cognitive-core 0.2.0 → 0.2.2

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Files changed (397) hide show
  1. package/.claude/settings.json +111 -2
  2. package/.sessionlog/settings.json +4 -0
  3. package/dist/atlas.d.ts +10 -0
  4. package/dist/atlas.d.ts.map +1 -1
  5. package/dist/atlas.js +65 -0
  6. package/dist/atlas.js.map +1 -1
  7. package/dist/index.d.ts +1 -1
  8. package/dist/index.d.ts.map +1 -1
  9. package/dist/index.js +5 -1
  10. package/dist/index.js.map +1 -1
  11. package/dist/learning/index.d.ts +1 -1
  12. package/dist/learning/index.d.ts.map +1 -1
  13. package/dist/learning/index.js.map +1 -1
  14. package/dist/learning/pipeline.d.ts +4 -31
  15. package/dist/learning/pipeline.d.ts.map +1 -1
  16. package/dist/learning/pipeline.js +12 -64
  17. package/dist/learning/pipeline.js.map +1 -1
  18. package/dist/learning/unified-pipeline.d.ts +30 -0
  19. package/dist/learning/unified-pipeline.d.ts.map +1 -1
  20. package/dist/learning/unified-pipeline.js +207 -0
  21. package/dist/learning/unified-pipeline.js.map +1 -1
  22. package/dist/memory/candidate-retrieval.d.ts.map +1 -1
  23. package/dist/memory/candidate-retrieval.js +3 -1
  24. package/dist/memory/candidate-retrieval.js.map +1 -1
  25. package/dist/memory/curated-loader.d.ts +21 -4
  26. package/dist/memory/curated-loader.d.ts.map +1 -1
  27. package/dist/memory/curated-loader.js +53 -16
  28. package/dist/memory/curated-loader.js.map +1 -1
  29. package/dist/memory/index.d.ts +2 -1
  30. package/dist/memory/index.d.ts.map +1 -1
  31. package/dist/memory/index.js +3 -1
  32. package/dist/memory/index.js.map +1 -1
  33. package/dist/memory/playbook.d.ts +6 -0
  34. package/dist/memory/playbook.d.ts.map +1 -1
  35. package/dist/memory/playbook.js +15 -0
  36. package/dist/memory/playbook.js.map +1 -1
  37. package/dist/memory/source-resolver.d.ts +120 -0
  38. package/dist/memory/source-resolver.d.ts.map +1 -0
  39. package/dist/memory/source-resolver.js +300 -0
  40. package/dist/memory/source-resolver.js.map +1 -0
  41. package/dist/types/config.d.ts +141 -0
  42. package/dist/types/config.d.ts.map +1 -1
  43. package/dist/types/config.js +40 -0
  44. package/dist/types/config.js.map +1 -1
  45. package/dist/types/index.d.ts +1 -1
  46. package/dist/types/index.d.ts.map +1 -1
  47. package/dist/types/index.js +1 -1
  48. package/dist/types/index.js.map +1 -1
  49. package/dist/utils/error-classifier.js +8 -8
  50. package/dist/utils/error-classifier.js.map +1 -1
  51. package/dist/workspace/efficacy-toolkit.d.ts +164 -0
  52. package/dist/workspace/efficacy-toolkit.d.ts.map +1 -0
  53. package/dist/workspace/efficacy-toolkit.js +281 -0
  54. package/dist/workspace/efficacy-toolkit.js.map +1 -0
  55. package/dist/workspace/index.d.ts +2 -1
  56. package/dist/workspace/index.d.ts.map +1 -1
  57. package/dist/workspace/index.js +3 -1
  58. package/dist/workspace/index.js.map +1 -1
  59. package/dist/workspace/templates/index.d.ts +3 -0
  60. package/dist/workspace/templates/index.d.ts.map +1 -1
  61. package/dist/workspace/templates/index.js +6 -0
  62. package/dist/workspace/templates/index.js.map +1 -1
  63. package/dist/workspace/templates/playbook-decay-detection.d.ts +46 -0
  64. package/dist/workspace/templates/playbook-decay-detection.d.ts.map +1 -0
  65. package/dist/workspace/templates/playbook-decay-detection.js +197 -0
  66. package/dist/workspace/templates/playbook-decay-detection.js.map +1 -0
  67. package/dist/workspace/templates/playbook-efficacy-audit.d.ts +46 -0
  68. package/dist/workspace/templates/playbook-efficacy-audit.d.ts.map +1 -0
  69. package/dist/workspace/templates/playbook-efficacy-audit.js +160 -0
  70. package/dist/workspace/templates/playbook-efficacy-audit.js.map +1 -0
  71. package/dist/workspace/templates/playbook-lifecycle-review.d.ts +51 -0
  72. package/dist/workspace/templates/playbook-lifecycle-review.d.ts.map +1 -0
  73. package/dist/workspace/templates/playbook-lifecycle-review.js +187 -0
  74. package/dist/workspace/templates/playbook-lifecycle-review.js.map +1 -0
  75. package/dist/workspace/types.d.ts +12 -54
  76. package/dist/workspace/types.d.ts.map +1 -1
  77. package/dist/workspace/types.js.map +1 -1
  78. package/package.json +8 -2
  79. package/playbooks/compound-engineering/adversarial-review.json +51 -0
  80. package/playbooks/compound-engineering/agent-native-architecture.json +59 -0
  81. package/playbooks/compound-engineering/agent-native-review.json +54 -0
  82. package/playbooks/compound-engineering/api-contract-review.json +52 -0
  83. package/playbooks/compound-engineering/brainstorm-requirements.json +55 -0
  84. package/playbooks/compound-engineering/bug-reproduction.json +62 -0
  85. package/playbooks/compound-engineering/confidence-calibration.json +49 -0
  86. package/playbooks/compound-engineering/correctness-review.json +49 -0
  87. package/playbooks/compound-engineering/data-migration-safety.json +59 -0
  88. package/playbooks/compound-engineering/deployment-verification.json +63 -0
  89. package/playbooks/compound-engineering/error-recovery-patterns.json +53 -0
  90. package/playbooks/compound-engineering/implementation-planning.json +64 -0
  91. package/playbooks/compound-engineering/issue-pattern-analysis.json +53 -0
  92. package/playbooks/compound-engineering/knowledge-compounding.json +63 -0
  93. package/playbooks/compound-engineering/learnings-research.json +54 -0
  94. package/playbooks/compound-engineering/maintainability-review.json +49 -0
  95. package/playbooks/compound-engineering/performance-review.json +54 -0
  96. package/playbooks/compound-engineering/plan-adversarial-review.json +56 -0
  97. package/playbooks/compound-engineering/plan-feasibility-review.json +56 -0
  98. package/playbooks/compound-engineering/project-standards-review.json +52 -0
  99. package/playbooks/compound-engineering/reliability-review.json +53 -0
  100. package/playbooks/compound-engineering/review-orchestration.json +64 -0
  101. package/playbooks/compound-engineering/security-review.json +54 -0
  102. package/playbooks/compound-engineering/systematic-execution.json +64 -0
  103. package/playbooks/compound-engineering/testing-review.json +50 -0
  104. package/src/atlas.ts +96 -0
  105. package/src/index.ts +27 -0
  106. package/src/learning/index.ts +1 -0
  107. package/src/learning/unified-pipeline.ts +271 -1
  108. package/src/memory/candidate-retrieval.ts +2 -1
  109. package/src/memory/curated-loader.ts +69 -16
  110. package/src/memory/index.ts +16 -0
  111. package/src/memory/playbook.ts +19 -0
  112. package/src/memory/source-resolver.ts +422 -0
  113. package/src/types/config.ts +46 -0
  114. package/src/types/index.ts +4 -0
  115. package/src/utils/error-classifier.ts +8 -8
  116. package/src/workspace/efficacy-toolkit.ts +496 -0
  117. package/src/workspace/index.ts +29 -0
  118. package/src/workspace/templates/index.ts +24 -0
  119. package/src/workspace/templates/playbook-decay-detection.ts +272 -0
  120. package/src/workspace/templates/playbook-efficacy-audit.ts +246 -0
  121. package/src/workspace/templates/playbook-lifecycle-review.ts +274 -0
  122. package/src/workspace/types.ts +22 -78
  123. package/tests/fixtures/behavioral-trajectories.ts +210 -0
  124. package/tests/integration/curated-sources-e2e.test.ts +502 -0
  125. package/tests/integration/pipeline-data-correctness.test.ts +794 -0
  126. package/tests/learning/meta-learner.test.ts +418 -0
  127. package/tests/learning/pipeline-memory-updates.test.ts +721 -0
  128. package/tests/learning/unified-pipeline-efficacy.test.ts +232 -0
  129. package/tests/memory/candidate-retrieval.test.ts +167 -0
  130. package/tests/memory/compound-engineering-seed.test.ts +338 -0
  131. package/tests/memory/curated-loader-extended.test.ts +225 -0
  132. package/tests/memory/meta.test.ts +399 -0
  133. package/tests/memory/playbook-quality-validation.test.ts +430 -0
  134. package/tests/memory/source-resolver.test.ts +700 -0
  135. package/tests/search/evaluator.test.ts +257 -0
  136. package/tests/search/verification-runner.test.ts +357 -0
  137. package/tests/utils/error-classifier.test.ts +149 -0
  138. package/tests/utils/trajectory-helpers.test.ts +163 -0
  139. package/tests/workspace/efficacy-toolkit.test.ts +404 -0
  140. package/tests/workspace/templates/playbook-efficacy.test.ts +377 -0
  141. package/.claude/settings.local.json +0 -11
  142. package/dist/learning/llm-extractor.d.ts +0 -88
  143. package/dist/learning/llm-extractor.d.ts.map +0 -1
  144. package/dist/learning/llm-extractor.js +0 -372
  145. package/dist/learning/llm-extractor.js.map +0 -1
  146. package/dist/learning/loop-coordinator.d.ts +0 -61
  147. package/dist/learning/loop-coordinator.d.ts.map +0 -1
  148. package/dist/learning/loop-coordinator.js +0 -96
  149. package/dist/learning/loop-coordinator.js.map +0 -1
  150. package/references/agent-workspace/CLAUDE.md +0 -74
  151. package/references/agent-workspace/README.md +0 -587
  152. package/references/agent-workspace/media/banner.png +0 -0
  153. package/references/agent-workspace/package-lock.json +0 -2061
  154. package/references/agent-workspace/package.json +0 -54
  155. package/references/agent-workspace/src/handle.ts +0 -122
  156. package/references/agent-workspace/src/index.ts +0 -32
  157. package/references/agent-workspace/src/manager.ts +0 -102
  158. package/references/agent-workspace/src/readers/json.ts +0 -71
  159. package/references/agent-workspace/src/readers/markdown.ts +0 -37
  160. package/references/agent-workspace/src/readers/raw.ts +0 -27
  161. package/references/agent-workspace/src/types.ts +0 -68
  162. package/references/agent-workspace/src/validation.ts +0 -93
  163. package/references/agent-workspace/src/writers/json.ts +0 -17
  164. package/references/agent-workspace/src/writers/markdown.ts +0 -27
  165. package/references/agent-workspace/src/writers/raw.ts +0 -22
  166. package/references/agent-workspace/tests/errors.test.ts +0 -652
  167. package/references/agent-workspace/tests/handle.test.ts +0 -144
  168. package/references/agent-workspace/tests/manager.test.ts +0 -124
  169. package/references/agent-workspace/tests/readers.test.ts +0 -205
  170. package/references/agent-workspace/tests/validation.test.ts +0 -196
  171. package/references/agent-workspace/tests/writers.test.ts +0 -108
  172. package/references/agent-workspace/tsconfig.json +0 -20
  173. package/references/agent-workspace/tsup.config.ts +0 -9
  174. package/references/minimem/.claude/settings.json +0 -7
  175. package/references/minimem/.sudocode/issues.jsonl +0 -18
  176. package/references/minimem/.sudocode/specs.jsonl +0 -1
  177. package/references/minimem/CLAUDE.md +0 -310
  178. package/references/minimem/README.md +0 -556
  179. package/references/minimem/claude-plugin/.claude-plugin/plugin.json +0 -10
  180. package/references/minimem/claude-plugin/.mcp.json +0 -7
  181. package/references/minimem/claude-plugin/README.md +0 -158
  182. package/references/minimem/claude-plugin/commands/recall.md +0 -47
  183. package/references/minimem/claude-plugin/commands/remember.md +0 -41
  184. package/references/minimem/claude-plugin/hooks/__tests__/hooks.test.ts +0 -272
  185. package/references/minimem/claude-plugin/hooks/hooks.json +0 -27
  186. package/references/minimem/claude-plugin/hooks/session-end.sh +0 -86
  187. package/references/minimem/claude-plugin/hooks/session-start.sh +0 -85
  188. package/references/minimem/claude-plugin/skills/memory/SKILL.md +0 -108
  189. package/references/minimem/package-lock.json +0 -5373
  190. package/references/minimem/package.json +0 -60
  191. package/references/minimem/scripts/postbuild.js +0 -35
  192. package/references/minimem/src/__tests__/edge-cases.test.ts +0 -371
  193. package/references/minimem/src/__tests__/errors.test.ts +0 -265
  194. package/references/minimem/src/__tests__/helpers.ts +0 -199
  195. package/references/minimem/src/__tests__/internal.test.ts +0 -407
  196. package/references/minimem/src/__tests__/knowledge.test.ts +0 -287
  197. package/references/minimem/src/__tests__/minimem.integration.test.ts +0 -1127
  198. package/references/minimem/src/__tests__/session.test.ts +0 -190
  199. package/references/minimem/src/cli/__tests__/commands.test.ts +0 -759
  200. package/references/minimem/src/cli/commands/__tests__/conflicts.test.ts +0 -141
  201. package/references/minimem/src/cli/commands/append.ts +0 -76
  202. package/references/minimem/src/cli/commands/config.ts +0 -262
  203. package/references/minimem/src/cli/commands/conflicts.ts +0 -413
  204. package/references/minimem/src/cli/commands/daemon.ts +0 -169
  205. package/references/minimem/src/cli/commands/index.ts +0 -12
  206. package/references/minimem/src/cli/commands/init.ts +0 -88
  207. package/references/minimem/src/cli/commands/mcp.ts +0 -177
  208. package/references/minimem/src/cli/commands/push-pull.ts +0 -213
  209. package/references/minimem/src/cli/commands/search.ts +0 -158
  210. package/references/minimem/src/cli/commands/status.ts +0 -84
  211. package/references/minimem/src/cli/commands/sync-init.ts +0 -290
  212. package/references/minimem/src/cli/commands/sync.ts +0 -70
  213. package/references/minimem/src/cli/commands/upsert.ts +0 -197
  214. package/references/minimem/src/cli/config.ts +0 -584
  215. package/references/minimem/src/cli/index.ts +0 -264
  216. package/references/minimem/src/cli/shared.ts +0 -161
  217. package/references/minimem/src/cli/sync/__tests__/central.test.ts +0 -152
  218. package/references/minimem/src/cli/sync/__tests__/conflicts.test.ts +0 -209
  219. package/references/minimem/src/cli/sync/__tests__/daemon.test.ts +0 -118
  220. package/references/minimem/src/cli/sync/__tests__/detection.test.ts +0 -207
  221. package/references/minimem/src/cli/sync/__tests__/integration.test.ts +0 -476
  222. package/references/minimem/src/cli/sync/__tests__/registry.test.ts +0 -363
  223. package/references/minimem/src/cli/sync/__tests__/state.test.ts +0 -255
  224. package/references/minimem/src/cli/sync/__tests__/validation.test.ts +0 -193
  225. package/references/minimem/src/cli/sync/__tests__/watcher.test.ts +0 -178
  226. package/references/minimem/src/cli/sync/central.ts +0 -292
  227. package/references/minimem/src/cli/sync/conflicts.ts +0 -204
  228. package/references/minimem/src/cli/sync/daemon.ts +0 -407
  229. package/references/minimem/src/cli/sync/detection.ts +0 -138
  230. package/references/minimem/src/cli/sync/index.ts +0 -107
  231. package/references/minimem/src/cli/sync/operations.ts +0 -373
  232. package/references/minimem/src/cli/sync/registry.ts +0 -279
  233. package/references/minimem/src/cli/sync/state.ts +0 -355
  234. package/references/minimem/src/cli/sync/validation.ts +0 -206
  235. package/references/minimem/src/cli/sync/watcher.ts +0 -234
  236. package/references/minimem/src/cli/version.ts +0 -34
  237. package/references/minimem/src/core/index.ts +0 -9
  238. package/references/minimem/src/core/indexer.ts +0 -628
  239. package/references/minimem/src/core/searcher.ts +0 -221
  240. package/references/minimem/src/db/schema.ts +0 -183
  241. package/references/minimem/src/db/sqlite-vec.ts +0 -24
  242. package/references/minimem/src/embeddings/__tests__/embeddings.test.ts +0 -431
  243. package/references/minimem/src/embeddings/batch-gemini.ts +0 -392
  244. package/references/minimem/src/embeddings/batch-openai.ts +0 -409
  245. package/references/minimem/src/embeddings/embeddings.ts +0 -434
  246. package/references/minimem/src/index.ts +0 -109
  247. package/references/minimem/src/internal.ts +0 -299
  248. package/references/minimem/src/minimem.ts +0 -1276
  249. package/references/minimem/src/search/__tests__/hybrid.test.ts +0 -247
  250. package/references/minimem/src/search/graph.ts +0 -234
  251. package/references/minimem/src/search/hybrid.ts +0 -151
  252. package/references/minimem/src/search/search.ts +0 -256
  253. package/references/minimem/src/server/__tests__/mcp.test.ts +0 -341
  254. package/references/minimem/src/server/__tests__/tools.test.ts +0 -364
  255. package/references/minimem/src/server/mcp.ts +0 -326
  256. package/references/minimem/src/server/tools.ts +0 -720
  257. package/references/minimem/src/session.ts +0 -460
  258. package/references/minimem/tsconfig.json +0 -19
  259. package/references/minimem/tsup.config.ts +0 -26
  260. package/references/minimem/vitest.config.ts +0 -24
  261. package/references/sessionlog/.husky/pre-commit +0 -1
  262. package/references/sessionlog/.lintstagedrc.json +0 -4
  263. package/references/sessionlog/.prettierignore +0 -4
  264. package/references/sessionlog/.prettierrc.json +0 -11
  265. package/references/sessionlog/LICENSE +0 -21
  266. package/references/sessionlog/README.md +0 -453
  267. package/references/sessionlog/eslint.config.js +0 -58
  268. package/references/sessionlog/package-lock.json +0 -3672
  269. package/references/sessionlog/package.json +0 -65
  270. package/references/sessionlog/src/__tests__/agent-hooks.test.ts +0 -570
  271. package/references/sessionlog/src/__tests__/agent-registry.test.ts +0 -127
  272. package/references/sessionlog/src/__tests__/claude-code-hooks.test.ts +0 -225
  273. package/references/sessionlog/src/__tests__/claude-generator.test.ts +0 -46
  274. package/references/sessionlog/src/__tests__/commit-msg.test.ts +0 -86
  275. package/references/sessionlog/src/__tests__/cursor-agent.test.ts +0 -224
  276. package/references/sessionlog/src/__tests__/e2e-live.test.ts +0 -890
  277. package/references/sessionlog/src/__tests__/event-log.test.ts +0 -183
  278. package/references/sessionlog/src/__tests__/flush-sentinel.test.ts +0 -105
  279. package/references/sessionlog/src/__tests__/gemini-agent.test.ts +0 -375
  280. package/references/sessionlog/src/__tests__/git-hooks.test.ts +0 -78
  281. package/references/sessionlog/src/__tests__/hook-managers.test.ts +0 -121
  282. package/references/sessionlog/src/__tests__/lifecycle-tasks.test.ts +0 -759
  283. package/references/sessionlog/src/__tests__/opencode-agent.test.ts +0 -338
  284. package/references/sessionlog/src/__tests__/redaction.test.ts +0 -136
  285. package/references/sessionlog/src/__tests__/session-repo.test.ts +0 -353
  286. package/references/sessionlog/src/__tests__/session-store.test.ts +0 -166
  287. package/references/sessionlog/src/__tests__/setup-ccweb.test.ts +0 -466
  288. package/references/sessionlog/src/__tests__/skill-live.test.ts +0 -461
  289. package/references/sessionlog/src/__tests__/summarize.test.ts +0 -348
  290. package/references/sessionlog/src/__tests__/task-plan-e2e.test.ts +0 -610
  291. package/references/sessionlog/src/__tests__/task-plan-live.test.ts +0 -632
  292. package/references/sessionlog/src/__tests__/transcript-timestamp.test.ts +0 -121
  293. package/references/sessionlog/src/__tests__/types.test.ts +0 -166
  294. package/references/sessionlog/src/__tests__/utils.test.ts +0 -333
  295. package/references/sessionlog/src/__tests__/validation.test.ts +0 -103
  296. package/references/sessionlog/src/__tests__/worktree.test.ts +0 -57
  297. package/references/sessionlog/src/agent/agents/claude-code.ts +0 -1089
  298. package/references/sessionlog/src/agent/agents/cursor.ts +0 -361
  299. package/references/sessionlog/src/agent/agents/gemini-cli.ts +0 -632
  300. package/references/sessionlog/src/agent/agents/opencode.ts +0 -540
  301. package/references/sessionlog/src/agent/registry.ts +0 -143
  302. package/references/sessionlog/src/agent/session-types.ts +0 -113
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  304. package/references/sessionlog/src/cli.ts +0 -597
  305. package/references/sessionlog/src/commands/clean.ts +0 -133
  306. package/references/sessionlog/src/commands/disable.ts +0 -84
  307. package/references/sessionlog/src/commands/doctor.ts +0 -145
  308. package/references/sessionlog/src/commands/enable.ts +0 -202
  309. package/references/sessionlog/src/commands/explain.ts +0 -261
  310. package/references/sessionlog/src/commands/reset.ts +0 -105
  311. package/references/sessionlog/src/commands/resume.ts +0 -180
  312. package/references/sessionlog/src/commands/rewind.ts +0 -195
  313. package/references/sessionlog/src/commands/setup-ccweb.ts +0 -275
  314. package/references/sessionlog/src/commands/status.ts +0 -172
  315. package/references/sessionlog/src/config.ts +0 -165
  316. package/references/sessionlog/src/events/event-log.ts +0 -126
  317. package/references/sessionlog/src/git-operations.ts +0 -558
  318. package/references/sessionlog/src/hooks/git-hooks.ts +0 -165
  319. package/references/sessionlog/src/hooks/lifecycle.ts +0 -391
  320. package/references/sessionlog/src/index.ts +0 -650
  321. package/references/sessionlog/src/security/redaction.ts +0 -283
  322. package/references/sessionlog/src/session/state-machine.ts +0 -452
  323. package/references/sessionlog/src/store/checkpoint-store.ts +0 -509
  324. package/references/sessionlog/src/store/native-store.ts +0 -173
  325. package/references/sessionlog/src/store/provider-types.ts +0 -99
  326. package/references/sessionlog/src/store/session-store.ts +0 -266
  327. package/references/sessionlog/src/strategy/attribution.ts +0 -296
  328. package/references/sessionlog/src/strategy/common.ts +0 -207
  329. package/references/sessionlog/src/strategy/content-overlap.ts +0 -228
  330. package/references/sessionlog/src/strategy/manual-commit.ts +0 -988
  331. package/references/sessionlog/src/strategy/types.ts +0 -279
  332. package/references/sessionlog/src/summarize/claude-generator.ts +0 -115
  333. package/references/sessionlog/src/summarize/summarize.ts +0 -432
  334. package/references/sessionlog/src/types.ts +0 -508
  335. package/references/sessionlog/src/utils/chunk-files.ts +0 -49
  336. package/references/sessionlog/src/utils/commit-message.ts +0 -65
  337. package/references/sessionlog/src/utils/detect-agent.ts +0 -36
  338. package/references/sessionlog/src/utils/hook-managers.ts +0 -125
  339. package/references/sessionlog/src/utils/ide-tags.ts +0 -32
  340. package/references/sessionlog/src/utils/paths.ts +0 -79
  341. package/references/sessionlog/src/utils/preview-rewind.ts +0 -80
  342. package/references/sessionlog/src/utils/rewind-conflict.ts +0 -121
  343. package/references/sessionlog/src/utils/shadow-branch.ts +0 -109
  344. package/references/sessionlog/src/utils/string-utils.ts +0 -46
  345. package/references/sessionlog/src/utils/todo-extract.ts +0 -188
  346. package/references/sessionlog/src/utils/trailers.ts +0 -187
  347. package/references/sessionlog/src/utils/transcript-parse.ts +0 -177
  348. package/references/sessionlog/src/utils/transcript-timestamp.ts +0 -59
  349. package/references/sessionlog/src/utils/tree-ops.ts +0 -219
  350. package/references/sessionlog/src/utils/tty.ts +0 -72
  351. package/references/sessionlog/src/utils/validation.ts +0 -65
  352. package/references/sessionlog/src/utils/worktree.ts +0 -58
  353. package/references/sessionlog/src/wire-types.ts +0 -59
  354. package/references/sessionlog/templates/setup-env.sh +0 -153
  355. package/references/sessionlog/tsconfig.json +0 -18
  356. package/references/sessionlog/vitest.config.ts +0 -12
  357. package/references/skill-tree/.claude/settings.json +0 -6
  358. package/references/skill-tree/.sudocode/issues.jsonl +0 -19
  359. package/references/skill-tree/.sudocode/specs.jsonl +0 -3
  360. package/references/skill-tree/CLAUDE.md +0 -126
  361. package/references/skill-tree/README.md +0 -372
  362. package/references/skill-tree/docs/GAPS_v1.md +0 -221
  363. package/references/skill-tree/docs/INTEGRATION_PLAN.md +0 -467
  364. package/references/skill-tree/docs/TODOS.md +0 -91
  365. package/references/skill-tree/docs/anthropic_skill_guide.md +0 -1364
  366. package/references/skill-tree/docs/design/federated-skill-trees.md +0 -524
  367. package/references/skill-tree/docs/design/multi-agent-sync.md +0 -759
  368. package/references/skill-tree/docs/scraper/BRAINSTORM.md +0 -583
  369. package/references/skill-tree/docs/scraper/POC_PLAN.md +0 -420
  370. package/references/skill-tree/docs/scraper/README.md +0 -170
  371. package/references/skill-tree/examples/basic-usage.ts +0 -164
  372. package/references/skill-tree/package-lock.json +0 -1852
  373. package/references/skill-tree/package.json +0 -66
  374. package/references/skill-tree/scraper/README.md +0 -123
  375. package/references/skill-tree/scraper/docs/DESIGN.md +0 -683
  376. package/references/skill-tree/scraper/docs/PLAN.md +0 -336
  377. package/references/skill-tree/scraper/drizzle.config.ts +0 -10
  378. package/references/skill-tree/scraper/package-lock.json +0 -6329
  379. package/references/skill-tree/scraper/package.json +0 -68
  380. package/references/skill-tree/scraper/test/fixtures/invalid-skill/missing-description.md +0 -7
  381. package/references/skill-tree/scraper/test/fixtures/invalid-skill/missing-name.md +0 -7
  382. package/references/skill-tree/scraper/test/fixtures/minimal-skill/SKILL.md +0 -27
  383. package/references/skill-tree/scraper/test/fixtures/skill-json/SKILL.json +0 -21
  384. package/references/skill-tree/scraper/test/fixtures/skill-with-meta/SKILL.md +0 -54
  385. package/references/skill-tree/scraper/test/fixtures/skill-with-meta/_meta.json +0 -24
  386. package/references/skill-tree/scraper/test/fixtures/valid-skill/SKILL.md +0 -93
  387. package/references/skill-tree/scraper/test/fixtures/valid-skill/_meta.json +0 -22
  388. package/references/skill-tree/scraper/tsup.config.ts +0 -14
  389. package/references/skill-tree/scraper/vitest.config.ts +0 -17
  390. package/references/skill-tree/scripts/convert-to-vitest.ts +0 -166
  391. package/references/skill-tree/skills/skill-writer/SKILL.md +0 -339
  392. package/references/skill-tree/skills/skill-writer/references/examples.md +0 -326
  393. package/references/skill-tree/skills/skill-writer/references/patterns.md +0 -210
  394. package/references/skill-tree/skills/skill-writer/references/quality-checklist.md +0 -123
  395. package/references/skill-tree/test/run-all.ts +0 -106
  396. package/references/skill-tree/test/utils.ts +0 -128
  397. package/references/skill-tree/vitest.config.ts +0 -16
@@ -1,261 +0,0 @@
1
- /**
2
- * Explain Command
3
- *
4
- * Provides human-readable context about sessions, commits, and checkpoints.
5
- * This is the library implementation - consumers (CLI, IDE plugins) handle
6
- * their own output formatting and pager support.
7
- */
8
-
9
- import type { CheckpointID, CommittedMetadata, Summary, AgentType, TokenUsage } from '../types.js';
10
- import { CHECKPOINTS_BRANCH, checkpointIDPath } from '../types.js';
11
- import { git, catFile, lsTree } from '../git-operations.js';
12
- import { parseCheckpoint, parseAllSessions } from '../utils/trailers.js';
13
-
14
- // ============================================================================
15
- // Types
16
- // ============================================================================
17
-
18
- export interface CheckpointDetail {
19
- checkpointID: CheckpointID;
20
- sessionID: string;
21
- agent?: AgentType;
22
- strategy: string;
23
- createdAt: string;
24
- branch?: string;
25
- checkpointsCount: number;
26
- filesTouched: string[];
27
- tokenUsage?: TokenUsage;
28
- summary?: Summary;
29
- isTaskCheckpoint?: boolean;
30
- turnID?: string;
31
- transcriptIdentifierAtStart?: string;
32
- checkpointTranscriptStart: number;
33
- }
34
-
35
- export interface CheckpointListItem {
36
- checkpointID: CheckpointID;
37
- sessionID: string;
38
- message: string;
39
- date: string;
40
- isTaskCheckpoint: boolean;
41
- agent?: AgentType;
42
- sessionCount: number;
43
- sessionIDs: string[];
44
- }
45
-
46
- export interface ExplainOptions {
47
- cwd?: string;
48
- sessionFilter?: string;
49
- maxDepth?: number;
50
- searchAll?: boolean;
51
- }
52
-
53
- export interface CommitExplainResult {
54
- commitSHA: string;
55
- commitMessage: string;
56
- checkpointID: CheckpointID | null;
57
- detail: CheckpointDetail | null;
58
- }
59
-
60
- // ============================================================================
61
- // Public API
62
- // ============================================================================
63
-
64
- /**
65
- * List checkpoints on the current branch.
66
- * Optionally filtered by session ID prefix.
67
- */
68
- export async function listCheckpoints(options: ExplainOptions = {}): Promise<CheckpointListItem[]> {
69
- const cwd = options.cwd;
70
- const maxDepth = options.searchAll ? 0 : (options.maxDepth ?? 500);
71
-
72
- // Get commits on the current branch
73
- const logArgs = ['log', '--format=%H %s'];
74
- if (maxDepth > 0) logArgs.push(`-n`, `${maxDepth}`);
75
-
76
- let logOutput: string;
77
- try {
78
- logOutput = await git(logArgs, { cwd });
79
- } catch {
80
- return [];
81
- }
82
-
83
- const items: CheckpointListItem[] = [];
84
-
85
- for (const line of logOutput.split('\n')) {
86
- if (!line.trim()) continue;
87
-
88
- const spaceIdx = line.indexOf(' ');
89
- if (spaceIdx === -1) continue;
90
-
91
- const sha = line.slice(0, spaceIdx);
92
- const message = line.slice(spaceIdx + 1);
93
-
94
- // Get full commit message to check for trailers
95
- let fullMessage: string;
96
- try {
97
- fullMessage = await git(['log', '-1', '--format=%B', sha], { cwd });
98
- } catch {
99
- continue;
100
- }
101
-
102
- const [cpID, hasCp] = parseCheckpoint(fullMessage);
103
- if (!hasCp || !cpID) continue;
104
-
105
- const sessionIDs = parseAllSessions(fullMessage);
106
-
107
- // Apply session filter
108
- if (options.sessionFilter) {
109
- const hasMatch = sessionIDs.some((sid) => sid.startsWith(options.sessionFilter!));
110
- if (!hasMatch) continue;
111
- }
112
-
113
- // Get commit date
114
- let date: string;
115
- try {
116
- date = (await git(['log', '-1', '--format=%aI', sha], { cwd })).trim();
117
- } catch {
118
- date = '';
119
- }
120
-
121
- items.push({
122
- checkpointID: cpID,
123
- sessionID: sessionIDs[0] ?? '',
124
- message: message.trim(),
125
- date,
126
- isTaskCheckpoint: message.includes('[task]'),
127
- sessionCount: sessionIDs.length,
128
- sessionIDs,
129
- });
130
- }
131
-
132
- return items;
133
- }
134
-
135
- /**
136
- * Get detailed information about a specific checkpoint.
137
- */
138
- export async function getCheckpointDetail(
139
- checkpointID: CheckpointID,
140
- options: ExplainOptions = {},
141
- ): Promise<CheckpointDetail | null> {
142
- const cwd = options.cwd;
143
-
144
- // Try to read committed metadata from the checkpoints branch
145
- const metadataPath = `${checkpointIDPath(checkpointID)}/metadata.json`;
146
-
147
- try {
148
- const content = await catFile(`${CHECKPOINTS_BRANCH}:${metadataPath}`, cwd);
149
- const metadata = JSON.parse(content) as CommittedMetadata;
150
-
151
- return {
152
- checkpointID: metadata.checkpointID,
153
- sessionID: metadata.sessionID,
154
- agent: metadata.agent,
155
- strategy: metadata.strategy,
156
- createdAt: metadata.createdAt,
157
- branch: metadata.branch,
158
- checkpointsCount: metadata.checkpointsCount,
159
- filesTouched: metadata.filesTouched,
160
- tokenUsage: metadata.tokenUsage,
161
- summary: metadata.summary,
162
- isTaskCheckpoint: metadata.isTask,
163
- turnID: metadata.turnID,
164
- transcriptIdentifierAtStart: metadata.transcriptIdentifierAtStart,
165
- checkpointTranscriptStart: metadata.checkpointTranscriptStart,
166
- };
167
- } catch {
168
- return null;
169
- }
170
- }
171
-
172
- /**
173
- * Get the transcript content for a checkpoint.
174
- */
175
- export async function getCheckpointTranscript(
176
- checkpointID: CheckpointID,
177
- options: ExplainOptions = {},
178
- ): Promise<Buffer | null> {
179
- const cwd = options.cwd;
180
- const transcriptPath = `${checkpointIDPath(checkpointID)}/transcript`;
181
-
182
- try {
183
- const content = await catFile(`${CHECKPOINTS_BRANCH}:${transcriptPath}`, cwd);
184
- return Buffer.from(content, 'utf-8');
185
- } catch {
186
- return null;
187
- }
188
- }
189
-
190
- /**
191
- * Explain a specific commit by finding its associated checkpoint.
192
- */
193
- export async function explainCommit(
194
- commitRef: string,
195
- options: ExplainOptions = {},
196
- ): Promise<CommitExplainResult | null> {
197
- const cwd = options.cwd;
198
-
199
- let fullMessage: string;
200
- try {
201
- fullMessage = await git(['log', '-1', '--format=%B', commitRef], { cwd });
202
- } catch {
203
- return null;
204
- }
205
-
206
- const [cpID] = parseCheckpoint(fullMessage);
207
-
208
- let sha: string;
209
- try {
210
- sha = (await git(['rev-parse', commitRef], { cwd })).trim();
211
- } catch {
212
- return null;
213
- }
214
-
215
- const message = fullMessage.split('\n')[0] ?? '';
216
-
217
- let detail: CheckpointDetail | null = null;
218
- if (cpID) {
219
- detail = await getCheckpointDetail(cpID, options);
220
- }
221
-
222
- return {
223
- commitSHA: sha,
224
- commitMessage: message,
225
- checkpointID: cpID,
226
- detail,
227
- };
228
- }
229
-
230
- /**
231
- * Find a checkpoint by ID prefix (partial match).
232
- */
233
- export async function findCheckpointByPrefix(
234
- prefix: string,
235
- options: ExplainOptions = {},
236
- ): Promise<CheckpointID | null> {
237
- const cwd = options.cwd;
238
-
239
- // For full IDs, just return directly
240
- if (prefix.length === 12) return prefix as CheckpointID;
241
-
242
- // Need at least 2 chars for shard prefix
243
- if (prefix.length < 2) return null;
244
-
245
- const shardPrefix = prefix.slice(0, 2);
246
- const remainder = prefix.slice(2);
247
-
248
- try {
249
- const entries = await lsTree(CHECKPOINTS_BRANCH, shardPrefix, cwd);
250
-
251
- for (const entry of entries) {
252
- if (entry.name.startsWith(remainder)) {
253
- return `${shardPrefix}${entry.name}` as CheckpointID;
254
- }
255
- }
256
- } catch {
257
- // Shard doesn't exist
258
- }
259
-
260
- return null;
261
- }
@@ -1,105 +0,0 @@
1
- /**
2
- * Reset Command
3
- *
4
- * Deletes shadow branch and session state for the current HEAD.
5
- * More targeted than clean — only affects the current commit's sessions.
6
- */
7
-
8
- import type { SessionState } from '../types.js';
9
- import { getHead } from '../git-operations.js';
10
- import { createSessionStore } from '../store/session-store.js';
11
- import { createCheckpointStore } from '../store/checkpoint-store.js';
12
-
13
- // ============================================================================
14
- // Types
15
- // ============================================================================
16
-
17
- export interface ResetOptions {
18
- cwd?: string;
19
- /** Reset a specific session instead of all */
20
- sessionID?: string;
21
- /** Skip confirmation (for programmatic use) */
22
- force?: boolean;
23
- }
24
-
25
- export interface ResetResult {
26
- sessionsReset: string[];
27
- branchesDeleted: string[];
28
- errors: string[];
29
- }
30
-
31
- // ============================================================================
32
- // Implementation
33
- // ============================================================================
34
-
35
- /**
36
- * Reset shadow branches and session state for the current HEAD
37
- */
38
- export async function reset(options: ResetOptions = {}): Promise<ResetResult> {
39
- const cwd = options.cwd;
40
- const sessionStore = createSessionStore(cwd);
41
- const checkpointStore = createCheckpointStore(cwd);
42
- const head = await getHead(cwd);
43
-
44
- const errors: string[] = [];
45
- const sessionsReset: string[] = [];
46
- const branchesDeleted: string[] = [];
47
-
48
- const sessions = await sessionStore.list();
49
-
50
- // Find sessions matching the current HEAD
51
- let matchingSessions: SessionState[];
52
-
53
- if (options.sessionID) {
54
- matchingSessions = sessions.filter((s) => s.sessionID === options.sessionID);
55
- if (matchingSessions.length === 0) {
56
- errors.push(`Session not found: ${options.sessionID}`);
57
- return { sessionsReset, branchesDeleted, errors };
58
- }
59
- } else {
60
- matchingSessions = sessions.filter(
61
- (s) => s.baseCommit === head || head.startsWith(s.baseCommit),
62
- );
63
- }
64
-
65
- // Safety check: warn about active sessions
66
- if (!options.force) {
67
- const activeSessions = matchingSessions.filter((s) => s.phase === 'active');
68
- if (activeSessions.length > 0) {
69
- errors.push(
70
- `${activeSessions.length} active session(s) found. Use --force to reset active sessions.`,
71
- );
72
- return { sessionsReset, branchesDeleted, errors };
73
- }
74
- }
75
-
76
- for (const session of matchingSessions) {
77
- // Delete shadow branch
78
- if (session.baseCommit) {
79
- const branchName = checkpointStore.getShadowBranchName(
80
- session.baseCommit,
81
- session.worktreeID,
82
- );
83
- try {
84
- await checkpointStore.deleteShadowBranch(branchName);
85
- branchesDeleted.push(branchName);
86
- } catch (e) {
87
- errors.push(
88
- `Failed to delete branch ${branchName}: ${e instanceof Error ? e.message : String(e)}`,
89
- );
90
- }
91
- }
92
-
93
- // Delete session state
94
- try {
95
- await sessionStore.delete(session.sessionID);
96
- sessionsReset.push(session.sessionID);
97
- } catch (e) {
98
- errors.push(
99
- `Failed to delete session ${session.sessionID}: ${e instanceof Error ? e.message : String(e)}`,
100
- );
101
- }
102
- }
103
-
104
- return { sessionsReset, branchesDeleted, errors };
105
- }
@@ -1,180 +0,0 @@
1
- /**
2
- * Resume Command
3
- *
4
- * Library implementation for resuming agent sessions from branches.
5
- * Handles branch checkout, session discovery from commit trailers,
6
- * and transcript restoration.
7
- */
8
-
9
- import type { CheckpointID } from '../types.js';
10
- import { git, refExists } from '../git-operations.js';
11
- import { parseCheckpoint, parseAllSessions } from '../utils/trailers.js';
12
-
13
- // ============================================================================
14
- // Types
15
- // ============================================================================
16
-
17
- export interface ResumeInfo {
18
- branchName: string;
19
- sessionID: string;
20
- sessionIDs: string[];
21
- checkpointID: CheckpointID | null;
22
- resumeCommand: string;
23
- commitSHA: string;
24
- commitMessage: string;
25
- needsReset: boolean;
26
- resetTargetSHA?: string;
27
- }
28
-
29
- export interface ResumeOptions {
30
- cwd?: string;
31
- force?: boolean;
32
- }
33
-
34
- export interface ResumeResult {
35
- success: boolean;
36
- info?: ResumeInfo;
37
- error?: string;
38
- }
39
-
40
- // ============================================================================
41
- // Public API
42
- // ============================================================================
43
-
44
- /**
45
- * Discover resume information for a branch without performing any actions.
46
- * This is useful for preview/dry-run scenarios.
47
- */
48
- export async function discoverResumeInfo(
49
- branchName: string,
50
- options: ResumeOptions = {},
51
- ): Promise<ResumeResult> {
52
- const cwd = options.cwd;
53
-
54
- // Check if branch exists locally
55
- const localExists = await refExists(`refs/heads/${branchName}`, cwd);
56
- if (!localExists) {
57
- // Check remote
58
- const remoteExists = await refExists(`refs/remotes/origin/${branchName}`, cwd);
59
- if (!remoteExists) {
60
- return {
61
- success: false,
62
- error: `Branch '${branchName}' not found locally or on origin`,
63
- };
64
- }
65
-
66
- return {
67
- success: false,
68
- error: `Branch '${branchName}' exists on origin but not locally. Fetch it first.`,
69
- };
70
- }
71
-
72
- // Find the most recent commit with a checkpoint trailer
73
- const info = await findSessionInfo(branchName, cwd);
74
- if (!info) {
75
- return {
76
- success: false,
77
- error: `No checkpointed session found on branch '${branchName}'`,
78
- };
79
- }
80
-
81
- return { success: true, info };
82
- }
83
-
84
- /**
85
- * Get a list of branches that have checkpointed sessions.
86
- */
87
- export async function listResumableBranches(
88
- options: ResumeOptions = {},
89
- ): Promise<Array<{ branch: string; sessionID: string; lastCommit: string }>> {
90
- const cwd = options.cwd;
91
- const results: Array<{ branch: string; sessionID: string; lastCommit: string }> = [];
92
-
93
- let branchOutput: string;
94
- try {
95
- branchOutput = await git(['branch', '--format=%(refname:short)'], { cwd });
96
- } catch {
97
- return [];
98
- }
99
-
100
- for (const branch of branchOutput.split('\n')) {
101
- const trimmed = branch.trim();
102
- if (!trimmed) continue;
103
-
104
- // Get the last few commits to check for checkpoint trailers
105
- try {
106
- const logOutput = await git(['log', '-10', '--format=%H', trimmed], { cwd });
107
-
108
- for (const sha of logOutput.split('\n')) {
109
- if (!sha.trim()) continue;
110
-
111
- const fullMessage = await git(['log', '-1', '--format=%B', sha.trim()], { cwd });
112
-
113
- const [cpID, hasCp] = parseCheckpoint(fullMessage);
114
- if (hasCp && cpID) {
115
- const sessionIDs = parseAllSessions(fullMessage);
116
- if (sessionIDs.length > 0) {
117
- results.push({
118
- branch: trimmed,
119
- sessionID: sessionIDs[0],
120
- lastCommit: sha.trim().slice(0, 7),
121
- });
122
- break; // Only report first match per branch
123
- }
124
- }
125
- }
126
- } catch {
127
- continue;
128
- }
129
- }
130
-
131
- return results;
132
- }
133
-
134
- // ============================================================================
135
- // Internal Helpers
136
- // ============================================================================
137
-
138
- async function findSessionInfo(branchName: string, cwd?: string): Promise<ResumeInfo | null> {
139
- // Walk commits on the branch looking for one with a checkpoint trailer
140
- let logOutput: string;
141
- try {
142
- logOutput = await git(['log', '-50', '--format=%H', branchName], { cwd });
143
- } catch {
144
- return null;
145
- }
146
-
147
- const shas = logOutput.split('\n').filter(Boolean);
148
- for (let i = 0; i < shas.length; i++) {
149
- const sha = shas[i].trim();
150
- if (!sha) continue;
151
-
152
- let fullMessage: string;
153
- try {
154
- fullMessage = await git(['log', '-1', '--format=%B', sha], { cwd });
155
- } catch {
156
- continue;
157
- }
158
-
159
- const [cpID, hasCp] = parseCheckpoint(fullMessage);
160
- if (!hasCp || !cpID) continue;
161
-
162
- const sessionIDs = parseAllSessions(fullMessage);
163
- const message = fullMessage.split('\n')[0] ?? '';
164
- const needsReset = i > 0; // If not the tip commit, needs reset
165
-
166
- return {
167
- branchName,
168
- sessionID: sessionIDs[0] ?? '',
169
- sessionIDs,
170
- checkpointID: cpID,
171
- resumeCommand: '', // To be filled by consumer with agent-specific command
172
- commitSHA: sha,
173
- commitMessage: message,
174
- needsReset,
175
- resetTargetSHA: needsReset ? sha : undefined,
176
- };
177
- }
178
-
179
- return null;
180
- }