation/tools_strategies_eraseFreehand.js.html +160 -0
package/docs/documentation/tools_strategies_fillFreehand.js.html +163 -0
package/docs/documentation/tools_thresholdsBrushTool.js.html +239 -0
package/docs/documentation/tools_tools.default.js.html +569 -0
package/docs/documentation/tools_tools.interaction.js.html +251 -0
package/docs/documentation/tools_tools.io.js.html +288 -0
package/docs/documentation/tools_tools.main.js.html +442 -0
package/docs/documentation/tools_tools.segmentation.js.html +445 -0
package/docs/documentation/tools_tools.state.js.html +157 -0
package/docs/examples/base.html +170 -0
package/docs/examples/colorMaps.html +181 -0
package/docs/examples/defaultTools.html +246 -0
package/docs/examples/demo/anon1 +0 -0
package/docs/examples/demo/anon10 +0 -0
package/docs/examples/demo/anon11 +0 -0
package/docs/examples/demo/anon12 +0 -0
package/docs/examples/demo/anon13 +0 -0
package/docs/examples/demo/anon14 +0 -0
package/docs/examples/demo/anon15 +0 -0
package/docs/examples/demo/anon16 +0 -0
package/docs/examples/demo/anon17 +0 -0
package/docs/examples/demo/anon18 +0 -0
package/docs/examples/demo/anon19 +0 -0
package/docs/examples/demo/anon2 +0 -0
package/docs/examples/demo/anon20 +0 -0
package/docs/examples/demo/anon21 +0 -0
package/docs/examples/demo/anon22 +0 -0
package/docs/examples/demo/anon23 +0 -0
package/docs/examples/demo/anon24 +0 -0
package/docs/examples/demo/anon3 +0 -0
package/docs/examples/demo/anon4 +0 -0
package/docs/examples/demo/anon5 +0 -0
package/docs/examples/demo/anon6 +0 -0
package/docs/examples/demo/anon7 +0 -0
package/docs/examples/demo/anon8 +0 -0
package/docs/examples/demo/anon9 +0 -0
package/docs/examples/demo/example.nrrd +0 -0
package/docs/examples/demo/segmentation.nrrd +0 -0
package/docs/examples/demo/xa_integris.dcm +0 -0
package/docs/examples/index.html +129 -0
package/docs/examples/larvitar.js +108623 -0
package/docs/examples/layers.html +250 -0
package/docs/examples/masks.html +273 -0
package/docs/examples/multiframe.html +200 -0
package/docs/examples/nrrd.html +96 -0
package/docs/examples/reslice.html +174 -0
package/docs/index.html +92 -0
package/imaging/dataDictionary.json +21865 -21865
package/imaging/imageAnonymization.js +161 -0
package/imaging/{image_colormaps.js → imageColormaps.js} +2 -2
package/imaging/{image_contours.js → imageContours.js} +1 -2
package/imaging/{image_io.js → imageIo.js} +18 -15
package/imaging/{image_layers.js → imageLayers.js} +2 -2
package/imaging/{image_loading.js → imageLoading.js} +9 -6
package/imaging/imageParsing.js +301 -0
package/imaging/{image_presets.js → imagePresets.js} +2 -2
package/imaging/{image_rendering.js → imageRendering.js} +36 -32
package/imaging/imageReslice.js +78 -0
package/imaging/{image_store.js → imageStore.js} +8 -7
package/imaging/{image_tools.js → imageTools.js} +15 -23
package/imaging/{image_utils.js → imageUtils.js} +1 -1
package/imaging/loaders/commonLoader.js +1 -1
package/imaging/loaders/dicomLoader.js +1 -1
package/imaging/loaders/fileLoader.js +2 -2
package/imaging/loaders/multiframeLoader.js +6 -2
package/imaging/loaders/nrrdLoader.js +11 -7
package/imaging/tools/{contourTool.js → custom/contourTool.js} +25 -20
package/imaging/tools/{diameterTool.js → custom/diameterTool.js} +9 -3
package/imaging/tools/{editMaskTool.js → custom/editMaskTool.js} +7 -1
package/imaging/tools/{polylineScissorsTool.js → custom/polylineScissorsTool.js} +12 -5
package/imaging/tools/{seedTool.js → custom/seedTool.js} +3 -3
package/imaging/tools/{thresholdsBrushTool.js → custom/thresholdsBrushTool.js} +7 -1
package/imaging/tools/{tools.default.js → default.js} +10 -3
package/imaging/tools/{tools.interaction.js → interaction.js} +13 -6
package/imaging/tools/{tools.io.js → io.js} +15 -6
package/imaging/tools/{tools.main.js → main.js} +16 -14
package/imaging/tools/polygonSegmentationMixin.js +8 -4
package/imaging/tools/{tools.segmentation.js → segmentation.js} +171 -58
package/imaging/tools/segmentations.md +38 -0
package/imaging/tools/setLabelMap3D.js +248 -0
package/imaging/tools/{tools.state.js → state.js} +7 -1
package/imaging/tools/strategies/eraseFreehand.js +8 -9
package/imaging/tools/strategies/fillFreehand.js +8 -9
package/index.js +44 -39
package/modules/vuex/larvitar.js +13 -3
package/package.json +13 -10
package/imaging/image_parsing.js +0 -307
package/imaging/image_reslice.js +0 -80

package/docs/documentation/image_parsing.js.html ADDED Viewed

@@ -0,0 +1,391 @@
+<!DOCTYPE html>
+<html lang="en">
+<head>
+    <meta charset="utf-8">
+    <title>image_parsing.js - Larvitar</title>
+    <meta name="description" content="Dicom Image Toolkit for CornestoneJS" />
+        <meta name="keywords" content="imaging, dataviz, medical, cornerstone" />
+        <meta name="keyword" content="imaging, dataviz, medical, cornerstone" />
+    <script src="scripts/prettify/prettify.js"></script>
+    <script src="scripts/prettify/lang-css.js"></script>
+    <!--[if lt IE 9]>
+      <script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
+    <![endif]-->
+    <link type="text/css" rel="stylesheet" href="styles/prettify.css">
+    <link type="text/css" rel="stylesheet" href="styles/jsdoc.css">
+    <script src="scripts/nav.js" defer></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+</head>
+<body>
+<input type="checkbox" id="nav-trigger" class="nav-trigger" />
+<label for="nav-trigger" class="navicon-button x">
+  <div class="navicon"></div>
+</label>
+<label for="nav-trigger" class="overlay"></label>
+<nav >
+    <input type="text" id="nav-search" placeholder="Search" />
+    <h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module.exports_module.exports.html">module.exports#module.exports</a></li><li><a href="module-imaging_store-Larvitar_Store.html">imaging/store~Larvitar_Store</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_anonymization.html">imaging/anonymization</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#anonymize#~anonymize">anonymize</a></li><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#encrypt#~encrypt">encrypt</a></li></ul></li><li><a href="module-imaging_contours.html">imaging/contours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#extractSlicePoints#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#populateContoursObject#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#parseContours#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_io.html">imaging/io</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildData#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildDataAsync#~buildDataAsync">buildDataAsync</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildHeader#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#getCachedPixelData#~getCachedPixelData">getCachedPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#importNRRDImage#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_layers.html">imaging/layers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#getActiveLayer#getActiveLayer">getActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#setActiveLayer#setActiveLayer">setActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#updateLayer#updateLayer">updateLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#buildLayers#~buildLayers">buildLayers</a></li></ul></li><li><a href="module-imaging_loading.html">imaging/loading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeFileImageLoader#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeImageLoader#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeWebImageLoader#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerMultiFrameImageLoader#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerNRRDImageLoader#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerResliceLoader#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#updateLoadedStack#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#isNewInstance#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_parsing.html">imaging/parsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#clearImageParsing#clearImageParsing">clearImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpDataSet#dumpDataSet">dumpDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFile#readFile">readFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFiles#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFile#~dumpFile">dumpFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFiles#~dumpFiles">dumpFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#parseNextFile#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_presets.html">imaging/presets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#getImagePresets#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImageCustomPreset#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImagePreset#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_rendering.html">imaging/rendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#HSVToRGB#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#addColorMap#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#applyColorMap#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#clearImageCache#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#disableViewport#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#fillPixelData#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageHorizontal#flipImageHorizontal">flipImageHorizontal</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageVertical#flipImageVertical">flipImageVertical</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getColormapsList#getColormapsList">getColormapsList</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getSeriesData#getSeriesData">getSeriesData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#invertImage#invertImage">invertImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#loadAndCacheImages#loadAndCacheImages">loadAndCacheImages</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderImage#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resetViewports#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resizeViewport#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageLeft#rotateImageLeft">rotateImageLeft</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageRight#rotateImageRight">rotateImageRight</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#storeViewportData#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#unloadViewport#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateImage#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateViewportData#updateViewportData">updateViewportData</a></li></ul></li><li></li><li><a href="module-imaging_reslice.html">imaging/reslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_reslice.html#resliceSeries#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_store.html">imaging/store</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_store.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_store.html#initLarvitarStore#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addSeriesIds#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addViewport#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#deleteViewport#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#disableVuex#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#enableVuex#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#get#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#removeSeriesIds#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#set#~set">set</a></li></ul></li><li><a href="module-imaging_tools.html">imaging/tools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addContoursTool#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDiameterTool#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addMaskEditingTool#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addSeedsTool#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addStackStateToElement#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addToolStateSingleSlice#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearCornerstoneElements#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearMeasurements#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearToolStateByName#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getCurrentMaskData#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getToolState#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setSegmentationConfig#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#syncToolStack#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateDiameterTool#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateStackToolState#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_utils.html">imaging/utils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDate#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDateTime#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getCmprMetadata#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTag#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTagCode#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDistanceBetweenSlices#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMaxPixelValue#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMeanValue#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMinPixelValue#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getNormalOrientation#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelRepresentation#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelTypedArray#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIOP#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIPP#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedMetadata#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedPixeldata#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedSliceLocation#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedStack#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedUIDs#getSortedUIDs">getSortedUIDs</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTagValue#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArray#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArrayFromDataType#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isElement#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isNegativeSign#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isStringVr#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isValidDate#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseAgeTag#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTag#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTimeTag#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDICOMFileIDTag#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parsePatientNameTag#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTag#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTimeTag#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteSignedArrays#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteValues#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#rand#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#randomId#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#sortStackCallback#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#spacingArray#spacingArray">spacingArray</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageTracker#getLarvitarImageTracker">getLarvitarImageTracker</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesDataFromLarvitarManager#getSeriesDataFromLarvitarManager">getSeriesDataFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#populateLarvitarManager#populateLarvitarManager">populateLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#removeSeriesFromLarvitarManager#removeSeriesFromLarvitarManager">removeSeriesFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#resetLarvitarManager#resetLarvitarManager">resetLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#updateLarvitarManager#updateLarvitarManager">updateLarvitarManager</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId#getDicomImageId">getDicomImageId</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage#loadNrrdImage">loadNrrdImage</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-monitors_memory.html">monitors/memory</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemoryAllocation#checkMemoryAllocation">checkMemoryAllocation</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemorySupport#checkMemorySupport">checkMemorySupport</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getAvailableMemory#getAvailableMemory">getAvailableMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getMB#getMB">getMB</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getUsedMemory#getUsedMemory">getUsedMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#setAvailableMemory#setAvailableMemory">setAvailableMemory</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#getDefaultToolsByType#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#setDefaultToolsProps#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="ContoursTool.html#event:_drawingDoubleTapClickCallback">ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDoubleClickCallback">ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDownCallback">ContoursTool#_drawingMouseDownCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDragCallback">ContoursTool#_drawingMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseMoveCallback">ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseUpCallback">ContoursTool#_drawingMouseUpCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchDragCallback">ContoursTool#_drawingTouchDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchStartCallback">ContoursTool#_drawingTouchStartCallback</a></li><li><a href="ContoursTool.html#event:_editMouseDragCallback">ContoursTool#_editMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_editTouchDragCallback">ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#_checkIfDrawing">_checkIfDrawing</a></li><li><a href="global.html#_paint">_paint</a></li><li><a href="global.html#addDefaultTools">addDefaultTools</a></li><li><a href="global.html#addMouseKeyHandlers">addMouseKeyHandlers</a></li><li><a href="global.html#addSegmentationMask">addSegmentationMask</a></li><li><a href="global.html#addTool">addTool</a></li><li><a href="global.html#buildMultiFrameImage">buildMultiFrameImage</a></li><li><a href="global.html">clearMultiFrameCache</a></li><li><a href="global.html#clearSegmentationState">clearSegmentationState</a></li><li><a href="global.html#config">config</a></li><li><a href="global.html">createCustomImage</a></li><li><a href="global.html#csToolsCreateStack">csToolsCreateStack</a></li><li><a href="global.html#csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li><a href="global.html#deleteMask">deleteMask</a></li><li><a href="global.html#disableBrushTool">disableBrushTool</a></li><li><a href="global.html#download">download</a></li><li><a href="global.html#enableBrushTool">enableBrushTool</a></li><li><a href="global.html#eraseFreehand">eraseFreehand</a></li><li><a href="global.html#eraseInsideFreehand">eraseInsideFreehand</a></li><li><a href="global.html#eraseOutsideFreehand">eraseOutsideFreehand</a></li><li><a href="global.html#exportAnnotations">exportAnnotations</a></li><li><a href="global.html#extractToolInfo">extractToolInfo</a></li><li><a href="global.html#fillFreehand">fillFreehand</a></li><li><a href="global.html#fillInsideFreehand">fillInsideFreehand</a></li><li><a href="global.html#fillOutsideFreehand">fillOutsideFreehand</a></li><li><a href="global.html#forceRender">forceRender</a></li><li><a href="global.html#generateCSV">generateCSV</a></li><li><a href="global.html#generateLUT">generateLUT</a></li><li><a href="global.html#generateUniformLUT">generateUniformLUT</a></li><li><a href="global.html#getActiveLabelmapBuffer">getActiveLabelmapBuffer</a></li><li><a href="global.html#getCircleWithThreshold">getCircleWithThreshold</a></li><li><a href="global.html">getMultiFrameImageId</a></li><li><a href="global.html#HSVtoRGB">HSVtoRGB</a></li><li><a href="global.html#initializeCSTools">initializeCSTools</a></li><li><a href="global.html#initSegmentationModule">initSegmentationModule</a></li><li><a href="global.html#isDrawing">isDrawing</a></li><li><a href="global.html#isToolMissing">isToolMissing</a></li><li><a href="global.html#loadAnnotations">loadAnnotations</a></li><li><a href="global.html#loadMultiFrameImage">loadMultiFrameImage</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#redoLastStroke">redoLastStroke</a></li><li><a href="global.html#renderToolData">renderToolData</a></li><li><a href="global.html#restoreToolState">restoreToolState</a></li><li><a href="global.html#saveAnnotations">saveAnnotations</a></li><li><a href="global.html#saveToolState">saveToolState</a></li><li><a href="global.html#setActiveLabelmap">setActiveLabelmap</a></li><li><a href="global.html#setActiveLabelOpacity">setActiveLabelOpacity</a></li><li><a href="global.html#setActiveSegment">setActiveSegment</a></li><li><a href="global.html#setBrushProps">setBrushProps</a></li><li><a href="global.html#setInactiveLabelOpacity">setInactiveLabelOpacity</a></li><li><a href="global.html#setMaskProps">setMaskProps</a></li><li><a href="global.html">setPixelDataType</a></li><li><a href="global.html#setToolActive">setToolActive</a></li><li><a href="global.html#setToolDisabled">setToolDisabled</a></li><li><a href="global.html#setToolEnabled">setToolEnabled</a></li><li><a href="global.html#setToolPassive">setToolPassive</a></li><li><a href="global.html#setToolsStyle">setToolsStyle</a></li><li><a href="global.html#toggleContourMode">toggleContourMode</a></li><li><a href="global.html">toggleMouseHandlers</a></li><li><a href="global.html#tryUpdateImage">tryUpdateImage</a></li><li><a href="global.html#undoLastStroke">undoLastStroke</a></li></ul>
+</nav>
+<div id="main">
+    <h1 class="page-title">image_parsing.js</h1>
+    <section>
+        <article>
+            <pre class="prettyprint source linenums"><code>/** @module imaging/parsing
+ *  @desc  This file provides functionalities for parsing DICOM image files
+ */
+// external libraries
+import { parseDicom } from "dicom-parser";
+import { forEach, each, has, pick } from "lodash";
+// internal libraries
+import { getPixelRepresentation, randomId, parseTag } from "./image_utils.js";
+import { updateLoadedStack } from "./image_loading.js";
+import { checkMemoryAllocation } from "./monitors/memory.js";
+// global module variables
+var parsingQueueFlag = null; // flag to handle the queue
+var t0 = null; // t0 variable for timing debugging purpose
+/*
+ * This module provides the following functions to be exported:
+ * readFiles(fileList, callback)
+ * readFile(file, callback)
+ * dumpDataSet(dataSet, metadata, customFilter)
+ * clearImageParsing(seriesStack)
+ */
+/**
+ * Reset series stack object and its internal data
+ * @instance
+ * @function clearImageParsing
+ * @param {Object} seriesStack - Parsed series stack object
+ */
+export const clearImageParsing = function (seriesStack) {
+  each(seriesStack, function (stack) {
+    each(stack.instances, function (instance) {
+      if (instance.dataSet) {
+        instance.dataSet.byteArray = null;
+      }
+      instance.dataSet = null;
+      instance.file = null;
+      instance.metadata = null;
+    });
+  });
+  seriesStack = null;
+};
+/**
+ * Read dicom files and return allSeriesStack object
+ * @instance
+ * @function readFiles
+ * @param {Array} entries - List of file objects
+ * @param {Function} callback - Will receive (imageObject, errorString) as args
+ */
+export const readFiles = function (entries, callback) {
+  let allSeriesStack = {};
+  let parsingQueue = [];
+  dumpFiles(entries, parsingQueue, allSeriesStack, callback);
+};
+/**
+ * Read a single dicom file and return parsed object
+ * @instance
+ * @function readFile
+ * @param {File} entry - File object
+ * @param {Function} callback - Will receive (imageObject, errorString) as args
+ */
+export const readFile = function (entry, callback) {
+  dumpFile(entry, callback);
+};
+/* Internal module functions */
+/**
+ * Dump metadata from dicom parser dataSet object
+ * @instance
+ * @function dumpDataSet
+ * @param {Object} dataSet - dicom parser dataSet object
+ * @param {Array} metadata - Initialized metadata object
+ * @param {Array} customFilter - Optional filter: {tags:[], frameId: 0}
+ */
+// This function iterates through dataSet recursively and adds new HTML strings
+// to the output array passed into it
+export const dumpDataSet = function (dataSet, metadata, customFilter) {
+  // customFilter= {tags:[], frameId:xxx}
+  // the dataSet.elements object contains properties for each element parsed.  The name of the property
+  // is based on the elements tag and looks like 'xGGGGEEEE' where GGGG is the group number and EEEE is the
+  // element number both with lowercase hexadecimal letters.  For example, the Series Description DICOM element 0008,103E would
+  // be named 'x0008103e'.  Here we iterate over each property (element) so we can build a string describing its
+  // contents to add to the output array
+  try {
+    let elements =
+      customFilter &amp;&amp; has(customFilter, "tags")
+        ? pick(dataSet.elements, customFilter.tags)
+        : dataSet.elements;
+    for (let propertyName in elements) {
+      let element = elements[propertyName];
+      // Here we check for Sequence items and iterate over them if present.  items will not be set in the
+      // element object for elements that don't have SQ VR type.  Note that implicit little endian
+      // sequences will are currently not parsed.
+      if (element.items) {
+        // each item contains its own data set so we iterate over the items
+        // and recursively call this function
+        if (customFilter &amp;&amp; has(customFilter, "frameId")) {
+          let item = element.items[customFilter.frameId];
+          dumpDataSet(item.dataSet, metadata);
+        } else {
+          element.items.forEach(function (item) {
+            dumpDataSet(item.dataSet, metadata);
+          });
+        }
+      } else {
+        let tagValue = parseTag(dataSet, propertyName, element);
+        metadata[propertyName] = tagValue;
+      }
+    }
+  } catch (err) {
+    console.log(err);
+  }
+};
+/**
+ * Manage the parsing process waiting for the parsed object before proceeding with the next parse request
+ * @inner
+ * @function parseNextFile
+ * @param {Array} parsingQueue - Array of queued files to be parsed
+ * @param {Object} allSeriesStack - Series stack object to be populated
+ * @param {Function} callback - Passed through
+ */
+let parseNextFile = function (parsingQueue, allSeriesStack, callback) {
+  // initialize t0 on first file of the queue
+  if (
+    Object.keys(allSeriesStack).length === 0 &amp;&amp;
+    allSeriesStack.constructor === Object
+  ) {
+    t0 = performance.now();
+  }
+  if (!parsingQueueFlag || parsingQueue.length === 0) {
+    if (parsingQueue.length === 0) {
+      let t1 = performance.now();
+      console.log(`Call to readFiles took ${t1 - t0} milliseconds.`);
+      parsingQueueFlag = null;
+      callback(allSeriesStack);
+    }
+    return;
+  }
+  parsingQueueFlag = false;
+  // remove and return first item from queue
+  let file = parsingQueue.shift();
+  // Check if there is enough memory to dump the file
+  if (checkMemoryAllocation(file.size) === false) {
+    // do not parse the file and stop parsing
+    clearImageParsing(allSeriesStack);
+    let t1 = performance.now();
+    console.log(`Call to readFiles took ${t1 - t0} milliseconds.`);
+    parsingQueueFlag = null;
+    file = null;
+    callback(allSeriesStack, "Available memory is not enough");
+  } else {
+    // parse the file and wait for results
+    dumpFile(file, function (seriesData, err) {
+      if (parsingQueueFlag === null) {
+        console.log("parsingQueueFlag is null");
+        // parsing process has been stopped, but there could be a
+        // dumpFile callback still working: prevent actions
+        return;
+      }
+      if (err) {
+        console.warn(err);
+        parsingQueueFlag = true;
+        parseNextFile(parsingQueue, allSeriesStack, callback);
+      } else {
+        // add file to cornerstoneWADOImageLoader file manager
+        updateLoadedStack(seriesData, allSeriesStack);
+        // proceed with the next file to parse
+        parsingQueueFlag = true;
+        parseNextFile(parsingQueue, allSeriesStack, callback);
+      }
+      file = null;
+      seriesData = null;
+    });
+  }
+};
+/**
+ * Push files in queue and start parsing next file
+ * @inner
+ * @function dumpFiles
+ * @param {Array} fileList - Array of file objects
+ * @param {Array} parsingQueue - Array of queued files to be parsed
+ * @param {Object} allSeriesStack - Series stack object to be populated
+ * @param {Function} callback - Passed through
+ */
+let dumpFiles = function (fileList, parsingQueue, allSeriesStack, callback) {
+  forEach(fileList, function (file) {
+    if (!file.name.startsWith(".") &amp;&amp; !file.name.startsWith("DICOMDIR")) {
+      parsingQueue.push(file);
+      // enable parsing on first available path
+      if (parsingQueueFlag === null) {
+        parsingQueueFlag = true;
+      }
+    }
+  });
+  parseNextFile(parsingQueue, allSeriesStack, callback);
+};
+/**
+ * Dump a single DICOM File (metaData and pixelData)
+ * @inner
+ * @function dumpFile
+ * @param {File} file - File object to be dumped
+ * @param {Function} callback - called with (imageObject, errorString)
+ */
+let dumpFile = function (file, callback) {
+  let reader = new FileReader();
+  reader.onload = function () {
+    let arrayBuffer = reader.result;
+    // Here we have the file data as an ArrayBuffer.
+    // dicomParser requires as input a Uint8Array so we create that here.
+    let byteArray = new Uint8Array(arrayBuffer);
+    let dataSet;
+    try {
+      dataSet = parseDicom(byteArray);
+      byteArray = null;
+      let metadata = {};
+      dumpDataSet(dataSet, metadata);
+      let numberOfFrames = metadata["x00280008"];
+      let isMultiframe = numberOfFrames > 1 ? true : false;
+      // Overwrite SOPInstanceUID to manage multiframes.
+      // Usually different SeriesInstanceUID means different series and that value
+      // is used into the application to group different instances into the same series,
+      // but if a DICOM file contains a multiframe series, then the SeriesInstanceUID
+      // can be shared by other files of the same study.
+      // In multiframe cases, the SOPInstanceUID (unique) is used as SeriesInstanceUID.
+      let seriesInstanceUID = isMultiframe
+        ? metadata["x00080018"]
+        : metadata["x0020000e"];
+      let pixelSpacing = metadata["x00280030"];
+      let imageOrientation = metadata["x00200037"];
+      let imagePosition = metadata["x00200032"];
+      let sliceThickness = metadata["x00180050"];
+      if (dataSet.warnings.length > 0) {
+        // warnings
+        callback(null, dataSet.warnings);
+      } else {
+        let pixelDataElement = dataSet.elements.x7fe00010;
+        if (pixelDataElement) {
+          // done, pixelDataElement found
+          let instanceUID = metadata["x00080018"] || randomId();
+          let imageObject = {
+            // data needed for rendering
+            file: file,
+            dataSet: dataSet
+          };
+          imageObject.metadata = metadata;
+          imageObject.metadata.seriesUID = seriesInstanceUID;
+          imageObject.metadata.instanceUID = instanceUID;
+          imageObject.metadata.studyUID = metadata["x0020000d"];
+          imageObject.metadata.accessionNumber = metadata["x00080050"];
+          imageObject.metadata.studyDescription = metadata["x00081030"];
+          imageObject.metadata.patientName = metadata["x00100010"];
+          imageObject.metadata.patientBirthdate = metadata["x00100030"];
+          imageObject.metadata.seriesDescription = metadata["x0008103e"];
+          imageObject.metadata.seriesDate = metadata["x00080021"];
+          imageObject.metadata.seriesModality =
+            metadata["x00080060"].toLowerCase();
+          imageObject.metadata.intercept = metadata["x00281052"];
+          imageObject.metadata.slope = metadata["x00281053"];
+          imageObject.metadata.pixelSpacing = pixelSpacing;
+          imageObject.metadata.sliceThickness = sliceThickness;
+          imageObject.metadata.imageOrientation = imageOrientation;
+          imageObject.metadata.imagePosition = imagePosition;
+          imageObject.metadata.rows = metadata["x00280010"];
+          imageObject.metadata.cols = metadata["x00280011"];
+          imageObject.metadata.numberOfSlices = metadata["x00540081"]
+            ? metadata["x00540081"] // number of slices
+            : metadata["x00201002"]; // number of instances
+          imageObject.metadata.numberOfFrames = numberOfFrames;
+          if (isMultiframe) {
+            imageObject.metadata.frameTime = metadata["x00181063"];
+            imageObject.metadata.frameDelay = metadata["x00181066"];
+          }
+          imageObject.metadata.windowCenter = metadata["x00281050"];
+          imageObject.metadata.windowWidth = metadata["x00281051"];
+          imageObject.metadata.minPixelValue = metadata["x00280106"];
+          imageObject.metadata.maxPixelValue = metadata["x00280107"];
+          imageObject.metadata.length = pixelDataElement.length;
+          imageObject.metadata.repr = getPixelRepresentation(dataSet);
+          callback(imageObject);
+        } else {
+          // done, no pixelData
+          callback(null, "no pixelData.");
+        }
+      }
+    } catch (err) {
+      console.log(err);
+      callback(null, "can not read this file.");
+    }
+  };
+  reader.readAsArrayBuffer(file);
+};
+</code></pre>
+        </article>
+    </section>
+</div>
+<br class="clear">
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