cognitive-core 0.2.0 → 0.2.2

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Files changed (397) hide show
  1. package/.claude/settings.json +111 -2
  2. package/.sessionlog/settings.json +4 -0
  3. package/dist/atlas.d.ts +10 -0
  4. package/dist/atlas.d.ts.map +1 -1
  5. package/dist/atlas.js +65 -0
  6. package/dist/atlas.js.map +1 -1
  7. package/dist/index.d.ts +1 -1
  8. package/dist/index.d.ts.map +1 -1
  9. package/dist/index.js +5 -1
  10. package/dist/index.js.map +1 -1
  11. package/dist/learning/index.d.ts +1 -1
  12. package/dist/learning/index.d.ts.map +1 -1
  13. package/dist/learning/index.js.map +1 -1
  14. package/dist/learning/pipeline.d.ts +4 -31
  15. package/dist/learning/pipeline.d.ts.map +1 -1
  16. package/dist/learning/pipeline.js +12 -64
  17. package/dist/learning/pipeline.js.map +1 -1
  18. package/dist/learning/unified-pipeline.d.ts +30 -0
  19. package/dist/learning/unified-pipeline.d.ts.map +1 -1
  20. package/dist/learning/unified-pipeline.js +207 -0
  21. package/dist/learning/unified-pipeline.js.map +1 -1
  22. package/dist/memory/candidate-retrieval.d.ts.map +1 -1
  23. package/dist/memory/candidate-retrieval.js +3 -1
  24. package/dist/memory/candidate-retrieval.js.map +1 -1
  25. package/dist/memory/curated-loader.d.ts +21 -4
  26. package/dist/memory/curated-loader.d.ts.map +1 -1
  27. package/dist/memory/curated-loader.js +53 -16
  28. package/dist/memory/curated-loader.js.map +1 -1
  29. package/dist/memory/index.d.ts +2 -1
  30. package/dist/memory/index.d.ts.map +1 -1
  31. package/dist/memory/index.js +3 -1
  32. package/dist/memory/index.js.map +1 -1
  33. package/dist/memory/playbook.d.ts +6 -0
  34. package/dist/memory/playbook.d.ts.map +1 -1
  35. package/dist/memory/playbook.js +15 -0
  36. package/dist/memory/playbook.js.map +1 -1
  37. package/dist/memory/source-resolver.d.ts +120 -0
  38. package/dist/memory/source-resolver.d.ts.map +1 -0
  39. package/dist/memory/source-resolver.js +300 -0
  40. package/dist/memory/source-resolver.js.map +1 -0
  41. package/dist/types/config.d.ts +141 -0
  42. package/dist/types/config.d.ts.map +1 -1
  43. package/dist/types/config.js +40 -0
  44. package/dist/types/config.js.map +1 -1
  45. package/dist/types/index.d.ts +1 -1
  46. package/dist/types/index.d.ts.map +1 -1
  47. package/dist/types/index.js +1 -1
  48. package/dist/types/index.js.map +1 -1
  49. package/dist/utils/error-classifier.js +8 -8
  50. package/dist/utils/error-classifier.js.map +1 -1
  51. package/dist/workspace/efficacy-toolkit.d.ts +164 -0
  52. package/dist/workspace/efficacy-toolkit.d.ts.map +1 -0
  53. package/dist/workspace/efficacy-toolkit.js +281 -0
  54. package/dist/workspace/efficacy-toolkit.js.map +1 -0
  55. package/dist/workspace/index.d.ts +2 -1
  56. package/dist/workspace/index.d.ts.map +1 -1
  57. package/dist/workspace/index.js +3 -1
  58. package/dist/workspace/index.js.map +1 -1
  59. package/dist/workspace/templates/index.d.ts +3 -0
  60. package/dist/workspace/templates/index.d.ts.map +1 -1
  61. package/dist/workspace/templates/index.js +6 -0
  62. package/dist/workspace/templates/index.js.map +1 -1
  63. package/dist/workspace/templates/playbook-decay-detection.d.ts +46 -0
  64. package/dist/workspace/templates/playbook-decay-detection.d.ts.map +1 -0
  65. package/dist/workspace/templates/playbook-decay-detection.js +197 -0
  66. package/dist/workspace/templates/playbook-decay-detection.js.map +1 -0
  67. package/dist/workspace/templates/playbook-efficacy-audit.d.ts +46 -0
  68. package/dist/workspace/templates/playbook-efficacy-audit.d.ts.map +1 -0
  69. package/dist/workspace/templates/playbook-efficacy-audit.js +160 -0
  70. package/dist/workspace/templates/playbook-efficacy-audit.js.map +1 -0
  71. package/dist/workspace/templates/playbook-lifecycle-review.d.ts +51 -0
  72. package/dist/workspace/templates/playbook-lifecycle-review.d.ts.map +1 -0
  73. package/dist/workspace/templates/playbook-lifecycle-review.js +187 -0
  74. package/dist/workspace/templates/playbook-lifecycle-review.js.map +1 -0
  75. package/dist/workspace/types.d.ts +12 -54
  76. package/dist/workspace/types.d.ts.map +1 -1
  77. package/dist/workspace/types.js.map +1 -1
  78. package/package.json +8 -2
  79. package/playbooks/compound-engineering/adversarial-review.json +51 -0
  80. package/playbooks/compound-engineering/agent-native-architecture.json +59 -0
  81. package/playbooks/compound-engineering/agent-native-review.json +54 -0
  82. package/playbooks/compound-engineering/api-contract-review.json +52 -0
  83. package/playbooks/compound-engineering/brainstorm-requirements.json +55 -0
  84. package/playbooks/compound-engineering/bug-reproduction.json +62 -0
  85. package/playbooks/compound-engineering/confidence-calibration.json +49 -0
  86. package/playbooks/compound-engineering/correctness-review.json +49 -0
  87. package/playbooks/compound-engineering/data-migration-safety.json +59 -0
  88. package/playbooks/compound-engineering/deployment-verification.json +63 -0
  89. package/playbooks/compound-engineering/error-recovery-patterns.json +53 -0
  90. package/playbooks/compound-engineering/implementation-planning.json +64 -0
  91. package/playbooks/compound-engineering/issue-pattern-analysis.json +53 -0
  92. package/playbooks/compound-engineering/knowledge-compounding.json +63 -0
  93. package/playbooks/compound-engineering/learnings-research.json +54 -0
  94. package/playbooks/compound-engineering/maintainability-review.json +49 -0
  95. package/playbooks/compound-engineering/performance-review.json +54 -0
  96. package/playbooks/compound-engineering/plan-adversarial-review.json +56 -0
  97. package/playbooks/compound-engineering/plan-feasibility-review.json +56 -0
  98. package/playbooks/compound-engineering/project-standards-review.json +52 -0
  99. package/playbooks/compound-engineering/reliability-review.json +53 -0
  100. package/playbooks/compound-engineering/review-orchestration.json +64 -0
  101. package/playbooks/compound-engineering/security-review.json +54 -0
  102. package/playbooks/compound-engineering/systematic-execution.json +64 -0
  103. package/playbooks/compound-engineering/testing-review.json +50 -0
  104. package/src/atlas.ts +96 -0
  105. package/src/index.ts +27 -0
  106. package/src/learning/index.ts +1 -0
  107. package/src/learning/unified-pipeline.ts +271 -1
  108. package/src/memory/candidate-retrieval.ts +2 -1
  109. package/src/memory/curated-loader.ts +69 -16
  110. package/src/memory/index.ts +16 -0
  111. package/src/memory/playbook.ts +19 -0
  112. package/src/memory/source-resolver.ts +422 -0
  113. package/src/types/config.ts +46 -0
  114. package/src/types/index.ts +4 -0
  115. package/src/utils/error-classifier.ts +8 -8
  116. package/src/workspace/efficacy-toolkit.ts +496 -0
  117. package/src/workspace/index.ts +29 -0
  118. package/src/workspace/templates/index.ts +24 -0
  119. package/src/workspace/templates/playbook-decay-detection.ts +272 -0
  120. package/src/workspace/templates/playbook-efficacy-audit.ts +246 -0
  121. package/src/workspace/templates/playbook-lifecycle-review.ts +274 -0
  122. package/src/workspace/types.ts +22 -78
  123. package/tests/fixtures/behavioral-trajectories.ts +210 -0
  124. package/tests/integration/curated-sources-e2e.test.ts +502 -0
  125. package/tests/integration/pipeline-data-correctness.test.ts +794 -0
  126. package/tests/learning/meta-learner.test.ts +418 -0
  127. package/tests/learning/pipeline-memory-updates.test.ts +721 -0
  128. package/tests/learning/unified-pipeline-efficacy.test.ts +232 -0
  129. package/tests/memory/candidate-retrieval.test.ts +167 -0
  130. package/tests/memory/compound-engineering-seed.test.ts +338 -0
  131. package/tests/memory/curated-loader-extended.test.ts +225 -0
  132. package/tests/memory/meta.test.ts +399 -0
  133. package/tests/memory/playbook-quality-validation.test.ts +430 -0
  134. package/tests/memory/source-resolver.test.ts +700 -0
  135. package/tests/search/evaluator.test.ts +257 -0
  136. package/tests/search/verification-runner.test.ts +357 -0
  137. package/tests/utils/error-classifier.test.ts +149 -0
  138. package/tests/utils/trajectory-helpers.test.ts +163 -0
  139. package/tests/workspace/efficacy-toolkit.test.ts +404 -0
  140. package/tests/workspace/templates/playbook-efficacy.test.ts +377 -0
  141. package/.claude/settings.local.json +0 -11
  142. package/dist/learning/llm-extractor.d.ts +0 -88
  143. package/dist/learning/llm-extractor.d.ts.map +0 -1
  144. package/dist/learning/llm-extractor.js +0 -372
  145. package/dist/learning/llm-extractor.js.map +0 -1
  146. package/dist/learning/loop-coordinator.d.ts +0 -61
  147. package/dist/learning/loop-coordinator.d.ts.map +0 -1
  148. package/dist/learning/loop-coordinator.js +0 -96
  149. package/dist/learning/loop-coordinator.js.map +0 -1
  150. package/references/agent-workspace/CLAUDE.md +0 -74
  151. package/references/agent-workspace/README.md +0 -587
  152. package/references/agent-workspace/media/banner.png +0 -0
  153. package/references/agent-workspace/package-lock.json +0 -2061
  154. package/references/agent-workspace/package.json +0 -54
  155. package/references/agent-workspace/src/handle.ts +0 -122
  156. package/references/agent-workspace/src/index.ts +0 -32
  157. package/references/agent-workspace/src/manager.ts +0 -102
  158. package/references/agent-workspace/src/readers/json.ts +0 -71
  159. package/references/agent-workspace/src/readers/markdown.ts +0 -37
  160. package/references/agent-workspace/src/readers/raw.ts +0 -27
  161. package/references/agent-workspace/src/types.ts +0 -68
  162. package/references/agent-workspace/src/validation.ts +0 -93
  163. package/references/agent-workspace/src/writers/json.ts +0 -17
  164. package/references/agent-workspace/src/writers/markdown.ts +0 -27
  165. package/references/agent-workspace/src/writers/raw.ts +0 -22
  166. package/references/agent-workspace/tests/errors.test.ts +0 -652
  167. package/references/agent-workspace/tests/handle.test.ts +0 -144
  168. package/references/agent-workspace/tests/manager.test.ts +0 -124
  169. package/references/agent-workspace/tests/readers.test.ts +0 -205
  170. package/references/agent-workspace/tests/validation.test.ts +0 -196
  171. package/references/agent-workspace/tests/writers.test.ts +0 -108
  172. package/references/agent-workspace/tsconfig.json +0 -20
  173. package/references/agent-workspace/tsup.config.ts +0 -9
  174. package/references/minimem/.claude/settings.json +0 -7
  175. package/references/minimem/.sudocode/issues.jsonl +0 -18
  176. package/references/minimem/.sudocode/specs.jsonl +0 -1
  177. package/references/minimem/CLAUDE.md +0 -310
  178. package/references/minimem/README.md +0 -556
  179. package/references/minimem/claude-plugin/.claude-plugin/plugin.json +0 -10
  180. package/references/minimem/claude-plugin/.mcp.json +0 -7
  181. package/references/minimem/claude-plugin/README.md +0 -158
  182. package/references/minimem/claude-plugin/commands/recall.md +0 -47
  183. package/references/minimem/claude-plugin/commands/remember.md +0 -41
  184. package/references/minimem/claude-plugin/hooks/__tests__/hooks.test.ts +0 -272
  185. package/references/minimem/claude-plugin/hooks/hooks.json +0 -27
  186. package/references/minimem/claude-plugin/hooks/session-end.sh +0 -86
  187. package/references/minimem/claude-plugin/hooks/session-start.sh +0 -85
  188. package/references/minimem/claude-plugin/skills/memory/SKILL.md +0 -108
  189. package/references/minimem/package-lock.json +0 -5373
  190. package/references/minimem/package.json +0 -60
  191. package/references/minimem/scripts/postbuild.js +0 -35
  192. package/references/minimem/src/__tests__/edge-cases.test.ts +0 -371
  193. package/references/minimem/src/__tests__/errors.test.ts +0 -265
  194. package/references/minimem/src/__tests__/helpers.ts +0 -199
  195. package/references/minimem/src/__tests__/internal.test.ts +0 -407
  196. package/references/minimem/src/__tests__/knowledge.test.ts +0 -287
  197. package/references/minimem/src/__tests__/minimem.integration.test.ts +0 -1127
  198. package/references/minimem/src/__tests__/session.test.ts +0 -190
  199. package/references/minimem/src/cli/__tests__/commands.test.ts +0 -759
  200. package/references/minimem/src/cli/commands/__tests__/conflicts.test.ts +0 -141
  201. package/references/minimem/src/cli/commands/append.ts +0 -76
  202. package/references/minimem/src/cli/commands/config.ts +0 -262
  203. package/references/minimem/src/cli/commands/conflicts.ts +0 -413
  204. package/references/minimem/src/cli/commands/daemon.ts +0 -169
  205. package/references/minimem/src/cli/commands/index.ts +0 -12
  206. package/references/minimem/src/cli/commands/init.ts +0 -88
  207. package/references/minimem/src/cli/commands/mcp.ts +0 -177
  208. package/references/minimem/src/cli/commands/push-pull.ts +0 -213
  209. package/references/minimem/src/cli/commands/search.ts +0 -158
  210. package/references/minimem/src/cli/commands/status.ts +0 -84
  211. package/references/minimem/src/cli/commands/sync-init.ts +0 -290
  212. package/references/minimem/src/cli/commands/sync.ts +0 -70
  213. package/references/minimem/src/cli/commands/upsert.ts +0 -197
  214. package/references/minimem/src/cli/config.ts +0 -584
  215. package/references/minimem/src/cli/index.ts +0 -264
  216. package/references/minimem/src/cli/shared.ts +0 -161
  217. package/references/minimem/src/cli/sync/__tests__/central.test.ts +0 -152
  218. package/references/minimem/src/cli/sync/__tests__/conflicts.test.ts +0 -209
  219. package/references/minimem/src/cli/sync/__tests__/daemon.test.ts +0 -118
  220. package/references/minimem/src/cli/sync/__tests__/detection.test.ts +0 -207
  221. package/references/minimem/src/cli/sync/__tests__/integration.test.ts +0 -476
  222. package/references/minimem/src/cli/sync/__tests__/registry.test.ts +0 -363
  223. package/references/minimem/src/cli/sync/__tests__/state.test.ts +0 -255
  224. package/references/minimem/src/cli/sync/__tests__/validation.test.ts +0 -193
  225. package/references/minimem/src/cli/sync/__tests__/watcher.test.ts +0 -178
  226. package/references/minimem/src/cli/sync/central.ts +0 -292
  227. package/references/minimem/src/cli/sync/conflicts.ts +0 -204
  228. package/references/minimem/src/cli/sync/daemon.ts +0 -407
  229. package/references/minimem/src/cli/sync/detection.ts +0 -138
  230. package/references/minimem/src/cli/sync/index.ts +0 -107
  231. package/references/minimem/src/cli/sync/operations.ts +0 -373
  232. package/references/minimem/src/cli/sync/registry.ts +0 -279
  233. package/references/minimem/src/cli/sync/state.ts +0 -355
  234. package/references/minimem/src/cli/sync/validation.ts +0 -206
  235. package/references/minimem/src/cli/sync/watcher.ts +0 -234
  236. package/references/minimem/src/cli/version.ts +0 -34
  237. package/references/minimem/src/core/index.ts +0 -9
  238. package/references/minimem/src/core/indexer.ts +0 -628
  239. package/references/minimem/src/core/searcher.ts +0 -221
  240. package/references/minimem/src/db/schema.ts +0 -183
  241. package/references/minimem/src/db/sqlite-vec.ts +0 -24
  242. package/references/minimem/src/embeddings/__tests__/embeddings.test.ts +0 -431
  243. package/references/minimem/src/embeddings/batch-gemini.ts +0 -392
  244. package/references/minimem/src/embeddings/batch-openai.ts +0 -409
  245. package/references/minimem/src/embeddings/embeddings.ts +0 -434
  246. package/references/minimem/src/index.ts +0 -109
  247. package/references/minimem/src/internal.ts +0 -299
  248. package/references/minimem/src/minimem.ts +0 -1276
  249. package/references/minimem/src/search/__tests__/hybrid.test.ts +0 -247
  250. package/references/minimem/src/search/graph.ts +0 -234
  251. package/references/minimem/src/search/hybrid.ts +0 -151
  252. package/references/minimem/src/search/search.ts +0 -256
  253. package/references/minimem/src/server/__tests__/mcp.test.ts +0 -341
  254. package/references/minimem/src/server/__tests__/tools.test.ts +0 -364
  255. package/references/minimem/src/server/mcp.ts +0 -326
  256. package/references/minimem/src/server/tools.ts +0 -720
  257. package/references/minimem/src/session.ts +0 -460
  258. package/references/minimem/tsconfig.json +0 -19
  259. package/references/minimem/tsup.config.ts +0 -26
  260. package/references/minimem/vitest.config.ts +0 -24
  261. package/references/sessionlog/.husky/pre-commit +0 -1
  262. package/references/sessionlog/.lintstagedrc.json +0 -4
  263. package/references/sessionlog/.prettierignore +0 -4
  264. package/references/sessionlog/.prettierrc.json +0 -11
  265. package/references/sessionlog/LICENSE +0 -21
  266. package/references/sessionlog/README.md +0 -453
  267. package/references/sessionlog/eslint.config.js +0 -58
  268. package/references/sessionlog/package-lock.json +0 -3672
  269. package/references/sessionlog/package.json +0 -65
  270. package/references/sessionlog/src/__tests__/agent-hooks.test.ts +0 -570
  271. package/references/sessionlog/src/__tests__/agent-registry.test.ts +0 -127
  272. package/references/sessionlog/src/__tests__/claude-code-hooks.test.ts +0 -225
  273. package/references/sessionlog/src/__tests__/claude-generator.test.ts +0 -46
  274. package/references/sessionlog/src/__tests__/commit-msg.test.ts +0 -86
  275. package/references/sessionlog/src/__tests__/cursor-agent.test.ts +0 -224
  276. package/references/sessionlog/src/__tests__/e2e-live.test.ts +0 -890
  277. package/references/sessionlog/src/__tests__/event-log.test.ts +0 -183
  278. package/references/sessionlog/src/__tests__/flush-sentinel.test.ts +0 -105
  279. package/references/sessionlog/src/__tests__/gemini-agent.test.ts +0 -375
  280. package/references/sessionlog/src/__tests__/git-hooks.test.ts +0 -78
  281. package/references/sessionlog/src/__tests__/hook-managers.test.ts +0 -121
  282. package/references/sessionlog/src/__tests__/lifecycle-tasks.test.ts +0 -759
  283. package/references/sessionlog/src/__tests__/opencode-agent.test.ts +0 -338
  284. package/references/sessionlog/src/__tests__/redaction.test.ts +0 -136
  285. package/references/sessionlog/src/__tests__/session-repo.test.ts +0 -353
  286. package/references/sessionlog/src/__tests__/session-store.test.ts +0 -166
  287. package/references/sessionlog/src/__tests__/setup-ccweb.test.ts +0 -466
  288. package/references/sessionlog/src/__tests__/skill-live.test.ts +0 -461
  289. package/references/sessionlog/src/__tests__/summarize.test.ts +0 -348
  290. package/references/sessionlog/src/__tests__/task-plan-e2e.test.ts +0 -610
  291. package/references/sessionlog/src/__tests__/task-plan-live.test.ts +0 -632
  292. package/references/sessionlog/src/__tests__/transcript-timestamp.test.ts +0 -121
  293. package/references/sessionlog/src/__tests__/types.test.ts +0 -166
  294. package/references/sessionlog/src/__tests__/utils.test.ts +0 -333
  295. package/references/sessionlog/src/__tests__/validation.test.ts +0 -103
  296. package/references/sessionlog/src/__tests__/worktree.test.ts +0 -57
  297. package/references/sessionlog/src/agent/agents/claude-code.ts +0 -1089
  298. package/references/sessionlog/src/agent/agents/cursor.ts +0 -361
  299. package/references/sessionlog/src/agent/agents/gemini-cli.ts +0 -632
  300. package/references/sessionlog/src/agent/agents/opencode.ts +0 -540
  301. package/references/sessionlog/src/agent/registry.ts +0 -143
  302. package/references/sessionlog/src/agent/session-types.ts +0 -113
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  304. package/references/sessionlog/src/cli.ts +0 -597
  305. package/references/sessionlog/src/commands/clean.ts +0 -133
  306. package/references/sessionlog/src/commands/disable.ts +0 -84
  307. package/references/sessionlog/src/commands/doctor.ts +0 -145
  308. package/references/sessionlog/src/commands/enable.ts +0 -202
  309. package/references/sessionlog/src/commands/explain.ts +0 -261
  310. package/references/sessionlog/src/commands/reset.ts +0 -105
  311. package/references/sessionlog/src/commands/resume.ts +0 -180
  312. package/references/sessionlog/src/commands/rewind.ts +0 -195
  313. package/references/sessionlog/src/commands/setup-ccweb.ts +0 -275
  314. package/references/sessionlog/src/commands/status.ts +0 -172
  315. package/references/sessionlog/src/config.ts +0 -165
  316. package/references/sessionlog/src/events/event-log.ts +0 -126
  317. package/references/sessionlog/src/git-operations.ts +0 -558
  318. package/references/sessionlog/src/hooks/git-hooks.ts +0 -165
  319. package/references/sessionlog/src/hooks/lifecycle.ts +0 -391
  320. package/references/sessionlog/src/index.ts +0 -650
  321. package/references/sessionlog/src/security/redaction.ts +0 -283
  322. package/references/sessionlog/src/session/state-machine.ts +0 -452
  323. package/references/sessionlog/src/store/checkpoint-store.ts +0 -509
  324. package/references/sessionlog/src/store/native-store.ts +0 -173
  325. package/references/sessionlog/src/store/provider-types.ts +0 -99
  326. package/references/sessionlog/src/store/session-store.ts +0 -266
  327. package/references/sessionlog/src/strategy/attribution.ts +0 -296
  328. package/references/sessionlog/src/strategy/common.ts +0 -207
  329. package/references/sessionlog/src/strategy/content-overlap.ts +0 -228
  330. package/references/sessionlog/src/strategy/manual-commit.ts +0 -988
  331. package/references/sessionlog/src/strategy/types.ts +0 -279
  332. package/references/sessionlog/src/summarize/claude-generator.ts +0 -115
  333. package/references/sessionlog/src/summarize/summarize.ts +0 -432
  334. package/references/sessionlog/src/types.ts +0 -508
  335. package/references/sessionlog/src/utils/chunk-files.ts +0 -49
  336. package/references/sessionlog/src/utils/commit-message.ts +0 -65
  337. package/references/sessionlog/src/utils/detect-agent.ts +0 -36
  338. package/references/sessionlog/src/utils/hook-managers.ts +0 -125
  339. package/references/sessionlog/src/utils/ide-tags.ts +0 -32
  340. package/references/sessionlog/src/utils/paths.ts +0 -79
  341. package/references/sessionlog/src/utils/preview-rewind.ts +0 -80
  342. package/references/sessionlog/src/utils/rewind-conflict.ts +0 -121
  343. package/references/sessionlog/src/utils/shadow-branch.ts +0 -109
  344. package/references/sessionlog/src/utils/string-utils.ts +0 -46
  345. package/references/sessionlog/src/utils/todo-extract.ts +0 -188
  346. package/references/sessionlog/src/utils/trailers.ts +0 -187
  347. package/references/sessionlog/src/utils/transcript-parse.ts +0 -177
  348. package/references/sessionlog/src/utils/transcript-timestamp.ts +0 -59
  349. package/references/sessionlog/src/utils/tree-ops.ts +0 -219
  350. package/references/sessionlog/src/utils/tty.ts +0 -72
  351. package/references/sessionlog/src/utils/validation.ts +0 -65
  352. package/references/sessionlog/src/utils/worktree.ts +0 -58
  353. package/references/sessionlog/src/wire-types.ts +0 -59
  354. package/references/sessionlog/templates/setup-env.sh +0 -153
  355. package/references/sessionlog/tsconfig.json +0 -18
  356. package/references/sessionlog/vitest.config.ts +0 -12
  357. package/references/skill-tree/.claude/settings.json +0 -6
  358. package/references/skill-tree/.sudocode/issues.jsonl +0 -19
  359. package/references/skill-tree/.sudocode/specs.jsonl +0 -3
  360. package/references/skill-tree/CLAUDE.md +0 -126
  361. package/references/skill-tree/README.md +0 -372
  362. package/references/skill-tree/docs/GAPS_v1.md +0 -221
  363. package/references/skill-tree/docs/INTEGRATION_PLAN.md +0 -467
  364. package/references/skill-tree/docs/TODOS.md +0 -91
  365. package/references/skill-tree/docs/anthropic_skill_guide.md +0 -1364
  366. package/references/skill-tree/docs/design/federated-skill-trees.md +0 -524
  367. package/references/skill-tree/docs/design/multi-agent-sync.md +0 -759
  368. package/references/skill-tree/docs/scraper/BRAINSTORM.md +0 -583
  369. package/references/skill-tree/docs/scraper/POC_PLAN.md +0 -420
  370. package/references/skill-tree/docs/scraper/README.md +0 -170
  371. package/references/skill-tree/examples/basic-usage.ts +0 -164
  372. package/references/skill-tree/package-lock.json +0 -1852
  373. package/references/skill-tree/package.json +0 -66
  374. package/references/skill-tree/scraper/README.md +0 -123
  375. package/references/skill-tree/scraper/docs/DESIGN.md +0 -683
  376. package/references/skill-tree/scraper/docs/PLAN.md +0 -336
  377. package/references/skill-tree/scraper/drizzle.config.ts +0 -10
  378. package/references/skill-tree/scraper/package-lock.json +0 -6329
  379. package/references/skill-tree/scraper/package.json +0 -68
  380. package/references/skill-tree/scraper/test/fixtures/invalid-skill/missing-description.md +0 -7
  381. package/references/skill-tree/scraper/test/fixtures/invalid-skill/missing-name.md +0 -7
  382. package/references/skill-tree/scraper/test/fixtures/minimal-skill/SKILL.md +0 -27
  383. package/references/skill-tree/scraper/test/fixtures/skill-json/SKILL.json +0 -21
  384. package/references/skill-tree/scraper/test/fixtures/skill-with-meta/SKILL.md +0 -54
  385. package/references/skill-tree/scraper/test/fixtures/skill-with-meta/_meta.json +0 -24
  386. package/references/skill-tree/scraper/test/fixtures/valid-skill/SKILL.md +0 -93
  387. package/references/skill-tree/scraper/test/fixtures/valid-skill/_meta.json +0 -22
  388. package/references/skill-tree/scraper/tsup.config.ts +0 -14
  389. package/references/skill-tree/scraper/vitest.config.ts +0 -17
  390. package/references/skill-tree/scripts/convert-to-vitest.ts +0 -166
  391. package/references/skill-tree/skills/skill-writer/SKILL.md +0 -339
  392. package/references/skill-tree/skills/skill-writer/references/examples.md +0 -326
  393. package/references/skill-tree/skills/skill-writer/references/patterns.md +0 -210
  394. package/references/skill-tree/skills/skill-writer/references/quality-checklist.md +0 -123
  395. package/references/skill-tree/test/run-all.ts +0 -106
  396. package/references/skill-tree/test/utils.ts +0 -128
  397. package/references/skill-tree/vitest.config.ts +0 -16
@@ -1,133 +0,0 @@
1
- /**
2
- * Clean Command
3
- *
4
- * Removes orphaned Sessionlog data: shadow branches, stale session files,
5
- * and temporary files that are no longer referenced.
6
- */
7
-
8
- import * as fs from 'node:fs';
9
- import * as path from 'node:path';
10
- import { SESSIONLOG_TMP_DIR, SHADOW_BRANCH_PREFIX, CHECKPOINTS_BRANCH } from '../types.js';
11
- import { getWorktreeRoot, listBranches, deleteBranch } from '../git-operations.js';
12
- import { createSessionStore } from '../store/session-store.js';
13
-
14
- // ============================================================================
15
- // Types
16
- // ============================================================================
17
-
18
- export interface CleanupItem {
19
- type: 'shadow-branch' | 'session-file' | 'temp-file';
20
- path: string;
21
- reason: string;
22
- }
23
-
24
- export interface CleanResult {
25
- items: CleanupItem[];
26
- deletedCount: number;
27
- errors: string[];
28
- }
29
-
30
- export interface CleanOptions {
31
- cwd?: string;
32
- /** Actually delete (default: preview only) */
33
- force?: boolean;
34
- }
35
-
36
- // ============================================================================
37
- // Implementation
38
- // ============================================================================
39
-
40
- /**
41
- * Find orphaned items
42
- */
43
- export async function findOrphaned(cwd?: string): Promise<CleanupItem[]> {
44
- const items: CleanupItem[] = [];
45
- const sessionStore = createSessionStore(cwd);
46
- const sessions = await sessionStore.list();
47
- const activeBaseCommits = new Set(sessions.map((s) => s.baseCommit).filter(Boolean));
48
-
49
- // 1. Orphaned shadow branches
50
- const branches = await listBranches(`${SHADOW_BRANCH_PREFIX}*`, cwd);
51
- for (const branch of branches) {
52
- if (branch === CHECKPOINTS_BRANCH) continue;
53
-
54
- // Extract base commit from branch name
55
- const hashPart = branch.slice(SHADOW_BRANCH_PREFIX.length);
56
- const baseCommit = hashPart.split('-')[0];
57
-
58
- // A shadow branch is orphaned if no active session references its base commit
59
- if (!activeBaseCommits.has(baseCommit)) {
60
- // Check against full base commits (the hash part is a short hash)
61
- const isReferenced = sessions.some(
62
- (s) => s.baseCommit && s.baseCommit.startsWith(baseCommit),
63
- );
64
-
65
- if (!isReferenced) {
66
- items.push({
67
- type: 'shadow-branch',
68
- path: branch,
69
- reason: 'No active session references this branch',
70
- });
71
- }
72
- }
73
- }
74
-
75
- // 2. Orphaned temp files
76
- try {
77
- const root = await getWorktreeRoot(cwd);
78
- const tmpDir = path.join(root, SESSIONLOG_TMP_DIR);
79
-
80
- const files = await fs.promises.readdir(tmpDir).catch(() => []);
81
- for (const file of files) {
82
- const filePath = path.join(tmpDir, file);
83
- const stat = await fs.promises.stat(filePath);
84
-
85
- // Consider temp files older than 24 hours as orphaned
86
- if (Date.now() - stat.mtimeMs > 24 * 60 * 60 * 1000) {
87
- items.push({
88
- type: 'temp-file',
89
- path: filePath,
90
- reason: 'Temporary file older than 24 hours',
91
- });
92
- }
93
- }
94
- } catch {
95
- // Temp dir may not exist
96
- }
97
-
98
- return items;
99
- }
100
-
101
- /**
102
- * Clean orphaned items
103
- */
104
- export async function clean(options: CleanOptions = {}): Promise<CleanResult> {
105
- const cwd = options.cwd;
106
- const items = await findOrphaned(cwd);
107
- const errors: string[] = [];
108
- let deletedCount = 0;
109
-
110
- if (!options.force) {
111
- return { items, deletedCount: 0, errors: [] };
112
- }
113
-
114
- for (const item of items) {
115
- try {
116
- switch (item.type) {
117
- case 'shadow-branch':
118
- await deleteBranch(item.path, true, cwd);
119
- deletedCount++;
120
- break;
121
- case 'session-file':
122
- case 'temp-file':
123
- await fs.promises.unlink(item.path);
124
- deletedCount++;
125
- break;
126
- }
127
- } catch (e) {
128
- errors.push(`Failed to delete ${item.path}: ${e instanceof Error ? e.message : String(e)}`);
129
- }
130
- }
131
-
132
- return { items, deletedCount, errors };
133
- }
@@ -1,84 +0,0 @@
1
- /**
2
- * Disable Command
3
- *
4
- * Disables Sessionlog in a repository. Can optionally fully uninstall
5
- * hooks and clean up all Sessionlog data.
6
- */
7
-
8
- import { getWorktreeRoot, isGitRepository } from '../git-operations.js';
9
- import { saveProjectSettings, saveLocalSettings } from '../config.js';
10
- import { uninstallGitHooks } from '../hooks/git-hooks.js';
11
- import { detectAgents } from '../agent/registry.js';
12
- import { hasHookSupport } from '../agent/types.js';
13
-
14
- // ============================================================================
15
- // Types
16
- // ============================================================================
17
-
18
- export interface DisableOptions {
19
- cwd?: string;
20
- /** Fully uninstall hooks (not just disable) */
21
- uninstall?: boolean;
22
- /** Disable in local settings instead of project settings */
23
- local?: boolean;
24
- }
25
-
26
- export interface DisableResult {
27
- disabled: boolean;
28
- uninstalled: boolean;
29
- errors: string[];
30
- }
31
-
32
- // ============================================================================
33
- // Implementation
34
- // ============================================================================
35
-
36
- /**
37
- * Disable Sessionlog in a repository
38
- */
39
- export async function disable(options: DisableOptions = {}): Promise<DisableResult> {
40
- const cwd = options.cwd ?? process.cwd();
41
- const errors: string[] = [];
42
-
43
- if (!(await isGitRepository(cwd))) {
44
- return { disabled: false, uninstalled: false, errors: ['Not a git repository'] };
45
- }
46
-
47
- const root = await getWorktreeRoot(cwd);
48
-
49
- // Update settings
50
- if (options.local) {
51
- await saveLocalSettings({ enabled: false }, cwd);
52
- } else {
53
- await saveProjectSettings({ enabled: false }, cwd);
54
- }
55
-
56
- let uninstalled = false;
57
-
58
- if (options.uninstall) {
59
- // Remove git hooks
60
- try {
61
- await uninstallGitHooks(root);
62
- } catch (e) {
63
- errors.push(`Failed to uninstall git hooks: ${e instanceof Error ? e.message : String(e)}`);
64
- }
65
-
66
- // Remove agent hooks
67
- const agents = await detectAgents(cwd);
68
- for (const agent of agents) {
69
- if (hasHookSupport(agent)) {
70
- try {
71
- await agent.uninstallHooks(root);
72
- } catch (e) {
73
- errors.push(
74
- `Failed to uninstall ${agent.name} hooks: ${e instanceof Error ? e.message : String(e)}`,
75
- );
76
- }
77
- }
78
- }
79
-
80
- uninstalled = true;
81
- }
82
-
83
- return { disabled: true, uninstalled, errors };
84
- }
@@ -1,145 +0,0 @@
1
- /**
2
- * Doctor Command
3
- *
4
- * Identifies and fixes stuck sessions. A session is "stuck" if it's
5
- * in ACTIVE phase with no recent interaction, or in ENDED phase with
6
- * uncondensed checkpoint data.
7
- */
8
-
9
- import type { SessionState } from '../types.js';
10
- import { createSessionStore } from '../store/session-store.js';
11
- import { createCheckpointStore } from '../store/checkpoint-store.js';
12
-
13
- // ============================================================================
14
- // Types
15
- // ============================================================================
16
-
17
- export interface StuckSession {
18
- sessionID: string;
19
- reason: 'active-stale' | 'ended-uncondensed';
20
- session: SessionState;
21
- hasShadowBranch: boolean;
22
- canCondense: boolean;
23
- }
24
-
25
- export interface DoctorResult {
26
- stuckSessions: StuckSession[];
27
- fixedCount: number;
28
- discardedCount: number;
29
- errors: string[];
30
- }
31
-
32
- export interface DoctorOptions {
33
- cwd?: string;
34
- /** Auto-fix without prompting */
35
- force?: boolean;
36
- /** Stale threshold in milliseconds (default: 1 hour) */
37
- staleThresholdMs?: number;
38
- }
39
-
40
- // ============================================================================
41
- // Implementation
42
- // ============================================================================
43
-
44
- /**
45
- * Diagnose stuck sessions
46
- */
47
- export async function diagnose(options: DoctorOptions = {}): Promise<StuckSession[]> {
48
- const cwd = options.cwd;
49
- const staleThreshold = options.staleThresholdMs ?? 60 * 60 * 1000; // 1 hour
50
-
51
- const sessionStore = createSessionStore(cwd);
52
- const checkpointStore = createCheckpointStore(cwd);
53
-
54
- const sessions = await sessionStore.list();
55
- const temporaryBranches = await checkpointStore.listTemporary();
56
- const stuck: StuckSession[] = [];
57
-
58
- for (const session of sessions) {
59
- // Check for active stale sessions
60
- if (session.phase === 'active') {
61
- const lastInteraction = session.lastInteractionTime
62
- ? new Date(session.lastInteractionTime).getTime()
63
- : new Date(session.startedAt).getTime();
64
-
65
- if (Date.now() - lastInteraction > staleThreshold) {
66
- const hasShadow = temporaryBranches.some((b) => b.sessionID === session.sessionID);
67
-
68
- stuck.push({
69
- sessionID: session.sessionID,
70
- reason: 'active-stale',
71
- session,
72
- hasShadowBranch: hasShadow,
73
- canCondense: hasShadow && session.filesTouched.length > 0,
74
- });
75
- }
76
- }
77
-
78
- // Check for ended sessions with uncondensed data
79
- if (session.phase === 'ended') {
80
- const hasShadow = temporaryBranches.some((b) => b.sessionID === session.sessionID);
81
-
82
- if (hasShadow) {
83
- stuck.push({
84
- sessionID: session.sessionID,
85
- reason: 'ended-uncondensed',
86
- session,
87
- hasShadowBranch: true,
88
- canCondense: session.filesTouched.length > 0,
89
- });
90
- }
91
- }
92
- }
93
-
94
- return stuck;
95
- }
96
-
97
- /**
98
- * Discard a stuck session (delete state + shadow branch)
99
- */
100
- export async function discardSession(
101
- sessionID: string,
102
- options: { cwd?: string } = {},
103
- ): Promise<void> {
104
- const cwd = options.cwd;
105
- const sessionStore = createSessionStore(cwd);
106
- const checkpointStore = createCheckpointStore(cwd);
107
-
108
- const session = await sessionStore.load(sessionID);
109
- if (!session) return;
110
-
111
- // Delete shadow branch if it exists
112
- if (session.baseCommit) {
113
- const branchName = checkpointStore.getShadowBranchName(session.baseCommit, session.worktreeID);
114
- await checkpointStore.deleteShadowBranch(branchName);
115
- }
116
-
117
- // Delete session state
118
- await sessionStore.delete(sessionID);
119
- }
120
-
121
- /**
122
- * Run doctor with auto-fix
123
- */
124
- export async function doctor(options: DoctorOptions = {}): Promise<DoctorResult> {
125
- const stuck = await diagnose(options);
126
- const errors: string[] = [];
127
- const fixedCount = 0;
128
- let discardedCount = 0;
129
-
130
- if (options.force) {
131
- for (const s of stuck) {
132
- try {
133
- // For now, discard all stuck sessions
134
- await discardSession(s.sessionID, { cwd: options.cwd });
135
- discardedCount++;
136
- } catch (e) {
137
- errors.push(
138
- `Failed to fix session ${s.sessionID}: ${e instanceof Error ? e.message : String(e)}`,
139
- );
140
- }
141
- }
142
- }
143
-
144
- return { stuckSessions: stuck, fixedCount, discardedCount, errors };
145
- }
@@ -1,202 +0,0 @@
1
- /**
2
- * Enable Command
3
- *
4
- * Enables Sessionlog in a repository: creates settings, installs hooks,
5
- * auto-detects agents.
6
- */
7
-
8
- import * as fs from 'node:fs';
9
- import * as path from 'node:path';
10
- import {
11
- type SessionlogSettings,
12
- type AgentName,
13
- SESSION_DIR_NAME,
14
- } from '../types.js';
15
- import {
16
- isGitRepository,
17
- getWorktreeRoot,
18
- getGitDir,
19
- getHead,
20
- initSessionRepo,
21
- resolveSessionRepoPath,
22
- } from '../git-operations.js';
23
- import { resolveSessionlogDir, saveProjectSettings, saveLocalSettings, ensureGitignore } from '../config.js';
24
- import { installGitHooks } from '../hooks/git-hooks.js';
25
- import { detectAgent, getAgent, listAgentNames } from '../agent/registry.js';
26
- import { hasHookSupport } from '../agent/types.js';
27
-
28
- // ============================================================================
29
- // Types
30
- // ============================================================================
31
-
32
- export interface EnableOptions {
33
- /** Working directory */
34
- cwd?: string;
35
-
36
- /** Specific agent to enable (auto-detect if not specified) */
37
- agent?: AgentName;
38
-
39
- /** Force reinstall hooks even if already present */
40
- force?: boolean;
41
-
42
- /** Save to local settings instead of project settings */
43
- local?: boolean;
44
-
45
- /** Write to settings.json even if already present */
46
- project?: boolean;
47
-
48
- /** Disable automatic session log pushing */
49
- skipPushSessions?: boolean;
50
-
51
- /** Opt out of anonymous analytics */
52
- telemetry?: boolean;
53
-
54
- /** Path to a separate repository for session/checkpoint storage */
55
- sessionRepoPath?: string;
56
- }
57
-
58
- export interface EnableResult {
59
- enabled: boolean;
60
- agent: AgentName | null;
61
- agentHooksInstalled: number;
62
- gitHooksInstalled: number;
63
- errors: string[];
64
- }
65
-
66
- // ============================================================================
67
- // Implementation
68
- // ============================================================================
69
-
70
- /**
71
- * Enable Sessionlog in a repository
72
- */
73
- export async function enable(options: EnableOptions = {}): Promise<EnableResult> {
74
- const cwd = options.cwd ?? process.cwd();
75
- const errors: string[] = [];
76
-
77
- // Validate git repository
78
- if (!(await isGitRepository(cwd))) {
79
- return {
80
- enabled: false,
81
- agent: null,
82
- agentHooksInstalled: 0,
83
- gitHooksInstalled: 0,
84
- errors: ['Not a git repository'],
85
- };
86
- }
87
-
88
- // Validate repository has at least one commit
89
- try {
90
- await getHead(cwd);
91
- } catch {
92
- return {
93
- enabled: false,
94
- agent: null,
95
- agentHooksInstalled: 0,
96
- gitHooksInstalled: 0,
97
- errors: ['Repository has no commits'],
98
- };
99
- }
100
-
101
- const root = await getWorktreeRoot(cwd);
102
-
103
- // Detect or resolve agent
104
- const agent = options.agent ? getAgent(options.agent) : await detectAgent(cwd);
105
-
106
- if (!agent) {
107
- errors.push(
108
- `No agent detected. Available agents: ${listAgentNames().join(', ')}. ` +
109
- `Install an agent or specify one with --agent.`,
110
- );
111
- }
112
-
113
- // Create directories
114
- await createDirectories(root, cwd);
115
-
116
- // Save settings
117
- const settings: Partial<SessionlogSettings> = {
118
- enabled: true,
119
- strategy: 'manual-commit',
120
- };
121
-
122
- if (options.skipPushSessions !== undefined) {
123
- settings.skipPushSessions = options.skipPushSessions;
124
- }
125
-
126
- if (options.telemetry !== undefined) {
127
- settings.telemetryEnabled = options.telemetry;
128
- }
129
-
130
- if (options.sessionRepoPath) {
131
- settings.sessionRepoPath = options.sessionRepoPath;
132
- }
133
-
134
- if (options.local) {
135
- await saveLocalSettings(settings, cwd);
136
- } else {
137
- await saveProjectSettings(settings, cwd);
138
- }
139
-
140
- // Initialize separate session repo if configured
141
- if (options.sessionRepoPath) {
142
- try {
143
- const resolved = resolveSessionRepoPath(options.sessionRepoPath, root);
144
- await initSessionRepo(resolved);
145
- } catch (e) {
146
- errors.push(
147
- `Failed to initialize session repo: ${e instanceof Error ? e.message : String(e)}`,
148
- );
149
- }
150
- }
151
-
152
- // Set up .gitignore for local files
153
- await ensureGitignore(cwd);
154
-
155
- // Install git hooks
156
- let gitHooksInstalled = 0;
157
- try {
158
- gitHooksInstalled = await installGitHooks(root);
159
- } catch (e) {
160
- errors.push(`Failed to install git hooks: ${e instanceof Error ? e.message : String(e)}`);
161
- }
162
-
163
- // Install agent hooks
164
- let agentHooksInstalled = 0;
165
- if (agent && hasHookSupport(agent)) {
166
- try {
167
- agentHooksInstalled = await agent.installHooks(root, options.force);
168
- } catch (e) {
169
- errors.push(`Failed to install agent hooks: ${e instanceof Error ? e.message : String(e)}`);
170
- }
171
- }
172
-
173
- return {
174
- enabled: true,
175
- agent: agent?.name ?? null,
176
- agentHooksInstalled,
177
- gitHooksInstalled,
178
- errors,
179
- };
180
- }
181
-
182
- async function createDirectories(root: string, cwd: string): Promise<void> {
183
- const sessionlogDir = resolveSessionlogDir(root);
184
- const dirs = [
185
- sessionlogDir,
186
- path.join(sessionlogDir, 'metadata'),
187
- path.join(sessionlogDir, 'tmp'),
188
- ];
189
-
190
- // Also create .git/sessionlog-sessions/
191
- try {
192
- const gitDir = await getGitDir(cwd);
193
- const sessionsDir = path.resolve(root, gitDir, SESSION_DIR_NAME);
194
- dirs.push(sessionsDir);
195
- } catch {
196
- // Ignore if git dir resolution fails
197
- }
198
-
199
- for (const dir of dirs) {
200
- await fs.promises.mkdir(dir, { recursive: true });
201
- }
202
- }