cognitive-core 0.2.0 → 0.2.2

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Files changed (397) hide show
  1. package/.claude/settings.json +111 -2
  2. package/.sessionlog/settings.json +4 -0
  3. package/dist/atlas.d.ts +10 -0
  4. package/dist/atlas.d.ts.map +1 -1
  5. package/dist/atlas.js +65 -0
  6. package/dist/atlas.js.map +1 -1
  7. package/dist/index.d.ts +1 -1
  8. package/dist/index.d.ts.map +1 -1
  9. package/dist/index.js +5 -1
  10. package/dist/index.js.map +1 -1
  11. package/dist/learning/index.d.ts +1 -1
  12. package/dist/learning/index.d.ts.map +1 -1
  13. package/dist/learning/index.js.map +1 -1
  14. package/dist/learning/pipeline.d.ts +4 -31
  15. package/dist/learning/pipeline.d.ts.map +1 -1
  16. package/dist/learning/pipeline.js +12 -64
  17. package/dist/learning/pipeline.js.map +1 -1
  18. package/dist/learning/unified-pipeline.d.ts +30 -0
  19. package/dist/learning/unified-pipeline.d.ts.map +1 -1
  20. package/dist/learning/unified-pipeline.js +207 -0
  21. package/dist/learning/unified-pipeline.js.map +1 -1
  22. package/dist/memory/candidate-retrieval.d.ts.map +1 -1
  23. package/dist/memory/candidate-retrieval.js +3 -1
  24. package/dist/memory/candidate-retrieval.js.map +1 -1
  25. package/dist/memory/curated-loader.d.ts +21 -4
  26. package/dist/memory/curated-loader.d.ts.map +1 -1
  27. package/dist/memory/curated-loader.js +53 -16
  28. package/dist/memory/curated-loader.js.map +1 -1
  29. package/dist/memory/index.d.ts +2 -1
  30. package/dist/memory/index.d.ts.map +1 -1
  31. package/dist/memory/index.js +3 -1
  32. package/dist/memory/index.js.map +1 -1
  33. package/dist/memory/playbook.d.ts +6 -0
  34. package/dist/memory/playbook.d.ts.map +1 -1
  35. package/dist/memory/playbook.js +15 -0
  36. package/dist/memory/playbook.js.map +1 -1
  37. package/dist/memory/source-resolver.d.ts +120 -0
  38. package/dist/memory/source-resolver.d.ts.map +1 -0
  39. package/dist/memory/source-resolver.js +300 -0
  40. package/dist/memory/source-resolver.js.map +1 -0
  41. package/dist/types/config.d.ts +141 -0
  42. package/dist/types/config.d.ts.map +1 -1
  43. package/dist/types/config.js +40 -0
  44. package/dist/types/config.js.map +1 -1
  45. package/dist/types/index.d.ts +1 -1
  46. package/dist/types/index.d.ts.map +1 -1
  47. package/dist/types/index.js +1 -1
  48. package/dist/types/index.js.map +1 -1
  49. package/dist/utils/error-classifier.js +8 -8
  50. package/dist/utils/error-classifier.js.map +1 -1
  51. package/dist/workspace/efficacy-toolkit.d.ts +164 -0
  52. package/dist/workspace/efficacy-toolkit.d.ts.map +1 -0
  53. package/dist/workspace/efficacy-toolkit.js +281 -0
  54. package/dist/workspace/efficacy-toolkit.js.map +1 -0
  55. package/dist/workspace/index.d.ts +2 -1
  56. package/dist/workspace/index.d.ts.map +1 -1
  57. package/dist/workspace/index.js +3 -1
  58. package/dist/workspace/index.js.map +1 -1
  59. package/dist/workspace/templates/index.d.ts +3 -0
  60. package/dist/workspace/templates/index.d.ts.map +1 -1
  61. package/dist/workspace/templates/index.js +6 -0
  62. package/dist/workspace/templates/index.js.map +1 -1
  63. package/dist/workspace/templates/playbook-decay-detection.d.ts +46 -0
  64. package/dist/workspace/templates/playbook-decay-detection.d.ts.map +1 -0
  65. package/dist/workspace/templates/playbook-decay-detection.js +197 -0
  66. package/dist/workspace/templates/playbook-decay-detection.js.map +1 -0
  67. package/dist/workspace/templates/playbook-efficacy-audit.d.ts +46 -0
  68. package/dist/workspace/templates/playbook-efficacy-audit.d.ts.map +1 -0
  69. package/dist/workspace/templates/playbook-efficacy-audit.js +160 -0
  70. package/dist/workspace/templates/playbook-efficacy-audit.js.map +1 -0
  71. package/dist/workspace/templates/playbook-lifecycle-review.d.ts +51 -0
  72. package/dist/workspace/templates/playbook-lifecycle-review.d.ts.map +1 -0
  73. package/dist/workspace/templates/playbook-lifecycle-review.js +187 -0
  74. package/dist/workspace/templates/playbook-lifecycle-review.js.map +1 -0
  75. package/dist/workspace/types.d.ts +12 -54
  76. package/dist/workspace/types.d.ts.map +1 -1
  77. package/dist/workspace/types.js.map +1 -1
  78. package/package.json +8 -2
  79. package/playbooks/compound-engineering/adversarial-review.json +51 -0
  80. package/playbooks/compound-engineering/agent-native-architecture.json +59 -0
  81. package/playbooks/compound-engineering/agent-native-review.json +54 -0
  82. package/playbooks/compound-engineering/api-contract-review.json +52 -0
  83. package/playbooks/compound-engineering/brainstorm-requirements.json +55 -0
  84. package/playbooks/compound-engineering/bug-reproduction.json +62 -0
  85. package/playbooks/compound-engineering/confidence-calibration.json +49 -0
  86. package/playbooks/compound-engineering/correctness-review.json +49 -0
  87. package/playbooks/compound-engineering/data-migration-safety.json +59 -0
  88. package/playbooks/compound-engineering/deployment-verification.json +63 -0
  89. package/playbooks/compound-engineering/error-recovery-patterns.json +53 -0
  90. package/playbooks/compound-engineering/implementation-planning.json +64 -0
  91. package/playbooks/compound-engineering/issue-pattern-analysis.json +53 -0
  92. package/playbooks/compound-engineering/knowledge-compounding.json +63 -0
  93. package/playbooks/compound-engineering/learnings-research.json +54 -0
  94. package/playbooks/compound-engineering/maintainability-review.json +49 -0
  95. package/playbooks/compound-engineering/performance-review.json +54 -0
  96. package/playbooks/compound-engineering/plan-adversarial-review.json +56 -0
  97. package/playbooks/compound-engineering/plan-feasibility-review.json +56 -0
  98. package/playbooks/compound-engineering/project-standards-review.json +52 -0
  99. package/playbooks/compound-engineering/reliability-review.json +53 -0
  100. package/playbooks/compound-engineering/review-orchestration.json +64 -0
  101. package/playbooks/compound-engineering/security-review.json +54 -0
  102. package/playbooks/compound-engineering/systematic-execution.json +64 -0
  103. package/playbooks/compound-engineering/testing-review.json +50 -0
  104. package/src/atlas.ts +96 -0
  105. package/src/index.ts +27 -0
  106. package/src/learning/index.ts +1 -0
  107. package/src/learning/unified-pipeline.ts +271 -1
  108. package/src/memory/candidate-retrieval.ts +2 -1
  109. package/src/memory/curated-loader.ts +69 -16
  110. package/src/memory/index.ts +16 -0
  111. package/src/memory/playbook.ts +19 -0
  112. package/src/memory/source-resolver.ts +422 -0
  113. package/src/types/config.ts +46 -0
  114. package/src/types/index.ts +4 -0
  115. package/src/utils/error-classifier.ts +8 -8
  116. package/src/workspace/efficacy-toolkit.ts +496 -0
  117. package/src/workspace/index.ts +29 -0
  118. package/src/workspace/templates/index.ts +24 -0
  119. package/src/workspace/templates/playbook-decay-detection.ts +272 -0
  120. package/src/workspace/templates/playbook-efficacy-audit.ts +246 -0
  121. package/src/workspace/templates/playbook-lifecycle-review.ts +274 -0
  122. package/src/workspace/types.ts +22 -78
  123. package/tests/fixtures/behavioral-trajectories.ts +210 -0
  124. package/tests/integration/curated-sources-e2e.test.ts +502 -0
  125. package/tests/integration/pipeline-data-correctness.test.ts +794 -0
  126. package/tests/learning/meta-learner.test.ts +418 -0
  127. package/tests/learning/pipeline-memory-updates.test.ts +721 -0
  128. package/tests/learning/unified-pipeline-efficacy.test.ts +232 -0
  129. package/tests/memory/candidate-retrieval.test.ts +167 -0
  130. package/tests/memory/compound-engineering-seed.test.ts +338 -0
  131. package/tests/memory/curated-loader-extended.test.ts +225 -0
  132. package/tests/memory/meta.test.ts +399 -0
  133. package/tests/memory/playbook-quality-validation.test.ts +430 -0
  134. package/tests/memory/source-resolver.test.ts +700 -0
  135. package/tests/search/evaluator.test.ts +257 -0
  136. package/tests/search/verification-runner.test.ts +357 -0
  137. package/tests/utils/error-classifier.test.ts +149 -0
  138. package/tests/utils/trajectory-helpers.test.ts +163 -0
  139. package/tests/workspace/efficacy-toolkit.test.ts +404 -0
  140. package/tests/workspace/templates/playbook-efficacy.test.ts +377 -0
  141. package/.claude/settings.local.json +0 -11
  142. package/dist/learning/llm-extractor.d.ts +0 -88
  143. package/dist/learning/llm-extractor.d.ts.map +0 -1
  144. package/dist/learning/llm-extractor.js +0 -372
  145. package/dist/learning/llm-extractor.js.map +0 -1
  146. package/dist/learning/loop-coordinator.d.ts +0 -61
  147. package/dist/learning/loop-coordinator.d.ts.map +0 -1
  148. package/dist/learning/loop-coordinator.js +0 -96
  149. package/dist/learning/loop-coordinator.js.map +0 -1
  150. package/references/agent-workspace/CLAUDE.md +0 -74
  151. package/references/agent-workspace/README.md +0 -587
  152. package/references/agent-workspace/media/banner.png +0 -0
  153. package/references/agent-workspace/package-lock.json +0 -2061
  154. package/references/agent-workspace/package.json +0 -54
  155. package/references/agent-workspace/src/handle.ts +0 -122
  156. package/references/agent-workspace/src/index.ts +0 -32
  157. package/references/agent-workspace/src/manager.ts +0 -102
  158. package/references/agent-workspace/src/readers/json.ts +0 -71
  159. package/references/agent-workspace/src/readers/markdown.ts +0 -37
  160. package/references/agent-workspace/src/readers/raw.ts +0 -27
  161. package/references/agent-workspace/src/types.ts +0 -68
  162. package/references/agent-workspace/src/validation.ts +0 -93
  163. package/references/agent-workspace/src/writers/json.ts +0 -17
  164. package/references/agent-workspace/src/writers/markdown.ts +0 -27
  165. package/references/agent-workspace/src/writers/raw.ts +0 -22
  166. package/references/agent-workspace/tests/errors.test.ts +0 -652
  167. package/references/agent-workspace/tests/handle.test.ts +0 -144
  168. package/references/agent-workspace/tests/manager.test.ts +0 -124
  169. package/references/agent-workspace/tests/readers.test.ts +0 -205
  170. package/references/agent-workspace/tests/validation.test.ts +0 -196
  171. package/references/agent-workspace/tests/writers.test.ts +0 -108
  172. package/references/agent-workspace/tsconfig.json +0 -20
  173. package/references/agent-workspace/tsup.config.ts +0 -9
  174. package/references/minimem/.claude/settings.json +0 -7
  175. package/references/minimem/.sudocode/issues.jsonl +0 -18
  176. package/references/minimem/.sudocode/specs.jsonl +0 -1
  177. package/references/minimem/CLAUDE.md +0 -310
  178. package/references/minimem/README.md +0 -556
  179. package/references/minimem/claude-plugin/.claude-plugin/plugin.json +0 -10
  180. package/references/minimem/claude-plugin/.mcp.json +0 -7
  181. package/references/minimem/claude-plugin/README.md +0 -158
  182. package/references/minimem/claude-plugin/commands/recall.md +0 -47
  183. package/references/minimem/claude-plugin/commands/remember.md +0 -41
  184. package/references/minimem/claude-plugin/hooks/__tests__/hooks.test.ts +0 -272
  185. package/references/minimem/claude-plugin/hooks/hooks.json +0 -27
  186. package/references/minimem/claude-plugin/hooks/session-end.sh +0 -86
  187. package/references/minimem/claude-plugin/hooks/session-start.sh +0 -85
  188. package/references/minimem/claude-plugin/skills/memory/SKILL.md +0 -108
  189. package/references/minimem/package-lock.json +0 -5373
  190. package/references/minimem/package.json +0 -60
  191. package/references/minimem/scripts/postbuild.js +0 -35
  192. package/references/minimem/src/__tests__/edge-cases.test.ts +0 -371
  193. package/references/minimem/src/__tests__/errors.test.ts +0 -265
  194. package/references/minimem/src/__tests__/helpers.ts +0 -199
  195. package/references/minimem/src/__tests__/internal.test.ts +0 -407
  196. package/references/minimem/src/__tests__/knowledge.test.ts +0 -287
  197. package/references/minimem/src/__tests__/minimem.integration.test.ts +0 -1127
  198. package/references/minimem/src/__tests__/session.test.ts +0 -190
  199. package/references/minimem/src/cli/__tests__/commands.test.ts +0 -759
  200. package/references/minimem/src/cli/commands/__tests__/conflicts.test.ts +0 -141
  201. package/references/minimem/src/cli/commands/append.ts +0 -76
  202. package/references/minimem/src/cli/commands/config.ts +0 -262
  203. package/references/minimem/src/cli/commands/conflicts.ts +0 -413
  204. package/references/minimem/src/cli/commands/daemon.ts +0 -169
  205. package/references/minimem/src/cli/commands/index.ts +0 -12
  206. package/references/minimem/src/cli/commands/init.ts +0 -88
  207. package/references/minimem/src/cli/commands/mcp.ts +0 -177
  208. package/references/minimem/src/cli/commands/push-pull.ts +0 -213
  209. package/references/minimem/src/cli/commands/search.ts +0 -158
  210. package/references/minimem/src/cli/commands/status.ts +0 -84
  211. package/references/minimem/src/cli/commands/sync-init.ts +0 -290
  212. package/references/minimem/src/cli/commands/sync.ts +0 -70
  213. package/references/minimem/src/cli/commands/upsert.ts +0 -197
  214. package/references/minimem/src/cli/config.ts +0 -584
  215. package/references/minimem/src/cli/index.ts +0 -264
  216. package/references/minimem/src/cli/shared.ts +0 -161
  217. package/references/minimem/src/cli/sync/__tests__/central.test.ts +0 -152
  218. package/references/minimem/src/cli/sync/__tests__/conflicts.test.ts +0 -209
  219. package/references/minimem/src/cli/sync/__tests__/daemon.test.ts +0 -118
  220. package/references/minimem/src/cli/sync/__tests__/detection.test.ts +0 -207
  221. package/references/minimem/src/cli/sync/__tests__/integration.test.ts +0 -476
  222. package/references/minimem/src/cli/sync/__tests__/registry.test.ts +0 -363
  223. package/references/minimem/src/cli/sync/__tests__/state.test.ts +0 -255
  224. package/references/minimem/src/cli/sync/__tests__/validation.test.ts +0 -193
  225. package/references/minimem/src/cli/sync/__tests__/watcher.test.ts +0 -178
  226. package/references/minimem/src/cli/sync/central.ts +0 -292
  227. package/references/minimem/src/cli/sync/conflicts.ts +0 -204
  228. package/references/minimem/src/cli/sync/daemon.ts +0 -407
  229. package/references/minimem/src/cli/sync/detection.ts +0 -138
  230. package/references/minimem/src/cli/sync/index.ts +0 -107
  231. package/references/minimem/src/cli/sync/operations.ts +0 -373
  232. package/references/minimem/src/cli/sync/registry.ts +0 -279
  233. package/references/minimem/src/cli/sync/state.ts +0 -355
  234. package/references/minimem/src/cli/sync/validation.ts +0 -206
  235. package/references/minimem/src/cli/sync/watcher.ts +0 -234
  236. package/references/minimem/src/cli/version.ts +0 -34
  237. package/references/minimem/src/core/index.ts +0 -9
  238. package/references/minimem/src/core/indexer.ts +0 -628
  239. package/references/minimem/src/core/searcher.ts +0 -221
  240. package/references/minimem/src/db/schema.ts +0 -183
  241. package/references/minimem/src/db/sqlite-vec.ts +0 -24
  242. package/references/minimem/src/embeddings/__tests__/embeddings.test.ts +0 -431
  243. package/references/minimem/src/embeddings/batch-gemini.ts +0 -392
  244. package/references/minimem/src/embeddings/batch-openai.ts +0 -409
  245. package/references/minimem/src/embeddings/embeddings.ts +0 -434
  246. package/references/minimem/src/index.ts +0 -109
  247. package/references/minimem/src/internal.ts +0 -299
  248. package/references/minimem/src/minimem.ts +0 -1276
  249. package/references/minimem/src/search/__tests__/hybrid.test.ts +0 -247
  250. package/references/minimem/src/search/graph.ts +0 -234
  251. package/references/minimem/src/search/hybrid.ts +0 -151
  252. package/references/minimem/src/search/search.ts +0 -256
  253. package/references/minimem/src/server/__tests__/mcp.test.ts +0 -341
  254. package/references/minimem/src/server/__tests__/tools.test.ts +0 -364
  255. package/references/minimem/src/server/mcp.ts +0 -326
  256. package/references/minimem/src/server/tools.ts +0 -720
  257. package/references/minimem/src/session.ts +0 -460
  258. package/references/minimem/tsconfig.json +0 -19
  259. package/references/minimem/tsup.config.ts +0 -26
  260. package/references/minimem/vitest.config.ts +0 -24
  261. package/references/sessionlog/.husky/pre-commit +0 -1
  262. package/references/sessionlog/.lintstagedrc.json +0 -4
  263. package/references/sessionlog/.prettierignore +0 -4
  264. package/references/sessionlog/.prettierrc.json +0 -11
  265. package/references/sessionlog/LICENSE +0 -21
  266. package/references/sessionlog/README.md +0 -453
  267. package/references/sessionlog/eslint.config.js +0 -58
  268. package/references/sessionlog/package-lock.json +0 -3672
  269. package/references/sessionlog/package.json +0 -65
  270. package/references/sessionlog/src/__tests__/agent-hooks.test.ts +0 -570
  271. package/references/sessionlog/src/__tests__/agent-registry.test.ts +0 -127
  272. package/references/sessionlog/src/__tests__/claude-code-hooks.test.ts +0 -225
  273. package/references/sessionlog/src/__tests__/claude-generator.test.ts +0 -46
  274. package/references/sessionlog/src/__tests__/commit-msg.test.ts +0 -86
  275. package/references/sessionlog/src/__tests__/cursor-agent.test.ts +0 -224
  276. package/references/sessionlog/src/__tests__/e2e-live.test.ts +0 -890
  277. package/references/sessionlog/src/__tests__/event-log.test.ts +0 -183
  278. package/references/sessionlog/src/__tests__/flush-sentinel.test.ts +0 -105
  279. package/references/sessionlog/src/__tests__/gemini-agent.test.ts +0 -375
  280. package/references/sessionlog/src/__tests__/git-hooks.test.ts +0 -78
  281. package/references/sessionlog/src/__tests__/hook-managers.test.ts +0 -121
  282. package/references/sessionlog/src/__tests__/lifecycle-tasks.test.ts +0 -759
  283. package/references/sessionlog/src/__tests__/opencode-agent.test.ts +0 -338
  284. package/references/sessionlog/src/__tests__/redaction.test.ts +0 -136
  285. package/references/sessionlog/src/__tests__/session-repo.test.ts +0 -353
  286. package/references/sessionlog/src/__tests__/session-store.test.ts +0 -166
  287. package/references/sessionlog/src/__tests__/setup-ccweb.test.ts +0 -466
  288. package/references/sessionlog/src/__tests__/skill-live.test.ts +0 -461
  289. package/references/sessionlog/src/__tests__/summarize.test.ts +0 -348
  290. package/references/sessionlog/src/__tests__/task-plan-e2e.test.ts +0 -610
  291. package/references/sessionlog/src/__tests__/task-plan-live.test.ts +0 -632
  292. package/references/sessionlog/src/__tests__/transcript-timestamp.test.ts +0 -121
  293. package/references/sessionlog/src/__tests__/types.test.ts +0 -166
  294. package/references/sessionlog/src/__tests__/utils.test.ts +0 -333
  295. package/references/sessionlog/src/__tests__/validation.test.ts +0 -103
  296. package/references/sessionlog/src/__tests__/worktree.test.ts +0 -57
  297. package/references/sessionlog/src/agent/agents/claude-code.ts +0 -1089
  298. package/references/sessionlog/src/agent/agents/cursor.ts +0 -361
  299. package/references/sessionlog/src/agent/agents/gemini-cli.ts +0 -632
  300. package/references/sessionlog/src/agent/agents/opencode.ts +0 -540
  301. package/references/sessionlog/src/agent/registry.ts +0 -143
  302. package/references/sessionlog/src/agent/session-types.ts +0 -113
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  304. package/references/sessionlog/src/cli.ts +0 -597
  305. package/references/sessionlog/src/commands/clean.ts +0 -133
  306. package/references/sessionlog/src/commands/disable.ts +0 -84
  307. package/references/sessionlog/src/commands/doctor.ts +0 -145
  308. package/references/sessionlog/src/commands/enable.ts +0 -202
  309. package/references/sessionlog/src/commands/explain.ts +0 -261
  310. package/references/sessionlog/src/commands/reset.ts +0 -105
  311. package/references/sessionlog/src/commands/resume.ts +0 -180
  312. package/references/sessionlog/src/commands/rewind.ts +0 -195
  313. package/references/sessionlog/src/commands/setup-ccweb.ts +0 -275
  314. package/references/sessionlog/src/commands/status.ts +0 -172
  315. package/references/sessionlog/src/config.ts +0 -165
  316. package/references/sessionlog/src/events/event-log.ts +0 -126
  317. package/references/sessionlog/src/git-operations.ts +0 -558
  318. package/references/sessionlog/src/hooks/git-hooks.ts +0 -165
  319. package/references/sessionlog/src/hooks/lifecycle.ts +0 -391
  320. package/references/sessionlog/src/index.ts +0 -650
  321. package/references/sessionlog/src/security/redaction.ts +0 -283
  322. package/references/sessionlog/src/session/state-machine.ts +0 -452
  323. package/references/sessionlog/src/store/checkpoint-store.ts +0 -509
  324. package/references/sessionlog/src/store/native-store.ts +0 -173
  325. package/references/sessionlog/src/store/provider-types.ts +0 -99
  326. package/references/sessionlog/src/store/session-store.ts +0 -266
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  328. package/references/sessionlog/src/strategy/common.ts +0 -207
  329. package/references/sessionlog/src/strategy/content-overlap.ts +0 -228
  330. package/references/sessionlog/src/strategy/manual-commit.ts +0 -988
  331. package/references/sessionlog/src/strategy/types.ts +0 -279
  332. package/references/sessionlog/src/summarize/claude-generator.ts +0 -115
  333. package/references/sessionlog/src/summarize/summarize.ts +0 -432
  334. package/references/sessionlog/src/types.ts +0 -508
  335. package/references/sessionlog/src/utils/chunk-files.ts +0 -49
  336. package/references/sessionlog/src/utils/commit-message.ts +0 -65
  337. package/references/sessionlog/src/utils/detect-agent.ts +0 -36
  338. package/references/sessionlog/src/utils/hook-managers.ts +0 -125
  339. package/references/sessionlog/src/utils/ide-tags.ts +0 -32
  340. package/references/sessionlog/src/utils/paths.ts +0 -79
  341. package/references/sessionlog/src/utils/preview-rewind.ts +0 -80
  342. package/references/sessionlog/src/utils/rewind-conflict.ts +0 -121
  343. package/references/sessionlog/src/utils/shadow-branch.ts +0 -109
  344. package/references/sessionlog/src/utils/string-utils.ts +0 -46
  345. package/references/sessionlog/src/utils/todo-extract.ts +0 -188
  346. package/references/sessionlog/src/utils/trailers.ts +0 -187
  347. package/references/sessionlog/src/utils/transcript-parse.ts +0 -177
  348. package/references/sessionlog/src/utils/transcript-timestamp.ts +0 -59
  349. package/references/sessionlog/src/utils/tree-ops.ts +0 -219
  350. package/references/sessionlog/src/utils/tty.ts +0 -72
  351. package/references/sessionlog/src/utils/validation.ts +0 -65
  352. package/references/sessionlog/src/utils/worktree.ts +0 -58
  353. package/references/sessionlog/src/wire-types.ts +0 -59
  354. package/references/sessionlog/templates/setup-env.sh +0 -153
  355. package/references/sessionlog/tsconfig.json +0 -18
  356. package/references/sessionlog/vitest.config.ts +0 -12
  357. package/references/skill-tree/.claude/settings.json +0 -6
  358. package/references/skill-tree/.sudocode/issues.jsonl +0 -19
  359. package/references/skill-tree/.sudocode/specs.jsonl +0 -3
  360. package/references/skill-tree/CLAUDE.md +0 -126
  361. package/references/skill-tree/README.md +0 -372
  362. package/references/skill-tree/docs/GAPS_v1.md +0 -221
  363. package/references/skill-tree/docs/INTEGRATION_PLAN.md +0 -467
  364. package/references/skill-tree/docs/TODOS.md +0 -91
  365. package/references/skill-tree/docs/anthropic_skill_guide.md +0 -1364
  366. package/references/skill-tree/docs/design/federated-skill-trees.md +0 -524
  367. package/references/skill-tree/docs/design/multi-agent-sync.md +0 -759
  368. package/references/skill-tree/docs/scraper/BRAINSTORM.md +0 -583
  369. package/references/skill-tree/docs/scraper/POC_PLAN.md +0 -420
  370. package/references/skill-tree/docs/scraper/README.md +0 -170
  371. package/references/skill-tree/examples/basic-usage.ts +0 -164
  372. package/references/skill-tree/package-lock.json +0 -1852
  373. package/references/skill-tree/package.json +0 -66
  374. package/references/skill-tree/scraper/README.md +0 -123
  375. package/references/skill-tree/scraper/docs/DESIGN.md +0 -683
  376. package/references/skill-tree/scraper/docs/PLAN.md +0 -336
  377. package/references/skill-tree/scraper/drizzle.config.ts +0 -10
  378. package/references/skill-tree/scraper/package-lock.json +0 -6329
  379. package/references/skill-tree/scraper/package.json +0 -68
  380. package/references/skill-tree/scraper/test/fixtures/invalid-skill/missing-description.md +0 -7
  381. package/references/skill-tree/scraper/test/fixtures/invalid-skill/missing-name.md +0 -7
  382. package/references/skill-tree/scraper/test/fixtures/minimal-skill/SKILL.md +0 -27
  383. package/references/skill-tree/scraper/test/fixtures/skill-json/SKILL.json +0 -21
  384. package/references/skill-tree/scraper/test/fixtures/skill-with-meta/SKILL.md +0 -54
  385. package/references/skill-tree/scraper/test/fixtures/skill-with-meta/_meta.json +0 -24
  386. package/references/skill-tree/scraper/test/fixtures/valid-skill/SKILL.md +0 -93
  387. package/references/skill-tree/scraper/test/fixtures/valid-skill/_meta.json +0 -22
  388. package/references/skill-tree/scraper/tsup.config.ts +0 -14
  389. package/references/skill-tree/scraper/vitest.config.ts +0 -17
  390. package/references/skill-tree/scripts/convert-to-vitest.ts +0 -166
  391. package/references/skill-tree/skills/skill-writer/SKILL.md +0 -339
  392. package/references/skill-tree/skills/skill-writer/references/examples.md +0 -326
  393. package/references/skill-tree/skills/skill-writer/references/patterns.md +0 -210
  394. package/references/skill-tree/skills/skill-writer/references/quality-checklist.md +0 -123
  395. package/references/skill-tree/test/run-all.ts +0 -106
  396. package/references/skill-tree/test/utils.ts +0 -128
  397. package/references/skill-tree/vitest.config.ts +0 -16
@@ -1,204 +0,0 @@
1
- /**
2
- * Sync change detection
3
- *
4
- * Detects differences between local and remote files.
5
- * With last-write-wins, there are no conflicts - just differences.
6
- */
7
-
8
- import fs from "node:fs/promises";
9
- import path from "node:path";
10
-
11
- import { getSyncConfig } from "../config.js";
12
- import {
13
- listSyncableFiles,
14
- getFileHashInfo,
15
- getFileSyncStatus,
16
- type FileSyncStatus,
17
- } from "./state.js";
18
- import { getCentralRepoPath } from "./central.js";
19
-
20
- const CONFLICTS_DIR = "conflicts";
21
-
22
- export type FileChange = {
23
- /** Relative file path */
24
- file: string;
25
- /** Sync status */
26
- status: FileSyncStatus;
27
- /** Local file hash (null if missing) */
28
- localHash: string | null;
29
- /** Remote file hash (null if missing) */
30
- remoteHash: string | null;
31
- };
32
-
33
- // Keep FileConflict as an alias for backwards compatibility
34
- export type FileConflict = FileChange;
35
-
36
- export type ChangeDetectionResult = {
37
- /** Files that need action */
38
- changes: FileChange[];
39
- /** Files with no changes */
40
- unchanged: string[];
41
- /** Summary counts */
42
- summary: {
43
- unchanged: number;
44
- localOnly: number;
45
- remoteOnly: number;
46
- localModified: number;
47
- };
48
- };
49
-
50
- // Keep ConflictDetectionResult as an alias for backwards compatibility
51
- export type ConflictDetectionResult = ChangeDetectionResult;
52
-
53
- /**
54
- * Get the conflicts directory path (for quarantined files)
55
- */
56
- export function getConflictsDir(memoryDir: string): string {
57
- return path.join(memoryDir, ".minimem", CONFLICTS_DIR);
58
- }
59
-
60
- /**
61
- * Quarantine file versions for manual review
62
- * Saves local and remote versions to conflicts directory
63
- */
64
- export async function quarantineConflict(
65
- memoryDir: string,
66
- filePath: string,
67
- localContent: string | Buffer | null,
68
- remoteContent: string | Buffer | null
69
- ): Promise<string> {
70
- const timestamp = new Date().toISOString().replace(/[:.]/g, "-");
71
- const conflictDir = path.join(getConflictsDir(memoryDir), timestamp);
72
- const flatName = filePath.replace(/\//g, "_");
73
-
74
- await fs.mkdir(conflictDir, { recursive: true });
75
-
76
- if (localContent !== null) {
77
- await fs.writeFile(path.join(conflictDir, `${flatName}.local`), localContent);
78
- }
79
- if (remoteContent !== null) {
80
- await fs.writeFile(path.join(conflictDir, `${flatName}.remote`), remoteContent);
81
- }
82
-
83
- return conflictDir;
84
- }
85
-
86
- /**
87
- * List all quarantined file versions
88
- */
89
- export async function listQuarantinedConflicts(
90
- memoryDir: string
91
- ): Promise<Array<{ timestamp: string; files: string[] }>> {
92
- const conflictsDir = getConflictsDir(memoryDir);
93
- const conflicts: Array<{ timestamp: string; files: string[] }> = [];
94
-
95
- try {
96
- const entries = await fs.readdir(conflictsDir, { withFileTypes: true });
97
-
98
- for (const entry of entries) {
99
- if (entry.isDirectory()) {
100
- const dirPath = path.join(conflictsDir, entry.name);
101
- const files = await fs.readdir(dirPath);
102
-
103
- // Extract unique file names (remove .local, .remote suffixes)
104
- const uniqueFiles = new Set<string>();
105
- for (const file of files) {
106
- const baseName = file.replace(/\.(local|remote|base)$/, "");
107
- uniqueFiles.add(baseName.replace(/_/g, "/"));
108
- }
109
-
110
- conflicts.push({
111
- timestamp: entry.name,
112
- files: Array.from(uniqueFiles),
113
- });
114
- }
115
- }
116
- } catch {
117
- // Directory might not exist
118
- }
119
-
120
- return conflicts.sort((a, b) => b.timestamp.localeCompare(a.timestamp));
121
- }
122
-
123
- /**
124
- * Detect changes between local and remote
125
- */
126
- export async function detectChanges(
127
- memoryDir: string
128
- ): Promise<ChangeDetectionResult> {
129
- // Get central repo path
130
- const centralRepo = await getCentralRepoPath();
131
- if (!centralRepo) {
132
- throw new Error("No central repository configured");
133
- }
134
-
135
- // Get sync config
136
- const syncConfig = await getSyncConfig(memoryDir);
137
- if (!syncConfig.path) {
138
- throw new Error("Directory is not configured for sync");
139
- }
140
-
141
- const remotePath = path.join(centralRepo, syncConfig.path);
142
-
143
- // Get file lists
144
- const [localFiles, remoteFiles] = await Promise.all([
145
- listSyncableFiles(memoryDir, syncConfig.include, syncConfig.exclude),
146
- listSyncableFiles(remotePath, syncConfig.include, syncConfig.exclude),
147
- ]);
148
-
149
- const allFiles = new Set([...localFiles, ...remoteFiles]);
150
-
151
- const changes: FileChange[] = [];
152
- const unchanged: string[] = [];
153
- const summary = {
154
- unchanged: 0,
155
- localOnly: 0,
156
- remoteOnly: 0,
157
- localModified: 0,
158
- };
159
-
160
- for (const file of allFiles) {
161
- const localPath = path.join(memoryDir, file);
162
- const remoteFilePath = path.join(remotePath, file);
163
-
164
- const [localInfo, remoteInfo] = await Promise.all([
165
- getFileHashInfo(localPath),
166
- getFileHashInfo(remoteFilePath),
167
- ]);
168
-
169
- const status = getFileSyncStatus(
170
- localInfo.hash ?? null,
171
- remoteInfo.hash ?? null
172
- );
173
-
174
- if (status === "unchanged") {
175
- unchanged.push(file);
176
- summary.unchanged++;
177
- } else {
178
- changes.push({
179
- file,
180
- status,
181
- localHash: localInfo.hash ?? null,
182
- remoteHash: remoteInfo.hash ?? null,
183
- });
184
-
185
- // Update summary
186
- switch (status) {
187
- case "local-only":
188
- summary.localOnly++;
189
- break;
190
- case "remote-only":
191
- summary.remoteOnly++;
192
- break;
193
- case "local-modified":
194
- summary.localModified++;
195
- break;
196
- }
197
- }
198
- }
199
-
200
- return { changes, unchanged, summary };
201
- }
202
-
203
- // Keep detectConflicts as an alias for backwards compatibility
204
- export const detectConflicts = detectChanges;
@@ -1,407 +0,0 @@
1
- /**
2
- * Sync daemon - watches directories and syncs automatically
3
- */
4
-
5
- import fs from "node:fs/promises";
6
- import path from "node:path";
7
- import os from "node:os";
8
-
9
- import { createFileWatcher, type WatcherInstance, type FileChange } from "./watcher.js";
10
- import { push, pull } from "./operations.js";
11
- import { readRegistry, type Registry } from "./registry.js";
12
- import { getCentralRepoPath } from "./central.js";
13
- import { loadXdgConfig, getSyncConfig } from "../config.js";
14
- import { validateRegistry, type ValidationResult } from "./validation.js";
15
-
16
- const DAEMON_LOG_FILE = "daemon.log";
17
- const PID_FILE = "daemon.pid";
18
- const MAX_LOG_SIZE = 1024 * 1024; // 1MB
19
-
20
- export type DaemonOptions = {
21
- /** Run in background (detach from terminal) */
22
- background?: boolean;
23
- /** Sync interval in milliseconds (for central repo polling) */
24
- pollInterval?: number;
25
- /** Validation interval in milliseconds (default: 5 minutes) */
26
- validationInterval?: number;
27
- /** Log level */
28
- logLevel?: "debug" | "info" | "warn" | "error";
29
- };
30
-
31
- export type DaemonStatus = {
32
- running: boolean;
33
- pid?: number;
34
- startTime?: string;
35
- watchedDirs?: string[];
36
- };
37
-
38
- /**
39
- * Get the daemon directory path
40
- */
41
- export function getDaemonDir(): string {
42
- return path.join(os.homedir(), ".minimem");
43
- }
44
-
45
- /**
46
- * Get PID file path
47
- */
48
- export function getPidFilePath(): string {
49
- return path.join(getDaemonDir(), PID_FILE);
50
- }
51
-
52
- /**
53
- * Get daemon log path
54
- */
55
- export function getDaemonLogPath(): string {
56
- return path.join(getDaemonDir(), DAEMON_LOG_FILE);
57
- }
58
-
59
- /**
60
- * Check if daemon is running
61
- */
62
- export async function isDaemonRunning(): Promise<boolean> {
63
- const pidFile = getPidFilePath();
64
-
65
- try {
66
- const content = await fs.readFile(pidFile, "utf-8");
67
- const pid = parseInt(content.trim(), 10);
68
-
69
- if (isNaN(pid)) {
70
- return false;
71
- }
72
-
73
- // Check if process is running
74
- try {
75
- process.kill(pid, 0);
76
- return true;
77
- } catch {
78
- // Process not running, clean up stale PID file
79
- await fs.unlink(pidFile).catch(() => {});
80
- return false;
81
- }
82
- } catch {
83
- return false;
84
- }
85
- }
86
-
87
- /**
88
- * Get daemon status
89
- */
90
- export async function getDaemonStatus(): Promise<DaemonStatus> {
91
- const running = await isDaemonRunning();
92
-
93
- if (!running) {
94
- return { running: false };
95
- }
96
-
97
- const pidFile = getPidFilePath();
98
- const content = await fs.readFile(pidFile, "utf-8");
99
- const pid = parseInt(content.trim(), 10);
100
-
101
- return {
102
- running: true,
103
- pid,
104
- };
105
- }
106
-
107
- /**
108
- * Write to daemon log
109
- */
110
- async function writeLog(
111
- message: string,
112
- level: "debug" | "info" | "warn" | "error" = "info"
113
- ): Promise<void> {
114
- const logPath = getDaemonLogPath();
115
- const timestamp = new Date().toISOString();
116
- const line = `[${timestamp}] [${level.toUpperCase()}] ${message}\n`;
117
-
118
- try {
119
- await fs.mkdir(path.dirname(logPath), { recursive: true });
120
-
121
- // Rotate log if too large
122
- try {
123
- const stats = await fs.stat(logPath);
124
- if (stats.size > MAX_LOG_SIZE) {
125
- await fs.rename(logPath, `${logPath}.old`);
126
- }
127
- } catch {
128
- // File doesn't exist
129
- }
130
-
131
- await fs.appendFile(logPath, line);
132
- } catch (error) {
133
- console.error(`Failed to write log: ${error}`);
134
- }
135
- }
136
-
137
- /**
138
- * Stop the daemon
139
- */
140
- export async function stopDaemon(): Promise<boolean> {
141
- const status = await getDaemonStatus();
142
-
143
- if (!status.running || !status.pid) {
144
- return false;
145
- }
146
-
147
- try {
148
- process.kill(status.pid, "SIGTERM");
149
-
150
- // Wait for process to exit
151
- let attempts = 0;
152
- while (attempts < 10) {
153
- await new Promise((r) => setTimeout(r, 500));
154
- if (!(await isDaemonRunning())) {
155
- return true;
156
- }
157
- attempts++;
158
- }
159
-
160
- // Force kill if still running
161
- try {
162
- process.kill(status.pid, "SIGKILL");
163
- } catch {
164
- // Process may have already exited
165
- }
166
-
167
- return true;
168
- } catch {
169
- return false;
170
- }
171
- }
172
-
173
- /**
174
- * Start the daemon
175
- */
176
- export async function startDaemon(options: DaemonOptions = {}): Promise<void> {
177
- const pollInterval = options.pollInterval ?? 30000; // 30 seconds
178
-
179
- // Check if already running
180
- if (await isDaemonRunning()) {
181
- throw new Error("Daemon is already running");
182
- }
183
-
184
- // Write PID file
185
- const daemonDir = getDaemonDir();
186
- await fs.mkdir(daemonDir, { recursive: true });
187
- await fs.writeFile(getPidFilePath(), String(process.pid));
188
-
189
- await writeLog("Daemon starting");
190
-
191
- // Get central repo path
192
- const centralRepo = await getCentralRepoPath();
193
- if (!centralRepo) {
194
- await writeLog("No central repository configured", "warn");
195
- }
196
-
197
- // Get all directories with sync enabled from registry
198
- const watchedDirs: Map<string, WatcherInstance> = new Map();
199
- let running = true;
200
-
201
- // Load directories from registry
202
- async function loadWatchedDirs(): Promise<void> {
203
- if (!centralRepo) return;
204
-
205
- try {
206
- const registry = await readRegistry(centralRepo);
207
-
208
- // Get local directories that should be watched
209
- const xdgConfig = await loadXdgConfig();
210
- const machineId = xdgConfig.machineId;
211
-
212
- for (const mapping of registry.mappings) {
213
- if (mapping.machineId !== machineId) continue;
214
-
215
- const localPath = mapping.localPath;
216
-
217
- // Skip if already watching
218
- if (watchedDirs.has(localPath)) continue;
219
-
220
- // Check if sync is enabled for this directory
221
- try {
222
- const syncConfig = await getSyncConfig(localPath);
223
- if (!syncConfig.enabled) continue;
224
-
225
- // Start watcher
226
- const watcher = createFileWatcher(localPath, {
227
- debounceMs: 2000,
228
- });
229
-
230
- watcher.on("changes", async (changes: FileChange[]) => {
231
- await handleLocalChanges(localPath, changes);
232
- });
233
-
234
- watchedDirs.set(localPath, watcher);
235
- await writeLog(`Watching directory: ${localPath}`);
236
- } catch (error) {
237
- await writeLog(`Failed to watch ${localPath}: ${error}`, "error");
238
- }
239
- }
240
- } catch (error) {
241
- await writeLog(`Failed to load registry: ${error}`, "error");
242
- }
243
- }
244
-
245
- // Handle local file changes
246
- async function handleLocalChanges(
247
- memoryDir: string,
248
- changes: FileChange[]
249
- ): Promise<void> {
250
- await writeLog(`Local changes in ${memoryDir}: ${changes.map((c) => c.file).join(", ")}`);
251
-
252
- try {
253
- const syncConfig = await getSyncConfig(memoryDir);
254
-
255
- if (syncConfig.autoSync) {
256
- await writeLog(`Auto-pushing changes from ${memoryDir}`);
257
- const result = await push(memoryDir, { dryRun: false });
258
-
259
- if (result.success) {
260
- await writeLog(`Pushed ${result.pushed.length} files from ${memoryDir}`);
261
- } else {
262
- await writeLog(
263
- `Push failed for ${memoryDir}: ${result.errors.join(", ")}`,
264
- "error"
265
- );
266
- }
267
- }
268
- } catch (error) {
269
- await writeLog(`Failed to handle changes in ${memoryDir}: ${error}`, "error");
270
- }
271
- }
272
-
273
- // Poll central repo for changes
274
- async function pollCentralRepo(): Promise<void> {
275
- if (!centralRepo) return;
276
-
277
- try {
278
- // Check for changes in central repo that need to be pulled
279
- for (const [localPath] of watchedDirs) {
280
- try {
281
- const syncConfig = await getSyncConfig(localPath);
282
-
283
- if (syncConfig.autoSync) {
284
- const result = await pull(localPath, { dryRun: true });
285
-
286
- if (result.pulled.length > 0) {
287
- await writeLog(`Remote changes detected for ${localPath}, pulling...`);
288
- await pull(localPath, { dryRun: false });
289
- }
290
- }
291
- } catch (error) {
292
- await writeLog(`Failed to check/pull for ${localPath}: ${error}`, "error");
293
- }
294
- }
295
- } catch (error) {
296
- await writeLog(`Failed to poll central repo: ${error}`, "error");
297
- }
298
- }
299
-
300
- // Cleanup function
301
- async function cleanup(): Promise<void> {
302
- running = false;
303
- await writeLog("Daemon stopping");
304
-
305
- // Close all watchers
306
- for (const [dir, watcher] of watchedDirs) {
307
- try {
308
- await watcher.close();
309
- await writeLog(`Stopped watching: ${dir}`);
310
- } catch (error) {
311
- await writeLog(`Error closing watcher for ${dir}: ${error}`, "error");
312
- }
313
- }
314
- watchedDirs.clear();
315
-
316
- // Remove PID file
317
- try {
318
- await fs.unlink(getPidFilePath());
319
- } catch {
320
- // Ignore
321
- }
322
-
323
- await writeLog("Daemon stopped");
324
- }
325
-
326
- // Handle signals
327
- process.on("SIGTERM", async () => {
328
- await cleanup();
329
- process.exit(0);
330
- });
331
-
332
- process.on("SIGINT", async () => {
333
- await cleanup();
334
- process.exit(0);
335
- });
336
-
337
- // Validate registry on startup
338
- async function runValidation(): Promise<void> {
339
- try {
340
- const result = await validateRegistry();
341
-
342
- if (result.issues.length > 0) {
343
- for (const issue of result.issues) {
344
- const level = issue.severity === "error" ? "error" : "warn";
345
- await writeLog(`Validation: ${issue.message}`, level);
346
- }
347
- }
348
- } catch (error) {
349
- await writeLog(`Validation failed: ${error}`, "error");
350
- }
351
- }
352
-
353
- // Initial load and validation
354
- await runValidation();
355
- await loadWatchedDirs();
356
-
357
- // Validation interval tracking
358
- const validationInterval = options.validationInterval ?? 5 * 60 * 1000; // 5 minutes
359
- let lastValidation = Date.now();
360
-
361
- // Main loop
362
- while (running) {
363
- await new Promise((r) => setTimeout(r, pollInterval));
364
-
365
- if (!running) break;
366
-
367
- // Reload directories in case new ones were added
368
- await loadWatchedDirs();
369
-
370
- // Poll central repo for changes
371
- await pollCentralRepo();
372
-
373
- // Periodic validation
374
- if (Date.now() - lastValidation > validationInterval) {
375
- await runValidation();
376
- lastValidation = Date.now();
377
- }
378
- }
379
- }
380
-
381
- /**
382
- * Run daemon in background (fork process)
383
- */
384
- export async function startDaemonBackground(): Promise<number> {
385
- const { spawn } = await import("node:child_process");
386
-
387
- // Get the path to the CLI
388
- const cliPath = process.argv[1];
389
-
390
- const child = spawn(process.execPath, [cliPath, "daemon", "--foreground"], {
391
- detached: true,
392
- stdio: "ignore",
393
- });
394
-
395
- child.unref();
396
-
397
- if (child.pid) {
398
- // Wait a moment and verify it started
399
- await new Promise((r) => setTimeout(r, 1000));
400
-
401
- if (await isDaemonRunning()) {
402
- return child.pid;
403
- }
404
- }
405
-
406
- throw new Error("Failed to start daemon in background");
407
- }