cognitive-core 0.2.0 → 0.2.2

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Files changed (397) hide show
  1. package/.claude/settings.json +111 -2
  2. package/.sessionlog/settings.json +4 -0
  3. package/dist/atlas.d.ts +10 -0
  4. package/dist/atlas.d.ts.map +1 -1
  5. package/dist/atlas.js +65 -0
  6. package/dist/atlas.js.map +1 -1
  7. package/dist/index.d.ts +1 -1
  8. package/dist/index.d.ts.map +1 -1
  9. package/dist/index.js +5 -1
  10. package/dist/index.js.map +1 -1
  11. package/dist/learning/index.d.ts +1 -1
  12. package/dist/learning/index.d.ts.map +1 -1
  13. package/dist/learning/index.js.map +1 -1
  14. package/dist/learning/pipeline.d.ts +4 -31
  15. package/dist/learning/pipeline.d.ts.map +1 -1
  16. package/dist/learning/pipeline.js +12 -64
  17. package/dist/learning/pipeline.js.map +1 -1
  18. package/dist/learning/unified-pipeline.d.ts +30 -0
  19. package/dist/learning/unified-pipeline.d.ts.map +1 -1
  20. package/dist/learning/unified-pipeline.js +207 -0
  21. package/dist/learning/unified-pipeline.js.map +1 -1
  22. package/dist/memory/candidate-retrieval.d.ts.map +1 -1
  23. package/dist/memory/candidate-retrieval.js +3 -1
  24. package/dist/memory/candidate-retrieval.js.map +1 -1
  25. package/dist/memory/curated-loader.d.ts +21 -4
  26. package/dist/memory/curated-loader.d.ts.map +1 -1
  27. package/dist/memory/curated-loader.js +53 -16
  28. package/dist/memory/curated-loader.js.map +1 -1
  29. package/dist/memory/index.d.ts +2 -1
  30. package/dist/memory/index.d.ts.map +1 -1
  31. package/dist/memory/index.js +3 -1
  32. package/dist/memory/index.js.map +1 -1
  33. package/dist/memory/playbook.d.ts +6 -0
  34. package/dist/memory/playbook.d.ts.map +1 -1
  35. package/dist/memory/playbook.js +15 -0
  36. package/dist/memory/playbook.js.map +1 -1
  37. package/dist/memory/source-resolver.d.ts +120 -0
  38. package/dist/memory/source-resolver.d.ts.map +1 -0
  39. package/dist/memory/source-resolver.js +300 -0
  40. package/dist/memory/source-resolver.js.map +1 -0
  41. package/dist/types/config.d.ts +141 -0
  42. package/dist/types/config.d.ts.map +1 -1
  43. package/dist/types/config.js +40 -0
  44. package/dist/types/config.js.map +1 -1
  45. package/dist/types/index.d.ts +1 -1
  46. package/dist/types/index.d.ts.map +1 -1
  47. package/dist/types/index.js +1 -1
  48. package/dist/types/index.js.map +1 -1
  49. package/dist/utils/error-classifier.js +8 -8
  50. package/dist/utils/error-classifier.js.map +1 -1
  51. package/dist/workspace/efficacy-toolkit.d.ts +164 -0
  52. package/dist/workspace/efficacy-toolkit.d.ts.map +1 -0
  53. package/dist/workspace/efficacy-toolkit.js +281 -0
  54. package/dist/workspace/efficacy-toolkit.js.map +1 -0
  55. package/dist/workspace/index.d.ts +2 -1
  56. package/dist/workspace/index.d.ts.map +1 -1
  57. package/dist/workspace/index.js +3 -1
  58. package/dist/workspace/index.js.map +1 -1
  59. package/dist/workspace/templates/index.d.ts +3 -0
  60. package/dist/workspace/templates/index.d.ts.map +1 -1
  61. package/dist/workspace/templates/index.js +6 -0
  62. package/dist/workspace/templates/index.js.map +1 -1
  63. package/dist/workspace/templates/playbook-decay-detection.d.ts +46 -0
  64. package/dist/workspace/templates/playbook-decay-detection.d.ts.map +1 -0
  65. package/dist/workspace/templates/playbook-decay-detection.js +197 -0
  66. package/dist/workspace/templates/playbook-decay-detection.js.map +1 -0
  67. package/dist/workspace/templates/playbook-efficacy-audit.d.ts +46 -0
  68. package/dist/workspace/templates/playbook-efficacy-audit.d.ts.map +1 -0
  69. package/dist/workspace/templates/playbook-efficacy-audit.js +160 -0
  70. package/dist/workspace/templates/playbook-efficacy-audit.js.map +1 -0
  71. package/dist/workspace/templates/playbook-lifecycle-review.d.ts +51 -0
  72. package/dist/workspace/templates/playbook-lifecycle-review.d.ts.map +1 -0
  73. package/dist/workspace/templates/playbook-lifecycle-review.js +187 -0
  74. package/dist/workspace/templates/playbook-lifecycle-review.js.map +1 -0
  75. package/dist/workspace/types.d.ts +12 -54
  76. package/dist/workspace/types.d.ts.map +1 -1
  77. package/dist/workspace/types.js.map +1 -1
  78. package/package.json +8 -2
  79. package/playbooks/compound-engineering/adversarial-review.json +51 -0
  80. package/playbooks/compound-engineering/agent-native-architecture.json +59 -0
  81. package/playbooks/compound-engineering/agent-native-review.json +54 -0
  82. package/playbooks/compound-engineering/api-contract-review.json +52 -0
  83. package/playbooks/compound-engineering/brainstorm-requirements.json +55 -0
  84. package/playbooks/compound-engineering/bug-reproduction.json +62 -0
  85. package/playbooks/compound-engineering/confidence-calibration.json +49 -0
  86. package/playbooks/compound-engineering/correctness-review.json +49 -0
  87. package/playbooks/compound-engineering/data-migration-safety.json +59 -0
  88. package/playbooks/compound-engineering/deployment-verification.json +63 -0
  89. package/playbooks/compound-engineering/error-recovery-patterns.json +53 -0
  90. package/playbooks/compound-engineering/implementation-planning.json +64 -0
  91. package/playbooks/compound-engineering/issue-pattern-analysis.json +53 -0
  92. package/playbooks/compound-engineering/knowledge-compounding.json +63 -0
  93. package/playbooks/compound-engineering/learnings-research.json +54 -0
  94. package/playbooks/compound-engineering/maintainability-review.json +49 -0
  95. package/playbooks/compound-engineering/performance-review.json +54 -0
  96. package/playbooks/compound-engineering/plan-adversarial-review.json +56 -0
  97. package/playbooks/compound-engineering/plan-feasibility-review.json +56 -0
  98. package/playbooks/compound-engineering/project-standards-review.json +52 -0
  99. package/playbooks/compound-engineering/reliability-review.json +53 -0
  100. package/playbooks/compound-engineering/review-orchestration.json +64 -0
  101. package/playbooks/compound-engineering/security-review.json +54 -0
  102. package/playbooks/compound-engineering/systematic-execution.json +64 -0
  103. package/playbooks/compound-engineering/testing-review.json +50 -0
  104. package/src/atlas.ts +96 -0
  105. package/src/index.ts +27 -0
  106. package/src/learning/index.ts +1 -0
  107. package/src/learning/unified-pipeline.ts +271 -1
  108. package/src/memory/candidate-retrieval.ts +2 -1
  109. package/src/memory/curated-loader.ts +69 -16
  110. package/src/memory/index.ts +16 -0
  111. package/src/memory/playbook.ts +19 -0
  112. package/src/memory/source-resolver.ts +422 -0
  113. package/src/types/config.ts +46 -0
  114. package/src/types/index.ts +4 -0
  115. package/src/utils/error-classifier.ts +8 -8
  116. package/src/workspace/efficacy-toolkit.ts +496 -0
  117. package/src/workspace/index.ts +29 -0
  118. package/src/workspace/templates/index.ts +24 -0
  119. package/src/workspace/templates/playbook-decay-detection.ts +272 -0
  120. package/src/workspace/templates/playbook-efficacy-audit.ts +246 -0
  121. package/src/workspace/templates/playbook-lifecycle-review.ts +274 -0
  122. package/src/workspace/types.ts +22 -78
  123. package/tests/fixtures/behavioral-trajectories.ts +210 -0
  124. package/tests/integration/curated-sources-e2e.test.ts +502 -0
  125. package/tests/integration/pipeline-data-correctness.test.ts +794 -0
  126. package/tests/learning/meta-learner.test.ts +418 -0
  127. package/tests/learning/pipeline-memory-updates.test.ts +721 -0
  128. package/tests/learning/unified-pipeline-efficacy.test.ts +232 -0
  129. package/tests/memory/candidate-retrieval.test.ts +167 -0
  130. package/tests/memory/compound-engineering-seed.test.ts +338 -0
  131. package/tests/memory/curated-loader-extended.test.ts +225 -0
  132. package/tests/memory/meta.test.ts +399 -0
  133. package/tests/memory/playbook-quality-validation.test.ts +430 -0
  134. package/tests/memory/source-resolver.test.ts +700 -0
  135. package/tests/search/evaluator.test.ts +257 -0
  136. package/tests/search/verification-runner.test.ts +357 -0
  137. package/tests/utils/error-classifier.test.ts +149 -0
  138. package/tests/utils/trajectory-helpers.test.ts +163 -0
  139. package/tests/workspace/efficacy-toolkit.test.ts +404 -0
  140. package/tests/workspace/templates/playbook-efficacy.test.ts +377 -0
  141. package/.claude/settings.local.json +0 -11
  142. package/dist/learning/llm-extractor.d.ts +0 -88
  143. package/dist/learning/llm-extractor.d.ts.map +0 -1
  144. package/dist/learning/llm-extractor.js +0 -372
  145. package/dist/learning/llm-extractor.js.map +0 -1
  146. package/dist/learning/loop-coordinator.d.ts +0 -61
  147. package/dist/learning/loop-coordinator.d.ts.map +0 -1
  148. package/dist/learning/loop-coordinator.js +0 -96
  149. package/dist/learning/loop-coordinator.js.map +0 -1
  150. package/references/agent-workspace/CLAUDE.md +0 -74
  151. package/references/agent-workspace/README.md +0 -587
  152. package/references/agent-workspace/media/banner.png +0 -0
  153. package/references/agent-workspace/package-lock.json +0 -2061
  154. package/references/agent-workspace/package.json +0 -54
  155. package/references/agent-workspace/src/handle.ts +0 -122
  156. package/references/agent-workspace/src/index.ts +0 -32
  157. package/references/agent-workspace/src/manager.ts +0 -102
  158. package/references/agent-workspace/src/readers/json.ts +0 -71
  159. package/references/agent-workspace/src/readers/markdown.ts +0 -37
  160. package/references/agent-workspace/src/readers/raw.ts +0 -27
  161. package/references/agent-workspace/src/types.ts +0 -68
  162. package/references/agent-workspace/src/validation.ts +0 -93
  163. package/references/agent-workspace/src/writers/json.ts +0 -17
  164. package/references/agent-workspace/src/writers/markdown.ts +0 -27
  165. package/references/agent-workspace/src/writers/raw.ts +0 -22
  166. package/references/agent-workspace/tests/errors.test.ts +0 -652
  167. package/references/agent-workspace/tests/handle.test.ts +0 -144
  168. package/references/agent-workspace/tests/manager.test.ts +0 -124
  169. package/references/agent-workspace/tests/readers.test.ts +0 -205
  170. package/references/agent-workspace/tests/validation.test.ts +0 -196
  171. package/references/agent-workspace/tests/writers.test.ts +0 -108
  172. package/references/agent-workspace/tsconfig.json +0 -20
  173. package/references/agent-workspace/tsup.config.ts +0 -9
  174. package/references/minimem/.claude/settings.json +0 -7
  175. package/references/minimem/.sudocode/issues.jsonl +0 -18
  176. package/references/minimem/.sudocode/specs.jsonl +0 -1
  177. package/references/minimem/CLAUDE.md +0 -310
  178. package/references/minimem/README.md +0 -556
  179. package/references/minimem/claude-plugin/.claude-plugin/plugin.json +0 -10
  180. package/references/minimem/claude-plugin/.mcp.json +0 -7
  181. package/references/minimem/claude-plugin/README.md +0 -158
  182. package/references/minimem/claude-plugin/commands/recall.md +0 -47
  183. package/references/minimem/claude-plugin/commands/remember.md +0 -41
  184. package/references/minimem/claude-plugin/hooks/__tests__/hooks.test.ts +0 -272
  185. package/references/minimem/claude-plugin/hooks/hooks.json +0 -27
  186. package/references/minimem/claude-plugin/hooks/session-end.sh +0 -86
  187. package/references/minimem/claude-plugin/hooks/session-start.sh +0 -85
  188. package/references/minimem/claude-plugin/skills/memory/SKILL.md +0 -108
  189. package/references/minimem/package-lock.json +0 -5373
  190. package/references/minimem/package.json +0 -60
  191. package/references/minimem/scripts/postbuild.js +0 -35
  192. package/references/minimem/src/__tests__/edge-cases.test.ts +0 -371
  193. package/references/minimem/src/__tests__/errors.test.ts +0 -265
  194. package/references/minimem/src/__tests__/helpers.ts +0 -199
  195. package/references/minimem/src/__tests__/internal.test.ts +0 -407
  196. package/references/minimem/src/__tests__/knowledge.test.ts +0 -287
  197. package/references/minimem/src/__tests__/minimem.integration.test.ts +0 -1127
  198. package/references/minimem/src/__tests__/session.test.ts +0 -190
  199. package/references/minimem/src/cli/__tests__/commands.test.ts +0 -759
  200. package/references/minimem/src/cli/commands/__tests__/conflicts.test.ts +0 -141
  201. package/references/minimem/src/cli/commands/append.ts +0 -76
  202. package/references/minimem/src/cli/commands/config.ts +0 -262
  203. package/references/minimem/src/cli/commands/conflicts.ts +0 -413
  204. package/references/minimem/src/cli/commands/daemon.ts +0 -169
  205. package/references/minimem/src/cli/commands/index.ts +0 -12
  206. package/references/minimem/src/cli/commands/init.ts +0 -88
  207. package/references/minimem/src/cli/commands/mcp.ts +0 -177
  208. package/references/minimem/src/cli/commands/push-pull.ts +0 -213
  209. package/references/minimem/src/cli/commands/search.ts +0 -158
  210. package/references/minimem/src/cli/commands/status.ts +0 -84
  211. package/references/minimem/src/cli/commands/sync-init.ts +0 -290
  212. package/references/minimem/src/cli/commands/sync.ts +0 -70
  213. package/references/minimem/src/cli/commands/upsert.ts +0 -197
  214. package/references/minimem/src/cli/config.ts +0 -584
  215. package/references/minimem/src/cli/index.ts +0 -264
  216. package/references/minimem/src/cli/shared.ts +0 -161
  217. package/references/minimem/src/cli/sync/__tests__/central.test.ts +0 -152
  218. package/references/minimem/src/cli/sync/__tests__/conflicts.test.ts +0 -209
  219. package/references/minimem/src/cli/sync/__tests__/daemon.test.ts +0 -118
  220. package/references/minimem/src/cli/sync/__tests__/detection.test.ts +0 -207
  221. package/references/minimem/src/cli/sync/__tests__/integration.test.ts +0 -476
  222. package/references/minimem/src/cli/sync/__tests__/registry.test.ts +0 -363
  223. package/references/minimem/src/cli/sync/__tests__/state.test.ts +0 -255
  224. package/references/minimem/src/cli/sync/__tests__/validation.test.ts +0 -193
  225. package/references/minimem/src/cli/sync/__tests__/watcher.test.ts +0 -178
  226. package/references/minimem/src/cli/sync/central.ts +0 -292
  227. package/references/minimem/src/cli/sync/conflicts.ts +0 -204
  228. package/references/minimem/src/cli/sync/daemon.ts +0 -407
  229. package/references/minimem/src/cli/sync/detection.ts +0 -138
  230. package/references/minimem/src/cli/sync/index.ts +0 -107
  231. package/references/minimem/src/cli/sync/operations.ts +0 -373
  232. package/references/minimem/src/cli/sync/registry.ts +0 -279
  233. package/references/minimem/src/cli/sync/state.ts +0 -355
  234. package/references/minimem/src/cli/sync/validation.ts +0 -206
  235. package/references/minimem/src/cli/sync/watcher.ts +0 -234
  236. package/references/minimem/src/cli/version.ts +0 -34
  237. package/references/minimem/src/core/index.ts +0 -9
  238. package/references/minimem/src/core/indexer.ts +0 -628
  239. package/references/minimem/src/core/searcher.ts +0 -221
  240. package/references/minimem/src/db/schema.ts +0 -183
  241. package/references/minimem/src/db/sqlite-vec.ts +0 -24
  242. package/references/minimem/src/embeddings/__tests__/embeddings.test.ts +0 -431
  243. package/references/minimem/src/embeddings/batch-gemini.ts +0 -392
  244. package/references/minimem/src/embeddings/batch-openai.ts +0 -409
  245. package/references/minimem/src/embeddings/embeddings.ts +0 -434
  246. package/references/minimem/src/index.ts +0 -109
  247. package/references/minimem/src/internal.ts +0 -299
  248. package/references/minimem/src/minimem.ts +0 -1276
  249. package/references/minimem/src/search/__tests__/hybrid.test.ts +0 -247
  250. package/references/minimem/src/search/graph.ts +0 -234
  251. package/references/minimem/src/search/hybrid.ts +0 -151
  252. package/references/minimem/src/search/search.ts +0 -256
  253. package/references/minimem/src/server/__tests__/mcp.test.ts +0 -341
  254. package/references/minimem/src/server/__tests__/tools.test.ts +0 -364
  255. package/references/minimem/src/server/mcp.ts +0 -326
  256. package/references/minimem/src/server/tools.ts +0 -720
  257. package/references/minimem/src/session.ts +0 -460
  258. package/references/minimem/tsconfig.json +0 -19
  259. package/references/minimem/tsup.config.ts +0 -26
  260. package/references/minimem/vitest.config.ts +0 -24
  261. package/references/sessionlog/.husky/pre-commit +0 -1
  262. package/references/sessionlog/.lintstagedrc.json +0 -4
  263. package/references/sessionlog/.prettierignore +0 -4
  264. package/references/sessionlog/.prettierrc.json +0 -11
  265. package/references/sessionlog/LICENSE +0 -21
  266. package/references/sessionlog/README.md +0 -453
  267. package/references/sessionlog/eslint.config.js +0 -58
  268. package/references/sessionlog/package-lock.json +0 -3672
  269. package/references/sessionlog/package.json +0 -65
  270. package/references/sessionlog/src/__tests__/agent-hooks.test.ts +0 -570
  271. package/references/sessionlog/src/__tests__/agent-registry.test.ts +0 -127
  272. package/references/sessionlog/src/__tests__/claude-code-hooks.test.ts +0 -225
  273. package/references/sessionlog/src/__tests__/claude-generator.test.ts +0 -46
  274. package/references/sessionlog/src/__tests__/commit-msg.test.ts +0 -86
  275. package/references/sessionlog/src/__tests__/cursor-agent.test.ts +0 -224
  276. package/references/sessionlog/src/__tests__/e2e-live.test.ts +0 -890
  277. package/references/sessionlog/src/__tests__/event-log.test.ts +0 -183
  278. package/references/sessionlog/src/__tests__/flush-sentinel.test.ts +0 -105
  279. package/references/sessionlog/src/__tests__/gemini-agent.test.ts +0 -375
  280. package/references/sessionlog/src/__tests__/git-hooks.test.ts +0 -78
  281. package/references/sessionlog/src/__tests__/hook-managers.test.ts +0 -121
  282. package/references/sessionlog/src/__tests__/lifecycle-tasks.test.ts +0 -759
  283. package/references/sessionlog/src/__tests__/opencode-agent.test.ts +0 -338
  284. package/references/sessionlog/src/__tests__/redaction.test.ts +0 -136
  285. package/references/sessionlog/src/__tests__/session-repo.test.ts +0 -353
  286. package/references/sessionlog/src/__tests__/session-store.test.ts +0 -166
  287. package/references/sessionlog/src/__tests__/setup-ccweb.test.ts +0 -466
  288. package/references/sessionlog/src/__tests__/skill-live.test.ts +0 -461
  289. package/references/sessionlog/src/__tests__/summarize.test.ts +0 -348
  290. package/references/sessionlog/src/__tests__/task-plan-e2e.test.ts +0 -610
  291. package/references/sessionlog/src/__tests__/task-plan-live.test.ts +0 -632
  292. package/references/sessionlog/src/__tests__/transcript-timestamp.test.ts +0 -121
  293. package/references/sessionlog/src/__tests__/types.test.ts +0 -166
  294. package/references/sessionlog/src/__tests__/utils.test.ts +0 -333
  295. package/references/sessionlog/src/__tests__/validation.test.ts +0 -103
  296. package/references/sessionlog/src/__tests__/worktree.test.ts +0 -57
  297. package/references/sessionlog/src/agent/agents/claude-code.ts +0 -1089
  298. package/references/sessionlog/src/agent/agents/cursor.ts +0 -361
  299. package/references/sessionlog/src/agent/agents/gemini-cli.ts +0 -632
  300. package/references/sessionlog/src/agent/agents/opencode.ts +0 -540
  301. package/references/sessionlog/src/agent/registry.ts +0 -143
  302. package/references/sessionlog/src/agent/session-types.ts +0 -113
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  304. package/references/sessionlog/src/cli.ts +0 -597
  305. package/references/sessionlog/src/commands/clean.ts +0 -133
  306. package/references/sessionlog/src/commands/disable.ts +0 -84
  307. package/references/sessionlog/src/commands/doctor.ts +0 -145
  308. package/references/sessionlog/src/commands/enable.ts +0 -202
  309. package/references/sessionlog/src/commands/explain.ts +0 -261
  310. package/references/sessionlog/src/commands/reset.ts +0 -105
  311. package/references/sessionlog/src/commands/resume.ts +0 -180
  312. package/references/sessionlog/src/commands/rewind.ts +0 -195
  313. package/references/sessionlog/src/commands/setup-ccweb.ts +0 -275
  314. package/references/sessionlog/src/commands/status.ts +0 -172
  315. package/references/sessionlog/src/config.ts +0 -165
  316. package/references/sessionlog/src/events/event-log.ts +0 -126
  317. package/references/sessionlog/src/git-operations.ts +0 -558
  318. package/references/sessionlog/src/hooks/git-hooks.ts +0 -165
  319. package/references/sessionlog/src/hooks/lifecycle.ts +0 -391
  320. package/references/sessionlog/src/index.ts +0 -650
  321. package/references/sessionlog/src/security/redaction.ts +0 -283
  322. package/references/sessionlog/src/session/state-machine.ts +0 -452
  323. package/references/sessionlog/src/store/checkpoint-store.ts +0 -509
  324. package/references/sessionlog/src/store/native-store.ts +0 -173
  325. package/references/sessionlog/src/store/provider-types.ts +0 -99
  326. package/references/sessionlog/src/store/session-store.ts +0 -266
  327. package/references/sessionlog/src/strategy/attribution.ts +0 -296
  328. package/references/sessionlog/src/strategy/common.ts +0 -207
  329. package/references/sessionlog/src/strategy/content-overlap.ts +0 -228
  330. package/references/sessionlog/src/strategy/manual-commit.ts +0 -988
  331. package/references/sessionlog/src/strategy/types.ts +0 -279
  332. package/references/sessionlog/src/summarize/claude-generator.ts +0 -115
  333. package/references/sessionlog/src/summarize/summarize.ts +0 -432
  334. package/references/sessionlog/src/types.ts +0 -508
  335. package/references/sessionlog/src/utils/chunk-files.ts +0 -49
  336. package/references/sessionlog/src/utils/commit-message.ts +0 -65
  337. package/references/sessionlog/src/utils/detect-agent.ts +0 -36
  338. package/references/sessionlog/src/utils/hook-managers.ts +0 -125
  339. package/references/sessionlog/src/utils/ide-tags.ts +0 -32
  340. package/references/sessionlog/src/utils/paths.ts +0 -79
  341. package/references/sessionlog/src/utils/preview-rewind.ts +0 -80
  342. package/references/sessionlog/src/utils/rewind-conflict.ts +0 -121
  343. package/references/sessionlog/src/utils/shadow-branch.ts +0 -109
  344. package/references/sessionlog/src/utils/string-utils.ts +0 -46
  345. package/references/sessionlog/src/utils/todo-extract.ts +0 -188
  346. package/references/sessionlog/src/utils/trailers.ts +0 -187
  347. package/references/sessionlog/src/utils/transcript-parse.ts +0 -177
  348. package/references/sessionlog/src/utils/transcript-timestamp.ts +0 -59
  349. package/references/sessionlog/src/utils/tree-ops.ts +0 -219
  350. package/references/sessionlog/src/utils/tty.ts +0 -72
  351. package/references/sessionlog/src/utils/validation.ts +0 -65
  352. package/references/sessionlog/src/utils/worktree.ts +0 -58
  353. package/references/sessionlog/src/wire-types.ts +0 -59
  354. package/references/sessionlog/templates/setup-env.sh +0 -153
  355. package/references/sessionlog/tsconfig.json +0 -18
  356. package/references/sessionlog/vitest.config.ts +0 -12
  357. package/references/skill-tree/.claude/settings.json +0 -6
  358. package/references/skill-tree/.sudocode/issues.jsonl +0 -19
  359. package/references/skill-tree/.sudocode/specs.jsonl +0 -3
  360. package/references/skill-tree/CLAUDE.md +0 -126
  361. package/references/skill-tree/README.md +0 -372
  362. package/references/skill-tree/docs/GAPS_v1.md +0 -221
  363. package/references/skill-tree/docs/INTEGRATION_PLAN.md +0 -467
  364. package/references/skill-tree/docs/TODOS.md +0 -91
  365. package/references/skill-tree/docs/anthropic_skill_guide.md +0 -1364
  366. package/references/skill-tree/docs/design/federated-skill-trees.md +0 -524
  367. package/references/skill-tree/docs/design/multi-agent-sync.md +0 -759
  368. package/references/skill-tree/docs/scraper/BRAINSTORM.md +0 -583
  369. package/references/skill-tree/docs/scraper/POC_PLAN.md +0 -420
  370. package/references/skill-tree/docs/scraper/README.md +0 -170
  371. package/references/skill-tree/examples/basic-usage.ts +0 -164
  372. package/references/skill-tree/package-lock.json +0 -1852
  373. package/references/skill-tree/package.json +0 -66
  374. package/references/skill-tree/scraper/README.md +0 -123
  375. package/references/skill-tree/scraper/docs/DESIGN.md +0 -683
  376. package/references/skill-tree/scraper/docs/PLAN.md +0 -336
  377. package/references/skill-tree/scraper/drizzle.config.ts +0 -10
  378. package/references/skill-tree/scraper/package-lock.json +0 -6329
  379. package/references/skill-tree/scraper/package.json +0 -68
  380. package/references/skill-tree/scraper/test/fixtures/invalid-skill/missing-description.md +0 -7
  381. package/references/skill-tree/scraper/test/fixtures/invalid-skill/missing-name.md +0 -7
  382. package/references/skill-tree/scraper/test/fixtures/minimal-skill/SKILL.md +0 -27
  383. package/references/skill-tree/scraper/test/fixtures/skill-json/SKILL.json +0 -21
  384. package/references/skill-tree/scraper/test/fixtures/skill-with-meta/SKILL.md +0 -54
  385. package/references/skill-tree/scraper/test/fixtures/skill-with-meta/_meta.json +0 -24
  386. package/references/skill-tree/scraper/test/fixtures/valid-skill/SKILL.md +0 -93
  387. package/references/skill-tree/scraper/test/fixtures/valid-skill/_meta.json +0 -22
  388. package/references/skill-tree/scraper/tsup.config.ts +0 -14
  389. package/references/skill-tree/scraper/vitest.config.ts +0 -17
  390. package/references/skill-tree/scripts/convert-to-vitest.ts +0 -166
  391. package/references/skill-tree/skills/skill-writer/SKILL.md +0 -339
  392. package/references/skill-tree/skills/skill-writer/references/examples.md +0 -326
  393. package/references/skill-tree/skills/skill-writer/references/patterns.md +0 -210
  394. package/references/skill-tree/skills/skill-writer/references/quality-checklist.md +0 -123
  395. package/references/skill-tree/test/run-all.ts +0 -106
  396. package/references/skill-tree/test/utils.ts +0 -128
  397. package/references/skill-tree/vitest.config.ts +0 -16
@@ -0,0 +1,232 @@
1
+ import { describe, it, expect, beforeEach, afterEach } from 'vitest';
2
+ import { UnifiedLearningPipeline, createUnifiedPipeline } from '../../src/learning/unified-pipeline.js';
3
+ import { MemorySystem } from '../../src/memory/system.js';
4
+ import { createTrajectory, type Trajectory } from '../../src/types/trajectory.js';
5
+ import { createTask } from '../../src/types/task.js';
6
+ import { createStep } from '../../src/types/step.js';
7
+ import { successOutcome, failureOutcome } from '../../src/types/outcome.js';
8
+ import { createPlaybook } from '../../src/types/playbook.js';
9
+ import { mkdtemp, rm } from 'node:fs/promises';
10
+ import { join } from 'node:path';
11
+ import { tmpdir } from 'node:os';
12
+ import { createSqlitePersistence } from '../../src/persistence/index.js';
13
+ import type { SqlitePersistence } from '../../src/persistence/index.js';
14
+ import type { Playbook } from '../../src/types/playbook.js';
15
+
16
+ function makeTrajectory(overrides?: {
17
+ success?: boolean;
18
+ domain?: string;
19
+ description?: string;
20
+ }): Trajectory {
21
+ const success = overrides?.success ?? true;
22
+ return createTrajectory({
23
+ task: createTask({
24
+ description: overrides?.description ?? 'Fix the typescript import error',
25
+ domain: overrides?.domain ?? 'typescript',
26
+ }),
27
+ steps: [
28
+ createStep({
29
+ thought: 'Let me check the imports',
30
+ action: 'ReadFile src/index.ts',
31
+ observation: 'File content: import { foo } from "./bar"',
32
+ }),
33
+ createStep({
34
+ thought: 'The import path is wrong',
35
+ action: 'EditFile src/index.ts',
36
+ observation: 'File updated successfully',
37
+ }),
38
+ ],
39
+ outcome: success
40
+ ? successOutcome('Fixed import path')
41
+ : failureOutcome('Could not resolve import'),
42
+ agentId: 'test-agent',
43
+ });
44
+ }
45
+
46
+ function makePlaybook(overrides?: Partial<{
47
+ name: string;
48
+ domain: string;
49
+ successCount: number;
50
+ failureCount: number;
51
+ confidence: number;
52
+ }>): Playbook {
53
+ return createPlaybook({
54
+ name: overrides?.name ?? 'test-playbook',
55
+ applicability: {
56
+ situations: ['fix import'],
57
+ domains: [overrides?.domain ?? 'typescript'],
58
+ triggers: ['import error'],
59
+ antiPatterns: [],
60
+ },
61
+ guidance: {
62
+ strategy: 'Check and fix import paths',
63
+ tactics: ['Read the file', 'Fix the path'],
64
+ verification: [],
65
+ commonPitfalls: [],
66
+ },
67
+ successCount: overrides?.successCount ?? 5,
68
+ failureCount: overrides?.failureCount ?? 1,
69
+ confidence: overrides?.confidence ?? 0.8,
70
+ });
71
+ }
72
+
73
+ describe('UnifiedLearningPipeline — efficacy maintenance', () => {
74
+ let tempDir: string;
75
+ let memory: MemorySystem;
76
+ let pipeline: UnifiedLearningPipeline;
77
+ let persistence: SqlitePersistence;
78
+
79
+ beforeEach(async () => {
80
+ tempDir = await mkdtemp(join(tmpdir(), 'atlas-efficacy-test-'));
81
+ persistence = createSqlitePersistence({ baseDir: tempDir });
82
+ await persistence.init();
83
+ memory = new MemorySystem(persistence, tempDir);
84
+ await memory.init();
85
+ });
86
+
87
+ afterEach(async () => {
88
+ await memory.close();
89
+ persistence.close();
90
+ await rm(tempDir, { recursive: true, force: true });
91
+ });
92
+
93
+ it('should register efficacy tasks by default', async () => {
94
+ pipeline = createUnifiedPipeline(memory, {
95
+ batch: { learning: { minTrajectories: 100 }, energy: { countThreshold: 100 } },
96
+ features: { healing: false },
97
+ }, persistence);
98
+ await pipeline.init();
99
+
100
+ const stats = pipeline.getStats();
101
+ expect(stats.maintenanceTasks).toContain('playbook-decay-detection');
102
+ expect(stats.maintenanceTasks).toContain('playbook-efficacy-audit');
103
+ expect(stats.maintenanceTasks).toContain('playbook-lifecycle-review');
104
+ });
105
+
106
+ it('should NOT register efficacy tasks when feature is disabled', async () => {
107
+ pipeline = createUnifiedPipeline(memory, {
108
+ batch: { learning: { minTrajectories: 100 }, energy: { countThreshold: 100 } },
109
+ features: { healing: false, efficacy: false },
110
+ }, persistence);
111
+ await pipeline.init();
112
+
113
+ const stats = pipeline.getStats();
114
+ expect(stats.maintenanceTasks).not.toContain('playbook-decay-detection');
115
+ expect(stats.maintenanceTasks).not.toContain('playbook-efficacy-audit');
116
+ expect(stats.maintenanceTasks).not.toContain('playbook-lifecycle-review');
117
+ });
118
+
119
+ it('decay detection should skip when no playbooks exist', async () => {
120
+ pipeline = createUnifiedPipeline(memory, {
121
+ batch: { learning: { minTrajectories: 100 }, energy: { countThreshold: 100 } },
122
+ features: { healing: false },
123
+ }, persistence);
124
+ await pipeline.init();
125
+
126
+ const result = await pipeline.runMaintenance({ force: true });
127
+
128
+ expect(result.ran).toBe(true);
129
+ const decayTask = result.taskResults.find(t => t.taskName === 'playbook-decay-detection');
130
+ expect(decayTask).toBeDefined();
131
+ expect(decayTask!.success).toBe(true);
132
+ expect((decayTask!.details as Record<string, unknown>).skipped).toBe(true);
133
+ });
134
+
135
+ it('decay detection should run with playbooks and annotations', async () => {
136
+ // Add playbooks
137
+ const pb = makePlaybook({ name: 'import-fixer', successCount: 10, failureCount: 5 });
138
+ await memory.playbooks.add(pb);
139
+
140
+ pipeline = createUnifiedPipeline(memory, {
141
+ batch: { learning: { minTrajectories: 100 }, energy: { countThreshold: 100 } },
142
+ features: { healing: false },
143
+ efficacy: { minPlaybooks: 1, minAnnotations: 0, lifecycleReviewFrequency: 3 },
144
+ }, persistence);
145
+ await pipeline.init();
146
+
147
+ const result = await pipeline.runMaintenance({ force: true });
148
+
149
+ const decayTask = result.taskResults.find(t => t.taskName === 'playbook-decay-detection');
150
+ expect(decayTask).toBeDefined();
151
+ expect(decayTask!.success).toBe(true);
152
+ const details = decayTask!.details as Record<string, unknown>;
153
+ expect(details.skipped).toBeUndefined();
154
+ expect(typeof details.healthyCount).toBe('number');
155
+ });
156
+
157
+ it('efficacy audit should skip when no decay results found flagged playbooks', async () => {
158
+ const pb = makePlaybook({ name: 'stable-playbook', confidence: 0.9 });
159
+ await memory.playbooks.add(pb);
160
+
161
+ pipeline = createUnifiedPipeline(memory, {
162
+ batch: { learning: { minTrajectories: 100 }, energy: { countThreshold: 100 } },
163
+ features: { healing: false },
164
+ efficacy: { minPlaybooks: 1, minAnnotations: 0, lifecycleReviewFrequency: 3 },
165
+ }, persistence);
166
+ await pipeline.init();
167
+
168
+ const result = await pipeline.runMaintenance({ force: true });
169
+
170
+ const auditTask = result.taskResults.find(t => t.taskName === 'playbook-efficacy-audit');
171
+ expect(auditTask).toBeDefined();
172
+ expect(auditTask!.success).toBe(true);
173
+ const details = auditTask!.details as Record<string, unknown>;
174
+ // Should be skipped because decay detection found no flagged playbooks
175
+ expect(details.skipped).toBe(true);
176
+ });
177
+
178
+ it('lifecycle review should respect frequency setting', async () => {
179
+ const pb = makePlaybook({ name: 'lifecycle-test' });
180
+ await memory.playbooks.add(pb);
181
+
182
+ pipeline = createUnifiedPipeline(memory, {
183
+ batch: { learning: { minTrajectories: 100 }, energy: { countThreshold: 100 } },
184
+ features: { healing: false },
185
+ efficacy: { minPlaybooks: 1, minAnnotations: 0, lifecycleReviewFrequency: 2 },
186
+ }, persistence);
187
+ await pipeline.init();
188
+
189
+ // First maintenance (cycle 0) — should run (0 % 2 === 0)
190
+ const result1 = await pipeline.runMaintenance({ force: true });
191
+ const lifecycleTask1 = result1.taskResults.find(t => t.taskName === 'playbook-lifecycle-review');
192
+ expect(lifecycleTask1).toBeDefined();
193
+ const details1 = lifecycleTask1!.details as Record<string, unknown>;
194
+ expect(details1.totalPlaybooks).toBeDefined();
195
+
196
+ // Second maintenance (cycle 1) — should skip (1 % 2 !== 0)
197
+ const result2 = await pipeline.runMaintenance({ force: true });
198
+ const lifecycleTask2 = result2.taskResults.find(t => t.taskName === 'playbook-lifecycle-review');
199
+ expect(lifecycleTask2).toBeDefined();
200
+ const details2 = lifecycleTask2!.details as Record<string, unknown>;
201
+ expect(details2.skipped).toBe(true);
202
+
203
+ // Third maintenance (cycle 2) — should run again (2 % 2 === 0)
204
+ const result3 = await pipeline.runMaintenance({ force: true });
205
+ const lifecycleTask3 = result3.taskResults.find(t => t.taskName === 'playbook-lifecycle-review');
206
+ expect(lifecycleTask3).toBeDefined();
207
+ const details3 = lifecycleTask3!.details as Record<string, unknown>;
208
+ expect(details3.totalPlaybooks).toBeDefined();
209
+ });
210
+
211
+ it('lifecycle review returns portfolio snapshot data', async () => {
212
+ await memory.playbooks.add(makePlaybook({ name: 'pb-1', confidence: 0.9 }));
213
+ await memory.playbooks.add(makePlaybook({ name: 'pb-2', confidence: 0.4, domain: 'python' }));
214
+
215
+ pipeline = createUnifiedPipeline(memory, {
216
+ batch: { learning: { minTrajectories: 100 }, energy: { countThreshold: 100 } },
217
+ features: { healing: false },
218
+ efficacy: { minPlaybooks: 1, minAnnotations: 0, lifecycleReviewFrequency: 1 },
219
+ }, persistence);
220
+ await pipeline.init();
221
+
222
+ const result = await pipeline.runMaintenance({ force: true });
223
+
224
+ const lifecycleTask = result.taskResults.find(t => t.taskName === 'playbook-lifecycle-review');
225
+ expect(lifecycleTask).toBeDefined();
226
+ const details = lifecycleTask!.details as Record<string, unknown>;
227
+ expect(details.totalPlaybooks).toBe(2);
228
+ expect(details.snapshot).toBeDefined();
229
+ const snapshot = details.snapshot as Record<string, unknown>;
230
+ expect(snapshot.confidenceBands).toBeDefined();
231
+ });
232
+ });
@@ -0,0 +1,167 @@
1
+ import { describe, it, expect } from 'vitest';
2
+ import {
3
+ getCandidates,
4
+ type ItemResolver,
5
+ type CandidateRetrievalOptions,
6
+ } from '../../src/memory/candidate-retrieval.js';
7
+ import type { InvertedIndex } from '../../src/embeddings/inverted-index.js';
8
+
9
+ /** Create a mock inverted index */
10
+ function createMockIndex(candidateIds: string[]): InvertedIndex {
11
+ return {
12
+ getCandidates: (_query: string, _maxCandidates: number) => candidateIds,
13
+ add: () => {},
14
+ remove: () => {},
15
+ clear: () => {},
16
+ size: candidateIds.length,
17
+ } as unknown as InvertedIndex;
18
+ }
19
+
20
+ /** Create a mock item resolver */
21
+ function createMockResolver<T>(items: Map<string, T>): ItemResolver<T> {
22
+ return {
23
+ get: (id: string) => items.get(id),
24
+ values: () => Array.from(items.values()),
25
+ };
26
+ }
27
+
28
+ describe('getCandidates', () => {
29
+ it('should use index results when enough candidates found', () => {
30
+ const items = new Map([
31
+ ['a', { id: 'a', data: 1 }],
32
+ ['b', { id: 'b', data: 2 }],
33
+ ['c', { id: 'c', data: 3 }],
34
+ ['d', { id: 'd', data: 4 }],
35
+ ]);
36
+
37
+ const index = createMockIndex(['a', 'b', 'c']);
38
+ const resolver = createMockResolver(items);
39
+ const options: CandidateRetrievalOptions = { k: 2 };
40
+
41
+ const result = getCandidates('query', index, resolver, options);
42
+
43
+ // Index returned 3 candidates >= k=2, so resolve by ID
44
+ expect(result).toHaveLength(3);
45
+ expect(result.map((r: any) => r.id)).toEqual(['a', 'b', 'c']);
46
+ });
47
+
48
+ it('should fall back to all values when index returns too few', () => {
49
+ const items = new Map([
50
+ ['a', { id: 'a', data: 1 }],
51
+ ['b', { id: 'b', data: 2 }],
52
+ ['c', { id: 'c', data: 3 }],
53
+ ]);
54
+
55
+ // Index returns only 1 candidate, but k=5
56
+ const index = createMockIndex(['a']);
57
+ const resolver = createMockResolver(items);
58
+ const options: CandidateRetrievalOptions = { k: 5 };
59
+
60
+ const result = getCandidates('query', index, resolver, options);
61
+
62
+ // Falls back to all values
63
+ expect(result).toHaveLength(3);
64
+ });
65
+
66
+ it('should use provided fallbackItems instead of resolver.values()', () => {
67
+ const items = new Map([
68
+ ['a', { id: 'a', data: 1 }],
69
+ ['b', { id: 'b', data: 2 }],
70
+ ]);
71
+
72
+ const index = createMockIndex([]); // Empty — triggers fallback
73
+ const resolver = createMockResolver(items);
74
+ const fallback = [{ id: 'x', data: 99 }];
75
+ const options: CandidateRetrievalOptions = { k: 5 };
76
+
77
+ const result = getCandidates('query', index, resolver, options, fallback);
78
+
79
+ expect(result).toEqual(fallback);
80
+ });
81
+
82
+ it('should skip unresolvable IDs from index', () => {
83
+ const items = new Map([
84
+ ['a', { id: 'a', data: 1 }],
85
+ // 'b' is missing from resolver
86
+ ]);
87
+
88
+ const index = createMockIndex(['a', 'b', 'missing']);
89
+ const resolver = createMockResolver(items);
90
+ const options: CandidateRetrievalOptions = { k: 2 };
91
+
92
+ const result = getCandidates('query', index, resolver, options);
93
+
94
+ // 3 candidates from index >= k=2, but only 'a' resolves
95
+ expect(result).toHaveLength(1);
96
+ expect((result[0] as any).id).toBe('a');
97
+ });
98
+
99
+ it('should respect candidateMultiplier option', () => {
100
+ let capturedMax = 0;
101
+ const mockIndex = {
102
+ getCandidates: (_q: string, max: number) => {
103
+ capturedMax = max;
104
+ return ['a', 'b'];
105
+ },
106
+ } as unknown as InvertedIndex;
107
+
108
+ const items = new Map([['a', 'A'], ['b', 'B']]);
109
+ const resolver = createMockResolver(items);
110
+
111
+ getCandidates('q', mockIndex, resolver, { k: 5, candidateMultiplier: 3 });
112
+
113
+ // maxCandidates = max(k * multiplier, minCandidates) = max(15, 50) = 50
114
+ expect(capturedMax).toBe(50);
115
+ });
116
+
117
+ it('should respect minCandidates option', () => {
118
+ let capturedMax = 0;
119
+ const mockIndex = {
120
+ getCandidates: (_q: string, max: number) => {
121
+ capturedMax = max;
122
+ return [];
123
+ },
124
+ } as unknown as InvertedIndex;
125
+
126
+ const resolver = createMockResolver(new Map());
127
+
128
+ getCandidates('q', mockIndex, resolver, { k: 2, candidateMultiplier: 10, minCandidates: 100 });
129
+
130
+ // maxCandidates = max(2 * 10, 100) = 100
131
+ expect(capturedMax).toBe(100);
132
+ });
133
+
134
+ it('should use default multiplier=10 and minCandidates=50', () => {
135
+ let capturedMax = 0;
136
+ const mockIndex = {
137
+ getCandidates: (_q: string, max: number) => {
138
+ capturedMax = max;
139
+ return [];
140
+ },
141
+ } as unknown as InvertedIndex;
142
+
143
+ const resolver = createMockResolver(new Map());
144
+
145
+ getCandidates('q', mockIndex, resolver, { k: 3 });
146
+
147
+ // maxCandidates = max(3 * 10, 50) = 50
148
+ expect(capturedMax).toBe(50);
149
+ });
150
+
151
+ it('should fall back to full scan when index returns enough IDs but none resolve', () => {
152
+ const items = new Map([
153
+ ['real', { id: 'real', data: 1 }],
154
+ ]);
155
+
156
+ // Index returns 5 stale/invalid IDs
157
+ const index = createMockIndex(['gone1', 'gone2', 'gone3', 'gone4', 'gone5']);
158
+ const resolver = createMockResolver(items);
159
+ const options: CandidateRetrievalOptions = { k: 3 };
160
+
161
+ const result = getCandidates('query', index, resolver, options);
162
+
163
+ // 5 >= k=3, but none resolve → falls back to full scan
164
+ expect(result).toHaveLength(1);
165
+ expect((result[0] as any).id).toBe('real');
166
+ });
167
+ });