npm - larvitar - Versions diffs - 0.18.2 → 1.2.0 - Mend

larvitar 0.18.2 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (229) hide show

package/.github/workflows/deploy.yml +3 -12
package/MIGRATION.md +25 -0
package/README.md +28 -27
package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +171 -0
package/docs/documentation/Tools.Annotation.ContoursTool.html +218 -0
package/docs/documentation/Tools.Annotation.DiameterTool.html +219 -0
package/docs/documentation/Tools.Annotation.SeedsTool.html +214 -0
package/docs/documentation/Tools.Brush.BrushTool.html +218 -0
package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +218 -0
package/docs/documentation/Tools.PolylineScissorsTool.html +218 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +978 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +1049 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
package/docs/documentation/global.html +1303 -0
package/docs/documentation/imageAnonymization.js.html +245 -0
package/docs/documentation/imageColormaps.js.html +283 -0
package/docs/documentation/imageContours.js.html +278 -0
package/docs/documentation/imageIo.js.html +291 -0
package/docs/documentation/imageLayers.js.html +188 -0
package/docs/documentation/imageLoading.js.html +297 -0
package/docs/documentation/imageParsing.js.html +385 -0
package/docs/documentation/imagePresets.js.html +207 -0
package/docs/documentation/imageRendering.js.html +849 -0
package/docs/documentation/imageReslice.js.html +162 -0
package/docs/documentation/imageStore.js.html +360 -0
package/docs/documentation/imageTools.js.html +784 -0
package/docs/documentation/imageUtils.js.html +1609 -0
package/docs/documentation/image_colormaps.js.html +283 -0
package/docs/documentation/image_contours.js.html +279 -0
package/docs/documentation/image_io.js.html +288 -0
package/docs/documentation/image_layers.js.html +188 -0
package/docs/documentation/image_loading.js.html +294 -0
package/docs/documentation/image_parsing.js.html +391 -0
package/docs/documentation/image_presets.js.html +207 -0
package/docs/documentation/image_rendering.js.html +845 -0
package/docs/documentation/image_reslice.js.html +164 -0
package/docs/documentation/image_store.js.html +359 -0
package/docs/documentation/image_tools.js.html +792 -0
package/docs/documentation/image_utils.js.html +1609 -0
package/docs/documentation/index.html +175 -0
package/docs/documentation/loaders_commonLoader.js.html +306 -0
package/docs/documentation/loaders_dicomLoader.js.html +130 -0
package/docs/documentation/loaders_fileLoader.js.html +155 -0
package/docs/documentation/loaders_multiframeLoader.js.html +443 -0
package/docs/documentation/loaders_niftiLoader.js.html +150 -0
package/docs/documentation/loaders_nrrdLoader.js.html +545 -0
package/docs/documentation/loaders_resliceLoader.js.html +258 -0
package/docs/documentation/module-imaging_contours.html +954 -0
package/docs/documentation/module-imaging_imageAnonymization.html +544 -0
package/docs/documentation/module-imaging_imageColormaps.html +1012 -0
package/docs/documentation/module-imaging_imageContours.html +954 -0
package/docs/documentation/module-imaging_imageIo.html +1057 -0
package/docs/documentation/module-imaging_imageLayers.html +904 -0
package/docs/documentation/module-imaging_imageLoading.html +1301 -0
package/docs/documentation/module-imaging_imageParsing.html +1356 -0
package/docs/documentation/module-imaging_imagePresets.html +679 -0
package/docs/documentation/module-imaging_imageRendering.html +3223 -0
package/docs/documentation/module-imaging_imageReslice.html +413 -0
package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +284 -0
package/docs/documentation/module-imaging_imageStore.html +1560 -0
package/docs/documentation/module-imaging_imageTools.html +3617 -0
package/docs/documentation/module-imaging_imageUtils.html +7253 -0
package/docs/documentation/module-imaging_io.html +1057 -0
package/docs/documentation/module-imaging_layers.html +904 -0
package/docs/documentation/module-imaging_loading.html +1301 -0
package/docs/documentation/module-imaging_parsing.html +1375 -0
package/docs/documentation/module-imaging_presets.html +679 -0
package/docs/documentation/module-imaging_rendering.html +8094 -0
package/docs/documentation/module-imaging_reslice.html +411 -0
package/docs/documentation/module-imaging_store-Larvitar_Store.html +284 -0
package/docs/documentation/module-imaging_store.html +1537 -0
package/docs/documentation/module-imaging_strategies_eraseFreehand.html +708 -0
package/docs/documentation/module-imaging_strategies_fillFreehand.html +708 -0
package/docs/documentation/module-imaging_tools.html +3617 -0
package/docs/documentation/module-imaging_tools_custom_contourTool.html +207 -0
package/docs/documentation/module-imaging_tools_custom_diameterTool.html +205 -0
package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +205 -0
package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +203 -0
package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +684 -0
package/docs/documentation/module-imaging_tools_default.html +205 -0
package/docs/documentation/module-imaging_tools_interaction.html +530 -0
package/docs/documentation/module-imaging_tools_io.html +832 -0
package/docs/documentation/module-imaging_tools_main.html +2028 -0
package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +567 -0
package/docs/documentation/module-imaging_tools_segmentation.html +3586 -0
package/docs/documentation/module-imaging_tools_state.html +494 -0
package/docs/documentation/module-imaging_utils.html +7253 -0
package/docs/documentation/module-loaders_commonLoader.html +1313 -0
package/docs/documentation/module-loaders_dicomLoader.html +522 -0
package/docs/documentation/module-loaders_fileLoader.html +593 -0
package/docs/documentation/module-loaders_multiframeLoader.html +1169 -0
package/docs/documentation/module-loaders_niftiLoader.html +565 -0
package/docs/documentation/module-loaders_nrrdLoader.html +1459 -0
package/docs/documentation/module-loaders_resliceLoader.html +590 -0
package/docs/documentation/module-monitors_memory.html +980 -0
package/docs/documentation/module-tools_default.html +740 -0
package/docs/documentation/module.exports_module.exports.html +203 -0
package/docs/documentation/monitors_memory.js.html +189 -0
package/docs/documentation/parsers_nrrd.js.html +569 -0
package/docs/documentation/scripts/collapse.js +20 -0
package/docs/documentation/scripts/linenumber.js +25 -0
package/docs/documentation/scripts/nav.js +12 -0
package/docs/documentation/scripts/polyfill.js +4 -0
package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +202 -0
package/docs/documentation/scripts/prettify/lang-css.js +2 -0
package/docs/documentation/scripts/prettify/prettify.js +28 -0
package/docs/documentation/scripts/search.js +83 -0
package/docs/documentation/styles/jsdoc.css +765 -0
package/docs/documentation/styles/prettify.css +80 -0
package/docs/documentation/tools_contourTool.js.html +1963 -0
package/docs/documentation/tools_custom_contourTool.js.html +1968 -0
package/docs/documentation/tools_custom_diameterTool.js.html +225 -0
package/docs/documentation/tools_custom_editMaskTool.js.html +225 -0
package/docs/documentation/tools_custom_polylineScissorsTool.js.html +143 -0
package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +245 -0
package/docs/documentation/tools_default.js.html +576 -0
package/docs/documentation/tools_diameterTool.js.html +219 -0
package/docs/documentation/tools_editMaskTool.js.html +219 -0
package/docs/documentation/tools_interaction.js.html +258 -0
package/docs/documentation/tools_io.js.html +297 -0
package/docs/documentation/tools_main.js.html +443 -0
package/docs/documentation/tools_polygonSegmentationMixin.js.html +329 -0
package/docs/documentation/tools_polylineScissorsTool.js.html +136 -0
package/docs/documentation/tools_seedTool.js.html +423 -0
package/docs/documentation/tools_segmentation.js.html +558 -0
package/docs/documentation/tools_state.js.html +163 -0
package/docs/documentation/tools_strategies_eraseFreehand.js.html +160 -0
package/docs/documentation/tools_strategies_fillFreehand.js.html +163 -0
package/docs/documentation/tools_thresholdsBrushTool.js.html +239 -0
package/docs/documentation/tools_tools.default.js.html +569 -0
package/docs/documentation/tools_tools.interaction.js.html +251 -0
package/docs/documentation/tools_tools.io.js.html +288 -0
package/docs/documentation/tools_tools.main.js.html +442 -0
package/docs/documentation/tools_tools.segmentation.js.html +445 -0
package/docs/documentation/tools_tools.state.js.html +157 -0
package/docs/examples/base.html +170 -0
package/docs/examples/colorMaps.html +181 -0
package/docs/examples/defaultTools.html +246 -0
package/docs/examples/demo/anon1 +0 -0
package/docs/examples/demo/anon10 +0 -0
package/docs/examples/demo/anon11 +0 -0
package/docs/examples/demo/anon12 +0 -0
package/docs/examples/demo/anon13 +0 -0
package/docs/examples/demo/anon14 +0 -0
package/docs/examples/demo/anon15 +0 -0
package/docs/examples/demo/anon16 +0 -0
package/docs/examples/demo/anon17 +0 -0
package/docs/examples/demo/anon18 +0 -0
package/docs/examples/demo/anon19 +0 -0
package/docs/examples/demo/anon2 +0 -0
package/docs/examples/demo/anon20 +0 -0
package/docs/examples/demo/anon21 +0 -0
package/docs/examples/demo/anon22 +0 -0
package/docs/examples/demo/anon23 +0 -0
package/docs/examples/demo/anon24 +0 -0
package/docs/examples/demo/anon3 +0 -0
package/docs/examples/demo/anon4 +0 -0
package/docs/examples/demo/anon5 +0 -0
package/docs/examples/demo/anon6 +0 -0
package/docs/examples/demo/anon7 +0 -0
package/docs/examples/demo/anon8 +0 -0
package/docs/examples/demo/anon9 +0 -0
package/docs/examples/demo/example.nrrd +0 -0
package/docs/examples/demo/segmentation.nrrd +0 -0
package/docs/examples/demo/xa_integris.dcm +0 -0
package/docs/examples/index.html +129 -0
package/docs/examples/larvitar.js +108623 -0
package/docs/examples/layers.html +250 -0
package/docs/examples/masks.html +273 -0
package/docs/examples/multiframe.html +200 -0
package/docs/examples/nrrd.html +96 -0
package/docs/examples/reslice.html +174 -0
package/docs/index.html +92 -0
package/imaging/dataDictionary.json +21865 -21865
package/imaging/imageAnonymization.js +161 -0
package/imaging/{image_colormaps.js → imageColormaps.js} +2 -2
package/imaging/{image_contours.js → imageContours.js} +1 -2
package/imaging/{image_io.js → imageIo.js} +18 -15
package/imaging/{image_layers.js → imageLayers.js} +2 -2
package/imaging/{image_loading.js → imageLoading.js} +9 -6
package/imaging/imageParsing.js +301 -0
package/imaging/{image_presets.js → imagePresets.js} +2 -2
package/imaging/{image_rendering.js → imageRendering.js} +36 -32
package/imaging/imageReslice.js +78 -0
package/imaging/{image_store.js → imageStore.js} +8 -7
package/imaging/{image_tools.js → imageTools.js} +15 -23
package/imaging/{image_utils.js → imageUtils.js} +1 -1
package/imaging/loaders/commonLoader.js +1 -1
package/imaging/loaders/dicomLoader.js +1 -1
package/imaging/loaders/fileLoader.js +2 -2
package/imaging/loaders/multiframeLoader.js +6 -2
package/imaging/loaders/nrrdLoader.js +11 -7
package/imaging/tools/{contourTool.js → custom/contourTool.js} +25 -20
package/imaging/tools/{diameterTool.js → custom/diameterTool.js} +9 -3
package/imaging/tools/{editMaskTool.js → custom/editMaskTool.js} +7 -1
package/imaging/tools/{polylineScissorsTool.js → custom/polylineScissorsTool.js} +12 -5
package/imaging/tools/{seedTool.js → custom/seedTool.js} +3 -3
package/imaging/tools/{thresholdsBrushTool.js → custom/thresholdsBrushTool.js} +7 -1
package/imaging/tools/{tools.default.js → default.js} +10 -3
package/imaging/tools/{tools.interaction.js → interaction.js} +13 -6
package/imaging/tools/{tools.io.js → io.js} +15 -6
package/imaging/tools/{tools.main.js → main.js} +16 -14
package/imaging/tools/polygonSegmentationMixin.js +8 -4
package/imaging/tools/{tools.segmentation.js → segmentation.js} +171 -58
package/imaging/tools/segmentations.md +38 -0
package/imaging/tools/setLabelMap3D.js +248 -0
package/imaging/tools/{tools.state.js → state.js} +7 -1
package/imaging/tools/strategies/eraseFreehand.js +8 -9
package/imaging/tools/strategies/fillFreehand.js +8 -9
package/index.js +44 -39
package/modules/vuex/larvitar.js +13 -3
package/package.json +13 -10
package/imaging/image_parsing.js +0 -307
package/imaging/image_reslice.js +0 -80

package/docs/documentation/tools_seedTool.js.html ADDED Viewed

@@ -0,0 +1,423 @@
+<!DOCTYPE html>
+<html lang="en">
+<head>
+    <meta charset="utf-8">
+    <title>tools/seedTool.js - Larvitar</title>
+    <meta name="description" content="Dicom Image Toolkit for CornestoneJS" />
+        <meta name="keywords" content="imaging, dataviz, medical, cornerstone" />
+        <meta name="keyword" content="imaging, dataviz, medical, cornerstone" />
+    <script src="scripts/prettify/prettify.js"></script>
+    <script src="scripts/prettify/lang-css.js"></script>
+    <!--[if lt IE 9]>
+      <script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
+    <![endif]-->
+    <link type="text/css" rel="stylesheet" href="styles/prettify.css">
+    <link type="text/css" rel="stylesheet" href="styles/jsdoc.css">
+    <script src="scripts/nav.js" defer></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+</head>
+<body>
+<input type="checkbox" id="nav-trigger" class="nav-trigger" />
+<label for="nav-trigger" class="navicon-button x">
+  <div class="navicon"></div>
+</label>
+<label for="nav-trigger" class="overlay"></label>
+<nav >
+    <input type="text" id="nav-search" placeholder="Search" />
+    <h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module.exports_module.exports.html">module.exports#module.exports</a></li><li><a href="module-imaging_store-Larvitar_Store.html">imaging/store~Larvitar_Store</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Annotation.SeedsTool.html">Tools.Annotation.SeedsTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_contours.html">imaging/contours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_io.html">imaging/io</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_io.html#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#~buildVolume">buildVolume</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_layers.html">imaging/layers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#changeOpacityLayer">changeOpacityLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#getMainLayer">getMainLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#loadImageLayers">loadImageLayers</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#updateImageLayer">updateImageLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#~buildLayers">buildLayers</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#~loadLayers">loadLayers</a></li></ul></li><li><a href="module-imaging_loading.html">imaging/loading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_parsing.html">imaging/parsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpDataSet">dumpDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#resetImageParsing">resetImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~clearFileSystem">clearFileSystem</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~dumpFile">dumpFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~dumpFiles">dumpFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~errorHandler">errorHandler</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_presets.html">imaging/presets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_rendering.html">imaging/rendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getColormapsList">getColormapsList</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#reloadImage">reloadImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderFrame">renderFrame</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#toggleMouseHandlers">toggleMouseHandlers</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateViewportData">updateViewportData</a></li></ul></li><li></li><li><a href="module-imaging_reslice.html">imaging/reslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_reslice.html#cleanResliceStore">cleanResliceStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_reslice.html#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_store.html">imaging/store</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_store.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_store.html#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~set">set</a></li></ul></li><li><a href="module-imaging_tools.html">imaging/tools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_utils.html">imaging/utils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#remapVoxel">remapVoxel</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#spacingArray">spacingArray</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getCustomImageId">getCustomImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageLoader">getLarvitarImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesData">getSeriesData</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId">getDicomImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getSeriesDataFromDicomLoader">getSeriesDataFromDicomLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#populateDicomManager">populateDicomManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#removeSeriesFromDicomManager">removeSeriesFromDicomManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#resetDicomManager">resetDicomManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#resetImageLoader">resetImageLoader</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSeriesDataFromNrrdLoader">getSeriesDataFromNrrdLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage">loadNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#removeSeriesFromNrrdManager">removeSeriesFromNrrdManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#resetNrrdLoader">resetNrrdLoader</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="ContoursTool.html#event:_drawingDoubleTapClickCallback">ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDoubleClickCallback">ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDownCallback">ContoursTool#_drawingMouseDownCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDragCallback">ContoursTool#_drawingMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseMoveCallback">ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseUpCallback">ContoursTool#_drawingMouseUpCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchDragCallback">ContoursTool#_drawingTouchDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchStartCallback">ContoursTool#_drawingTouchStartCallback</a></li><li><a href="ContoursTool.html#event:_editMouseDragCallback">ContoursTool#_editMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_editTouchDragCallback">ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#_checkIfDrawing">_checkIfDrawing</a></li><li><a href="global.html#_paint">_paint</a></li><li><a href="global.html#addDefaultTools">addDefaultTools</a></li><li><a href="global.html#addTool">addTool</a></li><li><a href="global.html#buildMultiFrameImage">buildMultiFrameImage</a></li><li><a href="global.html#configureCornerstoneToolsSettings">configureCornerstoneToolsSettings</a></li><li><a href="global.html">createCustomImage</a></li><li><a href="global.html#csToolsCreateStack">csToolsCreateStack</a></li><li><a href="global.html#csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li><a href="global.html#download">download</a></li><li><a href="global.html#eraseFreehand">eraseFreehand</a></li><li><a href="global.html#eraseInsideFreehand">eraseInsideFreehand</a></li><li><a href="global.html#eraseOutsideFreehand">eraseOutsideFreehand</a></li><li><a href="global.html#exportAnnotations">exportAnnotations</a></li><li><a href="global.html#extractToolInfo">extractToolInfo</a></li><li><a href="global.html#fillFreehand">fillFreehand</a></li><li><a href="global.html#fillInsideFreehand">fillInsideFreehand</a></li><li><a href="global.html#fillOutsideFreehand">fillOutsideFreehand</a></li><li><a href="global.html#generateCSV">generateCSV</a></li><li><a href="global.html#getCircleWithThreshold">getCircleWithThreshold</a></li><li><a href="global.html">getMultiFrameImageId</a></li><li><a href="global.html">getSeriesDataFromMultiFrameLoaderLoader</a></li><li><a href="global.html#initializeCSTools">initializeCSTools</a></li><li><a href="global.html#isDrawing">isDrawing</a></li><li><a href="global.html#isToolMissing">isToolMissing</a></li><li><a href="global.html#loadAnnotations">loadAnnotations</a></li><li><a href="global.html#loadMultiFrameImage">loadMultiFrameImage</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#renderToolData">renderToolData</a></li><li><a href="global.html">resetMultiFrameLoader</a></li><li><a href="global.html#restoreToolState">restoreToolState</a></li><li><a href="global.html#saveAnnotations">saveAnnotations</a></li><li><a href="global.html#saveToolState">saveToolState</a></li><li><a href="global.html">setPixelDataType</a></li><li><a href="global.html#setToolActive">setToolActive</a></li><li><a href="global.html#setToolDisabled">setToolDisabled</a></li><li><a href="global.html#setToolEnabled">setToolEnabled</a></li><li><a href="global.html#setToolPassive">setToolPassive</a></li></ul>
+</nav>
+<div id="main">
+    <h1 class="page-title">tools/seedTool.js</h1>
+    <section>
+        <article>
+            <pre class="prettyprint source linenums"><code>// external libraries
+import csTools from "cornerstone-tools";
+import { each, cloneDeep } from "lodash";
+// internal libraries
+import { remapVoxel } from "../image_utils";
+import { addToolStateSingleSlice, setToolEnabled } from "../image_tools";
+import { getSliceNumberFromImageId } from "../loaders/nrrdLoader";
+// cornerstone tools imports
+const BaseAnnotationTool = csTools.importInternal("base/BaseAnnotationTool");
+// State
+const getToolState = csTools.getToolState;
+// Drawing
+const getNewContext = csTools.importInternal("drawing/getNewContext");
+const draw = csTools.importInternal("drawing/draw");
+const drawTextBox = csTools.importInternal("drawing/drawTextBox");
+const drawCircle = csTools.importInternal("drawing/drawCircle");
+// Utilities
+const getRGBPixels = csTools.importInternal("util/getRGBPixels");
+const calculateSUV = csTools.importInternal("util/calculateSUV");
+const probeCursor = csTools.importInternal("util/probeCursor");
+const getLogger = csTools.importInternal("util/getLogger");
+const throttle = csTools.importInternal("util/throttle");
+const logger = getLogger("tools:annotation:ProbeTool");
+// internal constants
+const seedLabels = {
+  segmentation_01: "Aorta",
+  segmentation_02: "Aneurysm",
+  segmentation_03: "Carrefour",
+  regionGrowing: "regionGrowing"
+};
+/**
+ * @public
+ * @class SeedsTool
+ * @memberof Tools.Annotation
+ * @classdesc Tool which provides cohordinates of the picked poin
+ * @extends Tools.Base.BaseAnnotationTool
+ */
+export class SeedsTool extends BaseAnnotationTool {
+  constructor(props = {}) {
+    const defaultProps = {
+      name: "Seeds",
+      supportedInteractionTypes: ["Mouse"],
+      svgCursor: probeCursor
+    };
+    super(props, defaultProps);
+    if (props.initialize) {
+      this.initializeTool(props.preLoadSeeds, props.initViewport);
+    }
+    this.throttledUpdateCachedStats = throttle(this.updateCachedStats, 110);
+  }
+  initializeTool(seeds, elementId) {
+    let element = document.getElementById(elementId);
+    each(seeds, seed => {
+      let change = {
+        visible: true,
+        active: true,
+        invalidated: true,
+        color: seed.color,
+        name: seed.tag,
+        slice: seed.native_k,
+        handles: {
+          end: {
+            x: seed.native_i,
+            y: seed.native_j,
+            highlight: true,
+            active: true
+          }
+        }
+      };
+      let sliceNumber = seed.native_k;
+      // add to master viewport
+      addToolStateSingleSlice(element, this.name, change, sliceNumber);
+      // sync remaining viewports
+      this.syncViewports(elementId, change, sliceNumber);
+    });
+    csTools.external.cornerstone.updateImage(element);
+  }
+  createNewMeasurement(eventData) {
+    if (eventData.event.srcElement.localName != "canvas") {
+      return;
+    }
+    const goodEventData =
+      eventData &amp;&amp; eventData.currentPoints &amp;&amp; eventData.currentPoints.image;
+    if (!goodEventData) {
+      logger.error(
+        `required eventData not supplied to tool ${this.name}'s createNewMeasurement`
+      );
+      return;
+    }
+    var res = {
+      visible: true,
+      active: true,
+      invalidated: true,
+      color: this.options.color,
+      name: this.options.seed_name,
+      slice: getSliceNumberFromImageId(
+        eventData.image.imageId,
+        eventData.element.id
+      ),
+      handles: {
+        end: {
+          x: eventData.currentPoints.image.x,
+          y: eventData.currentPoints.image.y,
+          highlight: true,
+          active: true
+        }
+      },
+      native_i: 0,
+      native_j: 0,
+      native_k: 0
+    };
+    let sliceNumber = getSliceNumberFromImageId(
+      eventData.image.imageId,
+      eventData.element.id
+    );
+    // store native coordinates
+    this.storeNativeCoordinates(res, eventData.element.id, sliceNumber);
+    // sync all the viewports
+    this.syncViewports(eventData.element.id, res, sliceNumber);
+    // optionally set data in store
+    // set mode to "enabled"
+    setToolEnabled(this.name);
+    return res;
+  }
+  /**
+   *
+   *
+   * @param {*} element
+   * @param {*} data
+   * @param {*} coords
+   * @returns {Boolean}
+   */
+  pointNearTool(element, data, coords) {
+    const hasEndHandle = data &amp;&amp; data.handles &amp;&amp; data.handles.end;
+    const validParameters = hasEndHandle;
+    if (!validParameters) {
+      logger.warn(
+        `invalid parameters supplied to tool ${this.name}'s pointNearTool`
+      );
+    }
+    if (!validParameters || data.visible === false) {
+      return false;
+    }
+    const probeCoords = csTools.external.cornerstone.pixelToCanvas(
+      element,
+      data.handles.end
+    );
+    return (
+      csTools.external.cornerstoneMath.point.distance(probeCoords, coords) &lt; 5
+    );
+  }
+  updateCachedStats(image, element, data) {
+    const x = Math.round(data.handles.end.x);
+    const y = Math.round(data.handles.end.y);
+    const stats = {};
+    if (x >= 0 &amp;&amp; y >= 0 &amp;&amp; x &lt; image.columns &amp;&amp; y &lt; image.rows) {
+      stats.x = x;
+      stats.y = y;
+      if (image.color) {
+        stats.storedPixels = getRGBPixels(element, x, y, 1, 1);
+      } else {
+        stats.storedPixels = csTools.external.cornerstone.getStoredPixels(
+          element,
+          x,
+          y,
+          1,
+          1
+        );
+        stats.sp = stats.storedPixels[0];
+        stats.mo = stats.sp * image.slope + image.intercept;
+        stats.suv = calculateSUV(image, stats.sp);
+        stats.color = data.color || this.options.color;
+        stats.name = data.name || this.options.seed_name;
+      }
+    }
+    data.cachedStats = stats;
+    data.invalidated = false;
+  }
+  renderToolData(evt) {
+    const eventData = evt.detail;
+    const toolData = getToolState(evt.currentTarget, this.name);
+    if (!toolData) {
+      return;
+    }
+    // We have tool data for this element - iterate over each one and draw it
+    const context = getNewContext(eventData.canvasContext.canvas);
+    const { image, element } = eventData;
+    for (let i = 0; i &lt; toolData.data.length; i++) {
+      const data = toolData.data[i];
+      if (data.visible === false) {
+        continue;
+      }
+      draw(context, context => {
+        const center = data.handles.end;
+        // Update textbox stats
+        if (data.invalidated === true) {
+          if (data.cachedStats) {
+            this.throttledUpdateCachedStats(image, element, data);
+          } else {
+            this.updateCachedStats(image, element, data);
+          }
+        }
+        const { x, y, color, name } = data.cachedStats;
+        let text;
+        if (x >= 0 &amp;&amp; y >= 0 &amp;&amp; x &lt; image.columns &amp;&amp; y &lt; image.rows) {
+          text = this.getLabelText(name);
+          // Coords for text
+          const coords = {
+            // Translate the x/y away from the cursor
+            x: data.handles.end.x + 3,
+            y: data.handles.end.y - 3
+          };
+          const textCoords = csTools.external.cornerstone.pixelToCanvas(
+            eventData.element,
+            coords
+          );
+          drawTextBox(context, text, textCoords.x, textCoords.y, color);
+          drawCircle(context, element, center, this.options.radius || 3, {
+            color: color,
+            fillStyle: color
+          });
+        }
+      });
+    }
+  }
+  getLabelText(name) {
+    // let text = (text = ` ${name}`);
+    let text = seedLabels[name];
+    return text;
+  }
+  storeNativeCoordinates(input, inputViewportId, frame) {
+    let native = remapVoxel(
+      [
+        Math.floor(input.handles.end.x),
+        Math.floor(input.handles.end.y),
+        parseInt(frame)
+      ],
+      inputViewportId,
+      "axial"
+    );
+    input.native_i = native[0];
+    input.native_j = native[1];
+    input.native_k = native[2];
+  }
+  syncViewports(pickingViewportId, change, sliceNumber) {
+    let enabledElements = csTools.external.cornerstone.getEnabledElements();
+    var from = pickingViewportId;
+    each(enabledElements, el => {
+      if (el.element.id == pickingViewportId) {
+        return;
+      }
+      let remapped = this.getRemappedChange(
+        change,
+        sliceNumber,
+        from,
+        el.element.id
+      );
+      addToolStateSingleSlice(
+        el.element,
+        this.name,
+        remapped.change,
+        remapped.sliceNumber
+      );
+      csTools.external.cornerstone.updateImage(el.element);
+    });
+  }
+  getRemappedChange(input, frame, fromOrientation, toOrientation) {
+    let ijk = remapVoxel(
+      [
+        Math.floor(input.handles.end.x),
+        Math.floor(input.handles.end.y),
+        parseInt(frame)
+      ],
+      fromOrientation,
+      toOrientation
+    );
+    let output = cloneDeep(input);
+    output.handles.end.x = ijk[0];
+    output.handles.end.y = ijk[1];
+    return {
+      change: output,
+      sliceNumber: ijk[2]
+    };
+  }
+}
+</code></pre>
+        </article>
+    </section>
+</div>
+<br class="clear">
+<footer>
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 3.6.4</a> using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
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