@synsci/cli-darwin-x64 1.1.97 → 1.1.99
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bin/synsc +0 -0
- package/package.json +1 -1
- package/bin/skills/accelerate/SKILL.md +0 -332
- package/bin/skills/accelerate/references/custom-plugins.md +0 -453
- package/bin/skills/accelerate/references/megatron-integration.md +0 -489
- package/bin/skills/accelerate/references/performance.md +0 -525
- package/bin/skills/adaptyv/SKILL.md +0 -114
- package/bin/skills/adaptyv/reference/api_reference.md +0 -308
- package/bin/skills/adaptyv/reference/examples.md +0 -913
- package/bin/skills/adaptyv/reference/experiments.md +0 -360
- package/bin/skills/adaptyv/reference/protein_optimization.md +0 -637
- package/bin/skills/aeon/SKILL.md +0 -374
- package/bin/skills/aeon/references/anomaly_detection.md +0 -154
- package/bin/skills/aeon/references/classification.md +0 -144
- package/bin/skills/aeon/references/clustering.md +0 -123
- package/bin/skills/aeon/references/datasets_benchmarking.md +0 -387
- package/bin/skills/aeon/references/distances.md +0 -256
- package/bin/skills/aeon/references/forecasting.md +0 -140
- package/bin/skills/aeon/references/networks.md +0 -289
- package/bin/skills/aeon/references/regression.md +0 -118
- package/bin/skills/aeon/references/segmentation.md +0 -163
- package/bin/skills/aeon/references/similarity_search.md +0 -187
- package/bin/skills/aeon/references/transformations.md +0 -246
- package/bin/skills/alphafold-database/SKILL.md +0 -513
- package/bin/skills/alphafold-database/references/api_reference.md +0 -423
- package/bin/skills/anndata/SKILL.md +0 -400
- package/bin/skills/anndata/references/best_practices.md +0 -525
- package/bin/skills/anndata/references/concatenation.md +0 -396
- package/bin/skills/anndata/references/data_structure.md +0 -314
- package/bin/skills/anndata/references/io_operations.md +0 -404
- package/bin/skills/anndata/references/manipulation.md +0 -516
- package/bin/skills/arboreto/SKILL.md +0 -243
- package/bin/skills/arboreto/references/algorithms.md +0 -138
- package/bin/skills/arboreto/references/basic_inference.md +0 -151
- package/bin/skills/arboreto/references/distributed_computing.md +0 -242
- package/bin/skills/arboreto/scripts/basic_grn_inference.py +0 -97
- package/bin/skills/astropy/SKILL.md +0 -331
- package/bin/skills/astropy/references/coordinates.md +0 -273
- package/bin/skills/astropy/references/cosmology.md +0 -307
- package/bin/skills/astropy/references/fits.md +0 -396
- package/bin/skills/astropy/references/tables.md +0 -489
- package/bin/skills/astropy/references/time.md +0 -404
- package/bin/skills/astropy/references/units.md +0 -178
- package/bin/skills/astropy/references/wcs_and_other_modules.md +0 -373
- package/bin/skills/audiocraft/SKILL.md +0 -564
- package/bin/skills/audiocraft/references/advanced-usage.md +0 -666
- package/bin/skills/audiocraft/references/troubleshooting.md +0 -504
- package/bin/skills/autogpt/SKILL.md +0 -403
- package/bin/skills/autogpt/references/advanced-usage.md +0 -535
- package/bin/skills/autogpt/references/troubleshooting.md +0 -420
- package/bin/skills/awq/SKILL.md +0 -310
- package/bin/skills/awq/references/advanced-usage.md +0 -324
- package/bin/skills/awq/references/troubleshooting.md +0 -344
- package/bin/skills/axolotl/SKILL.md +0 -158
- package/bin/skills/axolotl/references/api.md +0 -5548
- package/bin/skills/axolotl/references/dataset-formats.md +0 -1029
- package/bin/skills/axolotl/references/index.md +0 -15
- package/bin/skills/axolotl/references/other.md +0 -3563
- package/bin/skills/benchling-integration/SKILL.md +0 -480
- package/bin/skills/benchling-integration/references/api_endpoints.md +0 -883
- package/bin/skills/benchling-integration/references/authentication.md +0 -379
- package/bin/skills/benchling-integration/references/sdk_reference.md +0 -774
- package/bin/skills/bigcode-evaluation-harness/SKILL.md +0 -405
- package/bin/skills/bigcode-evaluation-harness/references/benchmarks.md +0 -393
- package/bin/skills/bigcode-evaluation-harness/references/custom-tasks.md +0 -424
- package/bin/skills/bigcode-evaluation-harness/references/issues.md +0 -394
- package/bin/skills/biopython/SKILL.md +0 -443
- package/bin/skills/biopython/references/advanced.md +0 -577
- package/bin/skills/biopython/references/alignment.md +0 -362
- package/bin/skills/biopython/references/blast.md +0 -455
- package/bin/skills/biopython/references/databases.md +0 -484
- package/bin/skills/biopython/references/phylogenetics.md +0 -566
- package/bin/skills/biopython/references/sequence_io.md +0 -285
- package/bin/skills/biopython/references/structure.md +0 -564
- package/bin/skills/biorxiv-database/SKILL.md +0 -483
- package/bin/skills/biorxiv-database/references/api_reference.md +0 -280
- package/bin/skills/biorxiv-database/scripts/biorxiv_search.py +0 -445
- package/bin/skills/bioservices/SKILL.md +0 -361
- package/bin/skills/bioservices/references/identifier_mapping.md +0 -685
- package/bin/skills/bioservices/references/services_reference.md +0 -636
- package/bin/skills/bioservices/references/workflow_patterns.md +0 -811
- package/bin/skills/bioservices/scripts/batch_id_converter.py +0 -347
- package/bin/skills/bioservices/scripts/compound_cross_reference.py +0 -378
- package/bin/skills/bioservices/scripts/pathway_analysis.py +0 -309
- package/bin/skills/bioservices/scripts/protein_analysis_workflow.py +0 -408
- package/bin/skills/bitsandbytes/SKILL.md +0 -411
- package/bin/skills/bitsandbytes/references/memory-optimization.md +0 -521
- package/bin/skills/bitsandbytes/references/qlora-training.md +0 -521
- package/bin/skills/bitsandbytes/references/quantization-formats.md +0 -447
- package/bin/skills/blip-2/SKILL.md +0 -564
- package/bin/skills/blip-2/references/advanced-usage.md +0 -680
- package/bin/skills/blip-2/references/troubleshooting.md +0 -526
- package/bin/skills/brenda-database/SKILL.md +0 -719
- package/bin/skills/brenda-database/references/api_reference.md +0 -537
- package/bin/skills/brenda-database/scripts/brenda_queries.py +0 -844
- package/bin/skills/brenda-database/scripts/brenda_visualization.py +0 -772
- package/bin/skills/brenda-database/scripts/enzyme_pathway_builder.py +0 -1053
- package/bin/skills/cellxgene-census/SKILL.md +0 -511
- package/bin/skills/cellxgene-census/references/census_schema.md +0 -182
- package/bin/skills/cellxgene-census/references/common_patterns.md +0 -351
- package/bin/skills/chembl-database/SKILL.md +0 -389
- package/bin/skills/chembl-database/references/api_reference.md +0 -272
- package/bin/skills/chembl-database/scripts/example_queries.py +0 -278
- package/bin/skills/chroma/SKILL.md +0 -406
- package/bin/skills/chroma/references/integration.md +0 -38
- package/bin/skills/cirq/SKILL.md +0 -346
- package/bin/skills/cirq/references/building.md +0 -307
- package/bin/skills/cirq/references/experiments.md +0 -572
- package/bin/skills/cirq/references/hardware.md +0 -515
- package/bin/skills/cirq/references/noise.md +0 -515
- package/bin/skills/cirq/references/simulation.md +0 -350
- package/bin/skills/cirq/references/transformation.md +0 -416
- package/bin/skills/citation-management/SKILL.md +0 -1109
- package/bin/skills/citation-management/assets/bibtex_template.bib +0 -264
- package/bin/skills/citation-management/assets/citation_checklist.md +0 -386
- package/bin/skills/citation-management/references/bibtex_formatting.md +0 -908
- package/bin/skills/citation-management/references/citation_validation.md +0 -794
- package/bin/skills/citation-management/references/google_scholar_search.md +0 -725
- package/bin/skills/citation-management/references/metadata_extraction.md +0 -870
- package/bin/skills/citation-management/references/pubmed_search.md +0 -839
- package/bin/skills/citation-management/scripts/doi_to_bibtex.py +0 -182
- package/bin/skills/citation-management/scripts/extract_metadata.py +0 -570
- package/bin/skills/citation-management/scripts/format_bibtex.py +0 -349
- package/bin/skills/citation-management/scripts/search_google_scholar.py +0 -251
- package/bin/skills/citation-management/scripts/search_pubmed.py +0 -348
- package/bin/skills/citation-management/scripts/validate_citations.py +0 -494
- package/bin/skills/clinical-decision-support/README.md +0 -129
- package/bin/skills/clinical-decision-support/SKILL.md +0 -506
- package/bin/skills/clinical-decision-support/assets/biomarker_report_template.tex +0 -380
- package/bin/skills/clinical-decision-support/assets/clinical_pathway_template.tex +0 -222
- package/bin/skills/clinical-decision-support/assets/cohort_analysis_template.tex +0 -359
- package/bin/skills/clinical-decision-support/assets/color_schemes.tex +0 -149
- package/bin/skills/clinical-decision-support/assets/example_gbm_cohort.md +0 -208
- package/bin/skills/clinical-decision-support/assets/recommendation_strength_guide.md +0 -328
- package/bin/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +0 -529
- package/bin/skills/clinical-decision-support/references/biomarker_classification.md +0 -719
- package/bin/skills/clinical-decision-support/references/clinical_decision_algorithms.md +0 -604
- package/bin/skills/clinical-decision-support/references/evidence_synthesis.md +0 -840
- package/bin/skills/clinical-decision-support/references/outcome_analysis.md +0 -640
- package/bin/skills/clinical-decision-support/references/patient_cohort_analysis.md +0 -427
- package/bin/skills/clinical-decision-support/references/treatment_recommendations.md +0 -521
- package/bin/skills/clinical-decision-support/scripts/biomarker_classifier.py +0 -383
- package/bin/skills/clinical-decision-support/scripts/build_decision_tree.py +0 -417
- package/bin/skills/clinical-decision-support/scripts/create_cohort_tables.py +0 -509
- package/bin/skills/clinical-decision-support/scripts/generate_survival_analysis.py +0 -441
- package/bin/skills/clinical-decision-support/scripts/validate_cds_document.py +0 -326
- package/bin/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +0 -641
- package/bin/skills/clinical-reports/README.md +0 -236
- package/bin/skills/clinical-reports/SKILL.md +0 -1127
- package/bin/skills/clinical-reports/assets/case_report_template.md +0 -352
- package/bin/skills/clinical-reports/assets/clinical_trial_csr_template.md +0 -353
- package/bin/skills/clinical-reports/assets/clinical_trial_sae_template.md +0 -359
- package/bin/skills/clinical-reports/assets/consult_note_template.md +0 -305
- package/bin/skills/clinical-reports/assets/discharge_summary_template.md +0 -453
- package/bin/skills/clinical-reports/assets/hipaa_compliance_checklist.md +0 -395
- package/bin/skills/clinical-reports/assets/history_physical_template.md +0 -305
- package/bin/skills/clinical-reports/assets/lab_report_template.md +0 -309
- package/bin/skills/clinical-reports/assets/pathology_report_template.md +0 -249
- package/bin/skills/clinical-reports/assets/quality_checklist.md +0 -338
- package/bin/skills/clinical-reports/assets/radiology_report_template.md +0 -318
- package/bin/skills/clinical-reports/assets/soap_note_template.md +0 -253
- package/bin/skills/clinical-reports/references/case_report_guidelines.md +0 -570
- package/bin/skills/clinical-reports/references/clinical_trial_reporting.md +0 -693
- package/bin/skills/clinical-reports/references/data_presentation.md +0 -530
- package/bin/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -629
- package/bin/skills/clinical-reports/references/medical_terminology.md +0 -588
- package/bin/skills/clinical-reports/references/patient_documentation.md +0 -744
- package/bin/skills/clinical-reports/references/peer_review_standards.md +0 -585
- package/bin/skills/clinical-reports/references/regulatory_compliance.md +0 -577
- package/bin/skills/clinical-reports/scripts/check_deidentification.py +0 -332
- package/bin/skills/clinical-reports/scripts/compliance_checker.py +0 -78
- package/bin/skills/clinical-reports/scripts/extract_clinical_data.py +0 -97
- package/bin/skills/clinical-reports/scripts/format_adverse_events.py +0 -97
- package/bin/skills/clinical-reports/scripts/generate_report_template.py +0 -149
- package/bin/skills/clinical-reports/scripts/terminology_validator.py +0 -126
- package/bin/skills/clinical-reports/scripts/validate_case_report.py +0 -323
- package/bin/skills/clinical-reports/scripts/validate_trial_report.py +0 -88
- package/bin/skills/clinicaltrials-database/SKILL.md +0 -507
- package/bin/skills/clinicaltrials-database/references/api_reference.md +0 -358
- package/bin/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +0 -215
- package/bin/skills/clinpgx-database/SKILL.md +0 -638
- package/bin/skills/clinpgx-database/references/api_reference.md +0 -757
- package/bin/skills/clinpgx-database/scripts/query_clinpgx.py +0 -518
- package/bin/skills/clinvar-database/SKILL.md +0 -362
- package/bin/skills/clinvar-database/references/api_reference.md +0 -227
- package/bin/skills/clinvar-database/references/clinical_significance.md +0 -218
- package/bin/skills/clinvar-database/references/data_formats.md +0 -358
- package/bin/skills/clip/SKILL.md +0 -253
- package/bin/skills/clip/references/applications.md +0 -207
- package/bin/skills/cobrapy/SKILL.md +0 -463
- package/bin/skills/cobrapy/references/api_quick_reference.md +0 -655
- package/bin/skills/cobrapy/references/workflows.md +0 -593
- package/bin/skills/colab-finetuning/SKILL.md +0 -153
- package/bin/skills/colab-finetuning/references/bridge-setup.md +0 -68
- package/bin/skills/colab-finetuning/references/gpu-tiers.md +0 -54
- package/bin/skills/colab-finetuning/references/troubleshooting.md +0 -79
- package/bin/skills/constitutional-ai/SKILL.md +0 -290
- package/bin/skills/cosmic-database/SKILL.md +0 -336
- package/bin/skills/cosmic-database/references/cosmic_data_reference.md +0 -220
- package/bin/skills/cosmic-database/scripts/download_cosmic.py +0 -231
- package/bin/skills/crewai/SKILL.md +0 -498
- package/bin/skills/crewai/references/flows.md +0 -438
- package/bin/skills/crewai/references/tools.md +0 -429
- package/bin/skills/crewai/references/troubleshooting.md +0 -480
- package/bin/skills/dask/SKILL.md +0 -456
- package/bin/skills/dask/references/arrays.md +0 -497
- package/bin/skills/dask/references/bags.md +0 -468
- package/bin/skills/dask/references/best-practices.md +0 -277
- package/bin/skills/dask/references/dataframes.md +0 -368
- package/bin/skills/dask/references/futures.md +0 -541
- package/bin/skills/dask/references/schedulers.md +0 -504
- package/bin/skills/datacommons-client/SKILL.md +0 -255
- package/bin/skills/datacommons-client/references/getting_started.md +0 -417
- package/bin/skills/datacommons-client/references/node.md +0 -250
- package/bin/skills/datacommons-client/references/observation.md +0 -185
- package/bin/skills/datacommons-client/references/resolve.md +0 -246
- package/bin/skills/datamol/SKILL.md +0 -706
- package/bin/skills/datamol/references/conformers_module.md +0 -131
- package/bin/skills/datamol/references/core_api.md +0 -130
- package/bin/skills/datamol/references/descriptors_viz.md +0 -195
- package/bin/skills/datamol/references/fragments_scaffolds.md +0 -174
- package/bin/skills/datamol/references/io_module.md +0 -109
- package/bin/skills/datamol/references/reactions_data.md +0 -218
- package/bin/skills/deepchem/SKILL.md +0 -597
- package/bin/skills/deepchem/references/api_reference.md +0 -303
- package/bin/skills/deepchem/references/workflows.md +0 -491
- package/bin/skills/deepchem/scripts/graph_neural_network.py +0 -338
- package/bin/skills/deepchem/scripts/predict_solubility.py +0 -224
- package/bin/skills/deepchem/scripts/transfer_learning.py +0 -375
- package/bin/skills/deepspeed/SKILL.md +0 -141
- package/bin/skills/deepspeed/references/08.md +0 -17
- package/bin/skills/deepspeed/references/09.md +0 -173
- package/bin/skills/deepspeed/references/2020.md +0 -378
- package/bin/skills/deepspeed/references/2023.md +0 -279
- package/bin/skills/deepspeed/references/assets.md +0 -179
- package/bin/skills/deepspeed/references/index.md +0 -35
- package/bin/skills/deepspeed/references/mii.md +0 -118
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- package/bin/skills/deepspeed/references/tutorials.md +0 -6554
- package/bin/skills/deeptools/SKILL.md +0 -531
- package/bin/skills/deeptools/assets/quick_reference.md +0 -58
- package/bin/skills/deeptools/references/effective_genome_sizes.md +0 -116
- package/bin/skills/deeptools/references/normalization_methods.md +0 -410
- package/bin/skills/deeptools/references/tools_reference.md +0 -533
- package/bin/skills/deeptools/references/workflows.md +0 -474
- package/bin/skills/deeptools/scripts/validate_files.py +0 -195
- package/bin/skills/deeptools/scripts/workflow_generator.py +0 -454
- package/bin/skills/denario/SKILL.md +0 -215
- package/bin/skills/denario/references/examples.md +0 -494
- package/bin/skills/denario/references/installation.md +0 -213
- package/bin/skills/denario/references/llm_configuration.md +0 -265
- package/bin/skills/denario/references/research_pipeline.md +0 -471
- package/bin/skills/diffdock/SKILL.md +0 -483
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- package/bin/skills/diffdock/scripts/analyze_results.py +0 -334
- package/bin/skills/diffdock/scripts/prepare_batch_csv.py +0 -254
- package/bin/skills/diffdock/scripts/setup_check.py +0 -278
- package/bin/skills/dnanexus-integration/SKILL.md +0 -383
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# Reinforcement Learning
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## Quick Start
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```bash
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```
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Fine-tunes Llama-3.1-8B on GSM8K with reward:
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1[answer correct] + 0.1 * (1[format correct] - 1)
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```
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Training takes ~1 min/iteration, reaches ~63% accuracy after 15 iterations.
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## Basic RL Config
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```python
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import chz
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import asyncio
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from tinker_cookbook.rl import train
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from tinker_cookbook import model_info
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from tinker_cookbook.recipes.math_rl.math_env import Gsm8kDatasetBuilder
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def build_config_blueprint() -> chz.Blueprint[train.Config]:
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model_name = "meta-llama/Llama-3.1-8B"
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renderer_name = model_info.get_recommended_renderer_name(model_name)
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builder = Gsm8kDatasetBuilder(
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group_size=16,
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)
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return chz.Blueprint(train.Config).apply({
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"log_path": "/tmp/rl_basic",
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"dataset_builder": builder,
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"learning_rate": 4e-5,
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"max_tokens": 256,
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})
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if __name__ == "__main__":
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blueprint.make_from_argv(sys.argv[1:])
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asyncio.run(train.main(blueprint.make()))
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## Key Metrics
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### Env
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Stateful environment for a single agent episode. Discard after one episode.
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```python
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class MyEnv(Env):
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### TokenCompleter (for RL training)
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class TokenCompleter:
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```python
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class MessageCompleter:
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async def __call__(self, messages: list[renderers.Message]) -> renderers.Message:
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Operates at message level — useful for judge models, multi-agent environments, and evaluation. Requires a renderer to convert messages to tokens for the sampling client.
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Concrete implementations: `TinkerTokenCompleter` and `TinkerMessageCompleter` (wrappers around `tinker.SamplingClient`).
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## Custom RL Loop
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```python
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class Config:
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def main(config: Config):
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training_client = service_client.create_lora_training_client(
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tokenizer
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sampling_params = types.SamplingParams(
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adam_params = types.AdamParams(learning_rate=config.learning_rate)
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sampling_path = training_client.save_weights_for_sampler(name=f"{batch_idx:06d}").result().path
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sampling_client = service_client.create_sampling_client(model_path=sampling_path)
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datums = []
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convo = [{"role": "user", "content": question}]
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# Sample group_size responses
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result = sampling_client.sample(
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).result()
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rewards.append(reward)
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advantages = [r - mean_reward for r in rewards]
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for seq, advantage in zip(result.sequences, advantages):
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datum = types.Datum(
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# Training step
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fwd_bwd = training_client.forward_backward(datums, loss_fn="importance_sampling")
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optim = training_client.optim_step(adam_params)
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optim.result()
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```
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## Hyperparameters
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### Learning Rate
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Same guidance as SL — use `get_lr(model_name)` as starting point. The rl_basic recipe uses `4e-5` for Llama-3.1-8B.
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### Batch and Group Sizes
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Scale LR proportionally: `LR ∝ √batch_size`
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### Multiple Updates (num_substeps)
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```
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Use with PPO objective. Start with 2-4. Higher values risk out-of-distribution updates.
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### Streaming Minibatch Training
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Overlaps sampling and training for throughput (on-policy, pipeline efficiency only):
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StreamMinibatchConfig(
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AsyncConfig(
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Start with `max_steps_off_policy < 5`. Monitor KL divergence carefully.
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## Sequence Extension Property
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Critical for multi-turn RL efficiency. When consecutive timesteps satisfy the extension property (each observation is a prefix extension of the previous), compute scales O(T) instead of O(T²).
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### When Extension Holds
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With `Qwen3Renderer(strip_thinking_from_history=False)`, thinking blocks are preserved:
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```
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Timestep 1: [User: Q1] [A: <think>...</think> A1] [User:]
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Timestep 2: [User: Q1] [A: <think>...</think> A1] [User: Q2] [A: <think>...</think> A2] [User:]
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```
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Timestep 2 contains timestep 1 as a prefix → single Datum, KV-cache reuse.
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### When Extension Breaks
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With default `strip_thinking_from_history=True`, `<think>` blocks are stripped from history:
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```
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Timestep 1: [User: Q1] [A: <think>...</think> A1] [User:]
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Timestep 2: [User: Q1] [A: A1] [User: Q2] [A: <think>...</think> A2] [User:]
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```
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Prefix doesn't match → separate Datums per timestep, O(T²) compute.
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### Check Programmatically
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```python
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renderer.has_extension_property # True or False
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```
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For `Qwen3Renderer`:
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- `strip_thinking_from_history=False` → `has_extension_property=True`
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- `strip_thinking_from_history=True` (default) → `has_extension_property=False`
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### Periodic Compaction (Hybrid)
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Keep thinking visible most of the time, periodically strip old thinking blocks:
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- Turns 1-N: keep thinking visible (extension holds, single datum)
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- Turn N+1: strip thinking from turns 1-N (extension breaks once)
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- Turns N+1 to 2N: keep thinking visible again
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- Repeat every N turns
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This amortizes recomputation cost over N turns with bounded context growth.
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## Monitoring
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### KL Divergence
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Monitor `kl_sample_train_v1/v2`:
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- Should stay below 0.01 for stable training
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- Even on-policy training shows non-zero KL (implementation detail)
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- KL crossing threshold indicates numerical instability
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### Reward Curves
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```python
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import pandas
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df = pandas.read_json("/tmp/rl-loop/metrics.jsonl", lines=True)
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|
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plt.plot(df["reward/total"])
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|
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```
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|
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|
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## Loss Functions for RL
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|
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| Loss | Description |
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|------|-------------|
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| `importance_sampling` | Policy gradient with importance weighting |
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| `ppo` | Proximal Policy Optimization with clipping |
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| `cispo` | Clipped Importance Sampling PO |
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| `dro` | Direct Reward Optimization |
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See [Loss Functions](loss-functions.md) for details.
|
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@@ -1,255 +0,0 @@
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# Rendering to Tokens
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Renderers convert messages ↔ tokens for training and inference.
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|
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|
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|
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## Getting a Renderer
|
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|
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|
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```python
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|
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|
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from tinker_cookbook.model_info import get_recommended_renderer_name
|
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|
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from tinker_cookbook.renderers import get_renderer
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|
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from tinker_cookbook.tokenizer_utils import get_tokenizer
|
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|
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12
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model_name = "meta-llama/Llama-3.1-8B"
|
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13
|
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renderer_name = get_recommended_renderer_name(model_name)
|
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14
|
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|
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15
|
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tokenizer = get_tokenizer(model_name)
|
|
16
|
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renderer = get_renderer(name=renderer_name, tokenizer=tokenizer)
|
|
17
|
-
```
|
|
18
|
-
|
|
19
|
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**Renderer names:** `qwen3`, `qwen3_disable_thinking`, `qwen3_instruct`, `qwen3_vl`, `qwen3_vl_instruct`, `llama3`, `deepseekv3`, `deepseekv3_thinking`, `kimi_k2`, `gpt_oss_no_sysprompt`, `gpt_oss_low_reasoning`, `gpt_oss_medium_reasoning`, `gpt_oss_high_reasoning`, `role_colon`
|
|
20
|
-
|
|
21
|
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## HuggingFace Compatibility
|
|
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|
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|
|
23
|
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Default renderers produce **identical tokens** to HuggingFace's `apply_chat_template`:
|
|
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|
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|
|
25
|
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| Renderer | HF Equivalent |
|
|
26
|
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|----------|---------------|
|
|
27
|
-
| `qwen3` | `apply_chat_template(..., enable_thinking=True)` |
|
|
28
|
-
| `qwen3_disable_thinking` | `apply_chat_template(..., enable_thinking=False)` |
|
|
29
|
-
| `llama3` | `apply_chat_template(...)` * |
|
|
30
|
-
| `deepseekv3` | `apply_chat_template(...)` |
|
|
31
|
-
|
|
32
|
-
\* Llama3 omits "Cutting Knowledge Date..." preamble
|
|
33
|
-
|
|
34
|
-
## Core Methods
|
|
35
|
-
|
|
36
|
-
### build_supervised_example
|
|
37
|
-
|
|
38
|
-
For training with loss weights:
|
|
39
|
-
|
|
40
|
-
```python
|
|
41
|
-
from tinker_cookbook.renderers import TrainOnWhat
|
|
42
|
-
|
|
43
|
-
messages = [
|
|
44
|
-
{"role": "user", "content": "What is 2+2?"},
|
|
45
|
-
{"role": "assistant", "content": "4"},
|
|
46
|
-
]
|
|
47
|
-
|
|
48
|
-
model_input, weights = renderer.build_supervised_example(
|
|
49
|
-
messages,
|
|
50
|
-
train_on_what=TrainOnWhat.ALL_ASSISTANT_MESSAGES,
|
|
51
|
-
)
|
|
52
|
-
# model_input: ModelInput (token sequence)
|
|
53
|
-
# weights: per-token weights (0.0 = prompt, 1.0 = train)
|
|
54
|
-
```
|
|
55
|
-
|
|
56
|
-
**Default behavior:** If `train_on_what` is omitted, defaults to `LAST_ASSISTANT_MESSAGE`. Always specify explicitly to avoid surprises.
|
|
57
|
-
|
|
58
|
-
```python
|
|
59
|
-
# WRONG — silently trains only on last assistant message
|
|
60
|
-
model_input, weights = renderer.build_supervised_example(messages)
|
|
61
|
-
|
|
62
|
-
# RIGHT — explicitly train on all assistant messages
|
|
63
|
-
model_input, weights = renderer.build_supervised_example(
|
|
64
|
-
messages, train_on_what=TrainOnWhat.ALL_ASSISTANT_MESSAGES
|
|
65
|
-
)
|
|
66
|
-
```
|
|
67
|
-
|
|
68
|
-
### build_generation_prompt
|
|
69
|
-
|
|
70
|
-
For inference:
|
|
71
|
-
|
|
72
|
-
```python
|
|
73
|
-
messages = [
|
|
74
|
-
{"role": "system", "content": "You are helpful."},
|
|
75
|
-
{"role": "user", "content": "What is 2+2?"},
|
|
76
|
-
]
|
|
77
|
-
|
|
78
|
-
prompt = renderer.build_generation_prompt(messages)
|
|
79
|
-
# Returns ModelInput ready for sampling
|
|
80
|
-
```
|
|
81
|
-
|
|
82
|
-
### get_stop_sequences
|
|
83
|
-
|
|
84
|
-
```python
|
|
85
|
-
stop_sequences = renderer.get_stop_sequences()
|
|
86
|
-
|
|
87
|
-
sampling_params = SamplingParams(
|
|
88
|
-
max_tokens=100,
|
|
89
|
-
stop=stop_sequences,
|
|
90
|
-
)
|
|
91
|
-
```
|
|
92
|
-
|
|
93
|
-
### parse_response
|
|
94
|
-
|
|
95
|
-
```python
|
|
96
|
-
output_tokens = result.sequences[0].tokens
|
|
97
|
-
message, success = renderer.parse_response(output_tokens)
|
|
98
|
-
# {"role": "assistant", "content": "..."}
|
|
99
|
-
```
|
|
100
|
-
|
|
101
|
-
## TrainOnWhat Enum
|
|
102
|
-
|
|
103
|
-
```python
|
|
104
|
-
from tinker_cookbook.renderers import TrainOnWhat
|
|
105
|
-
|
|
106
|
-
# Train on ALL assistant messages
|
|
107
|
-
TrainOnWhat.ALL_ASSISTANT_MESSAGES
|
|
108
|
-
|
|
109
|
-
# Train only on LAST assistant message
|
|
110
|
-
TrainOnWhat.LAST_ASSISTANT_MESSAGE
|
|
111
|
-
```
|
|
112
|
-
|
|
113
|
-
**ALL_ASSISTANT_MESSAGES:**
|
|
114
|
-
```python
|
|
115
|
-
messages = [
|
|
116
|
-
{"role": "user", "content": "Hello"},
|
|
117
|
-
{"role": "assistant", "content": "Hi!"}, # weight=1
|
|
118
|
-
{"role": "user", "content": "How are you?"},
|
|
119
|
-
{"role": "assistant", "content": "Good!"}, # weight=1
|
|
120
|
-
]
|
|
121
|
-
```
|
|
122
|
-
|
|
123
|
-
**LAST_ASSISTANT_MESSAGE:**
|
|
124
|
-
```python
|
|
125
|
-
messages = [
|
|
126
|
-
{"role": "user", "content": "Let me think..."},
|
|
127
|
-
{"role": "assistant", "content": "..."}, # weight=0
|
|
128
|
-
{"role": "user", "content": "Answer?"},
|
|
129
|
-
{"role": "assistant", "content": "42"}, # weight=1
|
|
130
|
-
]
|
|
131
|
-
```
|
|
132
|
-
|
|
133
|
-
Use `LAST` for classification, reward modeling, preference learning.
|
|
134
|
-
|
|
135
|
-
## Message Formats
|
|
136
|
-
|
|
137
|
-
### Text-Only
|
|
138
|
-
|
|
139
|
-
```python
|
|
140
|
-
messages = [
|
|
141
|
-
{"role": "system", "content": "You are helpful."},
|
|
142
|
-
{"role": "user", "content": "Hello"},
|
|
143
|
-
{"role": "assistant", "content": "Hi!"},
|
|
144
|
-
]
|
|
145
|
-
```
|
|
146
|
-
|
|
147
|
-
### Vision (Multi-Modal)
|
|
148
|
-
|
|
149
|
-
```python
|
|
150
|
-
messages = [
|
|
151
|
-
{
|
|
152
|
-
"role": "user",
|
|
153
|
-
"content": [
|
|
154
|
-
{"type": "image", "image": image_bytes},
|
|
155
|
-
{"type": "text", "text": "What's in this image?"},
|
|
156
|
-
]
|
|
157
|
-
},
|
|
158
|
-
{"role": "assistant", "content": "A cat."}
|
|
159
|
-
]
|
|
160
|
-
```
|
|
161
|
-
|
|
162
|
-
## Using with conversation_to_datum
|
|
163
|
-
|
|
164
|
-
```python
|
|
165
|
-
from tinker_cookbook.supervised.data import conversation_to_datum
|
|
166
|
-
|
|
167
|
-
datum = conversation_to_datum(
|
|
168
|
-
messages=messages,
|
|
169
|
-
renderer=renderer,
|
|
170
|
-
max_length=2048,
|
|
171
|
-
train_on_what=TrainOnWhat.ALL_ASSISTANT_MESSAGES,
|
|
172
|
-
)
|
|
173
|
-
# Returns Datum ready for training
|
|
174
|
-
```
|
|
175
|
-
|
|
176
|
-
## Format Examples
|
|
177
|
-
|
|
178
|
-
### ChatML
|
|
179
|
-
|
|
180
|
-
```
|
|
181
|
-
<|im_start|>system
|
|
182
|
-
You are helpful.<|im_end|>
|
|
183
|
-
<|im_start|>user
|
|
184
|
-
What is 2+2?<|im_end|>
|
|
185
|
-
<|im_start|>assistant
|
|
186
|
-
4<|im_end|>
|
|
187
|
-
```
|
|
188
|
-
|
|
189
|
-
### Llama 3
|
|
190
|
-
|
|
191
|
-
```
|
|
192
|
-
<|begin_of_text|><|start_header_id|>system<|end_header_id|>
|
|
193
|
-
|
|
194
|
-
You are helpful.<|eot_id|><|start_header_id|>user<|end_header_id|>
|
|
195
|
-
|
|
196
|
-
What is 2+2?<|eot_id|><|start_header_id|>assistant<|end_header_id|>
|
|
197
|
-
|
|
198
|
-
4<|eot_id|>
|
|
199
|
-
```
|
|
200
|
-
|
|
201
|
-
**Important:** Don't construct formats manually—use renderers!
|
|
202
|
-
|
|
203
|
-
## Vision Renderers
|
|
204
|
-
|
|
205
|
-
For VLMs (Qwen3-VL):
|
|
206
|
-
|
|
207
|
-
```python
|
|
208
|
-
from tinker_cookbook.image_processing_utils import get_image_processor
|
|
209
|
-
|
|
210
|
-
model_name = "Qwen/Qwen3-VL-235B-A22B-Instruct"
|
|
211
|
-
tokenizer = get_tokenizer(model_name)
|
|
212
|
-
image_processor = get_image_processor(model_name)
|
|
213
|
-
|
|
214
|
-
renderer = renderers.Qwen3VLInstructRenderer(tokenizer, image_processor)
|
|
215
|
-
|
|
216
|
-
messages = [
|
|
217
|
-
{
|
|
218
|
-
"role": "user",
|
|
219
|
-
"content": [
|
|
220
|
-
{"type": "image", "image": "https://example.com/image.png"},
|
|
221
|
-
{"type": "text", "text": "What is this?"},
|
|
222
|
-
]
|
|
223
|
-
}
|
|
224
|
-
]
|
|
225
|
-
|
|
226
|
-
prompt = renderer.build_generation_prompt(messages)
|
|
227
|
-
```
|
|
228
|
-
|
|
229
|
-
## In Dataset Builders
|
|
230
|
-
|
|
231
|
-
`ChatDatasetBuilder` creates renderer automatically:
|
|
232
|
-
|
|
233
|
-
```python
|
|
234
|
-
@chz.chz
|
|
235
|
-
class MyDatasetBuilder(ChatDatasetBuilder):
|
|
236
|
-
common_config: ChatDatasetBuilderCommonConfig
|
|
237
|
-
|
|
238
|
-
def __call__(self):
|
|
239
|
-
def map_fn(row):
|
|
240
|
-
return conversation_to_datum(
|
|
241
|
-
messages=messages,
|
|
242
|
-
renderer=self.renderer, # Auto-created from common_config
|
|
243
|
-
max_length=self.common_config.max_length,
|
|
244
|
-
train_on_what=self.common_config.train_on_what,
|
|
245
|
-
)
|
|
246
|
-
# ...
|
|
247
|
-
```
|
|
248
|
-
|
|
249
|
-
## Troubleshooting
|
|
250
|
-
|
|
251
|
-
**Wrong format:** Use `get_recommended_renderer_name(model_name)`
|
|
252
|
-
|
|
253
|
-
**High loss:** Check weights (0.0 for prompts, 1.0 for completions)
|
|
254
|
-
|
|
255
|
-
**Generation doesn't stop:** Use `renderer.get_stop_sequences()` in SamplingParams
|