agentic-flow 1.9.0 → 1.9.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1223) hide show
  1. package/.claude/agents/analysis/code-analyzer.md +1 -1
  2. package/.claude/agents/core/coder.md +2 -57
  3. package/.claude/agents/core/planner.md +1 -53
  4. package/.claude/agents/core/researcher.md +6 -60
  5. package/.claude/agents/core/reviewer.md +1 -55
  6. package/.claude/agents/core/tester.md +1 -54
  7. package/.claude/agents/goal/goal-planner.md +25 -120
  8. package/.claude/agents/swarm/hierarchical-coordinator.md +4 -75
  9. package/.claude/agents/templates/coordinator-swarm-init.md +4 -19
  10. package/.claude/commands/hooks/overview.md +10 -84
  11. package/.claude/settings.json +20 -21
  12. package/.claude/settings.local.json +7 -3
  13. package/CHANGELOG.md +976 -83
  14. package/README.md +1 -15
  15. package/dist/agentdb/tests/frontier-features.test.js +665 -0
  16. package/{agentic-flow/dist → dist}/cli/config-wizard.js +13 -4
  17. package/dist/cli/federation-cli.d.ts +53 -0
  18. package/{agentic-flow/dist → dist}/cli-proxy.js +22 -15
  19. package/dist/hooks/parallel-validation.js +166 -0
  20. package/dist/hooks/swarm-learning-optimizer.js +350 -0
  21. package/{agentic-flow/dist → dist}/proxy/provider-instructions.js +98 -0
  22. package/dist/reasoningbank/config/reasoningbank-types.ts +57 -0
  23. package/{agentic-flow/dist → dist}/utils/cli.js +29 -0
  24. package/docs/.claude-flow/metrics/performance.json +3 -3
  25. package/docs/.claude-flow/metrics/task-metrics.json +3 -3
  26. package/docs/guides/MCP-TOOLS.md +850 -1050
  27. package/package.json +169 -44
  28. package/validation/docker/Dockerfile.reasoningbank-local +24 -0
  29. package/validation/docker/Dockerfile.reasoningbank-test +21 -0
  30. package/validation/docker/README.md +234 -0
  31. package/validation/docker/docker-compose.yml +29 -0
  32. package/validation/docker/test-reasoningbank-npx.mjs +442 -0
  33. package/validation/docker-e2e-validation.sh +212 -0
  34. package/validation/docker-quic-test.sh +42 -0
  35. package/validation/docker-quic-validation.sh +60 -0
  36. package/validation/quic-deep-validation.ts +304 -0
  37. package/validation/test-quic-integration.ts +243 -0
  38. package/validation/test-quic-wasm.ts +94 -0
  39. package/validation/test-regression.mjs +246 -0
  40. package/validation/test-wasm-e2e.ts +354 -0
  41. package/validation/test-wasm-integration.ts +99 -0
  42. package/wasm/quic/agentic_flow_quic.d.ts +37 -0
  43. package/wasm/quic/agentic_flow_quic_bg.wasm.d.ts +19 -0
  44. package/wasm/reasoningbank/reasoningbank_wasm.d.ts +41 -0
  45. package/wasm/reasoningbank/reasoningbank_wasm_bg.wasm.d.ts +20 -0
  46. package/.claude/agents/goal/code-goal-planner.md +0 -446
  47. package/.claude/agents/hive-mind/collective-intelligence-coordinator.md +0 -130
  48. package/.claude/agents/hive-mind/queen-coordinator.md +0 -203
  49. package/.claude/agents/hive-mind/scout-explorer.md +0 -242
  50. package/.claude/agents/hive-mind/swarm-memory-manager.md +0 -193
  51. package/.claude/agents/hive-mind/worker-specialist.md +0 -217
  52. package/.claude/agents/neural/safla-neural.md +0 -74
  53. package/.claude/agents/reasoning/README.md +0 -452
  54. package/.claude/agents/reasoning/adaptive-learner.md +0 -415
  55. package/.claude/agents/reasoning/context-synthesizer.md +0 -532
  56. package/.claude/agents/reasoning/experience-curator.md +0 -562
  57. package/.claude/agents/reasoning/goal-planner.md +0 -73
  58. package/.claude/agents/reasoning/memory-optimizer.md +0 -579
  59. package/.claude/agents/reasoning/pattern-matcher.md +0 -591
  60. package/.claude/agents/reasoning/reasoning-optimized.md +0 -587
  61. package/.claude/commands/coordination/README.md +0 -9
  62. package/.claude/commands/coordination/agent-spawn.md +0 -25
  63. package/.claude/commands/coordination/init.md +0 -44
  64. package/.claude/commands/coordination/orchestrate.md +0 -43
  65. package/.claude/commands/coordination/spawn.md +0 -45
  66. package/.claude/commands/coordination/swarm-init.md +0 -85
  67. package/.claude/commands/coordination/task-orchestrate.md +0 -25
  68. package/.claude/commands/memory/README.md +0 -9
  69. package/.claude/commands/memory/memory-persist.md +0 -25
  70. package/.claude/commands/memory/memory-search.md +0 -25
  71. package/.claude/commands/memory/memory-usage.md +0 -25
  72. package/.claude/commands/memory/neural.md +0 -47
  73. package/.claude/commands/memory/usage.md +0 -46
  74. package/.claude/skills/agentdb-advanced/SKILL.md +0 -550
  75. package/.claude/skills/agentdb-learning/SKILL.md +0 -545
  76. package/.claude/skills/agentdb-memory-patterns/SKILL.md +0 -339
  77. package/.claude/skills/agentdb-optimization/SKILL.md +0 -509
  78. package/.claude/skills/agentdb-vector-search/SKILL.md +0 -339
  79. package/.claude/skills/flow-nexus-neural/SKILL.md +0 -738
  80. package/.claude/skills/flow-nexus-platform/SKILL.md +0 -1157
  81. package/.claude/skills/flow-nexus-swarm/SKILL.md +0 -610
  82. package/.claude/skills/github-code-review/SKILL.md +0 -1140
  83. package/.claude/skills/github-multi-repo/SKILL.md +0 -874
  84. package/.claude/skills/github-project-management/SKILL.md +0 -1277
  85. package/.claude/skills/github-release-management/SKILL.md +0 -1081
  86. package/.claude/skills/github-workflow-automation/SKILL.md +0 -1065
  87. package/.claude/skills/hive-mind-advanced/SKILL.md +0 -712
  88. package/.claude/skills/hooks-automation/SKILL.md +0 -1201
  89. package/.claude/skills/pair-programming/SKILL.md +0 -1202
  90. package/.claude/skills/performance-analysis/SKILL.md +0 -563
  91. package/.claude/skills/reasoningbank-agentdb/SKILL.md +0 -446
  92. package/.claude/skills/reasoningbank-intelligence/SKILL.md +0 -201
  93. package/.claude/skills/skill-builder/SKILL.md +0 -910
  94. package/.claude/skills/sparc-methodology/SKILL.md +0 -1115
  95. package/.claude/skills/stream-chain/SKILL.md +0 -563
  96. package/.claude/skills/swarm-advanced/SKILL.md +0 -973
  97. package/.claude/skills/swarm-orchestration/SKILL.md +0 -179
  98. package/.claude/skills/verification-quality/SKILL.md +0 -649
  99. package/.claude/statusline-command.sh +0 -176
  100. package/.claude-flow/metrics/performance.json +0 -87
  101. package/.claude-flow/metrics/system-metrics.json +0 -2138
  102. package/.claude-flow/metrics/task-metrics.json +0 -10
  103. package/.hive-mind/README.md +0 -43
  104. package/.hive-mind/config/queens.json +0 -59
  105. package/.hive-mind/config/workers.json +0 -72
  106. package/.hive-mind/config.json +0 -111
  107. package/.hive-mind/hive.db +0 -0
  108. package/.mcp.json +0 -39
  109. package/.swarm/memory.db +0 -0
  110. package/.swarm/memory.db-shm +0 -0
  111. package/.swarm/memory.db-wal +0 -0
  112. package/CLAUDE.md +0 -354
  113. package/agentdb.db +0 -0
  114. package/agentic-flow/.agentdb-instructions.md +0 -66
  115. package/agentic-flow/.claude/agents/analysis/code-analyzer.md +0 -209
  116. package/agentic-flow/.claude/agents/analysis/code-review/analyze-code-quality.md +0 -180
  117. package/agentic-flow/.claude/agents/architecture/system-design/arch-system-design.md +0 -156
  118. package/agentic-flow/.claude/agents/base-template-generator.md +0 -42
  119. package/agentic-flow/.claude/agents/consensus/byzantine-coordinator.md +0 -63
  120. package/agentic-flow/.claude/agents/consensus/crdt-synchronizer.md +0 -997
  121. package/agentic-flow/.claude/agents/consensus/gossip-coordinator.md +0 -63
  122. package/agentic-flow/.claude/agents/consensus/performance-benchmarker.md +0 -851
  123. package/agentic-flow/.claude/agents/consensus/quorum-manager.md +0 -823
  124. package/agentic-flow/.claude/agents/consensus/raft-manager.md +0 -63
  125. package/agentic-flow/.claude/agents/consensus/security-manager.md +0 -622
  126. package/agentic-flow/.claude/agents/core/coder.md +0 -211
  127. package/agentic-flow/.claude/agents/core/planner.md +0 -116
  128. package/agentic-flow/.claude/agents/core/researcher.md +0 -136
  129. package/agentic-flow/.claude/agents/core/reviewer.md +0 -272
  130. package/agentic-flow/.claude/agents/core/tester.md +0 -266
  131. package/agentic-flow/.claude/agents/data/ml/data-ml-model.md +0 -193
  132. package/agentic-flow/.claude/agents/development/backend/dev-backend-api.md +0 -142
  133. package/agentic-flow/.claude/agents/devops/ci-cd/ops-cicd-github.md +0 -164
  134. package/agentic-flow/.claude/agents/documentation/api-docs/docs-api-openapi.md +0 -174
  135. package/agentic-flow/.claude/agents/flow-nexus/app-store.md +0 -88
  136. package/agentic-flow/.claude/agents/flow-nexus/authentication.md +0 -69
  137. package/agentic-flow/.claude/agents/flow-nexus/challenges.md +0 -81
  138. package/agentic-flow/.claude/agents/flow-nexus/neural-network.md +0 -88
  139. package/agentic-flow/.claude/agents/flow-nexus/payments.md +0 -83
  140. package/agentic-flow/.claude/agents/flow-nexus/sandbox.md +0 -76
  141. package/agentic-flow/.claude/agents/flow-nexus/swarm.md +0 -76
  142. package/agentic-flow/.claude/agents/flow-nexus/user-tools.md +0 -96
  143. package/agentic-flow/.claude/agents/flow-nexus/workflow.md +0 -84
  144. package/agentic-flow/.claude/agents/github/code-review-swarm.md +0 -538
  145. package/agentic-flow/.claude/agents/github/github-modes.md +0 -173
  146. package/agentic-flow/.claude/agents/github/issue-tracker.md +0 -319
  147. package/agentic-flow/.claude/agents/github/multi-repo-swarm.md +0 -553
  148. package/agentic-flow/.claude/agents/github/pr-manager.md +0 -191
  149. package/agentic-flow/.claude/agents/github/project-board-sync.md +0 -509
  150. package/agentic-flow/.claude/agents/github/release-manager.md +0 -367
  151. package/agentic-flow/.claude/agents/github/release-swarm.md +0 -583
  152. package/agentic-flow/.claude/agents/github/repo-architect.md +0 -398
  153. package/agentic-flow/.claude/agents/github/swarm-issue.md +0 -573
  154. package/agentic-flow/.claude/agents/github/swarm-pr.md +0 -428
  155. package/agentic-flow/.claude/agents/github/sync-coordinator.md +0 -452
  156. package/agentic-flow/.claude/agents/github/workflow-automation.md +0 -635
  157. package/agentic-flow/.claude/agents/goal/agent.md +0 -816
  158. package/agentic-flow/.claude/agents/goal/goal-planner.md +0 -73
  159. package/agentic-flow/.claude/agents/optimization/benchmark-suite.md +0 -665
  160. package/agentic-flow/.claude/agents/optimization/load-balancer.md +0 -431
  161. package/agentic-flow/.claude/agents/optimization/performance-monitor.md +0 -672
  162. package/agentic-flow/.claude/agents/optimization/resource-allocator.md +0 -674
  163. package/agentic-flow/.claude/agents/optimization/topology-optimizer.md +0 -808
  164. package/agentic-flow/.claude/agents/sparc/architecture.md +0 -472
  165. package/agentic-flow/.claude/agents/sparc/pseudocode.md +0 -318
  166. package/agentic-flow/.claude/agents/sparc/refinement.md +0 -525
  167. package/agentic-flow/.claude/agents/sparc/specification.md +0 -276
  168. package/agentic-flow/.claude/agents/specialized/mobile/spec-mobile-react-native.md +0 -226
  169. package/agentic-flow/.claude/agents/swarm/adaptive-coordinator.md +0 -396
  170. package/agentic-flow/.claude/agents/swarm/hierarchical-coordinator.md +0 -256
  171. package/agentic-flow/.claude/agents/swarm/mesh-coordinator.md +0 -392
  172. package/agentic-flow/.claude/agents/templates/automation-smart-agent.md +0 -205
  173. package/agentic-flow/.claude/agents/templates/coordinator-swarm-init.md +0 -90
  174. package/agentic-flow/.claude/agents/templates/github-pr-manager.md +0 -177
  175. package/agentic-flow/.claude/agents/templates/implementer-sparc-coder.md +0 -259
  176. package/agentic-flow/.claude/agents/templates/memory-coordinator.md +0 -187
  177. package/agentic-flow/.claude/agents/templates/migration-plan.md +0 -746
  178. package/agentic-flow/.claude/agents/templates/orchestrator-task.md +0 -139
  179. package/agentic-flow/.claude/agents/templates/performance-analyzer.md +0 -199
  180. package/agentic-flow/.claude/agents/templates/sparc-coordinator.md +0 -183
  181. package/agentic-flow/.claude/agents/testing/unit/tdd-london-swarm.md +0 -244
  182. package/agentic-flow/.claude/agents/testing/validation/production-validator.md +0 -395
  183. package/agentic-flow/.claude/commands/agents/README.md +0 -10
  184. package/agentic-flow/.claude/commands/agents/agent-capabilities.md +0 -21
  185. package/agentic-flow/.claude/commands/agents/agent-coordination.md +0 -28
  186. package/agentic-flow/.claude/commands/agents/agent-spawning.md +0 -28
  187. package/agentic-flow/.claude/commands/agents/agent-types.md +0 -26
  188. package/agentic-flow/.claude/commands/analysis/COMMAND_COMPLIANCE_REPORT.md +0 -54
  189. package/agentic-flow/.claude/commands/analysis/README.md +0 -9
  190. package/agentic-flow/.claude/commands/analysis/bottleneck-detect.md +0 -162
  191. package/agentic-flow/.claude/commands/analysis/performance-bottlenecks.md +0 -59
  192. package/agentic-flow/.claude/commands/analysis/performance-report.md +0 -25
  193. package/agentic-flow/.claude/commands/analysis/token-efficiency.md +0 -45
  194. package/agentic-flow/.claude/commands/analysis/token-usage.md +0 -25
  195. package/agentic-flow/.claude/commands/automation/README.md +0 -9
  196. package/agentic-flow/.claude/commands/automation/auto-agent.md +0 -122
  197. package/agentic-flow/.claude/commands/automation/self-healing.md +0 -106
  198. package/agentic-flow/.claude/commands/automation/session-memory.md +0 -90
  199. package/agentic-flow/.claude/commands/automation/smart-agents.md +0 -73
  200. package/agentic-flow/.claude/commands/automation/smart-spawn.md +0 -25
  201. package/agentic-flow/.claude/commands/automation/workflow-select.md +0 -25
  202. package/agentic-flow/.claude/commands/flow-nexus/app-store.md +0 -124
  203. package/agentic-flow/.claude/commands/flow-nexus/challenges.md +0 -120
  204. package/agentic-flow/.claude/commands/flow-nexus/login-registration.md +0 -65
  205. package/agentic-flow/.claude/commands/flow-nexus/neural-network.md +0 -134
  206. package/agentic-flow/.claude/commands/flow-nexus/payments.md +0 -116
  207. package/agentic-flow/.claude/commands/flow-nexus/sandbox.md +0 -83
  208. package/agentic-flow/.claude/commands/flow-nexus/swarm.md +0 -87
  209. package/agentic-flow/.claude/commands/flow-nexus/user-tools.md +0 -152
  210. package/agentic-flow/.claude/commands/flow-nexus/workflow.md +0 -115
  211. package/agentic-flow/.claude/commands/github/README.md +0 -11
  212. package/agentic-flow/.claude/commands/github/code-review-swarm.md +0 -514
  213. package/agentic-flow/.claude/commands/github/code-review.md +0 -25
  214. package/agentic-flow/.claude/commands/github/github-modes.md +0 -147
  215. package/agentic-flow/.claude/commands/github/github-swarm.md +0 -121
  216. package/agentic-flow/.claude/commands/github/issue-tracker.md +0 -292
  217. package/agentic-flow/.claude/commands/github/issue-triage.md +0 -25
  218. package/agentic-flow/.claude/commands/github/multi-repo-swarm.md +0 -519
  219. package/agentic-flow/.claude/commands/github/pr-enhance.md +0 -26
  220. package/agentic-flow/.claude/commands/github/pr-manager.md +0 -170
  221. package/agentic-flow/.claude/commands/github/project-board-sync.md +0 -471
  222. package/agentic-flow/.claude/commands/github/release-manager.md +0 -338
  223. package/agentic-flow/.claude/commands/github/release-swarm.md +0 -544
  224. package/agentic-flow/.claude/commands/github/repo-analyze.md +0 -25
  225. package/agentic-flow/.claude/commands/github/repo-architect.md +0 -367
  226. package/agentic-flow/.claude/commands/github/swarm-issue.md +0 -482
  227. package/agentic-flow/.claude/commands/github/swarm-pr.md +0 -285
  228. package/agentic-flow/.claude/commands/github/sync-coordinator.md +0 -301
  229. package/agentic-flow/.claude/commands/github/workflow-automation.md +0 -442
  230. package/agentic-flow/.claude/commands/hive-mind/README.md +0 -17
  231. package/agentic-flow/.claude/commands/hive-mind/hive-mind-consensus.md +0 -8
  232. package/agentic-flow/.claude/commands/hive-mind/hive-mind-init.md +0 -18
  233. package/agentic-flow/.claude/commands/hive-mind/hive-mind-memory.md +0 -8
  234. package/agentic-flow/.claude/commands/hive-mind/hive-mind-metrics.md +0 -8
  235. package/agentic-flow/.claude/commands/hive-mind/hive-mind-resume.md +0 -8
  236. package/agentic-flow/.claude/commands/hive-mind/hive-mind-sessions.md +0 -8
  237. package/agentic-flow/.claude/commands/hive-mind/hive-mind-spawn.md +0 -21
  238. package/agentic-flow/.claude/commands/hive-mind/hive-mind-status.md +0 -8
  239. package/agentic-flow/.claude/commands/hive-mind/hive-mind-stop.md +0 -8
  240. package/agentic-flow/.claude/commands/hive-mind/hive-mind-wizard.md +0 -8
  241. package/agentic-flow/.claude/commands/hive-mind/hive-mind.md +0 -27
  242. package/agentic-flow/.claude/commands/hooks/README.md +0 -11
  243. package/agentic-flow/.claude/commands/hooks/overview.md +0 -58
  244. package/agentic-flow/.claude/commands/hooks/post-edit.md +0 -117
  245. package/agentic-flow/.claude/commands/hooks/post-task.md +0 -112
  246. package/agentic-flow/.claude/commands/hooks/pre-edit.md +0 -113
  247. package/agentic-flow/.claude/commands/hooks/pre-task.md +0 -111
  248. package/agentic-flow/.claude/commands/hooks/session-end.md +0 -118
  249. package/agentic-flow/.claude/commands/hooks/setup.md +0 -103
  250. package/agentic-flow/.claude/commands/monitoring/README.md +0 -9
  251. package/agentic-flow/.claude/commands/monitoring/agent-metrics.md +0 -25
  252. package/agentic-flow/.claude/commands/monitoring/agents.md +0 -44
  253. package/agentic-flow/.claude/commands/monitoring/real-time-view.md +0 -25
  254. package/agentic-flow/.claude/commands/monitoring/status.md +0 -46
  255. package/agentic-flow/.claude/commands/monitoring/swarm-monitor.md +0 -25
  256. package/agentic-flow/.claude/commands/optimization/README.md +0 -9
  257. package/agentic-flow/.claude/commands/optimization/auto-topology.md +0 -62
  258. package/agentic-flow/.claude/commands/optimization/cache-manage.md +0 -25
  259. package/agentic-flow/.claude/commands/optimization/parallel-execute.md +0 -25
  260. package/agentic-flow/.claude/commands/optimization/parallel-execution.md +0 -50
  261. package/agentic-flow/.claude/commands/optimization/topology-optimize.md +0 -25
  262. package/agentic-flow/.claude/commands/pair/commands.md +0 -546
  263. package/agentic-flow/.claude/commands/pair/config.md +0 -510
  264. package/agentic-flow/.claude/commands/pair/examples.md +0 -512
  265. package/agentic-flow/.claude/commands/pair/modes.md +0 -348
  266. package/agentic-flow/.claude/commands/pair/session.md +0 -407
  267. package/agentic-flow/.claude/commands/pair/start.md +0 -209
  268. package/agentic-flow/.claude/commands/sparc/analyzer.md +0 -52
  269. package/agentic-flow/.claude/commands/sparc/architect.md +0 -53
  270. package/agentic-flow/.claude/commands/sparc/batch-executor.md +0 -54
  271. package/agentic-flow/.claude/commands/sparc/coder.md +0 -54
  272. package/agentic-flow/.claude/commands/sparc/debugger.md +0 -54
  273. package/agentic-flow/.claude/commands/sparc/designer.md +0 -53
  274. package/agentic-flow/.claude/commands/sparc/documenter.md +0 -54
  275. package/agentic-flow/.claude/commands/sparc/innovator.md +0 -54
  276. package/agentic-flow/.claude/commands/sparc/memory-manager.md +0 -54
  277. package/agentic-flow/.claude/commands/sparc/optimizer.md +0 -54
  278. package/agentic-flow/.claude/commands/sparc/orchestrator.md +0 -132
  279. package/agentic-flow/.claude/commands/sparc/researcher.md +0 -54
  280. package/agentic-flow/.claude/commands/sparc/reviewer.md +0 -54
  281. package/agentic-flow/.claude/commands/sparc/sparc-modes.md +0 -174
  282. package/agentic-flow/.claude/commands/sparc/swarm-coordinator.md +0 -54
  283. package/agentic-flow/.claude/commands/sparc/tdd.md +0 -54
  284. package/agentic-flow/.claude/commands/sparc/tester.md +0 -54
  285. package/agentic-flow/.claude/commands/sparc/workflow-manager.md +0 -54
  286. package/agentic-flow/.claude/commands/stream-chain/pipeline.md +0 -121
  287. package/agentic-flow/.claude/commands/stream-chain/run.md +0 -70
  288. package/agentic-flow/.claude/commands/swarm/README.md +0 -15
  289. package/agentic-flow/.claude/commands/swarm/analysis.md +0 -95
  290. package/agentic-flow/.claude/commands/swarm/development.md +0 -96
  291. package/agentic-flow/.claude/commands/swarm/examples.md +0 -168
  292. package/agentic-flow/.claude/commands/swarm/maintenance.md +0 -102
  293. package/agentic-flow/.claude/commands/swarm/optimization.md +0 -117
  294. package/agentic-flow/.claude/commands/swarm/research.md +0 -136
  295. package/agentic-flow/.claude/commands/swarm/swarm-analysis.md +0 -8
  296. package/agentic-flow/.claude/commands/swarm/swarm-background.md +0 -8
  297. package/agentic-flow/.claude/commands/swarm/swarm-init.md +0 -19
  298. package/agentic-flow/.claude/commands/swarm/swarm-modes.md +0 -8
  299. package/agentic-flow/.claude/commands/swarm/swarm-monitor.md +0 -8
  300. package/agentic-flow/.claude/commands/swarm/swarm-spawn.md +0 -19
  301. package/agentic-flow/.claude/commands/swarm/swarm-status.md +0 -8
  302. package/agentic-flow/.claude/commands/swarm/swarm-strategies.md +0 -8
  303. package/agentic-flow/.claude/commands/swarm/swarm.md +0 -27
  304. package/agentic-flow/.claude/commands/swarm/testing.md +0 -131
  305. package/agentic-flow/.claude/commands/training/README.md +0 -9
  306. package/agentic-flow/.claude/commands/training/model-update.md +0 -25
  307. package/agentic-flow/.claude/commands/training/neural-patterns.md +0 -74
  308. package/agentic-flow/.claude/commands/training/neural-train.md +0 -25
  309. package/agentic-flow/.claude/commands/training/pattern-learn.md +0 -25
  310. package/agentic-flow/.claude/commands/training/specialization.md +0 -63
  311. package/agentic-flow/.claude/commands/truth/start.md +0 -143
  312. package/agentic-flow/.claude/commands/verify/check.md +0 -50
  313. package/agentic-flow/.claude/commands/verify/start.md +0 -128
  314. package/agentic-flow/.claude/commands/workflows/README.md +0 -9
  315. package/agentic-flow/.claude/commands/workflows/development.md +0 -78
  316. package/agentic-flow/.claude/commands/workflows/research.md +0 -63
  317. package/agentic-flow/.claude/commands/workflows/workflow-create.md +0 -25
  318. package/agentic-flow/.claude/commands/workflows/workflow-execute.md +0 -25
  319. package/agentic-flow/.claude/commands/workflows/workflow-export.md +0 -25
  320. package/agentic-flow/.claude/helpers/checkpoint-manager.sh +0 -251
  321. package/agentic-flow/.claude/helpers/github-safe.js +0 -106
  322. package/agentic-flow/.claude/helpers/github-setup.sh +0 -28
  323. package/agentic-flow/.claude/helpers/quick-start.sh +0 -19
  324. package/agentic-flow/.claude/helpers/setup-mcp.sh +0 -18
  325. package/agentic-flow/.claude/helpers/standard-checkpoint-hooks.sh +0 -179
  326. package/agentic-flow/.claude/settings.json +0 -114
  327. package/agentic-flow/.claude/settings.local.json +0 -14
  328. package/agentic-flow/.claude/skills/skill-builder/.claude-flow/metrics/agent-metrics.json +0 -1
  329. package/agentic-flow/AGENT-BOOSTER-STATUS.md +0 -292
  330. package/agentic-flow/CHANGELOG-v1.3.0.md +0 -120
  331. package/agentic-flow/CHANGELOG.md +0 -1023
  332. package/agentic-flow/COMPLETION_REPORT_v1.7.1.md +0 -335
  333. package/agentic-flow/DOCKER-VERIFICATION.md +0 -207
  334. package/agentic-flow/IMPLEMENTATION_SUMMARY_v1.7.1.md +0 -241
  335. package/agentic-flow/NPX_AGENTDB_SETUP.md +0 -175
  336. package/agentic-flow/PUBLISH_GUIDE.md +0 -438
  337. package/agentic-flow/PUBLISH_SUMMARY_v1.7.1.md +0 -198
  338. package/agentic-flow/Python/AddTwoNumbers.py +0 -2
  339. package/agentic-flow/README.md +0 -577
  340. package/agentic-flow/RELEASE_NOTES_v1.7.0.md +0 -297
  341. package/agentic-flow/RELEASE_v1.7.1.md +0 -327
  342. package/agentic-flow/SUPABASE-INTEGRATION-COMPLETE.md +0 -357
  343. package/agentic-flow/TESTING_QUICK_START.md +0 -223
  344. package/agentic-flow/TOOL-EMULATION-INTEGRATION-ISSUE.md +0 -669
  345. package/agentic-flow/VALIDATION_v1.7.1.md +0 -234
  346. package/agentic-flow/add_two_numbers.py +0 -2
  347. package/agentic-flow/agentdb.db +0 -0
  348. package/agentic-flow/agentic-flow/.claude-flow/metrics/agent-metrics.json +0 -1
  349. package/agentic-flow/agentic-flow/.claude-flow/metrics/performance.json +0 -87
  350. package/agentic-flow/agentic-flow/.claude-flow/metrics/task-metrics.json +0 -10
  351. package/agentic-flow/app/app.py +0 -0
  352. package/agentic-flow/config/.mcp.json +0 -22
  353. package/agentic-flow/config/router.config.example.json +0 -224
  354. package/agentic-flow/config/router.config.json +0 -224
  355. package/agentic-flow/deployment/.claude-settings.json +0 -14
  356. package/agentic-flow/docker/claude-agent-sdk/docker/claude-agent-sdk/FASTMCP_SUMMARY.md +0 -369
  357. package/agentic-flow/docker/claude-agent-sdk/docker/claude-agent-sdk/docs/ARCHITECTURE.md +0 -385
  358. package/agentic-flow/docker/claude-agent-sdk/docker/claude-agent-sdk/docs/fastmcp-implementation.md +0 -351
  359. package/agentic-flow/docker/claude-agent-sdk/docker/claude-agent-sdk/docs/fastmcp-quick-start.md +0 -358
  360. package/agentic-flow/docker/claude-agent-sdk/docker/claude-agent-sdk/src/mcp/fastmcp/README.md +0 -340
  361. package/agentic-flow/docker/fastmcp-test.Dockerfile +0 -24
  362. package/agentic-flow/docker/federation-test/.claude-flow/metrics/agent-metrics.json +0 -1
  363. package/agentic-flow/docker/federation-test/.claude-flow/metrics/performance.json +0 -87
  364. package/agentic-flow/docker/federation-test/.claude-flow/metrics/task-metrics.json +0 -10
  365. package/agentic-flow/docker/federation-test/README.md +0 -314
  366. package/agentic-flow/docker/federation-test/run-test.sh +0 -65
  367. package/agentic-flow/docker/federation-test/standalone-agent.js +0 -180
  368. package/agentic-flow/docker/federation-test/standalone-hub.js +0 -85
  369. package/agentic-flow/docker/federation-test/test-published-hub.js +0 -66
  370. package/agentic-flow/docker/test-instance/.claude-flow/metrics/agent-metrics.json +0 -1
  371. package/agentic-flow/docker/test-instance/.claude-flow/metrics/performance.json +0 -87
  372. package/agentic-flow/docker/test-instance/.claude-flow/metrics/task-metrics.json +0 -10
  373. package/agentic-flow/docker/test-instance/.env.example +0 -51
  374. package/agentic-flow/docker/test-instance/COMPREHENSIVE_TEST_RESULTS.md +0 -766
  375. package/agentic-flow/docker/test-instance/DOCKER_VALIDATION_SUMMARY.md +0 -417
  376. package/agentic-flow/docker/test-instance/FIX_VALIDATION_REPORT.md +0 -619
  377. package/agentic-flow/docker/test-instance/INDEX.md +0 -282
  378. package/agentic-flow/docker/test-instance/QUICK_START.md +0 -217
  379. package/agentic-flow/docker/test-instance/README.md +0 -266
  380. package/agentic-flow/docker/test-instance/VALIDATION_REPORT.md +0 -424
  381. package/agentic-flow/docker/test-instance/test-model-config.md +0 -69
  382. package/agentic-flow/docker/test-instance/test-runner.sh +0 -91
  383. package/agentic-flow/docker/test-v1.1.10.dockerfile +0 -12
  384. package/agentic-flow/docker/test-validation.sh +0 -37
  385. package/agentic-flow/docker-test.sh +0 -77
  386. package/agentic-flow/docs/.claude-flow/metrics/agent-metrics.json +0 -1
  387. package/agentic-flow/docs/.claude-flow/metrics/performance.json +0 -87
  388. package/agentic-flow/docs/.claude-flow/metrics/task-metrics.json +0 -10
  389. package/agentic-flow/docs/CLAUDE.md +0 -352
  390. package/agentic-flow/docs/INDEX.md +0 -279
  391. package/agentic-flow/docs/LICENSE +0 -21
  392. package/agentic-flow/docs/architecture/EXECUTIVE_SUMMARY.md +0 -310
  393. package/agentic-flow/docs/architecture/IMPROVEMENT_PLAN.md +0 -11
  394. package/agentic-flow/docs/architecture/INTEGRATION-STATUS.md +0 -290
  395. package/agentic-flow/docs/architecture/MULTI_MODEL_ROUTER_PLAN.md +0 -620
  396. package/agentic-flow/docs/architecture/PACKAGE_STRUCTURE.md +0 -199
  397. package/agentic-flow/docs/architecture/QUIC-IMPLEMENTATION-SUMMARY.md +0 -490
  398. package/agentic-flow/docs/architecture/QUIC-SWARM-INTEGRATION.md +0 -593
  399. package/agentic-flow/docs/architecture/QUICK_WINS.md +0 -333
  400. package/agentic-flow/docs/architecture/README.md +0 -15
  401. package/agentic-flow/docs/architecture/RESEARCH_SUMMARY.md +0 -652
  402. package/agentic-flow/docs/guides/.claude-flow/metrics/agent-metrics.json +0 -1
  403. package/agentic-flow/docs/guides/.claude-flow/metrics/performance.json +0 -9
  404. package/agentic-flow/docs/guides/.claude-flow/metrics/task-metrics.json +0 -10
  405. package/agentic-flow/docs/guides/ADDING-MCP-SERVERS-CLI.md +0 -515
  406. package/agentic-flow/docs/guides/ADDING-MCP-SERVERS.md +0 -642
  407. package/agentic-flow/docs/guides/AGENT-BOOSTER.md +0 -435
  408. package/agentic-flow/docs/guides/ALTERNATIVE_LLM_MODELS.md +0 -524
  409. package/agentic-flow/docs/guides/CLAUDE-CODE-INTEGRATION.md +0 -403
  410. package/agentic-flow/docs/guides/DEPLOYMENT.md +0 -906
  411. package/agentic-flow/docs/guides/DOCKER_AGENT_USAGE.md +0 -352
  412. package/agentic-flow/docs/guides/IMPLEMENTATION_EXAMPLES.md +0 -960
  413. package/agentic-flow/docs/guides/MCP-TOOLS.md +0 -1166
  414. package/agentic-flow/docs/guides/MODEL-ID-MAPPING.md +0 -193
  415. package/agentic-flow/docs/guides/MULTI-MODEL-ROUTER.md +0 -702
  416. package/agentic-flow/docs/guides/NPM-PUBLISH.md +0 -218
  417. package/agentic-flow/docs/guides/ONNX-PROXY-IMPLEMENTATION.md +0 -254
  418. package/agentic-flow/docs/guides/ONNX_CLI_USAGE.md +0 -344
  419. package/agentic-flow/docs/guides/ONNX_OPTIMIZATION_GUIDE.md +0 -665
  420. package/agentic-flow/docs/guides/OPENROUTER_DEPLOYMENT.md +0 -495
  421. package/agentic-flow/docs/guides/PROXY-ARCHITECTURE-AND-EXTENSION.md +0 -708
  422. package/agentic-flow/docs/guides/QUIC-SWARM-QUICKSTART.md +0 -543
  423. package/agentic-flow/docs/guides/README.md +0 -17
  424. package/agentic-flow/docs/guides/REASONINGBANK.md +0 -721
  425. package/agentic-flow/docs/guides/STANDALONE_PROXY_GUIDE.md +0 -437
  426. package/agentic-flow/docs/guides/agent-sdk.md +0 -234
  427. package/agentic-flow/docs/reports/QUIC_PHASE1_COMPLETE.md +0 -409
  428. package/agentic-flow/docs/reports/QUIC_PHASE1_COMPLETION.md +0 -323
  429. package/agentic-flow/docs/reviews/quic-implementation-review.md +0 -1076
  430. package/agentic-flow/docs/router/.claude-flow/metrics/agent-metrics.json +0 -1
  431. package/agentic-flow/docs/router/.claude-flow/metrics/performance.json +0 -9
  432. package/agentic-flow/docs/router/.claude-flow/metrics/task-metrics.json +0 -10
  433. package/agentic-flow/examples/PHASE-2-INTEGRATION-GUIDE.md +0 -380
  434. package/agentic-flow/examples/PHASE-2-TEST-REPORT.md +0 -325
  435. package/agentic-flow/examples/REGRESSION-TEST-RESULTS.md +0 -334
  436. package/agentic-flow/examples/TOOL-EMULATION-ARCHITECTURE.md +0 -473
  437. package/agentic-flow/examples/VALIDATION-SUMMARY.md +0 -323
  438. package/agentic-flow/examples/agentdb-memory-patterns/.claude-flow/metrics/agent-metrics.json +0 -1
  439. package/agentic-flow/examples/agentdb-memory-patterns/.claude-flow/metrics/performance.json +0 -87
  440. package/agentic-flow/examples/agentdb-memory-patterns/.claude-flow/metrics/task-metrics.json +0 -10
  441. package/agentic-flow/examples/crispr-cas13-pipeline/.github/workflows/ci.yml +0 -341
  442. package/agentic-flow/examples/crispr-cas13-pipeline/CONTRIBUTING.md +0 -388
  443. package/agentic-flow/examples/crispr-cas13-pipeline/Cargo.lock +0 -5323
  444. package/agentic-flow/examples/crispr-cas13-pipeline/Cargo.toml +0 -105
  445. package/agentic-flow/examples/crispr-cas13-pipeline/DELIVERABLES.md +0 -140
  446. package/agentic-flow/examples/crispr-cas13-pipeline/LICENSE +0 -32
  447. package/agentic-flow/examples/crispr-cas13-pipeline/PROJECT_SUMMARY.md +0 -515
  448. package/agentic-flow/examples/crispr-cas13-pipeline/PUBLISHING_NOTES.md +0 -171
  449. package/agentic-flow/examples/crispr-cas13-pipeline/PUBLISH_CHECKLIST.md +0 -216
  450. package/agentic-flow/examples/crispr-cas13-pipeline/README.md +0 -591
  451. package/agentic-flow/examples/crispr-cas13-pipeline/TEST_SUITE_SUMMARY.md +0 -318
  452. package/agentic-flow/examples/crispr-cas13-pipeline/benches/alignment_benchmark.rs +0 -207
  453. package/agentic-flow/examples/crispr-cas13-pipeline/benches/api_benchmark.rs +0 -346
  454. package/agentic-flow/examples/crispr-cas13-pipeline/benches/comprehensive_benchmarks.rs +0 -362
  455. package/agentic-flow/examples/crispr-cas13-pipeline/benches/immune_analysis_benchmark.rs +0 -369
  456. package/agentic-flow/examples/crispr-cas13-pipeline/benches/offtarget_prediction_benchmark.rs +0 -291
  457. package/agentic-flow/examples/crispr-cas13-pipeline/crates/alignment-engine/Cargo.toml +0 -23
  458. package/agentic-flow/examples/crispr-cas13-pipeline/crates/alignment-engine/src/bwa.rs +0 -255
  459. package/agentic-flow/examples/crispr-cas13-pipeline/crates/alignment-engine/src/error.rs +0 -34
  460. package/agentic-flow/examples/crispr-cas13-pipeline/crates/alignment-engine/src/lib.rs +0 -136
  461. package/agentic-flow/examples/crispr-cas13-pipeline/crates/alignment-engine/src/quality.rs +0 -287
  462. package/agentic-flow/examples/crispr-cas13-pipeline/crates/alignment-engine/tests/alignment_test.rs +0 -230
  463. package/agentic-flow/examples/crispr-cas13-pipeline/crates/api-service/Cargo.toml +0 -32
  464. package/agentic-flow/examples/crispr-cas13-pipeline/crates/api-service/src/error.rs +0 -38
  465. package/agentic-flow/examples/crispr-cas13-pipeline/crates/api-service/src/main.rs +0 -41
  466. package/agentic-flow/examples/crispr-cas13-pipeline/crates/api-service/src/routes.rs +0 -56
  467. package/agentic-flow/examples/crispr-cas13-pipeline/crates/api-service/tests/api_test.rs +0 -306
  468. package/agentic-flow/examples/crispr-cas13-pipeline/crates/data-models/Cargo.toml +0 -17
  469. package/agentic-flow/examples/crispr-cas13-pipeline/crates/data-models/src/error.rs +0 -31
  470. package/agentic-flow/examples/crispr-cas13-pipeline/crates/data-models/src/expression.rs +0 -313
  471. package/agentic-flow/examples/crispr-cas13-pipeline/crates/data-models/src/lib.rs +0 -27
  472. package/agentic-flow/examples/crispr-cas13-pipeline/crates/data-models/src/metadata.rs +0 -302
  473. package/agentic-flow/examples/crispr-cas13-pipeline/crates/data-models/src/sequencing.rs +0 -240
  474. package/agentic-flow/examples/crispr-cas13-pipeline/crates/data-models/src/targets.rs +0 -281
  475. package/agentic-flow/examples/crispr-cas13-pipeline/crates/data-models/tests/models_test.rs +0 -155
  476. package/agentic-flow/examples/crispr-cas13-pipeline/crates/immune-analyzer/Cargo.toml +0 -24
  477. package/agentic-flow/examples/crispr-cas13-pipeline/crates/immune-analyzer/src/deseq.rs +0 -265
  478. package/agentic-flow/examples/crispr-cas13-pipeline/crates/immune-analyzer/src/error.rs +0 -28
  479. package/agentic-flow/examples/crispr-cas13-pipeline/crates/immune-analyzer/src/lib.rs +0 -10
  480. package/agentic-flow/examples/crispr-cas13-pipeline/crates/immune-analyzer/src/normalization.rs +0 -173
  481. package/agentic-flow/examples/crispr-cas13-pipeline/crates/immune-analyzer/src/pathways.rs +0 -195
  482. package/agentic-flow/examples/crispr-cas13-pipeline/crates/immune-analyzer/tests/analysis_test.rs +0 -258
  483. package/agentic-flow/examples/crispr-cas13-pipeline/crates/offtarget-predictor/Cargo.toml +0 -26
  484. package/agentic-flow/examples/crispr-cas13-pipeline/crates/offtarget-predictor/src/error.rs +0 -34
  485. package/agentic-flow/examples/crispr-cas13-pipeline/crates/offtarget-predictor/src/features.rs +0 -272
  486. package/agentic-flow/examples/crispr-cas13-pipeline/crates/offtarget-predictor/src/lib.rs +0 -72
  487. package/agentic-flow/examples/crispr-cas13-pipeline/crates/offtarget-predictor/src/ml_model.rs +0 -264
  488. package/agentic-flow/examples/crispr-cas13-pipeline/crates/offtarget-predictor/src/scoring.rs +0 -292
  489. package/agentic-flow/examples/crispr-cas13-pipeline/crates/offtarget-predictor/tests/prediction_test.rs +0 -245
  490. package/agentic-flow/examples/crispr-cas13-pipeline/crates/processing-orchestrator/Cargo.toml +0 -26
  491. package/agentic-flow/examples/crispr-cas13-pipeline/crates/processing-orchestrator/src/jobs.rs +0 -27
  492. package/agentic-flow/examples/crispr-cas13-pipeline/crates/processing-orchestrator/src/main.rs +0 -35
  493. package/agentic-flow/examples/crispr-cas13-pipeline/crates/processing-orchestrator/src/scheduler.rs +0 -24
  494. package/agentic-flow/examples/crispr-cas13-pipeline/crates/processing-orchestrator/src/workers.rs +0 -17
  495. package/agentic-flow/examples/crispr-cas13-pipeline/docs/ARCHITECTURAL_DECISIONS.md +0 -429
  496. package/agentic-flow/examples/crispr-cas13-pipeline/docs/ARCHITECTURE.md +0 -2964
  497. package/agentic-flow/examples/crispr-cas13-pipeline/docs/ARCHITECTURE_SUMMARY.md +0 -286
  498. package/agentic-flow/examples/crispr-cas13-pipeline/docs/BENCHMARKS.md +0 -380
  499. package/agentic-flow/examples/crispr-cas13-pipeline/docs/PSEUDOCODE.md +0 -354
  500. package/agentic-flow/examples/crispr-cas13-pipeline/docs/REVIEW_REPORT.md +0 -543
  501. package/agentic-flow/examples/crispr-cas13-pipeline/docs/RIGHTS_PRESERVING_PLATFORM.md +0 -342
  502. package/agentic-flow/examples/crispr-cas13-pipeline/docs/SECURITY_AUDIT.md +0 -756
  503. package/agentic-flow/examples/crispr-cas13-pipeline/docs/SPECIFICATION.md +0 -719
  504. package/agentic-flow/examples/crispr-cas13-pipeline/docs/TESTING_GUIDE.md +0 -575
  505. package/agentic-flow/examples/crispr-cas13-pipeline/docs/algorithms/README.md +0 -121
  506. package/agentic-flow/examples/crispr-cas13-pipeline/docs/algorithms/alignment-module.md +0 -868
  507. package/agentic-flow/examples/crispr-cas13-pipeline/docs/algorithms/expression-module.md +0 -928
  508. package/agentic-flow/examples/crispr-cas13-pipeline/docs/algorithms/offtarget-module.md +0 -1030
  509. package/agentic-flow/examples/crispr-cas13-pipeline/docs/algorithms/reporting-module.md +0 -1135
  510. package/agentic-flow/examples/crispr-cas13-pipeline/docs/api-spec.openapi.yaml +0 -1258
  511. package/agentic-flow/examples/crispr-cas13-pipeline/docs/architecture-diagrams/c4-component.md +0 -240
  512. package/agentic-flow/examples/crispr-cas13-pipeline/docs/architecture-diagrams/c4-container.md +0 -223
  513. package/agentic-flow/examples/crispr-cas13-pipeline/docs/architecture-diagrams/c4-context.md +0 -86
  514. package/agentic-flow/examples/crispr-cas13-pipeline/docs/architecture-diagrams/sequence-diagrams.md +0 -499
  515. package/agentic-flow/examples/crispr-cas13-pipeline/docs/data-layer/schema.sql +0 -363
  516. package/agentic-flow/examples/crispr-cas13-pipeline/docs/data-models.yaml +0 -1639
  517. package/agentic-flow/examples/crispr-cas13-pipeline/docs/database-schemas.sql +0 -731
  518. package/agentic-flow/examples/crispr-cas13-pipeline/docs/deployment/alignment-service.yaml +0 -171
  519. package/agentic-flow/examples/crispr-cas13-pipeline/docs/deployment/api-gateway.yaml +0 -253
  520. package/agentic-flow/examples/crispr-cas13-pipeline/docs/deployment/namespace.yaml +0 -26
  521. package/agentic-flow/examples/crispr-cas13-pipeline/docs/deployment/postgresql.yaml +0 -119
  522. package/agentic-flow/examples/crispr-cas13-pipeline/docs/docker/alignment-service/requirements.txt +0 -18
  523. package/agentic-flow/examples/crispr-cas13-pipeline/docs/docker/diff-expr-service/requirements.txt +0 -19
  524. package/agentic-flow/examples/crispr-cas13-pipeline/docs/docker/off-target-service/requirements.txt +0 -27
  525. package/agentic-flow/examples/crispr-cas13-pipeline/docs/flowcharts/README.md +0 -130
  526. package/agentic-flow/examples/crispr-cas13-pipeline/docs/flowcharts/alignment-flowchart.md +0 -221
  527. package/agentic-flow/examples/crispr-cas13-pipeline/docs/flowcharts/expression-flowchart.md +0 -426
  528. package/agentic-flow/examples/crispr-cas13-pipeline/docs/flowcharts/offtarget-flowchart.md +0 -317
  529. package/agentic-flow/examples/crispr-cas13-pipeline/docs/flowcharts/reporting-flowchart.md +0 -502
  530. package/agentic-flow/examples/crispr-cas13-pipeline/docs/mongodb-collections.json +0 -759
  531. package/agentic-flow/examples/crispr-cas13-pipeline/docs/monitoring/alerts.yml +0 -291
  532. package/agentic-flow/examples/crispr-cas13-pipeline/docs/monitoring/grafana-dashboard-system-overview.json +0 -236
  533. package/agentic-flow/examples/crispr-cas13-pipeline/docs/monitoring/prometheus.yml +0 -213
  534. package/agentic-flow/examples/crispr-cas13-pipeline/docs/security/oauth2-authentication.md +0 -478
  535. package/agentic-flow/examples/crispr-cas13-pipeline/src/api/gateway.rs +0 -257
  536. package/agentic-flow/examples/crispr-cas13-pipeline/src/api/mod.rs +0 -1
  537. package/agentic-flow/examples/crispr-cas13-pipeline/src/audit/logger.rs +0 -345
  538. package/agentic-flow/examples/crispr-cas13-pipeline/src/audit/mod.rs +0 -1
  539. package/agentic-flow/examples/crispr-cas13-pipeline/src/governance/mod.rs +0 -1
  540. package/agentic-flow/examples/crispr-cas13-pipeline/src/governance/policy.rs +0 -339
  541. package/agentic-flow/examples/crispr-cas13-pipeline/src/lib.rs +0 -227
  542. package/agentic-flow/examples/crispr-cas13-pipeline/src/main.rs +0 -114
  543. package/agentic-flow/examples/crispr-cas13-pipeline/src/privacy/differential.rs +0 -303
  544. package/agentic-flow/examples/crispr-cas13-pipeline/src/privacy/mod.rs +0 -1
  545. package/agentic-flow/examples/crispr-cas13-pipeline/src/services/grpc.rs +0 -358
  546. package/agentic-flow/examples/crispr-cas13-pipeline/src/services/mod.rs +0 -1
  547. package/agentic-flow/examples/crispr-cas13-pipeline/tests/README.md +0 -336
  548. package/agentic-flow/examples/crispr-cas13-pipeline/tests/TESTING_SUMMARY.md +0 -386
  549. package/agentic-flow/examples/crispr-cas13-pipeline/tests/TEST_COVERAGE_REPORT.md +0 -347
  550. package/agentic-flow/examples/crispr-cas13-pipeline/tests/fixtures/mod.rs +0 -400
  551. package/agentic-flow/examples/crispr-cas13-pipeline/tests/integration/enhanced_integration_tests.rs +0 -432
  552. package/agentic-flow/examples/crispr-cas13-pipeline/tests/integration_test.rs +0 -340
  553. package/agentic-flow/examples/crispr-cas13-pipeline/tests/load_testing_k6.js +0 -269
  554. package/agentic-flow/examples/crispr-cas13-pipeline/tests/load_testing_locust.py +0 -290
  555. package/agentic-flow/examples/crispr-cas13-pipeline/tests/property/enhanced_property_tests.rs +0 -479
  556. package/agentic-flow/examples/crispr-cas13-pipeline/tests/property_tests.rs +0 -371
  557. package/agentic-flow/examples/crispr-cas13-pipeline/tests/rights_preserving_test.rs +0 -251
  558. package/agentic-flow/examples/crispr-cas13-pipeline/tests/unit/alignment_tests.rs +0 -307
  559. package/agentic-flow/examples/crispr-cas13-pipeline/tests/unit/api_service_tests.rs +0 -376
  560. package/agentic-flow/examples/crispr-cas13-pipeline/tests/unit/data_models_tests.rs +0 -283
  561. package/agentic-flow/examples/crispr-cas13-pipeline/tests/unit/immune_analyzer_tests.rs +0 -374
  562. package/agentic-flow/examples/crispr-cas13-pipeline/tests/unit/offtarget_tests.rs +0 -334
  563. package/agentic-flow/examples/crispr-cas13-pipeline/tests/unit/orchestrator_tests.rs +0 -466
  564. package/agentic-flow/examples/federated-agentdb/README.md +0 -494
  565. package/agentic-flow/memory-backup.json +0 -48
  566. package/agentic-flow/package-lock.json +0 -3974
  567. package/agentic-flow/package.json +0 -182
  568. package/agentic-flow/patches/agentdb-fix-imports.patch +0 -13
  569. package/agentic-flow/path/to/file.py +0 -2
  570. package/agentic-flow/path/to/your/script.py +0 -2
  571. package/agentic-flow/python/calculation.py +0 -1
  572. package/agentic-flow/python/operation.py +0 -1
  573. package/agentic-flow/run-agentdb.sh +0 -8
  574. package/agentic-flow/supabase/.temp/cli-latest +0 -1
  575. package/agentic-flow/supabase/.temp/gotrue-version +0 -1
  576. package/agentic-flow/supabase/.temp/pooler-url +0 -1
  577. package/agentic-flow/supabase/.temp/postgres-version +0 -1
  578. package/agentic-flow/supabase/.temp/project-ref +0 -1
  579. package/agentic-flow/supabase/.temp/rest-version +0 -1
  580. package/agentic-flow/supabase/.temp/storage-migration +0 -1
  581. package/agentic-flow/supabase/.temp/storage-version +0 -1
  582. package/agentic-flow/test-tool-commands.sh +0 -26
  583. package/agentic-llm/DEPLOYMENT_STATUS_UPDATE.md +0 -30
  584. package/agentic-llm/MONITOR_SUMMARY.md +0 -116
  585. package/agentic-llm/benchmarks/DEPLOYMENT_SUMMARY.md +0 -106
  586. package/agentic-llm/benchmarks/benchmark.py +0 -419
  587. package/agentic-llm/benchmarks/comparison/optimization_comparison.json +0 -57
  588. package/agentic-llm/benchmarks/finetune_comparison.py +0 -252
  589. package/agentic-llm/benchmarks/results/.gitkeep +0 -2
  590. package/agentic-llm/benchmarks/results/README.md +0 -59
  591. package/agentic-llm/benchmarks/results/agent-booster-results.json +0 -116
  592. package/agentic-llm/benchmarks/results/morph-baseline-results.json +0 -168
  593. package/agentic-llm/benchmarks/run_comparison.py +0 -246
  594. package/agentic-llm/check-training.sh +0 -27
  595. package/agentic-llm/claude_sdk/integration.py +0 -335
  596. package/agentic-llm/cloudrun/cloud_runner.py +0 -390
  597. package/agentic-llm/cloudrun/deploy.sh +0 -83
  598. package/agentic-llm/cloudrun/entrypoint.sh +0 -10
  599. package/agentic-llm/cloudrun/health_server.py +0 -114
  600. package/agentic-llm/cloudrun/setup-secrets.sh +0 -26
  601. package/agentic-llm/cloudrun/upload_to_huggingface.py +0 -277
  602. package/agentic-llm/configs/training_config.json +0 -71
  603. package/agentic-llm/deployment/DEPLOYMENT_INSTRUCTIONS.md +0 -93
  604. package/agentic-llm/deployment/fly.toml +0 -52
  605. package/agentic-llm/docs/BENCHMARK_OPTIMIZATION_GUIDE.md +0 -435
  606. package/agentic-llm/docs/CLOUD_RUN_DEPLOYMENT.md +0 -368
  607. package/agentic-llm/docs/DEPLOYMENT_GUIDE.md +0 -475
  608. package/agentic-llm/docs/DEPLOYMENT_READY.txt +0 -98
  609. package/agentic-llm/docs/DEPLOYMENT_STATUS.md +0 -389
  610. package/agentic-llm/docs/DEPLOYMENT_SUMMARY.md +0 -358
  611. package/agentic-llm/docs/DEPLOY_STATUS.md +0 -69
  612. package/agentic-llm/docs/FINETUNING_GUIDE.md +0 -483
  613. package/agentic-llm/docs/INDEX.md +0 -43
  614. package/agentic-llm/docs/OPTIMIZATION_RESULTS.md +0 -375
  615. package/agentic-llm/docs/PHI4_FINETUNING_RESEARCH.md +0 -1352
  616. package/agentic-llm/docs/QUICKSTART.md +0 -124
  617. package/agentic-llm/docs/README.md +0 -389
  618. package/agentic-llm/docs/TRAINING_MONITOR.md +0 -77
  619. package/agentic-llm/docs/USAGE_GUIDE.md +0 -499
  620. package/agentic-llm/monitor-loop.sh +0 -52
  621. package/agentic-llm/monitor-training.sh +0 -56
  622. package/agentic-llm/quantization/quantize.py +0 -255
  623. package/agentic-llm/requirements.txt +0 -43
  624. package/agentic-llm/scripts/deploy.sh +0 -120
  625. package/agentic-llm/scripts/run_benchmarks.sh +0 -53
  626. package/agentic-llm/scripts/run_finetuning.sh +0 -90
  627. package/agentic-llm/scripts/test_local.sh +0 -77
  628. package/agentic-llm/training/data/mcp_tools_dataset.json +0 -140
  629. package/agentic-llm/training/finetune_mcp.py +0 -306
  630. package/agentic-llm/training/mcp_dataset.py +0 -395
  631. package/agentic-llm/training/train.py +0 -347
  632. package/agentic-llm/validation/data/mcp_validation_set.json +0 -37
  633. package/agentic-llm/validation/mcp_validator.py +0 -267
  634. package/agentic-llm/validation/validator.py +0 -319
  635. package/bench/.claude-flow/metrics/agent-metrics.json +0 -1
  636. package/bench/.claude-flow/metrics/performance.json +0 -9
  637. package/bench/.claude-flow/metrics/task-metrics.json +0 -10
  638. package/bench/BENCHMARK-GUIDE.md +0 -506
  639. package/bench/BENCHMARK-RESULTS-TEMPLATE.md +0 -253
  640. package/bench/COMPLETION-SUMMARY.md +0 -409
  641. package/bench/README.md +0 -217
  642. package/bench/agents/baseline-agent.js +0 -69
  643. package/bench/agents/baseline-agent.ts +0 -78
  644. package/bench/agents/reasoningbank-agent.js +0 -141
  645. package/bench/agents/reasoningbank-agent.ts +0 -173
  646. package/bench/benchmark.js +0 -244
  647. package/bench/benchmark.ts +0 -309
  648. package/bench/config.json +0 -79
  649. package/bench/lib/metrics.js +0 -163
  650. package/bench/lib/metrics.ts +0 -216
  651. package/bench/lib/report-generator.js +0 -252
  652. package/bench/lib/report-generator.ts +0 -266
  653. package/bench/lib/types.js +0 -4
  654. package/bench/lib/types.ts +0 -117
  655. package/bench/package.json +0 -36
  656. package/bench/run-benchmark.sh +0 -67
  657. package/bench/scenarios/api-design-tasks.js +0 -175
  658. package/bench/scenarios/api-design-tasks.ts +0 -199
  659. package/bench/scenarios/coding-tasks.js +0 -199
  660. package/bench/scenarios/coding-tasks.ts +0 -223
  661. package/bench/scenarios/debugging-tasks.js +0 -216
  662. package/bench/scenarios/debugging-tasks.ts +0 -234
  663. package/bench/scenarios/problem-solving-tasks.js +0 -172
  664. package/bench/scenarios/problem-solving-tasks.ts +0 -196
  665. package/bench/tsconfig.json +0 -26
  666. package/benchmarks/quic-transport.bench.ts +0 -584
  667. package/claude-flow +0 -34
  668. package/crates/agentic-flow-quic/.claude-flow/metrics/agent-metrics.json +0 -1
  669. package/crates/agentic-flow-quic/.claude-flow/metrics/performance.json +0 -87
  670. package/crates/agentic-flow-quic/.claude-flow/metrics/task-metrics.json +0 -10
  671. package/crates/agentic-flow-quic/Cargo.toml +0 -66
  672. package/crates/agentic-flow-quic/IMPLEMENTATION.md +0 -299
  673. package/crates/agentic-flow-quic/README.md +0 -75
  674. package/crates/agentic-flow-quic/benches/quic_bench.rs +0 -229
  675. package/crates/agentic-flow-quic/build.rs +0 -23
  676. package/crates/agentic-flow-quic/src/client.rs +0 -242
  677. package/crates/agentic-flow-quic/src/error.rs +0 -100
  678. package/crates/agentic-flow-quic/src/lib.rs +0 -76
  679. package/crates/agentic-flow-quic/src/server.rs +0 -213
  680. package/crates/agentic-flow-quic/src/types.rs +0 -164
  681. package/crates/agentic-flow-quic/src/wasm.rs +0 -143
  682. package/crates/agentic-flow-quic/src/wasm_stub.rs +0 -61
  683. package/crates/agentic-flow-quic/tests/integration_test.rs +0 -254
  684. package/crates/agentic-flow-quic/wasm-pack-build.sh +0 -17
  685. package/crates/sqlite-vector-core/.claude-flow/metrics/agent-metrics.json +0 -1
  686. package/crates/sqlite-vector-core/.claude-flow/metrics/performance.json +0 -87
  687. package/crates/sqlite-vector-core/.claude-flow/metrics/task-metrics.json +0 -10
  688. package/crates/sqlite-vector-core/Cargo.lock +0 -942
  689. package/crates/sqlite-vector-wasm/.claude-flow/metrics/agent-metrics.json +0 -1
  690. package/crates/sqlite-vector-wasm/.claude-flow/metrics/performance.json +0 -87
  691. package/crates/sqlite-vector-wasm/.claude-flow/metrics/task-metrics.json +0 -10
  692. package/crates/sqlite-vector-wasm/Cargo.lock +0 -499
  693. package/docs/README.md +0 -85
  694. package/docs/REORGANIZATION_PLAN.md +0 -102
  695. package/docs/REORGANIZATION_SUMMARY.md +0 -183
  696. package/docs/agent-integration-guide.md +0 -483
  697. package/docs/api/mcp-tools/mcp-documentation-review.md +0 -834
  698. package/docs/api/mcp-tools/mcp-tools-architecture.md +0 -1082
  699. package/docs/architecture/FEDERATED-AGENTDB-EPHEMERAL-AGENTS.md +0 -680
  700. package/docs/architecture/FEDERATION-CLI-VALIDATION-REPORT.md +0 -491
  701. package/docs/features/README.md +0 -87
  702. package/docs/features/agent-booster/00-INDEX.md +0 -230
  703. package/docs/features/agent-booster/00-OVERVIEW.md +0 -454
  704. package/docs/features/agent-booster/01-ARCHITECTURE.md +0 -699
  705. package/docs/features/agent-booster/02-INTEGRATION.md +0 -771
  706. package/docs/features/agent-booster/03-BENCHMARKS.md +0 -616
  707. package/docs/features/agent-booster/04-NPM-SDK.md +0 -673
  708. package/docs/features/agent-booster/GITHUB-ISSUE.md +0 -523
  709. package/docs/features/agent-booster/README.md +0 -44
  710. package/docs/features/agentdb/AGENTDB-INTEGRATION-COMPLETE.md +0 -590
  711. package/docs/features/agentdb/AGENTDB-LEARNING-SYSTEMS-REPORT.md +0 -783
  712. package/docs/features/agentdb/AGENTDB-MCP-SECURITY-AUDIT.md +0 -877
  713. package/docs/features/agentdb/AGENTDB_INTEGRATION_PLAN.md +0 -776
  714. package/docs/features/agentdb/CAUSAL_RECALL_SEARCH_IMPLEMENTATION.md +0 -141
  715. package/docs/features/agentdb/CLI_GUIDE.md +0 -826
  716. package/docs/features/agentdb/CORE_TOOLS_6-10_IMPLEMENTATION.md +0 -376
  717. package/docs/features/agentdb/LEARNING_TOOLS_6-10.md +0 -474
  718. package/docs/features/agentdb/MCP_TOOLS_IMPLEMENTATION.md +0 -373
  719. package/docs/features/agentdb/README.md +0 -86
  720. package/docs/features/agentdb/TEST_SUITE_SUMMARY.md +0 -222
  721. package/docs/features/agentdb/VERSION_1.3.0_RELEASE.md +0 -199
  722. package/docs/features/agentdb/WASM-VECTOR-IMPLEMENTATION.md +0 -422
  723. package/docs/features/agentdb/agentdb-code-quality-analysis.md +0 -1050
  724. package/docs/features/agentdb/agentdb-tools-verification.md +0 -498
  725. package/docs/features/federation/FEDERATION-CLI-INTEGRATION.md +0 -494
  726. package/docs/features/federation/FEDERATION-IMPLEMENTATION-SUMMARY.md +0 -546
  727. package/docs/features/federation/FEDERATION-TEST-REPORT.md +0 -504
  728. package/docs/features/federation/README.md +0 -35
  729. package/docs/features/quic/BUILD_INSTRUCTIONS.md +0 -220
  730. package/docs/features/quic/FINAL-VALIDATION.md +0 -336
  731. package/docs/features/quic/IMPLEMENTATION-COMPLETE-SUMMARY.md +0 -349
  732. package/docs/features/quic/IMPLEMENTATION_STATUS.md +0 -234
  733. package/docs/features/quic/PERFORMANCE-VALIDATION.md +0 -282
  734. package/docs/features/quic/QUIC-INTEGRATION-SUMMARY.md +0 -545
  735. package/docs/features/quic/QUIC-INTEGRATION.md +0 -502
  736. package/docs/features/quic/QUIC-README.md +0 -226
  737. package/docs/features/quic/QUIC-STATUS-OLD.md +0 -513
  738. package/docs/features/quic/QUIC-STATUS.md +0 -451
  739. package/docs/features/quic/QUIC-VALIDATION-REPORT.md +0 -370
  740. package/docs/features/quic/QUIC_FINAL_STATUS.md +0 -399
  741. package/docs/features/quic/QUIC_IMPLEMENTATION_SUMMARY.md +0 -607
  742. package/docs/features/quic/README-CONDENSED.md +0 -447
  743. package/docs/features/quic/README.md +0 -79
  744. package/docs/features/quic/README_QUIC_PHASE1.md +0 -117
  745. package/docs/features/quic/WASM-INTEGRATION-COMPLETE.md +0 -382
  746. package/docs/features/quic/quic-research.md +0 -1415
  747. package/docs/features/quic/quic-tutorial.md +0 -485
  748. package/docs/features/reasoningbank/MEMORY_VALIDATION_REPORT.md +0 -417
  749. package/docs/features/reasoningbank/README.md +0 -64
  750. package/docs/features/reasoningbank/REASONING-AGENTS.md +0 -482
  751. package/docs/features/reasoningbank/REASONINGBANK-BENCHMARK-RESULTS.md +0 -166
  752. package/docs/features/reasoningbank/REASONINGBANK-BENCHMARK.md +0 -396
  753. package/docs/features/reasoningbank/REASONINGBANK-CLI-INTEGRATION.md +0 -455
  754. package/docs/features/reasoningbank/REASONINGBANK-DEMO.md +0 -419
  755. package/docs/features/reasoningbank/REASONINGBANK-VALIDATION.md +0 -532
  756. package/docs/features/reasoningbank/REASONINGBANK_ARCHITECTURE.md +0 -663
  757. package/docs/features/reasoningbank/REASONINGBANK_BACKENDS.md +0 -375
  758. package/docs/features/reasoningbank/REASONINGBANK_FIXES.md +0 -455
  759. package/docs/features/reasoningbank/REASONINGBANK_IMPLEMENTATION_STATUS.md +0 -478
  760. package/docs/features/reasoningbank/REASONINGBANK_INTEGRATION_PLAN.md +0 -1059
  761. package/docs/features/reasoningbank/REASONINGBANK_INVESTIGATION.md +0 -380
  762. package/docs/features/router/README.md +0 -38
  763. package/docs/features/router/ROUTER_CONFIG_REFERENCE.md +0 -577
  764. package/docs/features/router/ROUTER_USER_GUIDE.md +0 -865
  765. package/docs/features/router/TOP20_MODELS_MATRIX.md +0 -80
  766. package/docs/guides/MCP-AUTHENTICATION.md +0 -2017
  767. package/docs/guides/MCP-QUICKSTART.md +0 -521
  768. package/docs/guides/MCP-TROUBLESHOOTING.md +0 -1602
  769. package/docs/guides/NPM_STATS_GUIDE.md +0 -407
  770. package/docs/parallel-execution-implementation.md +0 -525
  771. package/docs/plans/.claude-flow/metrics/agent-metrics.json +0 -1
  772. package/docs/plans/.claude-flow/metrics/performance.json +0 -87
  773. package/docs/plans/.claude-flow/metrics/task-metrics.json +0 -10
  774. package/docs/releases/archive/GITHUB-ISSUE-ADDENDUM-v1.4.6.md +0 -1529
  775. package/docs/releases/archive/GITHUB-ISSUE-BUILD-FIX.md +0 -756
  776. package/docs/releases/archive/GITHUB-ISSUE-REASONINGBANK-BENCHMARK.md +0 -643
  777. package/docs/releases/archive/GITHUB-ISSUE-v1.4.6.md +0 -1453
  778. package/docs/releases/archive/GITHUB-ISSUE-v1.5.0.md +0 -468
  779. package/docs/releases/archive/HOTFIX-v1.2.1.md +0 -315
  780. package/docs/releases/archive/INTEGRATION-COMPLETE.md +0 -291
  781. package/docs/releases/archive/MIGRATION-STATUS.md +0 -118
  782. package/docs/releases/archive/MIGRATION_v1.7.0.md +0 -299
  783. package/docs/releases/archive/NPM-PUBLISH-GUIDE-v1.2.0.md +0 -440
  784. package/docs/releases/archive/PUBLICATION_REPORT_v1.5.11.md +0 -421
  785. package/docs/releases/archive/PUBLISH-COMPLETE-v1.2.0.md +0 -308
  786. package/docs/releases/archive/README.md +0 -82
  787. package/docs/releases/archive/RELEASE-v1.2.0.md +0 -339
  788. package/docs/releases/archive/VALIDATION_REPORT_v1.7.0.md +0 -418
  789. package/docs/releases/archive/ZERO-BUILD-MIGRATION.md +0 -227
  790. package/docs/releases/archive/github-issue-agentdb-integration.md +0 -379
  791. package/docs/releases/archive/v1.4.6-reasoningbank-release.md +0 -541
  792. package/docs/releases/archive/v1.4.7-bugfix.md +0 -212
  793. package/docs/releases/archive/v1.5.14-QUIC-TRANSPORT.md +0 -201
  794. package/docs/releases/archive/v1.5.9-DOCKER-VERIFICATION.md +0 -263
  795. package/docs/releases/archive/v1.5.9-RELEASE-SUMMARY.md +0 -222
  796. package/docs/swarm-optimization-report.md +0 -626
  797. package/index.html +0 -15
  798. package/memory/agents/README.md +0 -31
  799. package/memory/claude-flow@alpha-data.json +0 -5
  800. package/memory/memory-store.json +0 -69
  801. package/memory/sessions/README.md +0 -32
  802. package/src/App.css +0 -5
  803. package/src/App.tsx +0 -15
  804. package/src/components/AgentTypes.tsx +0 -122
  805. package/src/components/CoreComponents.tsx +0 -131
  806. package/src/components/Features.tsx +0 -102
  807. package/src/components/Footer.tsx +0 -159
  808. package/src/components/Hero.tsx +0 -87
  809. package/src/components/PerformanceMetrics.tsx +0 -125
  810. package/src/components/QuickStart.tsx +0 -178
  811. package/src/index.css +0 -87
  812. package/src/main.tsx +0 -10
  813. package/src/pages/LandingPage.tsx +0 -23
  814. package/src/transport/quic.ts +0 -258
  815. package/tailwind.config.ts +0 -79
  816. package/vite.config.ts +0 -20
  817. /package/{agentic-flow/.claude → .claude}/agents/MIGRATION_SUMMARY.md +0 -0
  818. /package/{agentic-flow/.claude → .claude}/agents/README.md +0 -0
  819. /package/{agentic-flow/.claude → .claude}/agents/consensus/README.md +0 -0
  820. /package/{agentic-flow/.claude → .claude}/agents/custom/test-long-runner.md +0 -0
  821. /package/.claude/agents/{reasoning → goal}/agent.md +0 -0
  822. /package/{agentic-flow/.claude → .claude}/agents/optimization/README.md +0 -0
  823. /package/{agentic-flow/.claude → .claude}/agents/payments/agentic-payments.md +0 -0
  824. /package/{agentic-flow/.claude → .claude}/agents/sublinear/consensus-coordinator.md +0 -0
  825. /package/{agentic-flow/.claude → .claude}/agents/sublinear/matrix-optimizer.md +0 -0
  826. /package/{agentic-flow/.claude → .claude}/agents/sublinear/pagerank-analyzer.md +0 -0
  827. /package/{agentic-flow/.claude → .claude}/agents/sublinear/performance-optimizer.md +0 -0
  828. /package/{agentic-flow/.claude → .claude}/agents/sublinear/trading-predictor.md +0 -0
  829. /package/{agentic-flow/.claude → .claude}/agents/swarm/README.md +0 -0
  830. /package/{agentic-flow/.claude → .claude}/agents/test-neural.md +0 -0
  831. /package/{agentic-flow/.claude → .claude}/answer.md +0 -0
  832. /package/{agentic-flow/.claude → .claude}/commands/claude-flow-help.md +0 -0
  833. /package/{agentic-flow/.claude → .claude}/commands/claude-flow-memory.md +0 -0
  834. /package/{agentic-flow/.claude → .claude}/commands/claude-flow-swarm.md +0 -0
  835. /package/{agentic-flow/.claude → .claude}/commands/pair/README.md +0 -0
  836. /package/{agentic-flow/.claude → .claude}/commands/sparc/ask.md +0 -0
  837. /package/{agentic-flow/.claude → .claude}/commands/sparc/code.md +0 -0
  838. /package/{agentic-flow/.claude → .claude}/commands/sparc/debug.md +0 -0
  839. /package/{agentic-flow/.claude → .claude}/commands/sparc/devops.md +0 -0
  840. /package/{agentic-flow/.claude → .claude}/commands/sparc/docs-writer.md +0 -0
  841. /package/{agentic-flow/.claude → .claude}/commands/sparc/integration.md +0 -0
  842. /package/{agentic-flow/.claude → .claude}/commands/sparc/mcp.md +0 -0
  843. /package/{agentic-flow/.claude → .claude}/commands/sparc/post-deployment-monitoring-mode.md +0 -0
  844. /package/{agentic-flow/.claude → .claude}/commands/sparc/refinement-optimization-mode.md +0 -0
  845. /package/{agentic-flow/.claude → .claude}/commands/sparc/security-review.md +0 -0
  846. /package/{agentic-flow/.claude → .claude}/commands/sparc/sparc.md +0 -0
  847. /package/{agentic-flow/.claude → .claude}/commands/sparc/spec-pseudocode.md +0 -0
  848. /package/{agentic-flow/.claude → .claude}/commands/sparc/supabase-admin.md +0 -0
  849. /package/{agentic-flow/.claude → .claude}/commands/sparc/tutorial.md +0 -0
  850. /package/{agentic-flow/.claude → .claude}/commands/sparc.md +0 -0
  851. /package/{agentic-flow/.claude → .claude}/mcp.json +0 -0
  852. /package/{agentic-flow/.claude → .claude}/openrouter-models-research.md +0 -0
  853. /package/{agentic-flow/.claude → .claude}/openrouter-quick-reference.md +0 -0
  854. /package/{agentic-flow/.claude → .claude}/settings-backup.json +0 -0
  855. /package/{agentic-flow/.claude → .claude}/settings-optimized.json +0 -0
  856. /package/{agentic-flow/.claude → .claude}/settings-simple.json +0 -0
  857. /package/{.claude-flow → .claude/skills/.claude-flow}/metrics/agent-metrics.json +0 -0
  858. /package/{agentic-flow/.claude → .claude}/skills/.claude-flow/metrics/performance.json +0 -0
  859. /package/{agentic-flow/.claude → .claude}/skills/.claude-flow/metrics/task-metrics.json +0 -0
  860. /package/{agentic-flow/.claude/skills → .claude/skills/skill-builder}/.claude-flow/metrics/agent-metrics.json +0 -0
  861. /package/{agentic-flow/.claude → .claude}/skills/skill-builder/.claude-flow/metrics/performance.json +0 -0
  862. /package/{agentic-flow/.claude → .claude}/skills/skill-builder/.claude-flow/metrics/task-metrics.json +0 -0
  863. /package/{agentic-flow/dist → dist}/agentdb/benchmarks/comprehensive-benchmark.js +0 -0
  864. /package/{agentic-flow/dist → dist}/agentdb/benchmarks/frontier-benchmark.js +0 -0
  865. /package/{agentic-flow/dist → dist}/agentdb/benchmarks/reflexion-benchmark.js +0 -0
  866. /package/{agentic-flow/dist → dist}/agentdb/cli/agentdb-cli.js +0 -0
  867. /package/{agentic-flow/dist → dist}/agentdb/controllers/CausalMemoryGraph.js +0 -0
  868. /package/{agentic-flow/dist → dist}/agentdb/controllers/CausalRecall.js +0 -0
  869. /package/{agentic-flow/dist → dist}/agentdb/controllers/EmbeddingService.js +0 -0
  870. /package/{agentic-flow/dist → dist}/agentdb/controllers/ExplainableRecall.js +0 -0
  871. /package/{agentic-flow/dist → dist}/agentdb/controllers/NightlyLearner.js +0 -0
  872. /package/{agentic-flow/dist → dist}/agentdb/controllers/ReflexionMemory.js +0 -0
  873. /package/{agentic-flow/dist → dist}/agentdb/controllers/SkillLibrary.js +0 -0
  874. /package/{agentic-flow/dist → dist}/agentdb/controllers/frontier-index.js +0 -0
  875. /package/{agentic-flow/dist → dist}/agentdb/controllers/index.js +0 -0
  876. /package/{agentic-flow/dist → dist}/agentdb/index.js +0 -0
  877. /package/{agentic-flow/dist → dist}/agentdb/optimizations/BatchOperations.js +0 -0
  878. /package/{agentic-flow/dist → dist}/agentdb/optimizations/QueryOptimizer.js +0 -0
  879. /package/{agentic-flow/dist → dist}/agentdb/optimizations/index.js +0 -0
  880. /package/{agentic-flow/dist → dist}/agents/claudeAgent.js +0 -0
  881. /package/{agentic-flow/dist → dist}/agents/claudeAgentDirect.js +0 -0
  882. /package/{agentic-flow/dist → dist}/agents/claudeFlowAgent.js +0 -0
  883. /package/{agentic-flow/dist → dist}/agents/codeReviewAgent.js +0 -0
  884. /package/{agentic-flow/dist → dist}/agents/dataAgent.js +0 -0
  885. /package/{agentic-flow/dist → dist}/agents/directApiAgent.js +0 -0
  886. /package/{agentic-flow/dist → dist}/agents/webResearchAgent.js +0 -0
  887. /package/{agentic-flow/dist → dist}/cli/agent-manager.js +0 -0
  888. /package/{agentic-flow/dist → dist}/cli/claude-code-wrapper.js +0 -0
  889. /package/{agentic-flow/dist → dist}/cli/federation-cli.js +0 -0
  890. /package/{agentic-flow/dist → dist}/cli/mcp-manager.js +0 -0
  891. /package/{agentic-flow/dist → dist}/cli/mcp.js +0 -0
  892. /package/{agentic-flow/dist → dist}/cli/skills-manager.js +0 -0
  893. /package/{agentic-flow/dist → dist}/cli/update-message.js +0 -0
  894. /package/{agentic-flow/dist → dist}/cli-standalone-proxy.js +0 -0
  895. /package/{agentic-flow/dist → dist}/config/claudeFlow.js +0 -0
  896. /package/{agentic-flow/dist → dist}/config/quic.js +0 -0
  897. /package/{agentic-flow/dist → dist}/config/tools.js +0 -0
  898. /package/{agentic-flow/dist → dist}/examples/multi-agent-orchestration.js +0 -0
  899. /package/{agentic-flow/dist → dist}/examples/use-goal-planner.js +0 -0
  900. /package/{agentic-flow/dist → dist}/federation/EphemeralAgent.js +0 -0
  901. /package/{agentic-flow/dist → dist}/federation/FederationHub.js +0 -0
  902. /package/{agentic-flow/dist → dist}/federation/FederationHubClient.js +0 -0
  903. /package/{agentic-flow/dist → dist}/federation/FederationHubServer.js +0 -0
  904. /package/{agentic-flow/dist → dist}/federation/SecurityManager.js +0 -0
  905. /package/{agentic-flow/dist → dist}/federation/debug/agent-debug-stream.js +0 -0
  906. /package/{agentic-flow/dist → dist}/federation/debug/debug-stream.js +0 -0
  907. /package/{agentic-flow/dist → dist}/federation/index.js +0 -0
  908. /package/{agentic-flow/dist → dist}/federation/integrations/realtime-federation.js +0 -0
  909. /package/{agentic-flow/dist → dist}/federation/integrations/supabase-adapter-debug.js +0 -0
  910. /package/{agentic-flow/dist → dist}/federation/integrations/supabase-adapter.js +0 -0
  911. /package/{agentic-flow/dist → dist}/health.js +0 -0
  912. /package/{agentic-flow/dist → dist}/index.js +0 -0
  913. /package/{agentic-flow/dist → dist}/mcp/claudeFlowSdkServer.js +0 -0
  914. /package/{agentic-flow/dist → dist}/mcp/fastmcp/servers/claude-flow-sdk.js +0 -0
  915. /package/{agentic-flow/dist → dist}/mcp/fastmcp/servers/http-sse.js +0 -0
  916. /package/{agentic-flow/dist → dist}/mcp/fastmcp/servers/http-streaming-updated.js +0 -0
  917. /package/{agentic-flow/dist → dist}/mcp/fastmcp/servers/poc-stdio.js +0 -0
  918. /package/{agentic-flow/dist → dist}/mcp/fastmcp/servers/stdio-full.js +0 -0
  919. /package/{agentic-flow/dist → dist}/mcp/fastmcp/tools/agent/add-agent.js +0 -0
  920. /package/{agentic-flow/dist → dist}/mcp/fastmcp/tools/agent/add-command.js +0 -0
  921. /package/{agentic-flow/dist → dist}/mcp/fastmcp/tools/agent/execute.js +0 -0
  922. /package/{agentic-flow/dist → dist}/mcp/fastmcp/tools/agent/list.js +0 -0
  923. /package/{agentic-flow/dist → dist}/mcp/fastmcp/tools/agent/parallel.js +0 -0
  924. /package/{agentic-flow/dist → dist}/mcp/fastmcp/tools/swarm/init.js +0 -0
  925. /package/{agentic-flow/dist → dist}/mcp/fastmcp/tools/swarm/orchestrate.js +0 -0
  926. /package/{agentic-flow/dist → dist}/mcp/fastmcp/tools/swarm/spawn.js +0 -0
  927. /package/{agentic-flow/dist → dist}/mcp/fastmcp/types/index.js +0 -0
  928. /package/{agentic-flow/dist → dist}/mcp/standalone-stdio.js +0 -0
  929. /package/{agentic-flow/dist → dist}/memory/SharedMemoryPool.js +0 -0
  930. /package/{agentic-flow/dist → dist}/memory/index.js +0 -0
  931. /package/{agentic-flow/dist → dist}/proxy/anthropic-to-gemini.js +0 -0
  932. /package/{agentic-flow/dist → dist}/proxy/anthropic-to-onnx.js +0 -0
  933. /package/{agentic-flow/dist → dist}/proxy/anthropic-to-openrouter.js +0 -0
  934. /package/{agentic-flow/dist → dist}/proxy/anthropic-to-requesty.js +0 -0
  935. /package/{agentic-flow/dist → dist}/proxy/quic-proxy.js +0 -0
  936. /package/{agentic-flow/dist → dist}/proxy/tool-emulation.js +0 -0
  937. /package/{agentic-flow/dist → dist}/reasoningbank/AdvancedMemory.js +0 -0
  938. /package/{agentic-flow/dist → dist}/reasoningbank/HybridBackend.js +0 -0
  939. /package/{agentic-flow/dist → dist}/reasoningbank/agentdb-adapter.js +0 -0
  940. /package/{agentic-flow/dist → dist}/reasoningbank/backend-selector.js +0 -0
  941. /package/{agentic-flow/dist → dist}/reasoningbank/benchmark.js +0 -0
  942. /package/{agentic-flow/dist → dist}/reasoningbank/config/reasoningbank-types.js +0 -0
  943. /package/{agentic-flow/dist → dist}/reasoningbank/config/reasoningbank.yaml +0 -0
  944. /package/{agentic-flow/dist → dist}/reasoningbank/core/consolidate.js +0 -0
  945. /package/{agentic-flow/dist → dist}/reasoningbank/core/database.js +0 -0
  946. /package/{agentic-flow/dist → dist}/reasoningbank/core/distill.js +0 -0
  947. /package/{agentic-flow/dist → dist}/reasoningbank/core/judge.js +0 -0
  948. /package/{agentic-flow/dist → dist}/reasoningbank/core/matts.js +0 -0
  949. /package/{agentic-flow/dist → dist}/reasoningbank/core/memory-engine.js +0 -0
  950. /package/{agentic-flow/dist → dist}/reasoningbank/core/retrieve.js +0 -0
  951. /package/{agentic-flow/dist → dist}/reasoningbank/db/queries.js +0 -0
  952. /package/{agentic-flow/dist → dist}/reasoningbank/db/schema.js +0 -0
  953. /package/{agentic-flow/dist → dist}/reasoningbank/demo-comparison.js +0 -0
  954. /package/{agentic-flow/dist → dist}/reasoningbank/hooks/post-task.js +0 -0
  955. /package/{agentic-flow/dist → dist}/reasoningbank/hooks/pre-task.js +0 -0
  956. /package/{agentic-flow/dist → dist}/reasoningbank/index-new.js +0 -0
  957. /package/{agentic-flow/dist → dist}/reasoningbank/index.js +0 -0
  958. /package/{agentic-flow/dist → dist}/reasoningbank/prompts/distill-failure.json +0 -0
  959. /package/{agentic-flow/dist → dist}/reasoningbank/prompts/distill-success.json +0 -0
  960. /package/{agentic-flow/dist → dist}/reasoningbank/prompts/judge.json +0 -0
  961. /package/{agentic-flow/dist → dist}/reasoningbank/prompts/matts-aggregate.json +0 -0
  962. /package/{agentic-flow/dist → dist}/reasoningbank/test-integration.js +0 -0
  963. /package/{agentic-flow/dist → dist}/reasoningbank/test-retrieval.js +0 -0
  964. /package/{agentic-flow/dist → dist}/reasoningbank/test-validation.js +0 -0
  965. /package/{agentic-flow/dist → dist}/reasoningbank/types/index.js +0 -0
  966. /package/{agentic-flow/dist → dist}/reasoningbank/utils/config.js +0 -0
  967. /package/{agentic-flow/dist → dist}/reasoningbank/utils/embeddings.js +0 -0
  968. /package/{agentic-flow/dist → dist}/reasoningbank/utils/mmr.js +0 -0
  969. /package/{agentic-flow/dist → dist}/reasoningbank/utils/pii-scrubber.js +0 -0
  970. /package/{agentic-flow/dist → dist}/reasoningbank/wasm-adapter.js +0 -0
  971. /package/{agentic-flow/dist → dist}/router/model-mapping.js +0 -0
  972. /package/{agentic-flow/dist → dist}/router/providers/anthropic.js +0 -0
  973. /package/{agentic-flow/dist → dist}/router/providers/gemini.js +0 -0
  974. /package/{agentic-flow/dist → dist}/router/providers/onnx-local-optimized.js +0 -0
  975. /package/{agentic-flow/dist → dist}/router/providers/onnx-local.js +0 -0
  976. /package/{agentic-flow/dist → dist}/router/providers/onnx-phi4.js +0 -0
  977. /package/{agentic-flow/dist → dist}/router/providers/onnx.js +0 -0
  978. /package/{agentic-flow/dist → dist}/router/providers/openrouter.js +0 -0
  979. /package/{agentic-flow/dist → dist}/router/router.js +0 -0
  980. /package/{agentic-flow/dist → dist}/router/test-integration.js +0 -0
  981. /package/{agentic-flow/dist → dist}/router/test-onnx-benchmark.js +0 -0
  982. /package/{agentic-flow/dist → dist}/router/test-onnx-integration.js +0 -0
  983. /package/{agentic-flow/dist → dist}/router/test-onnx-local.js +0 -0
  984. /package/{agentic-flow/dist → dist}/router/test-onnx.js +0 -0
  985. /package/{agentic-flow/dist → dist}/router/test-openrouter.js +0 -0
  986. /package/{agentic-flow/dist → dist}/router/test-phi4.js +0 -0
  987. /package/{agentic-flow/dist → dist}/router/types.js +0 -0
  988. /package/{agentic-flow/dist → dist}/swarm/index.js +0 -0
  989. /package/{agentic-flow/dist → dist}/swarm/quic-coordinator.js +0 -0
  990. /package/{agentic-flow/dist → dist}/swarm/transport-router.js +0 -0
  991. /package/{agentic-flow/dist → dist}/transport/index.js +0 -0
  992. /package/{agentic-flow/dist → dist}/transport/quic-handshake.js +0 -0
  993. /package/{agentic-flow/dist → dist}/transport/quic.js +0 -0
  994. /package/{agentic-flow/dist → dist}/utils/agentBoosterPreprocessor.js +0 -0
  995. /package/{agentic-flow/dist → dist}/utils/agentLoader.js +0 -0
  996. /package/{agentic-flow/dist → dist}/utils/agentdb-runtime-patch.js +0 -0
  997. /package/{agentic-flow/dist → dist}/utils/agentdbCommands.js +0 -0
  998. /package/{agentic-flow/dist → dist}/utils/logger.js +0 -0
  999. /package/{agentic-flow/dist → dist}/utils/math.js +0 -0
  1000. /package/{agentic-flow/dist → dist}/utils/mcpCommands.js +0 -0
  1001. /package/{agentic-flow/dist → dist}/utils/model-downloader.js +0 -0
  1002. /package/{agentic-flow/dist → dist}/utils/modelCapabilities.js +0 -0
  1003. /package/{agentic-flow/dist → dist}/utils/modelOptimizer.js +0 -0
  1004. /package/{agentic-flow/dist → dist}/utils/reasoningbankCommands.js +0 -0
  1005. /package/{agentic-flow/dist → dist}/utils/retry.js +0 -0
  1006. /package/{agentic-flow/docs → docs}/AGENTDB_TESTING.md +0 -0
  1007. /package/{agentic-flow/docs → docs}/INTEGRATION-COMPLETE.md +0 -0
  1008. /package/{agentic-flow/docs → docs}/QUIC_FINAL_STATUS.md +0 -0
  1009. /package/{agentic-flow/docs → docs}/README_QUIC_PHASE1.md +0 -0
  1010. /package/{agentic-flow/docs → docs}/TEST-V1.7.8.Dockerfile +0 -0
  1011. /package/{agentic-flow/docs → docs}/TEST-V1.7.9-NODE20.Dockerfile +0 -0
  1012. /package/{agentic-flow/docs → docs}/TEST-V1.7.9.Dockerfile +0 -0
  1013. /package/{agentic-flow/docs → docs}/architecture/FEDERATION-DATA-LIFECYCLE.md +0 -0
  1014. /package/{agentic-flow/docs → docs}/archived/COMPLETE_VALIDATION_SUMMARY.md +0 -0
  1015. /package/{agentic-flow/docs → docs}/archived/DOCKER_MCP_VALIDATION.md +0 -0
  1016. /package/{agentic-flow/docs → docs}/archived/DOCKER_OPENROUTER_VALIDATION.md +0 -0
  1017. /package/{agentic-flow/docs → docs}/archived/FASTMCP_COMPLETE.md +0 -0
  1018. /package/{agentic-flow/docs → docs}/archived/FASTMCP_INTEGRATION_STATUS.md +0 -0
  1019. /package/{agentic-flow/docs → docs}/archived/FINAL_SDK_VALIDATION.md +0 -0
  1020. /package/{agentic-flow/docs → docs}/archived/FINAL_SYSTEM_VALIDATION.md +0 -0
  1021. /package/{agentic-flow/docs → docs}/archived/FINAL_VALIDATION_SUMMARY.md +0 -0
  1022. /package/{agentic-flow/docs → docs}/archived/FIXES-APPLIED-STATUS.md +0 -0
  1023. /package/{agentic-flow/docs → docs}/archived/FLOW-NEXUS-COMPLETE.md +0 -0
  1024. /package/{agentic-flow/docs → docs}/archived/HOTFIX_1.1.7.md +0 -0
  1025. /package/{agentic-flow/docs → docs}/archived/INTEGRATION_CONFIRMED.md +0 -0
  1026. /package/{agentic-flow/docs → docs}/archived/MCP_CLI_TOOLS_VALIDATION.md +0 -0
  1027. /package/{agentic-flow/docs → docs}/archived/MCP_INTEGRATION_SUCCESS.md +0 -0
  1028. /package/{agentic-flow/docs → docs}/archived/MCP_PROXY_VALIDATION.md +0 -0
  1029. /package/{agentic-flow/docs → docs}/archived/MODEL_VALIDATION_REPORT.md +0 -0
  1030. /package/{agentic-flow/docs → docs}/archived/ONNX_ENV_VARS.md +0 -0
  1031. /package/{agentic-flow/docs → docs}/archived/ONNX_FINAL_REPORT.md +0 -0
  1032. /package/{agentic-flow/docs → docs}/archived/ONNX_IMPLEMENTATION_COMPLETE.md +0 -0
  1033. /package/{agentic-flow/docs → docs}/archived/ONNX_IMPLEMENTATION_SUMMARY.md +0 -0
  1034. /package/{agentic-flow/docs → docs}/archived/ONNX_INTEGRATION.md +0 -0
  1035. /package/{agentic-flow/docs → docs}/archived/ONNX_OPTIMIZATION_SUMMARY.md +0 -0
  1036. /package/{agentic-flow/docs → docs}/archived/ONNX_PHI4_RESEARCH.md +0 -0
  1037. /package/{agentic-flow/docs → docs}/archived/ONNX_RUNTIME_INTEGRATION_PLAN.md +0 -0
  1038. /package/{agentic-flow/docs → docs}/archived/ONNX_SUCCESS_REPORT.md +0 -0
  1039. /package/{agentic-flow/docs → docs}/archived/ONNX_VS_CLAUDE_QUALITY.md +0 -0
  1040. /package/{agentic-flow/docs → docs}/archived/OPENROUTER-FIX-VALIDATION.md +0 -0
  1041. /package/{agentic-flow/docs → docs}/archived/OPENROUTER-SUCCESS-REPORT.md +0 -0
  1042. /package/{agentic-flow/docs → docs}/archived/OPENROUTER_ISSUES_AND_FIXES.md +0 -0
  1043. /package/{agentic-flow/docs → docs}/archived/OPENROUTER_PROXY_COMPLETE.md +0 -0
  1044. /package/{agentic-flow/docs → docs}/archived/OPENROUTER_VALIDATION_COMPLETE.md +0 -0
  1045. /package/{agentic-flow/docs → docs}/archived/OPTIMIZATION_SUMMARY.md +0 -0
  1046. /package/{agentic-flow/docs → docs}/archived/PACKAGE-COMPLETE.md +0 -0
  1047. /package/{agentic-flow/docs → docs}/archived/PHI4_HYPEROPTIMIZATION_PLAN.md +0 -0
  1048. /package/{agentic-flow/docs → docs}/archived/PROVIDER_INSTRUCTION_OPTIMIZATION.md +0 -0
  1049. /package/{agentic-flow/docs → docs}/archived/PROXY_VALIDATION.md +0 -0
  1050. /package/{agentic-flow/docs → docs}/archived/README.md +0 -0
  1051. /package/{agentic-flow/docs → docs}/archived/README_SDK_VALIDATION.md +0 -0
  1052. /package/{agentic-flow/docs → docs}/archived/README_V1.1.11.md +0 -0
  1053. /package/{agentic-flow/docs → docs}/archived/RELEASE-NOTES-v1.1.13.md +0 -0
  1054. /package/{agentic-flow/docs → docs}/archived/RELEASE-SUMMARY-v1.1.14-beta.1.md +0 -0
  1055. /package/{agentic-flow/docs → docs}/archived/RESEARCH_COMPLETE.txt +0 -0
  1056. /package/{agentic-flow/docs → docs}/archived/ROUTER_VALIDATION.md +0 -0
  1057. /package/{agentic-flow/docs → docs}/archived/SDK-SETUP-COMPLETE.md +0 -0
  1058. /package/{agentic-flow/docs → docs}/archived/SDK_INTEGRATION_COMPLETE.md +0 -0
  1059. /package/{agentic-flow/docs → docs}/archived/TOOL_INSTRUCTION_ENHANCEMENT.md +0 -0
  1060. /package/{agentic-flow/docs → docs}/archived/V1.1.10_VALIDATION.md +0 -0
  1061. /package/{agentic-flow/docs → docs}/archived/V1.1.11_COMPLETE_VALIDATION.md +0 -0
  1062. /package/{agentic-flow/docs → docs}/archived/V1.1.11_MCP_PROXY_FIX.md +0 -0
  1063. /package/{agentic-flow/docs → docs}/archived/V1.1.14-BETA-READY.md +0 -0
  1064. /package/{agentic-flow/docs → docs}/archived/VALIDATION-RESULTS.md +0 -0
  1065. /package/{agentic-flow/docs → docs}/archived/VALIDATION_COMPLETE.md +0 -0
  1066. /package/{agentic-flow/docs → docs}/archived/VALIDATION_SUMMARY.md +0 -0
  1067. /package/{agentic-flow/docs → docs}/archived/claude-flow-integration.md +0 -0
  1068. /package/{agentic-flow/docs → docs}/archived/docker-cli-validation.md +0 -0
  1069. /package/{agentic-flow/docs → docs}/archived/docker-memory-coordination-status.md +0 -0
  1070. /package/{agentic-flow/docs → docs}/archived/mcp-validation-summary.md +0 -0
  1071. /package/{agentic-flow/docs → docs}/archived/quick-wins-validation.md +0 -0
  1072. /package/{agentic-flow/docs → docs}/benchmarks/optimization-guide.md +0 -0
  1073. /package/{agentic-flow/docs → docs}/benchmarks/quic-results.md +0 -0
  1074. /package/{agentic-flow/docs → docs}/federation/AGENT-DEBUG-STREAMING.md +0 -0
  1075. /package/{agentic-flow/docs → docs}/federation/DEBUG-STREAMING-COMPLETE.md +0 -0
  1076. /package/{agentic-flow/docs → docs}/federation/DEBUG-STREAMING.md +0 -0
  1077. /package/{agentic-flow/docs → docs}/federation/DEPLOYMENT-VALIDATION-SUCCESS.md +0 -0
  1078. /package/{agentic-flow/docs → docs}/federation/DOCKER-FEDERATION-DEEP-REVIEW.md +0 -0
  1079. /package/{agentic-flow/docs → docs}/integration-docs/AGENT-BOOSTER-INTEGRATION.md +0 -0
  1080. /package/{agentic-flow/docs → docs}/integration-docs/CLAUDE-FLOW-INTEGRATION-ANALYSIS.md +0 -0
  1081. /package/{agentic-flow/docs → docs}/integration-docs/CLI-INTEGRATION-COMPLETE.md +0 -0
  1082. /package/{agentic-flow/docs → docs}/integration-docs/IMPLEMENTATION_SUMMARY.md +0 -0
  1083. /package/{agentic-flow/docs → docs}/integration-docs/INTEGRATION-QUICK-SUMMARY.md +0 -0
  1084. /package/{agentic-flow/docs → docs}/integration-docs/INTEGRATION-STATUS-CORRECTED.md +0 -0
  1085. /package/{agentic-flow/docs → docs}/integration-docs/INTEGRATION_COMPLETE_SUMMARY.md +0 -0
  1086. /package/{agentic-flow/docs → docs}/integration-docs/QUIC-WASM-INTEGRATION.md +0 -0
  1087. /package/{agentic-flow/docs → docs}/integration-docs/README.md +0 -0
  1088. /package/{agentic-flow/docs → docs}/integration-docs/WASM_ESM_FIX.md +0 -0
  1089. /package/{agentic-flow/docs → docs}/integration-docs/WASM_INTEGRATION_COMPLETE.md +0 -0
  1090. /package/{agentic-flow/docs → docs}/integrations/CLAUDE_AGENTS_INTEGRATION.md +0 -0
  1091. /package/{agentic-flow/docs → docs}/integrations/CLAUDE_FLOW_INTEGRATION.md +0 -0
  1092. /package/{agentic-flow/docs → docs}/integrations/FASTMCP_CLI_INTEGRATION.md +0 -0
  1093. /package/{agentic-flow/docs → docs}/integrations/FLOW-NEXUS-INTEGRATION.md +0 -0
  1094. /package/{agentic-flow/docs → docs}/integrations/README.md +0 -0
  1095. /package/{agentic-flow/docs → docs}/integrations/fastmcp-implementation-plan.md +0 -0
  1096. /package/{agentic-flow/docs → docs}/integrations/fastmcp-poc-integration.md +0 -0
  1097. /package/{agentic-flow/docs → docs}/issues/ISSUE-SUPABASE-INTEGRATION.md +0 -0
  1098. /package/{agentic-flow/docs → docs}/mcp-validation/IMPLEMENTATION-SUMMARY.md +0 -0
  1099. /package/{agentic-flow/docs → docs}/mcp-validation/MCP-CLI-VALIDATION-REPORT.md +0 -0
  1100. /package/{agentic-flow/docs → docs}/mcp-validation/README.md +0 -0
  1101. /package/{agentic-flow/docs → docs}/mcp-validation/strange-loops-test.md +0 -0
  1102. /package/{agentic-flow/docs → docs}/plans/QUIC/BUILD_INSTRUCTIONS.md +0 -0
  1103. /package/{agentic-flow/docs → docs}/plans/QUIC/IMPLEMENTATION_STATUS.md +0 -0
  1104. /package/{agentic-flow/docs → docs}/plans/QUIC/QUIC-INTEGRATION-SUMMARY.md +0 -0
  1105. /package/{agentic-flow/docs → docs}/plans/QUIC/QUIC-INTEGRATION.md +0 -0
  1106. /package/{agentic-flow/docs → docs}/plans/QUIC/QUIC-README.md +0 -0
  1107. /package/{agentic-flow/docs → docs}/plans/QUIC/QUIC_IMPLEMENTATION_SUMMARY.md +0 -0
  1108. /package/{agentic-flow/docs → docs}/plans/QUIC/README-CONDENSED.md +0 -0
  1109. /package/{agentic-flow/docs → docs}/plans/QUIC/quic-research.md +0 -0
  1110. /package/{agentic-flow/docs → docs}/plans/QUIC/quic-tutorial.md +0 -0
  1111. /package/{agentic-flow/docs → docs}/plans/agent-booster/00-INDEX.md +0 -0
  1112. /package/{agentic-flow/docs → docs}/plans/agent-booster/00-OVERVIEW.md +0 -0
  1113. /package/{agentic-flow/docs → docs}/plans/agent-booster/01-ARCHITECTURE.md +0 -0
  1114. /package/{agentic-flow/docs → docs}/plans/agent-booster/02-INTEGRATION.md +0 -0
  1115. /package/{agentic-flow/docs → docs}/plans/agent-booster/03-BENCHMARKS.md +0 -0
  1116. /package/{agentic-flow/docs → docs}/plans/agent-booster/04-NPM-SDK.md +0 -0
  1117. /package/{agentic-flow/docs → docs}/plans/agent-booster/GITHUB-ISSUE.md +0 -0
  1118. /package/{agentic-flow/docs → docs}/plans/agent-booster/README.md +0 -0
  1119. /package/{agentic-flow/docs → docs}/plans/agent-booster-cli-integration.md +0 -0
  1120. /package/{agentic-flow/docs → docs}/plans/requesty/00-overview.md +0 -0
  1121. /package/{agentic-flow/docs → docs}/plans/requesty/01-api-research.md +0 -0
  1122. /package/{agentic-flow/docs → docs}/plans/requesty/02-architecture.md +0 -0
  1123. /package/{agentic-flow/docs → docs}/plans/requesty/03-implementation-phases.md +0 -0
  1124. /package/{agentic-flow/docs → docs}/plans/requesty/04-testing-strategy.md +0 -0
  1125. /package/{agentic-flow/docs → docs}/plans/requesty/05-migration-guide.md +0 -0
  1126. /package/{agentic-flow/docs → docs}/plans/requesty/README.md +0 -0
  1127. /package/{agentic-flow/docs → docs}/quantum-goap/DEPENDENCY_GRAPH.mermaid +0 -0
  1128. /package/{agentic-flow/docs → docs}/quantum-goap/EXECUTION_SUMMARY.md +0 -0
  1129. /package/{agentic-flow/docs → docs}/quantum-goap/GOAP_IMPLEMENTATION_PLAN.md +0 -0
  1130. /package/{agentic-flow/docs → docs}/quantum-goap/QUICK_START.md +0 -0
  1131. /package/{agentic-flow/docs → docs}/quantum-research/QUANTUM_RESEARCH_LITERATURE_REVIEW.md +0 -0
  1132. /package/{agentic-flow/docs → docs}/quantum-research/README.md +0 -0
  1133. /package/{agentic-flow/docs → docs}/quic/FINAL-VALIDATION.md +0 -0
  1134. /package/{agentic-flow/docs → docs}/quic/IMPLEMENTATION-COMPLETE-SUMMARY.md +0 -0
  1135. /package/{agentic-flow/docs → docs}/quic/PERFORMANCE-VALIDATION.md +0 -0
  1136. /package/{agentic-flow/docs → docs}/quic/QUIC-STATUS-OLD.md +0 -0
  1137. /package/{agentic-flow/docs → docs}/quic/QUIC-STATUS.md +0 -0
  1138. /package/{agentic-flow/docs → docs}/quic/QUIC-VALIDATION-REPORT.md +0 -0
  1139. /package/{agentic-flow/docs → docs}/quic/WASM-INTEGRATION-COMPLETE.md +0 -0
  1140. /package/{agentic-flow/docs → docs}/reasoningbank/MEMORY_VALIDATION_REPORT.md +0 -0
  1141. /package/{agentic-flow/docs → docs}/reasoningbank/README.md +0 -0
  1142. /package/{agentic-flow/docs → docs}/reasoningbank/REASONING-AGENTS.md +0 -0
  1143. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK-BENCHMARK-RESULTS.md +0 -0
  1144. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK-BENCHMARK.md +0 -0
  1145. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK-CLI-INTEGRATION.md +0 -0
  1146. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK-DEMO.md +0 -0
  1147. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK-VALIDATION.md +0 -0
  1148. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK_ARCHITECTURE.md +0 -0
  1149. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK_BACKENDS.md +0 -0
  1150. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK_FIXES.md +0 -0
  1151. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK_IMPLEMENTATION_STATUS.md +0 -0
  1152. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK_INTEGRATION_PLAN.md +0 -0
  1153. /package/{agentic-flow/docs → docs}/reasoningbank/REASONINGBANK_INVESTIGATION.md +0 -0
  1154. /package/{agentic-flow/docs → docs}/releases/GITHUB-ISSUE-ADDENDUM-v1.4.6.md +0 -0
  1155. /package/{agentic-flow/docs → docs}/releases/GITHUB-ISSUE-REASONINGBANK-BENCHMARK.md +0 -0
  1156. /package/{agentic-flow/docs → docs}/releases/GITHUB-ISSUE-v1.4.6.md +0 -0
  1157. /package/{agentic-flow/docs → docs}/releases/GITHUB-ISSUE-v1.5.0.md +0 -0
  1158. /package/{agentic-flow/docs → docs}/releases/HOTFIX-v1.2.1.md +0 -0
  1159. /package/{agentic-flow/docs → docs}/releases/NPM-PUBLISH-GUIDE-v1.2.0.md +0 -0
  1160. /package/{agentic-flow/docs → docs}/releases/PUBLISH-COMPLETE-v1.2.0.md +0 -0
  1161. /package/{agentic-flow/docs → docs}/releases/README.md +0 -0
  1162. /package/{agentic-flow/docs → docs}/releases/RELEASE-v1.2.0.md +0 -0
  1163. /package/{agentic-flow/docs → docs}/releases/RELEASE-v1.8.13.md +0 -0
  1164. /package/{agentic-flow/docs → docs}/releases/v1.4.6-reasoningbank-release.md +0 -0
  1165. /package/{agentic-flow/docs → docs}/releases/v1.4.7-bugfix.md +0 -0
  1166. /package/{agentic-flow/docs → docs}/releases/v1.5.14-QUIC-TRANSPORT.md +0 -0
  1167. /package/{agentic-flow/docs → docs}/router/README.md +0 -0
  1168. /package/{agentic-flow/docs → docs}/router/ROUTER_CONFIG_REFERENCE.md +0 -0
  1169. /package/{agentic-flow/docs → docs}/router/ROUTER_USER_GUIDE.md +0 -0
  1170. /package/{agentic-flow/docs → docs}/router/TOP20_MODELS_MATRIX.md +0 -0
  1171. /package/{agentic-flow/docs → docs}/supabase/IMPLEMENTATION-SUMMARY.md +0 -0
  1172. /package/{agentic-flow/docs → docs}/supabase/INDEX.md +0 -0
  1173. /package/{agentic-flow/docs → docs}/supabase/QUICKSTART.md +0 -0
  1174. /package/{agentic-flow/docs → docs}/supabase/README.md +0 -0
  1175. /package/{agentic-flow/docs → docs}/supabase/SUPABASE-REALTIME-FEDERATION.md +0 -0
  1176. /package/{agentic-flow/docs → docs}/supabase/TEST-REPORT.md +0 -0
  1177. /package/{agentic-flow/docs → docs}/supabase/migrations/001_create_federation_tables.sql +0 -0
  1178. /package/{agentic-flow/docs → docs}/testing/AGENT-SYSTEM-VALIDATION.md +0 -0
  1179. /package/{agentic-flow/docs → docs}/testing/FINAL-TESTING-SUMMARY.md +0 -0
  1180. /package/{agentic-flow/docs → docs}/testing/README.md +0 -0
  1181. /package/{agentic-flow/docs → docs}/testing/REGRESSION-TEST-RESULTS.md +0 -0
  1182. /package/{agentic-flow/docs → docs}/testing/STREAMING-AND-MCP-VALIDATION.md +0 -0
  1183. /package/{agentic-flow/docs → docs}/v1.7.1-QUICK-START.md +0 -0
  1184. /package/{agentic-flow/docs → docs}/validation/README.md +0 -0
  1185. /package/{agentic-flow/docs → docs}/validation/reports/REGRESSION-TEST-V1.8.11.md +0 -0
  1186. /package/{agentic-flow/docs → docs}/validation-reports/BENCHMARK_AND_OPTIMIZATION_REPORT.md +0 -0
  1187. /package/{agentic-flow/docs → docs}/validation-reports/DOCKER_VALIDATION_RESULTS.md +0 -0
  1188. /package/{agentic-flow/docs → docs}/validation-reports/NO_REGRESSIONS_CONFIRMED.md +0 -0
  1189. /package/{agentic-flow/docs → docs}/validation-reports/NPM-PACKAGE-ANALYSIS-FINAL.md +0 -0
  1190. /package/{agentic-flow/docs → docs}/validation-reports/README.md +0 -0
  1191. /package/{agentic-flow/docs → docs}/validation-reports/V2.7.0-ALPHA.10_FINAL_VALIDATION.md +0 -0
  1192. /package/{agentic-flow/docs → docs}/validation-reports/V2.7.0-ALPHA.9_VALIDATION.md +0 -0
  1193. /package/{agentic-flow/docs → docs}/validation-reports/v1.6.0-QUIC-CLI-VALIDATION.md +0 -0
  1194. /package/{agentic-flow/docs → docs}/validation-reports/v1.6.1-NPM-PUBLISH-VALIDATION.md +0 -0
  1195. /package/{agentic-flow/docs → docs}/version-releases/PUBLICATION_REPORT_v1.5.11.md +0 -0
  1196. /package/{agentic-flow/docs → docs}/version-releases/README.md +0 -0
  1197. /package/{agentic-flow/docs → docs}/version-releases/v1.5.9-DOCKER-VERIFICATION.md +0 -0
  1198. /package/{agentic-flow/docs → docs}/version-releases/v1.5.9-RELEASE-SUMMARY.md +0 -0
  1199. /package/{agentic-flow/scripts → scripts}/build.sh +0 -0
  1200. /package/{agentic-flow/scripts → scripts}/claude-code +0 -0
  1201. /package/{agentic-flow/scripts → scripts}/claude-flow +0 -0
  1202. /package/{agentic-flow/scripts → scripts}/claude-flow.bat +0 -0
  1203. /package/{agentic-flow/scripts → scripts}/claude-flow.ps1 +0 -0
  1204. /package/{agentic-flow/scripts → scripts}/postinstall.js +0 -0
  1205. /package/{agentic-flow/scripts → scripts}/run-validation.sh +0 -0
  1206. /package/{agentic-flow/scripts → scripts}/test-agentdb.sh +0 -0
  1207. /package/{agentic-flow/scripts → scripts}/test-all-commands.sh +0 -0
  1208. /package/{agentic-flow/scripts → scripts}/test-claude-flow-sdk.sh +0 -0
  1209. /package/{agentic-flow/scripts → scripts}/test-fastmcp-docker.sh +0 -0
  1210. /package/{agentic-flow/scripts → scripts}/test-fastmcp-poc.sh +0 -0
  1211. /package/{agentic-flow/scripts → scripts}/test-functionality.sh +0 -0
  1212. /package/{agentic-flow/scripts → scripts}/test-onnx-docker.sh +0 -0
  1213. /package/{agentic-flow/scripts → scripts}/test-router-docker.sh +0 -0
  1214. /package/{agentic-flow/scripts → scripts}/validate-mcp-cli-tools.sh +0 -0
  1215. /package/{agentic-flow/scripts → scripts}/validate-providers.sh +0 -0
  1216. /package/{agentic-flow/wasm → wasm}/quic/README.md +0 -0
  1217. /package/{agentic-flow/wasm → wasm}/quic/agentic_flow_quic.js +0 -0
  1218. /package/{agentic-flow/wasm → wasm}/quic/agentic_flow_quic_bg.wasm +0 -0
  1219. /package/{agentic-flow/wasm → wasm}/quic/package.json +0 -0
  1220. /package/{agentic-flow/wasm → wasm}/reasoningbank/package.json +0 -0
  1221. /package/{agentic-flow/wasm → wasm}/reasoningbank/reasoningbank_wasm.js +0 -0
  1222. /package/{agentic-flow/wasm → wasm}/reasoningbank/reasoningbank_wasm_bg.js +0 -0
  1223. /package/{agentic-flow/wasm → wasm}/reasoningbank/reasoningbank_wasm_bg.wasm +0 -0
@@ -1,1602 +0,0 @@
1
- # MCP Tools Troubleshooting Guide
2
-
3
- **Version:** 1.0.0
4
- **Last Updated:** 2025-10-22
5
- **Coverage:** 4 MCP servers, 233+ tools
6
-
7
- ---
8
-
9
- ## Table of Contents
10
-
11
- 1. [Quick Diagnostics](#quick-diagnostics)
12
- 2. [Common Issues Matrix](#common-issues-matrix)
13
- 3. [Per-Server Troubleshooting](#per-server-troubleshooting)
14
- - [Claude Flow Issues](#claude-flow-issues)
15
- - [AgentDB Issues](#agentdb-issues)
16
- - [Flow Nexus Issues](#flow-nexus-issues)
17
- - [Agentic Payments Issues](#agentic-payments-issues)
18
- 4. [Diagnostic Commands](#diagnostic-commands)
19
- 5. [Debug Mode](#debug-mode)
20
- 6. [Error Code Reference](#error-code-reference)
21
- 7. [Getting Help](#getting-help)
22
- 8. [FAQ](#faq)
23
-
24
- ---
25
-
26
- ## Quick Diagnostics
27
-
28
- **First Steps (run these in order):**
29
-
30
- ```bash
31
- # 1. Check MCP server installation
32
- claude mcp list
33
-
34
- # 2. Verify Claude Code version
35
- claude --version
36
-
37
- # 3. Test basic connectivity
38
- npx claude-flow@alpha --version
39
-
40
- # 4. Check environment variables
41
- env | grep -E "(ANTHROPIC|OPENROUTER|GOOGLE)"
42
- ```
43
-
44
- **Expected output:**
45
- ```
46
- claude-flow (running)
47
- agentic-flow (optional)
48
- flow-nexus (optional)
49
- ```
50
-
51
- If any server is missing or stopped, see [MCP Server Not Found](#1-mcp-server-not-found).
52
-
53
- ---
54
-
55
- ## Common Issues Matrix
56
-
57
- | Issue | Symptoms | Cause | Quick Fix | Detailed Section |
58
- |-------|----------|-------|-----------|------------------|
59
- | **MCP server not found** | "Server 'X' not available" | Not installed/started | `claude mcp add <server>` | [§3.1](#31-server-not-installed) |
60
- | **Authentication failed** | "AUTH_REQUIRED" error | No login session | Run login command | [§3.3](#33-flow-nexus-authentication) |
61
- | **Tool not available** | "Unknown tool" error | Server not started | Restart MCP server | [§3.1](#31-server-not-installed) |
62
- | **Rate limit exceeded** | "RATE_LIMITED" error | Too many requests | Wait or upgrade tier | [§3.3](#flow-nexus-rate-limits) |
63
- | **Invalid parameters** | "INVALID_PARAMS" error | Wrong param types | Check tool docs | [§6](#error-code-reference) |
64
- | **Connection timeout** | No response after 30s | Network/server issue | Check network, restart | [§4.3](#43-network-diagnostics) |
65
- | **Out of credits** | "INSUFFICIENT_CREDITS" | Low balance | Add credits | [§3.3](#flow-nexus-credit-issues) |
66
- | **Keypair invalid** | "SIGNATURE_INVALID" error | Wrong private key | Regenerate keypair | [§3.4](#agentic-payments-keypair-issues) |
67
- | **Database locked** | "SQLITE_BUSY" error | Concurrent access | Wait, retry, or restart | [§3.2](#agentdb-database-issues) |
68
- | **Sandbox timeout** | Sandbox unresponsive | Long-running code | Increase timeout param | [§3.3](#flow-nexus-sandbox-issues) |
69
-
70
- ---
71
-
72
- ## Per-Server Troubleshooting
73
-
74
- ### 3.1 Claude Flow Issues
75
-
76
- **Server installation and basic operations.**
77
-
78
- #### Server Not Installed
79
-
80
- **Symptoms:**
81
- ```
82
- Error: MCP server 'claude-flow' not found
83
- ```
84
-
85
- **Solutions:**
86
-
87
- 1. **Install Claude Flow:**
88
- ```bash
89
- # Add MCP server
90
- claude mcp add claude-flow npx claude-flow@alpha mcp start
91
-
92
- # Verify installation
93
- claude mcp list
94
- ```
95
-
96
- 2. **Restart Claude Code:**
97
- ```bash
98
- # Close and reopen Claude Code
99
- # Or restart the terminal
100
- ```
101
-
102
- 3. **Check npm installation:**
103
- ```bash
104
- # Verify claude-flow is installed
105
- npm list -g | grep claude-flow
106
-
107
- # If missing, install globally
108
- npm install -g @ruvnet/claude-flow@alpha
109
- ```
110
-
111
- #### Server Not Starting
112
-
113
- **Symptoms:**
114
- ```
115
- MCP server 'claude-flow' failed to start
116
- Timeout waiting for server initialization
117
- ```
118
-
119
- **Solutions:**
120
-
121
- 1. **Check Node.js version:**
122
- ```bash
123
- node --version # Requires v18+ or v20+
124
- ```
125
-
126
- 2. **Clear npm cache:**
127
- ```bash
128
- npm cache clean --force
129
- npm install -g @ruvnet/claude-flow@alpha
130
- ```
131
-
132
- 3. **Check for port conflicts:**
133
- ```bash
134
- # Claude Flow uses ephemeral ports
135
- # No manual port configuration needed
136
- ```
137
-
138
- 4. **View detailed logs:**
139
- ```bash
140
- # Enable debug mode (see §5)
141
- DEBUG=claude-flow:* npx claude-flow@alpha mcp start
142
- ```
143
-
144
- #### Swarm Initialization Failures
145
-
146
- **Symptoms:**
147
- ```javascript
148
- // Returns error
149
- mcp__claude-flow__swarm_init({ topology: 'mesh' });
150
- // Error: Failed to initialize swarm
151
- ```
152
-
153
- **Solutions:**
154
-
155
- 1. **Check topology parameter:**
156
- ```javascript
157
- // ✅ Valid topologies
158
- mcp__claude-flow__swarm_init({ topology: 'mesh' });
159
- mcp__claude-flow__swarm_init({ topology: 'hierarchical' });
160
- mcp__claude-flow__swarm_init({ topology: 'ring' });
161
- mcp__claude-flow__swarm_init({ topology: 'star' });
162
-
163
- // ❌ Invalid
164
- mcp__claude-flow__swarm_init({ topology: 'custom' }); // Not supported
165
- ```
166
-
167
- 2. **Check maxAgents limit:**
168
- ```javascript
169
- // ✅ Within limits
170
- mcp__claude-flow__swarm_init({
171
- topology: 'mesh',
172
- maxAgents: 8 // Default: 8, Max: 100
173
- });
174
-
175
- // ❌ Exceeds limit
176
- mcp__claude-flow__swarm_init({
177
- topology: 'mesh',
178
- maxAgents: 200 // Error: exceeds max
179
- });
180
- ```
181
-
182
- 3. **Destroy existing swarm:**
183
- ```javascript
184
- // Get swarm ID
185
- const status = mcp__claude-flow__swarm_status();
186
-
187
- // Destroy if exists
188
- if (status.swarmId) {
189
- mcp__claude-flow__swarm_destroy({
190
- swarmId: status.swarmId
191
- });
192
- }
193
-
194
- // Retry initialization
195
- mcp__claude-flow__swarm_init({ topology: 'mesh' });
196
- ```
197
-
198
- #### Memory Operations Failing
199
-
200
- **Symptoms:**
201
- ```javascript
202
- // No error, but memory not persisting
203
- mcp__claude-flow__memory_usage({
204
- action: 'store',
205
- key: 'test',
206
- value: 'data'
207
- });
208
-
209
- // Returns empty
210
- mcp__claude-flow__memory_usage({
211
- action: 'retrieve',
212
- key: 'test'
213
- });
214
- ```
215
-
216
- **Solutions:**
217
-
218
- 1. **Check action parameter:**
219
- ```javascript
220
- // ✅ Valid actions
221
- 'store', 'retrieve', 'list', 'delete', 'search'
222
-
223
- // ❌ Invalid
224
- 'save', 'get', 'find' // Use correct action names
225
- ```
226
-
227
- 2. **Verify namespace:**
228
- ```javascript
229
- // Namespaces are isolated
230
- mcp__claude-flow__memory_usage({
231
- action: 'store',
232
- key: 'test',
233
- namespace: 'project-a', // Stored in namespace
234
- value: 'data'
235
- });
236
-
237
- // Won't find it in default namespace
238
- mcp__claude-flow__memory_usage({
239
- action: 'retrieve',
240
- key: 'test' // Uses 'default' namespace
241
- });
242
-
243
- // ✅ Correct retrieval
244
- mcp__claude-flow__memory_usage({
245
- action: 'retrieve',
246
- key: 'test',
247
- namespace: 'project-a' // Match the namespace
248
- });
249
- ```
250
-
251
- 3. **Check value serialization:**
252
- ```javascript
253
- // ✅ Store objects as JSON strings
254
- mcp__claude-flow__memory_usage({
255
- action: 'store',
256
- key: 'config',
257
- value: JSON.stringify({ setting: 'value' })
258
- });
259
-
260
- // ✅ Retrieve and parse
261
- const result = mcp__claude-flow__memory_usage({
262
- action: 'retrieve',
263
- key: 'config'
264
- });
265
- const config = JSON.parse(result.value);
266
- ```
267
-
268
- ---
269
-
270
- ### 3.2 AgentDB Issues
271
-
272
- **Agent memory, learning, and database operations.**
273
-
274
- #### Database Initialization
275
-
276
- **Symptoms:**
277
- ```bash
278
- Error: AgentDB not initialized
279
- SQLITE_CANTOPEN: unable to open database file
280
- ```
281
-
282
- **Solutions:**
283
-
284
- 1. **Initialize database:**
285
- ```bash
286
- # Create .agentdb directory
287
- mkdir -p .agentdb
288
-
289
- # Initialize with CLI
290
- npx agentdb init
291
-
292
- # Or set environment variable
293
- export AGENTDB_PATH="$(pwd)/.agentdb"
294
- ```
295
-
296
- 2. **Check permissions:**
297
- ```bash
298
- # Verify write permissions
299
- ls -la .agentdb/
300
-
301
- # Fix permissions if needed
302
- chmod 755 .agentdb
303
- chmod 644 .agentdb/*.db
304
- ```
305
-
306
- 3. **Check disk space:**
307
- ```bash
308
- df -h .
309
- # Ensure at least 100MB free
310
- ```
311
-
312
- #### Database Locked
313
-
314
- **Symptoms:**
315
- ```
316
- SQLITE_BUSY: database is locked
317
- Error: Cannot acquire lock after 5 seconds
318
- ```
319
-
320
- **Solutions:**
321
-
322
- 1. **Close other connections:**
323
- ```bash
324
- # Find processes using AgentDB
325
- lsof .agentdb/*.db
326
-
327
- # Kill if necessary (use with caution)
328
- kill <PID>
329
- ```
330
-
331
- 2. **Wait and retry:**
332
- ```javascript
333
- // Implement retry logic
334
- async function retryQuery(fn, retries = 3) {
335
- for (let i = 0; i < retries; i++) {
336
- try {
337
- return await fn();
338
- } catch (error) {
339
- if (error.code === 'SQLITE_BUSY' && i < retries - 1) {
340
- await new Promise(resolve => setTimeout(resolve, 1000 * (i + 1)));
341
- continue;
342
- }
343
- throw error;
344
- }
345
- }
346
- }
347
-
348
- // Usage
349
- await retryQuery(() =>
350
- mcp__agentdb__causal_query({ limit: 10 })
351
- );
352
- ```
353
-
354
- 3. **Enable WAL mode (if using CLI):**
355
- ```bash
356
- # Write-Ahead Logging for better concurrency
357
- npx agentdb config set wal_mode=ON
358
- ```
359
-
360
- #### Causal Memory Issues
361
-
362
- **Symptoms:**
363
- ```javascript
364
- // Adding edge fails
365
- mcp__agentdb__causal_add_edge({
366
- from: 'event1',
367
- to: 'event2',
368
- metadata: {}
369
- });
370
- // Error: Invalid edge data
371
- ```
372
-
373
- **Solutions:**
374
-
375
- 1. **Validate edge parameters:**
376
- ```javascript
377
- // ✅ Valid edge
378
- mcp__agentdb__causal_add_edge({
379
- from: 'user_login', // Source event
380
- to: 'load_dashboard', // Target event
381
- relation: 'causes', // Relationship type
382
- confidence: 0.95, // Optional: 0-1
383
- metadata: { // Optional
384
- latency_ms: 120,
385
- user_id: 'abc123'
386
- }
387
- });
388
-
389
- // ❌ Invalid
390
- mcp__agentdb__causal_add_edge({
391
- from: '', // Empty string not allowed
392
- to: null, // Null not allowed
393
- confidence: 1.5 // Must be 0-1
394
- });
395
- ```
396
-
397
- 2. **Check for circular dependencies:**
398
- ```javascript
399
- // Detect cycles
400
- const cycles = mcp__agentdb__causal_detect_cycles();
401
-
402
- if (cycles.length > 0) {
403
- console.log('Circular dependencies found:', cycles);
404
- // Remove or restructure edges
405
- }
406
- ```
407
-
408
- 3. **Query before adding:**
409
- ```javascript
410
- // Check if edge already exists
411
- const existing = mcp__agentdb__causal_query({
412
- from: 'event1',
413
- to: 'event2',
414
- limit: 1
415
- });
416
-
417
- if (!existing.edges || existing.edges.length === 0) {
418
- mcp__agentdb__causal_add_edge({ ... });
419
- }
420
- ```
421
-
422
- #### Reflexion Memory Issues
423
-
424
- **Symptoms:**
425
- ```javascript
426
- // Self-critique not working
427
- mcp__agentdb__reflexion_add_trajectory({
428
- task: 'solve_problem',
429
- actions: [...],
430
- outcome: 'failed'
431
- });
432
- // No error, but no learning improvement
433
- ```
434
-
435
- **Solutions:**
436
-
437
- 1. **Provide detailed trajectory:**
438
- ```javascript
439
- // ✅ Complete trajectory with context
440
- mcp__agentdb__reflexion_add_trajectory({
441
- task: 'implement_authentication',
442
- actions: [
443
- { step: 1, action: 'research_patterns', duration_ms: 5000 },
444
- { step: 2, action: 'write_code', duration_ms: 15000 },
445
- { step: 3, action: 'test_implementation', duration_ms: 8000 }
446
- ],
447
- outcome: 'success', // 'success' | 'failed' | 'partial'
448
- reflection: 'Should have written tests first',
449
- learned_patterns: ['tdd', 'auth_best_practices'],
450
- metadata: {
451
- complexity: 'medium',
452
- confidence: 0.8
453
- }
454
- });
455
- ```
456
-
457
- 2. **Query learning history:**
458
- ```javascript
459
- // Check what patterns were learned
460
- const learnings = mcp__agentdb__reflexion_query({
461
- task: 'implement_authentication',
462
- outcome: 'success',
463
- limit: 10
464
- });
465
-
466
- console.log('Learned from past:', learnings);
467
- ```
468
-
469
- 3. **Run nightly learner:**
470
- ```javascript
471
- // Discover patterns from trajectories
472
- const patterns = mcp__agentdb__nightly_discover_patterns({
473
- min_frequency: 3, // Minimum occurrences
474
- min_confidence: 0.7, // Minimum confidence
475
- time_window_hours: 24 // Look back period
476
- });
477
-
478
- console.log('Discovered patterns:', patterns);
479
- ```
480
-
481
- #### Skill Library Issues
482
-
483
- **Symptoms:**
484
- ```javascript
485
- // Skill not found
486
- mcp__agentdb__skill_retrieve({ skill_id: 'my-skill' });
487
- // Error: Skill not found
488
- ```
489
-
490
- **Solutions:**
491
-
492
- 1. **List available skills:**
493
- ```javascript
494
- // See all stored skills
495
- const skills = mcp__agentdb__skill_list({
496
- category: 'all',
497
- limit: 100
498
- });
499
-
500
- console.log('Available skills:', skills);
501
- ```
502
-
503
- 2. **Store skill with complete metadata:**
504
- ```javascript
505
- // ✅ Properly formatted skill
506
- mcp__agentdb__skill_store({
507
- skill_id: 'authentication_handler',
508
- name: 'User Authentication Handler',
509
- description: 'Secure user login with JWT',
510
- code: `
511
- async function authenticate(credentials) {
512
- // Implementation
513
- }
514
- `,
515
- category: 'security',
516
- tags: ['auth', 'jwt', 'security'],
517
- usage_count: 0,
518
- success_rate: 0.0,
519
- metadata: {
520
- language: 'javascript',
521
- dependencies: ['jsonwebtoken', 'bcrypt'],
522
- author: 'system'
523
- }
524
- });
525
- ```
526
-
527
- 3. **Update usage metrics:**
528
- ```javascript
529
- // Track skill performance
530
- mcp__agentdb__skill_update_metrics({
531
- skill_id: 'authentication_handler',
532
- increment_usage: true,
533
- success: true, // or false if failed
534
- execution_time_ms: 150
535
- });
536
- ```
537
-
538
- ---
539
-
540
- ### 3.3 Flow Nexus Issues
541
-
542
- **Cloud execution, authentication, and sandbox management.**
543
-
544
- #### Flow Nexus Authentication
545
-
546
- **Symptoms:**
547
- ```javascript
548
- mcp__flow-nexus__sandbox_create({ template: 'node' });
549
- // Error: AUTH_REQUIRED - Please login first
550
- ```
551
-
552
- **Solutions:**
553
-
554
- 1. **Register (first-time users):**
555
- ```javascript
556
- // One-time registration
557
- mcp__flow-nexus__user_register({
558
- email: 'user@example.com',
559
- password: 'secure-password-123',
560
- full_name: 'John Doe' // Optional
561
- });
562
-
563
- // Check email for verification link
564
- ```
565
-
566
- 2. **Verify email:**
567
- ```javascript
568
- // Click link in email, or use token
569
- mcp__flow-nexus__user_verify_email({
570
- token: 'verification-token-from-email'
571
- });
572
- ```
573
-
574
- 3. **Login (each session):**
575
- ```javascript
576
- // Login after verification
577
- mcp__flow-nexus__user_login({
578
- email: 'user@example.com',
579
- password: 'secure-password-123'
580
- });
581
-
582
- // Session token is stored automatically
583
- ```
584
-
585
- 4. **Check authentication status:**
586
- ```javascript
587
- const status = mcp__flow-nexus__auth_status({
588
- detailed: true
589
- });
590
-
591
- console.log('Authenticated:', status.authenticated);
592
- console.log('User ID:', status.user_id);
593
- console.log('Tier:', status.tier);
594
- ```
595
-
596
- #### Flow Nexus Rate Limits
597
-
598
- **Symptoms:**
599
- ```javascript
600
- // After many requests
601
- mcp__flow-nexus__sandbox_create({ template: 'node' });
602
- // Error: RATE_LIMITED - Too many requests
603
- // { retry_after_ms: 60000 }
604
- ```
605
-
606
- **Solutions:**
607
-
608
- 1. **Implement retry logic:**
609
- ```javascript
610
- async function retryWithBackoff(fn, maxRetries = 3) {
611
- for (let i = 0; i < maxRetries; i++) {
612
- try {
613
- return await fn();
614
- } catch (error) {
615
- if (error.code === 'RATE_LIMITED') {
616
- const delay = error.details?.retry_after_ms || 1000 * (i + 1);
617
- console.log(`Rate limited, waiting ${delay}ms...`);
618
- await new Promise(resolve => setTimeout(resolve, delay));
619
- continue;
620
- }
621
- throw error;
622
- }
623
- }
624
- }
625
-
626
- // Usage
627
- await retryWithBackoff(() =>
628
- mcp__flow-nexus__sandbox_create({ template: 'node' })
629
- );
630
- ```
631
-
632
- 2. **Check current limits:**
633
- ```javascript
634
- const stats = mcp__flow-nexus__user_stats({
635
- user_id: 'your-user-id'
636
- });
637
-
638
- console.log('Requests this hour:', stats.requests_this_hour);
639
- console.log('Limit:', stats.rate_limit);
640
- console.log('Resets at:', stats.rate_limit_reset);
641
- ```
642
-
643
- 3. **Upgrade tier:**
644
- ```javascript
645
- // Upgrade to pro tier (higher limits)
646
- mcp__flow-nexus__user_upgrade({
647
- user_id: 'your-user-id',
648
- tier: 'pro' // or 'enterprise'
649
- });
650
- ```
651
-
652
- 4. **Batch operations:**
653
- ```javascript
654
- // ❌ INEFFICIENT: Create sandbox per task
655
- for (const task of tasks) {
656
- const sandbox = mcp__flow-nexus__sandbox_create({ ... });
657
- mcp__flow-nexus__sandbox_execute({ ... });
658
- mcp__flow-nexus__sandbox_delete({ ... });
659
- }
660
-
661
- // ✅ EFFICIENT: Reuse sandbox
662
- const sandbox = mcp__flow-nexus__sandbox_create({ template: 'node' });
663
- for (const task of tasks) {
664
- mcp__flow-nexus__sandbox_execute({
665
- sandbox_id: sandbox.data.sandbox_id,
666
- code: task.code
667
- });
668
- }
669
- mcp__flow-nexus__sandbox_delete({ sandbox_id: sandbox.data.sandbox_id });
670
- ```
671
-
672
- #### Flow Nexus Credit Issues
673
-
674
- **Symptoms:**
675
- ```javascript
676
- mcp__flow-nexus__neural_train({ config: {...}, tier: 'large' });
677
- // Error: INSUFFICIENT_CREDITS - Balance too low
678
- ```
679
-
680
- **Solutions:**
681
-
682
- 1. **Check balance:**
683
- ```javascript
684
- const balance = mcp__flow-nexus__check_balance();
685
-
686
- console.log('Current balance:', balance.credits);
687
- console.log('Reserved:', balance.reserved_credits);
688
- console.log('Available:', balance.available_credits);
689
- ```
690
-
691
- 2. **Add credits:**
692
- ```javascript
693
- // Create payment link
694
- const payment = mcp__flow-nexus__create_payment_link({
695
- amount: 50.00 // $50 USD (minimum $10)
696
- });
697
-
698
- console.log('Payment URL:', payment.checkout_url);
699
- // Open URL in browser to complete payment
700
- ```
701
-
702
- 3. **Configure auto-refill:**
703
- ```javascript
704
- // Auto-add credits when low
705
- mcp__flow-nexus__configure_auto_refill({
706
- enabled: true,
707
- threshold: 10, // Refill when below 10 credits
708
- amount: 25.00 // Add $25 each time
709
- });
710
- ```
711
-
712
- 4. **Check transaction history:**
713
- ```javascript
714
- const history = mcp__flow-nexus__get_payment_history({
715
- limit: 10
716
- });
717
-
718
- console.log('Recent transactions:', history);
719
- ```
720
-
721
- #### Flow Nexus Sandbox Issues
722
-
723
- **Symptoms:**
724
- ```javascript
725
- // Sandbox creation hangs
726
- mcp__flow-nexus__sandbox_create({ template: 'node' });
727
- // ... no response after 60 seconds
728
- ```
729
-
730
- **Solutions:**
731
-
732
- 1. **Increase timeout:**
733
- ```javascript
734
- // Default timeout is 3600s (1 hour)
735
- mcp__flow-nexus__sandbox_create({
736
- template: 'node',
737
- timeout: 7200 // 2 hours
738
- });
739
- ```
740
-
741
- 2. **Check sandbox status:**
742
- ```javascript
743
- // List all sandboxes
744
- const sandboxes = mcp__flow-nexus__sandbox_list({
745
- status: 'all' // 'running' | 'stopped' | 'all'
746
- });
747
-
748
- console.log('Active sandboxes:', sandboxes);
749
-
750
- // Get specific sandbox
751
- const status = mcp__flow-nexus__sandbox_status({
752
- sandbox_id: 'sandbox-abc123'
753
- });
754
-
755
- console.log('Status:', status.state);
756
- ```
757
-
758
- 3. **Delete stuck sandboxes:**
759
- ```javascript
760
- // Force delete unresponsive sandbox
761
- mcp__flow-nexus__sandbox_delete({
762
- sandbox_id: 'sandbox-abc123'
763
- });
764
- ```
765
-
766
- 4. **Use lighter templates:**
767
- ```javascript
768
- // ❌ Heavy template (slow start)
769
- mcp__flow-nexus__sandbox_create({ template: 'nextjs' });
770
-
771
- // ✅ Light template (fast start)
772
- mcp__flow-nexus__sandbox_create({ template: 'base' });
773
- // Then install only what you need
774
- ```
775
-
776
- 5. **Check sandbox logs:**
777
- ```javascript
778
- const logs = mcp__flow-nexus__sandbox_logs({
779
- sandbox_id: 'sandbox-abc123',
780
- lines: 100
781
- });
782
-
783
- console.log('Logs:', logs);
784
- ```
785
-
786
- ---
787
-
788
- ### 3.4 Agentic Payments Issues
789
-
790
- **Payment authorization, mandates, and cryptographic operations.**
791
-
792
- #### Agentic Payments Keypair Issues
793
-
794
- **Symptoms:**
795
- ```javascript
796
- mcp__agentic-payments__sign_mandate({ mandate: {...}, private_key: 'key' });
797
- // Error: SIGNATURE_INVALID - Invalid private key format
798
- ```
799
-
800
- **Solutions:**
801
-
802
- 1. **Generate valid keypair:**
803
- ```javascript
804
- // Generate Ed25519 keypair
805
- const identity = mcp__agentic-payments__generate_agent_identity({
806
- include_private_key: true // IMPORTANT: Store securely!
807
- });
808
-
809
- console.log('Public Key:', identity.public_key);
810
- console.log('Private Key:', identity.private_key);
811
-
812
- // ⚠️ SECURITY: Store private_key in secure vault
813
- // NEVER commit to version control
814
- // NEVER log in production
815
- ```
816
-
817
- 2. **Verify key format:**
818
- ```javascript
819
- // Private keys are 64-byte hex strings (128 chars)
820
- const privateKey = identity.private_key;
821
-
822
- if (!/^[0-9a-f]{128}$/i.test(privateKey)) {
823
- console.error('Invalid private key format');
824
- }
825
-
826
- // Public keys are 32-byte hex strings (64 chars)
827
- const publicKey = identity.public_key;
828
-
829
- if (!/^[0-9a-f]{64}$/i.test(publicKey)) {
830
- console.error('Invalid public key format');
831
- }
832
- ```
833
-
834
- 3. **Store securely:**
835
- ```javascript
836
- // ✅ SECURE: Use environment variables
837
- process.env.AGENT_PRIVATE_KEY = identity.private_key;
838
-
839
- // ✅ SECURE: Use secrets manager
840
- await secretsManager.store('agent-private-key', identity.private_key);
841
-
842
- // ❌ INSECURE: Plain file
843
- fs.writeFileSync('private-key.txt', identity.private_key);
844
-
845
- // ❌ INSECURE: Version control
846
- git.add('keys.json'); // NEVER DO THIS
847
- ```
848
-
849
- #### Mandate Creation Issues
850
-
851
- **Symptoms:**
852
- ```javascript
853
- mcp__agentic-payments__create_active_mandate({
854
- agent: 'bot@example.com',
855
- holder: 'user-id',
856
- amount: 100,
857
- currency: 'USD',
858
- period: 'daily'
859
- });
860
- // Error: INVALID_PARAMS - Missing required field
861
- ```
862
-
863
- **Solutions:**
864
-
865
- 1. **Include all required fields:**
866
- ```javascript
867
- // ✅ Complete mandate
868
- const mandate = mcp__agentic-payments__create_active_mandate({
869
- agent: 'shopping-bot@agentics', // REQUIRED
870
- holder: 'user-public-key-abc123', // REQUIRED
871
- amount: 12000, // REQUIRED (minor units)
872
- currency: 'USD', // REQUIRED
873
- period: 'daily', // REQUIRED
874
- kind: 'intent', // REQUIRED ('intent' | 'cart')
875
- expires_at: '2025-12-31T23:59:59Z', // Optional (ISO8601)
876
- merchant_allow: [ // Optional
877
- 'amazon.com',
878
- 'bestbuy.com'
879
- ],
880
- merchant_block: [] // Optional
881
- });
882
- ```
883
-
884
- 2. **Use correct amount format:**
885
- ```javascript
886
- // ✅ CORRECT: Minor units (cents)
887
- amount: 12000 // $120.00
888
-
889
- // ❌ WRONG: Major units (dollars)
890
- amount: 120.00 // Will be interpreted as $1.20
891
-
892
- // Conversion helper
893
- const dollarsToMinorUnits = (dollars) => Math.round(dollars * 100);
894
- amount: dollarsToMinorUnits(120.00) // 12000
895
- ```
896
-
897
- 3. **Validate period:**
898
- ```javascript
899
- // ✅ Valid periods
900
- period: 'single' // One-time payment
901
- period: 'daily' // $X per day
902
- period: 'weekly' // $X per week
903
- period: 'monthly' // $X per month
904
-
905
- // ❌ Invalid
906
- period: 'yearly' // Not supported
907
- period: 'hourly' // Not supported
908
- ```
909
-
910
- 4. **Validate kind:**
911
- ```javascript
912
- // ✅ Intent-based (high-level purchase intent)
913
- kind: 'intent'
914
-
915
- // ✅ Cart-based (specific line items)
916
- kind: 'cart'
917
-
918
- // ❌ Invalid
919
- kind: 'subscription' // Not supported
920
- ```
921
-
922
- #### Signature Verification Issues
923
-
924
- **Symptoms:**
925
- ```javascript
926
- mcp__agentic-payments__verify_mandate({ signed_mandate: {...} });
927
- // Error: SIGNATURE_INVALID - Signature verification failed
928
- ```
929
-
930
- **Solutions:**
931
-
932
- 1. **Sign mandate correctly:**
933
- ```javascript
934
- // Step 1: Create mandate
935
- const mandate = mcp__agentic-payments__create_active_mandate({
936
- agent: 'bot@example.com',
937
- holder: identity.public_key, // Use public key
938
- amount: 10000,
939
- currency: 'USD',
940
- period: 'single',
941
- kind: 'intent'
942
- });
943
-
944
- // Step 2: Sign with private key
945
- const signed = mcp__agentic-payments__sign_mandate({
946
- mandate: mandate,
947
- private_key: identity.private_key // Use private key
948
- });
949
-
950
- // Step 3: Verify signature
951
- const verification = mcp__agentic-payments__verify_mandate({
952
- signed_mandate: signed,
953
- check_guards: true // Also check expiration
954
- });
955
-
956
- console.log('Valid:', verification.valid);
957
- ```
958
-
959
- 2. **Check guard conditions:**
960
- ```javascript
961
- // Mandate may be valid but expired
962
- const verification = mcp__agentic-payments__verify_mandate({
963
- signed_mandate: signed,
964
- check_guards: true // Checks expiration, revocation
965
- });
966
-
967
- if (!verification.valid) {
968
- console.log('Reason:', verification.reason);
969
-
970
- if (verification.reason === 'expired') {
971
- console.log('Mandate expired at:', verification.expired_at);
972
- }
973
-
974
- if (verification.reason === 'revoked') {
975
- console.log('Revoked at:', verification.revoked_at);
976
- console.log('Reason:', verification.revocation_reason);
977
- }
978
- }
979
- ```
980
-
981
- 3. **Check revocation status:**
982
- ```javascript
983
- // List all revoked mandates
984
- const revocations = mcp__agentic-payments__list_revocations();
985
-
986
- console.log('Revoked mandates:', revocations);
987
-
988
- // Check specific mandate
989
- const isRevoked = revocations.some(r =>
990
- r.mandate_id === signed.mandate_id
991
- );
992
-
993
- if (isRevoked) {
994
- console.log('Mandate was revoked');
995
- }
996
- ```
997
-
998
- ---
999
-
1000
- ## 4. Diagnostic Commands
1001
-
1002
- ### 4.1 System Diagnostics
1003
-
1004
- **Check overall system health:**
1005
-
1006
- ```bash
1007
- # 1. Claude Code version
1008
- claude --version
1009
- # Expected: v1.x.x or higher
1010
-
1011
- # 2. Node.js version
1012
- node --version
1013
- # Expected: v18.x.x or v20.x.x
1014
-
1015
- # 3. npm version
1016
- npm --version
1017
- # Expected: v9.x.x or higher
1018
-
1019
- # 4. Available disk space
1020
- df -h .
1021
- # Expected: At least 1GB free
1022
-
1023
- # 5. Memory available
1024
- free -h
1025
- # Expected: At least 512MB free
1026
-
1027
- # 6. Network connectivity
1028
- ping -c 3 api.anthropic.com
1029
- # Expected: 0% packet loss
1030
- ```
1031
-
1032
- ### 4.2 MCP Server Diagnostics
1033
-
1034
- **Check MCP server health:**
1035
-
1036
- ```bash
1037
- # 1. List installed servers
1038
- claude mcp list
1039
-
1040
- # 2. Check server status
1041
- claude mcp status claude-flow
1042
- claude mcp status flow-nexus
1043
- claude mcp status agentic-flow
1044
-
1045
- # 3. Restart specific server
1046
- claude mcp restart claude-flow
1047
-
1048
- # 4. Restart all servers
1049
- claude mcp restart --all
1050
-
1051
- # 5. View server logs
1052
- claude mcp logs claude-flow --tail 50
1053
-
1054
- # 6. Test server connectivity
1055
- npx claude-flow@alpha --version
1056
- npx flow-nexus@latest --version
1057
- ```
1058
-
1059
- ### 4.3 Network Diagnostics
1060
-
1061
- **Check network and API connectivity:**
1062
-
1063
- ```bash
1064
- # 1. Test API endpoints
1065
- curl -I https://api.anthropic.com
1066
- curl -I https://flow-nexus.ruv.io
1067
-
1068
- # 2. Check DNS resolution
1069
- nslookup api.anthropic.com
1070
- nslookup flow-nexus.ruv.io
1071
-
1072
- # 3. Test with proxy (if using one)
1073
- export HTTPS_PROXY=http://proxy.example.com:8080
1074
- curl -I https://api.anthropic.com
1075
-
1076
- # 4. Check SSL certificates
1077
- openssl s_client -connect api.anthropic.com:443 -servername api.anthropic.com
1078
-
1079
- # 5. Test websocket connection (for real-time features)
1080
- wscat -c wss://flow-nexus.ruv.io/ws
1081
- ```
1082
-
1083
- ### 4.4 Database Diagnostics
1084
-
1085
- **Check AgentDB health:**
1086
-
1087
- ```bash
1088
- # 1. Verify database files exist
1089
- ls -lh .agentdb/*.db
1090
-
1091
- # 2. Check database integrity
1092
- sqlite3 .agentdb/agentdb.db "PRAGMA integrity_check;"
1093
- # Expected: ok
1094
-
1095
- # 3. Check database size
1096
- du -sh .agentdb/
1097
-
1098
- # 4. List tables
1099
- sqlite3 .agentdb/agentdb.db ".tables"
1100
-
1101
- # 5. Check table counts
1102
- sqlite3 .agentdb/agentdb.db "
1103
- SELECT 'causal_edges' as table_name, COUNT(*) FROM causal_edges
1104
- UNION ALL
1105
- SELECT 'reflexion_trajectories', COUNT(*) FROM reflexion_trajectories
1106
- UNION ALL
1107
- SELECT 'skill_library', COUNT(*) FROM skill_library;
1108
- "
1109
-
1110
- # 6. Vacuum database (optimize)
1111
- sqlite3 .agentdb/agentdb.db "VACUUM;"
1112
- ```
1113
-
1114
- ---
1115
-
1116
- ## 5. Debug Mode
1117
-
1118
- ### 5.1 Enable Debug Logging
1119
-
1120
- **Environment variables:**
1121
-
1122
- ```bash
1123
- # Claude Flow debug mode
1124
- export DEBUG=claude-flow:*
1125
- export CLAUDE_FLOW_VERBOSE=true
1126
-
1127
- # Flow Nexus debug mode
1128
- export FLOW_NEXUS_DEBUG=true
1129
- export FLOW_NEXUS_LOG_LEVEL=debug
1130
-
1131
- # AgentDB debug mode
1132
- export AGENTDB_DEBUG=true
1133
- export AGENTDB_LOG_SQL=true
1134
-
1135
- # Node.js debug mode
1136
- export NODE_DEBUG=*
1137
- ```
1138
-
1139
- ### 5.2 Debug Tool Calls
1140
-
1141
- **Test individual tools with verbose output:**
1142
-
1143
- ```javascript
1144
- // Enable debug before calling tools
1145
- process.env.MCP_DEBUG = 'true';
1146
- process.env.MCP_VERBOSE = 'true';
1147
-
1148
- // Test tool call
1149
- const result = mcp__claude-flow__swarm_init({
1150
- topology: 'mesh',
1151
- maxAgents: 8
1152
- });
1153
-
1154
- // Expected debug output:
1155
- // [MCP] Connecting to server: claude-flow
1156
- // [MCP] Server connected successfully
1157
- // [MCP] Calling tool: swarm_init
1158
- // [MCP] Parameters: {"topology":"mesh","maxAgents":8}
1159
- // [MCP] Request sent, waiting for response...
1160
- // [MCP] Response received in 45ms
1161
- // [MCP] Response: {"success":true,"swarmId":"abc123"}
1162
- ```
1163
-
1164
- ### 5.3 Capture Network Logs
1165
-
1166
- **Monitor MCP protocol communication:**
1167
-
1168
- ```bash
1169
- # 1. Install mitmproxy (optional)
1170
- pip install mitmproxy
1171
-
1172
- # 2. Start proxy
1173
- mitmweb -p 8080
1174
-
1175
- # 3. Configure Claude Code to use proxy
1176
- export HTTP_PROXY=http://localhost:8080
1177
- export HTTPS_PROXY=http://localhost:8080
1178
-
1179
- # 4. Open http://localhost:8081 to view traffic
1180
-
1181
- # 5. Run MCP commands
1182
- # All traffic will be visible in mitmweb
1183
- ```
1184
-
1185
- ### 5.4 Debug Sandbox Execution
1186
-
1187
- **Test sandbox code step-by-step:**
1188
-
1189
- ```javascript
1190
- // 1. Create sandbox with verbose logging
1191
- const sandbox = mcp__flow-nexus__sandbox_create({
1192
- template: 'node',
1193
- name: 'debug-sandbox',
1194
- env_vars: {
1195
- DEBUG: '*',
1196
- NODE_ENV: 'development'
1197
- }
1198
- });
1199
-
1200
- // 2. Execute with capture_output
1201
- const result = mcp__flow-nexus__sandbox_execute({
1202
- sandbox_id: sandbox.data.sandbox_id,
1203
- code: `
1204
- console.log('Debug: Starting execution');
1205
- console.error('Debug: Error stream test');
1206
- process.stdout.write('Debug: stdout test\\n');
1207
- process.stderr.write('Debug: stderr test\\n');
1208
- console.log('Debug: Completed');
1209
- `,
1210
- capture_output: true // Capture stdout/stderr
1211
- });
1212
-
1213
- console.log('Output:', result.output);
1214
- console.log('Errors:', result.errors);
1215
-
1216
- // 3. Check sandbox logs
1217
- const logs = mcp__flow-nexus__sandbox_logs({
1218
- sandbox_id: sandbox.data.sandbox_id,
1219
- lines: 100
1220
- });
1221
-
1222
- console.log('Full logs:', logs);
1223
-
1224
- // 4. Cleanup
1225
- mcp__flow-nexus__sandbox_delete({
1226
- sandbox_id: sandbox.data.sandbox_id
1227
- });
1228
- ```
1229
-
1230
- ---
1231
-
1232
- ## 6. Error Code Reference
1233
-
1234
- ### 6.1 Authentication Errors
1235
-
1236
- | Code | Description | Solution |
1237
- |------|-------------|----------|
1238
- | `AUTH_REQUIRED` | No authentication session | Run login command |
1239
- | `AUTH_EXPIRED` | Session token expired | Login again |
1240
- | `AUTH_INVALID` | Invalid credentials | Check email/password |
1241
- | `EMAIL_NOT_VERIFIED` | Email verification pending | Check email, click verification link |
1242
- | `INVALID_TOKEN` | Bad verification/reset token | Request new token |
1243
-
1244
- ### 6.2 Parameter Errors
1245
-
1246
- | Code | Description | Solution |
1247
- |------|-------------|----------|
1248
- | `INVALID_PARAMS` | Wrong parameter types/values | Check tool documentation |
1249
- | `MISSING_PARAM` | Required parameter not provided | Add missing parameter |
1250
- | `INVALID_TOPOLOGY` | Unsupported swarm topology | Use: mesh, hierarchical, ring, star |
1251
- | `INVALID_TEMPLATE` | Unknown sandbox template | Use: node, python, react, nextjs, base |
1252
- | `INVALID_AMOUNT` | Payment amount out of range | Check minimum/maximum limits |
1253
-
1254
- ### 6.3 Resource Errors
1255
-
1256
- | Code | Description | Solution |
1257
- |------|-------------|----------|
1258
- | `RATE_LIMITED` | Too many requests | Wait, then retry |
1259
- | `INSUFFICIENT_CREDITS` | Low balance | Add credits |
1260
- | `QUOTA_EXCEEDED` | Exceeded usage quota | Upgrade tier or wait for reset |
1261
- | `SANDBOX_LIMIT` | Too many active sandboxes | Delete unused sandboxes |
1262
- | `MEMORY_LIMIT` | Memory usage too high | Reduce data size or upgrade |
1263
-
1264
- ### 6.4 Server Errors
1265
-
1266
- | Code | Description | Solution |
1267
- |------|-------------|----------|
1268
- | `SERVER_ERROR` | Internal server error | Retry later, report if persists |
1269
- | `SERVICE_UNAVAILABLE` | Server temporarily down | Wait and retry |
1270
- | `TIMEOUT` | Request took too long | Increase timeout or simplify request |
1271
- | `CONNECTION_FAILED` | Cannot connect to server | Check network, restart server |
1272
- | `DATABASE_ERROR` | Database operation failed | Check disk space, restart |
1273
-
1274
- ### 6.5 Database Errors
1275
-
1276
- | Code | Description | Solution |
1277
- |------|-------------|----------|
1278
- | `SQLITE_BUSY` | Database locked | Wait and retry, close other connections |
1279
- | `SQLITE_CANTOPEN` | Cannot open database | Check permissions and path |
1280
- | `SQLITE_CORRUPT` | Database corrupted | Restore from backup |
1281
- | `DISK_FULL` | No disk space | Free up space |
1282
- | `CONSTRAINT_VIOLATION` | Unique constraint failed | Check for duplicates |
1283
-
1284
- ### 6.6 Cryptographic Errors
1285
-
1286
- | Code | Description | Solution |
1287
- |------|-------------|----------|
1288
- | `SIGNATURE_INVALID` | Signature verification failed | Check private key, regenerate if needed |
1289
- | `KEYPAIR_MISMATCH` | Public key doesn't match private | Regenerate keypair |
1290
- | `MANDATE_EXPIRED` | Mandate past expiration | Create new mandate |
1291
- | `MANDATE_REVOKED` | Mandate was revoked | Create new mandate |
1292
- | `CONSENSUS_FAILED` | Multi-agent consensus failed | Check agent keys, retry |
1293
-
1294
- ---
1295
-
1296
- ## 7. Getting Help
1297
-
1298
- ### 7.1 GitHub Issues
1299
-
1300
- **Report bugs or request features:**
1301
-
1302
- - **Claude Flow:** https://github.com/ruvnet/claude-flow/issues
1303
- - **Flow Nexus:** https://github.com/ruvnet/flow-nexus/issues
1304
- - **AgentDB:** https://github.com/ruvnet/agentic-flow/issues
1305
-
1306
- **When reporting issues, include:**
1307
-
1308
- 1. **Environment:**
1309
- ```
1310
- OS: [e.g., macOS 14.1, Ubuntu 22.04]
1311
- Node.js: [e.g., v20.10.0]
1312
- Claude Code: [e.g., v1.2.0]
1313
- MCP Server: [e.g., claude-flow@alpha]
1314
- ```
1315
-
1316
- 2. **Steps to reproduce:**
1317
- ```
1318
- 1. Run command: mcp__claude-flow__swarm_init({ topology: 'mesh' })
1319
- 2. Observe error: ...
1320
- 3. Expected: swarm initialized successfully
1321
- ```
1322
-
1323
- 3. **Error output:**
1324
- ```
1325
- Error: ...
1326
- Stack trace: ...
1327
- ```
1328
-
1329
- 4. **Debug logs:**
1330
- ```bash
1331
- DEBUG=* npx claude-flow@alpha mcp start
1332
- # Include output
1333
- ```
1334
-
1335
- ### 7.2 Documentation
1336
-
1337
- **Reference documentation:**
1338
-
1339
- - **Main docs:** `/workspaces/agentic-flow/docs/guides/MCP-TOOLS.md`
1340
- - **Quick start:** `/workspaces/agentic-flow/docs/guides/MCP-QUICKSTART.md`
1341
- - **Authentication:** `/workspaces/agentic-flow/docs/guides/MCP-AUTHENTICATION.md`
1342
- - **Examples:** `/workspaces/agentic-flow/docs/guides/MCP-EXAMPLES.md`
1343
- - **AgentDB CLI:** `/workspaces/agentic-flow/docs/agentdb/CLI_GUIDE.md`
1344
- - **Architecture:** `/workspaces/agentic-flow/docs/mcp-tools-architecture.md`
1345
-
1346
- ### 7.3 Community Support
1347
-
1348
- **Get help from the community:**
1349
-
1350
- - **Discord:** Join the Claude Flow community (link in GitHub README)
1351
- - **Stack Overflow:** Tag questions with `claude-flow`, `mcp-tools`, `agentdb`
1352
- - **GitHub Discussions:** https://github.com/ruvnet/claude-flow/discussions
1353
-
1354
- ### 7.4 Professional Support
1355
-
1356
- **For enterprise support:**
1357
-
1358
- - **Email:** support@ruv.io
1359
- - **Flow Nexus Platform:** https://flow-nexus.ruv.io/support
1360
- - **Enterprise Plans:** Contact for SLA-backed support
1361
-
1362
- ---
1363
-
1364
- ## 8. FAQ
1365
-
1366
- ### 8.1 Installation & Setup
1367
-
1368
- **Q: Do I need all 4 MCP servers?**
1369
-
1370
- A: No. Start with Claude Flow (core orchestration). Add others as needed:
1371
- - **Flow Nexus:** Cloud execution, sandboxes (requires registration)
1372
- - **Agentic Payments:** Payment authorization (requires keypair)
1373
- - **AgentDB:** Advanced memory (included in Claude Flow, but can be standalone)
1374
-
1375
- **Q: Why is claude-flow@alpha instead of latest?**
1376
-
1377
- A: The alpha release includes cutting-edge features. Use `@latest` for stable releases.
1378
-
1379
- **Q: Can I use MCP tools without Claude Code?**
1380
-
1381
- A: Technically yes (with MCP SDK), but Claude Code provides the best integration.
1382
-
1383
- ---
1384
-
1385
- **Q: What's the difference between claude-flow and flow-nexus?**
1386
-
1387
- A:
1388
- - **Claude Flow:** Local orchestration, no auth, free
1389
- - **Flow Nexus:** Cloud-based, auth required, free tier + paid
1390
-
1391
- ---
1392
-
1393
- ### 8.2 Authentication & Security
1394
-
1395
- **Q: Is my Flow Nexus password secure?**
1396
-
1397
- A: Yes. Passwords are hashed with bcrypt (industry standard). Never stored in plaintext.
1398
-
1399
- ---
1400
-
1401
- **Q: How do I rotate my agent identity keypair?**
1402
-
1403
- A:
1404
- ```javascript
1405
- // 1. Generate new keypair
1406
- const newIdentity = mcp__agentic-payments__generate_agent_identity({
1407
- include_private_key: true
1408
- });
1409
-
1410
- // 2. Revoke old mandates
1411
- mcp__agentic-payments__revoke_mandate({
1412
- mandate_id: 'old-mandate-id',
1413
- reason: 'Keypair rotation'
1414
- });
1415
-
1416
- // 3. Create new mandates with new keypair
1417
- mcp__agentic-payments__create_active_mandate({
1418
- holder: newIdentity.public_key,
1419
- // ... other params
1420
- });
1421
-
1422
- // 4. Update stored keypair
1423
- // Store newIdentity.private_key securely
1424
- ```
1425
-
1426
- ---
1427
-
1428
- **Q: Can I share my private key between agents?**
1429
-
1430
- A: **NO.** Each agent should have its own keypair. Sharing compromises security.
1431
-
1432
- ---
1433
-
1434
- ### 8.3 Performance & Optimization
1435
-
1436
- **Q: Why is sandbox creation slow?**
1437
-
1438
- A: Sandboxes provision cloud resources. Use lighter templates or reuse sandboxes:
1439
- ```javascript
1440
- // ❌ SLOW: Heavy template
1441
- mcp__flow-nexus__sandbox_create({ template: 'nextjs' });
1442
-
1443
- // ✅ FAST: Light template
1444
- mcp__flow-nexus__sandbox_create({ template: 'base' });
1445
- ```
1446
-
1447
- ---
1448
-
1449
- **Q: How can I reduce API costs?**
1450
-
1451
- A:
1452
- 1. **Reuse sandboxes** instead of creating new ones
1453
- 2. **Batch operations** (store multiple items at once)
1454
- 3. **Use caching** (check memory before API calls)
1455
- 4. **Optimize swarm size** (use minimum agents needed)
1456
-
1457
- ---
1458
-
1459
- **Q: What's the fastest swarm topology?**
1460
-
1461
- A: Depends on use case:
1462
- - **Mesh:** Best for peer-to-peer communication
1463
- - **Star:** Best for centralized coordination
1464
- - **Hierarchical:** Best for complex workflows
1465
- - **Ring:** Best for sequential processing
1466
-
1467
- ---
1468
-
1469
- ### 8.4 Debugging & Troubleshooting
1470
-
1471
- **Q: How do I know if a tool call succeeded?**
1472
-
1473
- A: Check the response:
1474
- ```javascript
1475
- const result = mcp__claude-flow__swarm_init({ topology: 'mesh' });
1476
-
1477
- if (result.success) {
1478
- console.log('Success:', result.data);
1479
- } else {
1480
- console.error('Error:', result.error);
1481
- }
1482
- ```
1483
-
1484
- ---
1485
-
1486
- **Q: Can I see raw MCP protocol messages?**
1487
-
1488
- A: Yes, enable debug mode:
1489
- ```bash
1490
- export MCP_DEBUG=true
1491
- export MCP_VERBOSE=true
1492
- ```
1493
-
1494
- ---
1495
-
1496
- **Q: What if a sandbox becomes unresponsive?**
1497
-
1498
- A:
1499
- ```javascript
1500
- // 1. Check status
1501
- mcp__flow-nexus__sandbox_status({ sandbox_id: 'abc123' });
1502
-
1503
- // 2. Check logs
1504
- mcp__flow-nexus__sandbox_logs({ sandbox_id: 'abc123' });
1505
-
1506
- // 3. Force delete if needed
1507
- mcp__flow-nexus__sandbox_delete({ sandbox_id: 'abc123' });
1508
- ```
1509
-
1510
- ---
1511
-
1512
- ### 8.5 Best Practices
1513
-
1514
- **Q: Should I use swarms for every task?**
1515
-
1516
- A: No. Use swarms for:
1517
- - Multi-step workflows
1518
- - Parallel execution
1519
- - Dynamic scaling
1520
-
1521
- Skip for simple single-agent tasks.
1522
-
1523
- ---
1524
-
1525
- **Q: How do I persist swarm state across sessions?**
1526
-
1527
- A:
1528
- ```javascript
1529
- // Save state
1530
- mcp__claude-flow__memory_usage({
1531
- action: 'store',
1532
- key: 'swarm-state-abc',
1533
- value: JSON.stringify(swarmState),
1534
- namespace: 'swarms'
1535
- });
1536
-
1537
- // Restore state
1538
- const saved = mcp__claude-flow__memory_usage({
1539
- action: 'retrieve',
1540
- key: 'swarm-state-abc',
1541
- namespace: 'swarms'
1542
- });
1543
- const swarmState = JSON.parse(saved.value);
1544
- ```
1545
-
1546
- ---
1547
-
1548
- **Q: What's the recommended memory namespace strategy?**
1549
-
1550
- A:
1551
- - `default`: Temporary data, single session
1552
- - `global`: Cross-session, application-wide
1553
- - `user-{id}`: Per-user data
1554
- - `project-{id}`: Per-project data
1555
- - `swarm-{id}`: Per-swarm coordination
1556
-
1557
- ---
1558
-
1559
- ## 9. Quick Reference
1560
-
1561
- ### 9.1 Most Common Issues
1562
-
1563
- 1. **"MCP server not found"** → `claude mcp add claude-flow npx claude-flow@alpha mcp start`
1564
- 2. **"AUTH_REQUIRED"** → `mcp__flow-nexus__user_login({ email, password })`
1565
- 3. **"RATE_LIMITED"** → Wait and retry, or upgrade tier
1566
- 4. **"SQLITE_BUSY"** → Close other connections, retry
1567
- 5. **"INVALID_PARAMS"** → Check tool documentation for correct parameters
1568
-
1569
- ### 9.2 Essential Commands
1570
-
1571
- ```bash
1572
- # Check server status
1573
- claude mcp list
1574
-
1575
- # Restart server
1576
- claude mcp restart claude-flow
1577
-
1578
- # View logs
1579
- claude mcp logs claude-flow --tail 50
1580
-
1581
- # Enable debug mode
1582
- export DEBUG=claude-flow:*
1583
-
1584
- # Check database
1585
- sqlite3 .agentdb/agentdb.db "PRAGMA integrity_check;"
1586
- ```
1587
-
1588
- ### 9.3 Support Contacts
1589
-
1590
- - **GitHub Issues:** https://github.com/ruvnet/claude-flow/issues
1591
- - **Documentation:** `/workspaces/agentic-flow/docs/guides/`
1592
- - **Community:** Discord (link in README)
1593
- - **Enterprise:** support@ruv.io
1594
-
1595
- ---
1596
-
1597
- **End of Troubleshooting Guide**
1598
-
1599
- **Version:** 1.0.0
1600
- **Last Updated:** 2025-10-22
1601
- **Next Review:** 2025-11-22
1602
- **Status:** ✅ Production Ready