@synsci/cli-darwin-x64 1.1.97 → 1.1.99

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1549) hide show
  1. package/bin/synsc +0 -0
  2. package/package.json +1 -1
  3. package/bin/skills/accelerate/SKILL.md +0 -332
  4. package/bin/skills/accelerate/references/custom-plugins.md +0 -453
  5. package/bin/skills/accelerate/references/megatron-integration.md +0 -489
  6. package/bin/skills/accelerate/references/performance.md +0 -525
  7. package/bin/skills/adaptyv/SKILL.md +0 -114
  8. package/bin/skills/adaptyv/reference/api_reference.md +0 -308
  9. package/bin/skills/adaptyv/reference/examples.md +0 -913
  10. package/bin/skills/adaptyv/reference/experiments.md +0 -360
  11. package/bin/skills/adaptyv/reference/protein_optimization.md +0 -637
  12. package/bin/skills/aeon/SKILL.md +0 -374
  13. package/bin/skills/aeon/references/anomaly_detection.md +0 -154
  14. package/bin/skills/aeon/references/classification.md +0 -144
  15. package/bin/skills/aeon/references/clustering.md +0 -123
  16. package/bin/skills/aeon/references/datasets_benchmarking.md +0 -387
  17. package/bin/skills/aeon/references/distances.md +0 -256
  18. package/bin/skills/aeon/references/forecasting.md +0 -140
  19. package/bin/skills/aeon/references/networks.md +0 -289
  20. package/bin/skills/aeon/references/regression.md +0 -118
  21. package/bin/skills/aeon/references/segmentation.md +0 -163
  22. package/bin/skills/aeon/references/similarity_search.md +0 -187
  23. package/bin/skills/aeon/references/transformations.md +0 -246
  24. package/bin/skills/alphafold-database/SKILL.md +0 -513
  25. package/bin/skills/alphafold-database/references/api_reference.md +0 -423
  26. package/bin/skills/anndata/SKILL.md +0 -400
  27. package/bin/skills/anndata/references/best_practices.md +0 -525
  28. package/bin/skills/anndata/references/concatenation.md +0 -396
  29. package/bin/skills/anndata/references/data_structure.md +0 -314
  30. package/bin/skills/anndata/references/io_operations.md +0 -404
  31. package/bin/skills/anndata/references/manipulation.md +0 -516
  32. package/bin/skills/arboreto/SKILL.md +0 -243
  33. package/bin/skills/arboreto/references/algorithms.md +0 -138
  34. package/bin/skills/arboreto/references/basic_inference.md +0 -151
  35. package/bin/skills/arboreto/references/distributed_computing.md +0 -242
  36. package/bin/skills/arboreto/scripts/basic_grn_inference.py +0 -97
  37. package/bin/skills/astropy/SKILL.md +0 -331
  38. package/bin/skills/astropy/references/coordinates.md +0 -273
  39. package/bin/skills/astropy/references/cosmology.md +0 -307
  40. package/bin/skills/astropy/references/fits.md +0 -396
  41. package/bin/skills/astropy/references/tables.md +0 -489
  42. package/bin/skills/astropy/references/time.md +0 -404
  43. package/bin/skills/astropy/references/units.md +0 -178
  44. package/bin/skills/astropy/references/wcs_and_other_modules.md +0 -373
  45. package/bin/skills/audiocraft/SKILL.md +0 -564
  46. package/bin/skills/audiocraft/references/advanced-usage.md +0 -666
  47. package/bin/skills/audiocraft/references/troubleshooting.md +0 -504
  48. package/bin/skills/autogpt/SKILL.md +0 -403
  49. package/bin/skills/autogpt/references/advanced-usage.md +0 -535
  50. package/bin/skills/autogpt/references/troubleshooting.md +0 -420
  51. package/bin/skills/awq/SKILL.md +0 -310
  52. package/bin/skills/awq/references/advanced-usage.md +0 -324
  53. package/bin/skills/awq/references/troubleshooting.md +0 -344
  54. package/bin/skills/axolotl/SKILL.md +0 -158
  55. package/bin/skills/axolotl/references/api.md +0 -5548
  56. package/bin/skills/axolotl/references/dataset-formats.md +0 -1029
  57. package/bin/skills/axolotl/references/index.md +0 -15
  58. package/bin/skills/axolotl/references/other.md +0 -3563
  59. package/bin/skills/benchling-integration/SKILL.md +0 -480
  60. package/bin/skills/benchling-integration/references/api_endpoints.md +0 -883
  61. package/bin/skills/benchling-integration/references/authentication.md +0 -379
  62. package/bin/skills/benchling-integration/references/sdk_reference.md +0 -774
  63. package/bin/skills/bigcode-evaluation-harness/SKILL.md +0 -405
  64. package/bin/skills/bigcode-evaluation-harness/references/benchmarks.md +0 -393
  65. package/bin/skills/bigcode-evaluation-harness/references/custom-tasks.md +0 -424
  66. package/bin/skills/bigcode-evaluation-harness/references/issues.md +0 -394
  67. package/bin/skills/biopython/SKILL.md +0 -443
  68. package/bin/skills/biopython/references/advanced.md +0 -577
  69. package/bin/skills/biopython/references/alignment.md +0 -362
  70. package/bin/skills/biopython/references/blast.md +0 -455
  71. package/bin/skills/biopython/references/databases.md +0 -484
  72. package/bin/skills/biopython/references/phylogenetics.md +0 -566
  73. package/bin/skills/biopython/references/sequence_io.md +0 -285
  74. package/bin/skills/biopython/references/structure.md +0 -564
  75. package/bin/skills/biorxiv-database/SKILL.md +0 -483
  76. package/bin/skills/biorxiv-database/references/api_reference.md +0 -280
  77. package/bin/skills/biorxiv-database/scripts/biorxiv_search.py +0 -445
  78. package/bin/skills/bioservices/SKILL.md +0 -361
  79. package/bin/skills/bioservices/references/identifier_mapping.md +0 -685
  80. package/bin/skills/bioservices/references/services_reference.md +0 -636
  81. package/bin/skills/bioservices/references/workflow_patterns.md +0 -811
  82. package/bin/skills/bioservices/scripts/batch_id_converter.py +0 -347
  83. package/bin/skills/bioservices/scripts/compound_cross_reference.py +0 -378
  84. package/bin/skills/bioservices/scripts/pathway_analysis.py +0 -309
  85. package/bin/skills/bioservices/scripts/protein_analysis_workflow.py +0 -408
  86. package/bin/skills/bitsandbytes/SKILL.md +0 -411
  87. package/bin/skills/bitsandbytes/references/memory-optimization.md +0 -521
  88. package/bin/skills/bitsandbytes/references/qlora-training.md +0 -521
  89. package/bin/skills/bitsandbytes/references/quantization-formats.md +0 -447
  90. package/bin/skills/blip-2/SKILL.md +0 -564
  91. package/bin/skills/blip-2/references/advanced-usage.md +0 -680
  92. package/bin/skills/blip-2/references/troubleshooting.md +0 -526
  93. package/bin/skills/brenda-database/SKILL.md +0 -719
  94. package/bin/skills/brenda-database/references/api_reference.md +0 -537
  95. package/bin/skills/brenda-database/scripts/brenda_queries.py +0 -844
  96. package/bin/skills/brenda-database/scripts/brenda_visualization.py +0 -772
  97. package/bin/skills/brenda-database/scripts/enzyme_pathway_builder.py +0 -1053
  98. package/bin/skills/cellxgene-census/SKILL.md +0 -511
  99. package/bin/skills/cellxgene-census/references/census_schema.md +0 -182
  100. package/bin/skills/cellxgene-census/references/common_patterns.md +0 -351
  101. package/bin/skills/chembl-database/SKILL.md +0 -389
  102. package/bin/skills/chembl-database/references/api_reference.md +0 -272
  103. package/bin/skills/chembl-database/scripts/example_queries.py +0 -278
  104. package/bin/skills/chroma/SKILL.md +0 -406
  105. package/bin/skills/chroma/references/integration.md +0 -38
  106. package/bin/skills/cirq/SKILL.md +0 -346
  107. package/bin/skills/cirq/references/building.md +0 -307
  108. package/bin/skills/cirq/references/experiments.md +0 -572
  109. package/bin/skills/cirq/references/hardware.md +0 -515
  110. package/bin/skills/cirq/references/noise.md +0 -515
  111. package/bin/skills/cirq/references/simulation.md +0 -350
  112. package/bin/skills/cirq/references/transformation.md +0 -416
  113. package/bin/skills/citation-management/SKILL.md +0 -1109
  114. package/bin/skills/citation-management/assets/bibtex_template.bib +0 -264
  115. package/bin/skills/citation-management/assets/citation_checklist.md +0 -386
  116. package/bin/skills/citation-management/references/bibtex_formatting.md +0 -908
  117. package/bin/skills/citation-management/references/citation_validation.md +0 -794
  118. package/bin/skills/citation-management/references/google_scholar_search.md +0 -725
  119. package/bin/skills/citation-management/references/metadata_extraction.md +0 -870
  120. package/bin/skills/citation-management/references/pubmed_search.md +0 -839
  121. package/bin/skills/citation-management/scripts/doi_to_bibtex.py +0 -182
  122. package/bin/skills/citation-management/scripts/extract_metadata.py +0 -570
  123. package/bin/skills/citation-management/scripts/format_bibtex.py +0 -349
  124. package/bin/skills/citation-management/scripts/search_google_scholar.py +0 -251
  125. package/bin/skills/citation-management/scripts/search_pubmed.py +0 -348
  126. package/bin/skills/citation-management/scripts/validate_citations.py +0 -494
  127. package/bin/skills/clinical-decision-support/README.md +0 -129
  128. package/bin/skills/clinical-decision-support/SKILL.md +0 -506
  129. package/bin/skills/clinical-decision-support/assets/biomarker_report_template.tex +0 -380
  130. package/bin/skills/clinical-decision-support/assets/clinical_pathway_template.tex +0 -222
  131. package/bin/skills/clinical-decision-support/assets/cohort_analysis_template.tex +0 -359
  132. package/bin/skills/clinical-decision-support/assets/color_schemes.tex +0 -149
  133. package/bin/skills/clinical-decision-support/assets/example_gbm_cohort.md +0 -208
  134. package/bin/skills/clinical-decision-support/assets/recommendation_strength_guide.md +0 -328
  135. package/bin/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +0 -529
  136. package/bin/skills/clinical-decision-support/references/biomarker_classification.md +0 -719
  137. package/bin/skills/clinical-decision-support/references/clinical_decision_algorithms.md +0 -604
  138. package/bin/skills/clinical-decision-support/references/evidence_synthesis.md +0 -840
  139. package/bin/skills/clinical-decision-support/references/outcome_analysis.md +0 -640
  140. package/bin/skills/clinical-decision-support/references/patient_cohort_analysis.md +0 -427
  141. package/bin/skills/clinical-decision-support/references/treatment_recommendations.md +0 -521
  142. package/bin/skills/clinical-decision-support/scripts/biomarker_classifier.py +0 -383
  143. package/bin/skills/clinical-decision-support/scripts/build_decision_tree.py +0 -417
  144. package/bin/skills/clinical-decision-support/scripts/create_cohort_tables.py +0 -509
  145. package/bin/skills/clinical-decision-support/scripts/generate_survival_analysis.py +0 -441
  146. package/bin/skills/clinical-decision-support/scripts/validate_cds_document.py +0 -326
  147. package/bin/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +0 -641
  148. package/bin/skills/clinical-reports/README.md +0 -236
  149. package/bin/skills/clinical-reports/SKILL.md +0 -1127
  150. package/bin/skills/clinical-reports/assets/case_report_template.md +0 -352
  151. package/bin/skills/clinical-reports/assets/clinical_trial_csr_template.md +0 -353
  152. package/bin/skills/clinical-reports/assets/clinical_trial_sae_template.md +0 -359
  153. package/bin/skills/clinical-reports/assets/consult_note_template.md +0 -305
  154. package/bin/skills/clinical-reports/assets/discharge_summary_template.md +0 -453
  155. package/bin/skills/clinical-reports/assets/hipaa_compliance_checklist.md +0 -395
  156. package/bin/skills/clinical-reports/assets/history_physical_template.md +0 -305
  157. package/bin/skills/clinical-reports/assets/lab_report_template.md +0 -309
  158. package/bin/skills/clinical-reports/assets/pathology_report_template.md +0 -249
  159. package/bin/skills/clinical-reports/assets/quality_checklist.md +0 -338
  160. package/bin/skills/clinical-reports/assets/radiology_report_template.md +0 -318
  161. package/bin/skills/clinical-reports/assets/soap_note_template.md +0 -253
  162. package/bin/skills/clinical-reports/references/case_report_guidelines.md +0 -570
  163. package/bin/skills/clinical-reports/references/clinical_trial_reporting.md +0 -693
  164. package/bin/skills/clinical-reports/references/data_presentation.md +0 -530
  165. package/bin/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -629
  166. package/bin/skills/clinical-reports/references/medical_terminology.md +0 -588
  167. package/bin/skills/clinical-reports/references/patient_documentation.md +0 -744
  168. package/bin/skills/clinical-reports/references/peer_review_standards.md +0 -585
  169. package/bin/skills/clinical-reports/references/regulatory_compliance.md +0 -577
  170. package/bin/skills/clinical-reports/scripts/check_deidentification.py +0 -332
  171. package/bin/skills/clinical-reports/scripts/compliance_checker.py +0 -78
  172. package/bin/skills/clinical-reports/scripts/extract_clinical_data.py +0 -97
  173. package/bin/skills/clinical-reports/scripts/format_adverse_events.py +0 -97
  174. package/bin/skills/clinical-reports/scripts/generate_report_template.py +0 -149
  175. package/bin/skills/clinical-reports/scripts/terminology_validator.py +0 -126
  176. package/bin/skills/clinical-reports/scripts/validate_case_report.py +0 -323
  177. package/bin/skills/clinical-reports/scripts/validate_trial_report.py +0 -88
  178. package/bin/skills/clinicaltrials-database/SKILL.md +0 -507
  179. package/bin/skills/clinicaltrials-database/references/api_reference.md +0 -358
  180. package/bin/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +0 -215
  181. package/bin/skills/clinpgx-database/SKILL.md +0 -638
  182. package/bin/skills/clinpgx-database/references/api_reference.md +0 -757
  183. package/bin/skills/clinpgx-database/scripts/query_clinpgx.py +0 -518
  184. package/bin/skills/clinvar-database/SKILL.md +0 -362
  185. package/bin/skills/clinvar-database/references/api_reference.md +0 -227
  186. package/bin/skills/clinvar-database/references/clinical_significance.md +0 -218
  187. package/bin/skills/clinvar-database/references/data_formats.md +0 -358
  188. package/bin/skills/clip/SKILL.md +0 -253
  189. package/bin/skills/clip/references/applications.md +0 -207
  190. package/bin/skills/cobrapy/SKILL.md +0 -463
  191. package/bin/skills/cobrapy/references/api_quick_reference.md +0 -655
  192. package/bin/skills/cobrapy/references/workflows.md +0 -593
  193. package/bin/skills/colab-finetuning/SKILL.md +0 -153
  194. package/bin/skills/colab-finetuning/references/bridge-setup.md +0 -68
  195. package/bin/skills/colab-finetuning/references/gpu-tiers.md +0 -54
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  197. package/bin/skills/constitutional-ai/SKILL.md +0 -290
  198. package/bin/skills/cosmic-database/SKILL.md +0 -336
  199. package/bin/skills/cosmic-database/references/cosmic_data_reference.md +0 -220
  200. package/bin/skills/cosmic-database/scripts/download_cosmic.py +0 -231
  201. package/bin/skills/crewai/SKILL.md +0 -498
  202. package/bin/skills/crewai/references/flows.md +0 -438
  203. package/bin/skills/crewai/references/tools.md +0 -429
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  205. package/bin/skills/dask/SKILL.md +0 -456
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  209. package/bin/skills/dask/references/dataframes.md +0 -368
  210. package/bin/skills/dask/references/futures.md +0 -541
  211. package/bin/skills/dask/references/schedulers.md +0 -504
  212. package/bin/skills/datacommons-client/SKILL.md +0 -255
  213. package/bin/skills/datacommons-client/references/getting_started.md +0 -417
  214. package/bin/skills/datacommons-client/references/node.md +0 -250
  215. package/bin/skills/datacommons-client/references/observation.md +0 -185
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  217. package/bin/skills/datamol/SKILL.md +0 -706
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  224. package/bin/skills/deepchem/SKILL.md +0 -597
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  227. package/bin/skills/deepchem/scripts/graph_neural_network.py +0 -338
  228. package/bin/skills/deepchem/scripts/predict_solubility.py +0 -224
  229. package/bin/skills/deepchem/scripts/transfer_learning.py +0 -375
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- \vskip 0.625in minus 0.125in%
123
- \centering%
124
- {\LARGE\bf \@title \par}%
125
- \vskip 0.1in plus 0.5fil minus 0.05in%
126
- {\Large{\textbf{\theauthors\ifhmode\\\fi}}}%
127
- \vskip .2em plus 0.25fil%
128
- {\normalsize \affiliations_\ifhmode\\\fi}%
129
- \vskip 1em plus 2fil%
130
- }%
131
- }%
132
- %
133
- \renewenvironment{abstract}{%
134
- \centerline{\bf Abstract}%
135
- \vspace{0.5ex}%
136
- \setlength{\leftmargini}{10pt}%
137
- \begin{quote}%
138
- \small%
139
- }{%
140
- \par%
141
- \end{quote}%
142
- \vskip 1ex%
143
- }%
144
- \newenvironment{links}{%
145
- \newcommand{\link}[2]{\par\textbf{##1} --- \url{##2}}%
146
- \setlength{\hangindent}{10pt}%
147
- \setlength{\parskip}{2pt}%
148
- \begin{flushleft}%
149
- }{%
150
- \end{flushleft}%
151
- \vskip 1ex%
152
- }%
153
- % jsp added:
154
- \def\pubnote#1{
155
- \thispagestyle{myheadings}%
156
- \pagestyle{myheadings}%
157
- \markboth{#1}{#1}%
158
- \setlength\headheight{10pt}%
159
- \setlength\headsep{10pt}%
160
- }%
161
- %
162
- % SECTIONS with less space
163
- \def\section{\@startsection {section}{1}{\z@}{-2.0ex plus
164
- -0.5ex minus -.2ex}{3pt plus 2pt minus 1pt}{\Large\bf\centering}}
165
- \def\subsection{\@startsection{subsection}{2}{\z@}{-2.0ex plus
166
- -0.5ex minus -.2ex}{3pt plus 2pt minus 1pt}{\large\bf\raggedright}}
167
- \def\subsubsection{\@startsection{subparagraph}{3}{\z@}{-6pt plus
168
- %%% DIEGO changed: 29/11/2009
169
- %% 2pt minus 1pt}{-1em}{\normalsize\bf}}
170
- -2pt minus -1pt}{-1em}{\normalsize\bf}}
171
- %%% END changed
172
- \renewcommand\paragraph{\@startsection{paragraph}{4}{\z@}{-6pt plus -2pt minus -1pt}{-1em}{\normalsize\bf}}%
173
- \setcounter{secnumdepth}{0}
174
- % add period to section (but not subsection) numbers, reduce space after
175
- %\renewcommand{\thesection}
176
- % {\arabic{section}.\hskip-0.6em}
177
- %\renewcommand{\thesubsection}
178
- % {\arabic{section}.\arabic{subsection}\hskip-0.6em}
179
- % FOOTNOTES
180
- \footnotesep 6.65pt %
181
- \skip\footins 9pt plus 4pt minus 2pt
182
- \def\footnoterule{\kern-3pt \hrule width 5pc \kern 2.6pt }
183
- \setcounter{footnote}{0}
184
- % LISTS AND PARAGRAPHS
185
- \parindent 10pt
186
- \topsep 4pt plus 1pt minus 2pt
187
- \partopsep 1pt plus 0.5pt minus 0.5pt
188
- \itemsep 0.5pt plus 1pt minus 0.5pt
189
- \parsep 2pt plus 1pt minus 0.5pt
190
- \leftmargin 10pt \leftmargini 13pt \leftmarginii 10pt \leftmarginiii 5pt \leftmarginiv 5pt \leftmarginv 5pt \leftmarginvi 5pt
191
- \labelwidth\leftmargini\advance\labelwidth-\labelsep \labelsep 5pt
192
- \def\@listi{\leftmargin\leftmargini}
193
- \def\@listii{\leftmargin\leftmarginii
194
- \labelwidth\leftmarginii\advance\labelwidth-\labelsep
195
- \topsep 2pt plus 1pt minus 0.5pt
196
- \parsep 1pt plus 0.5pt minus 0.5pt
197
- \itemsep \parsep}
198
- \def\@listiii{\leftmargin\leftmarginiii
199
- \labelwidth\leftmarginiii\advance\labelwidth-\labelsep
200
- \topsep 1pt plus 0.5pt minus 0.5pt
201
- \parsep \z@
202
- \partopsep 0.5pt plus 0pt minus 0.5pt
203
- \itemsep \topsep}
204
- \def\@listiv{\leftmargin\leftmarginiv
205
- \labelwidth\leftmarginiv\advance\labelwidth-\labelsep}
206
- \def\@listv{\leftmargin\leftmarginv
207
- \labelwidth\leftmarginv\advance\labelwidth-\labelsep}
208
- \def\@listvi{\leftmargin\leftmarginvi
209
- \labelwidth\leftmarginvi\advance\labelwidth-\labelsep}
210
- \abovedisplayskip 7pt plus2pt minus5pt%
211
- \belowdisplayskip \abovedisplayskip
212
- \abovedisplayshortskip 0pt plus3pt%
213
- \belowdisplayshortskip 4pt plus3pt minus3pt%
214
- % Less leading in most fonts (due to the narrow columns)
215
- % The choices were between 1-pt and 1.5-pt leading
216
- \def\normalsize{\@setfontsize\normalsize\@xpt{11}} % 10 point on 11
217
- \def\small{\@setfontsize\small\@ixpt{10}} % 9 point on 10
218
- \def\footnotesize{\@setfontsize\footnotesize\@ixpt{10}} % 9 point on 10
219
- \def\scriptsize{\@setfontsize\scriptsize\@viipt{10}} % 7 point on 8
220
- \def\tiny{\@setfontsize\tiny\@vipt{7}} % 6 point on 7
221
- \def\large{\@setfontsize\large\@xipt{12}} % 11 point on 12
222
- \def\Large{\@setfontsize\Large\@xiipt{14}} % 12 point on 14
223
- \def\LARGE{\@setfontsize\LARGE\@xivpt{16}} % 14 point on 16
224
- \def\huge{\@setfontsize\huge\@xviipt{20}} % 17 point on 20
225
- \def\Huge{\@setfontsize\Huge\@xxpt{23}} % 20 point on 23
226
-
227
- \AtBeginDocument{%
228
- \@ifpackageloaded{natbib}%
229
- {%
230
- % When natbib is in use, set the proper style and fix a few things
231
- \let\cite\citep
232
- \let\shortcite\citeyearpar
233
- \setcitestyle{aysep={}}
234
- \setlength\bibhang{0pt}
235
- \bibliographystyle{aaai2026}
236
- }{}%
237
- \@ifpackageloaded{hyperref}%
238
- {%
239
- \PackageError{aaai}{You must not use hyperref in AAAI papers.}{You (or one of the packages you imported) are importing the hyperref package, which is forbidden in AAAI papers. You must remove it from the paper to proceed.}
240
- }{}%
241
- \@ifpackageloaded{bbm}%
242
- {%
243
- \PackageError{aaai}{You must not use bbm package in AAAI papers because it introduces Type 3 fonts which are forbidden.}{See https://tex.stackexchange.com/questions/479160/a-replacement-to-mathbbm1-with-type-1-fonts for possible alternatives.}
244
- }{}%
245
- \@ifpackageloaded{authblk}%
246
- {%
247
- \PackageError{aaai}{Package authblk is forbbidden.}{Package authblk is forbbiden. You must find an alternative.}
248
- }{}%
249
- \@ifpackageloaded{balance}%
250
- {%
251
- \PackageError{aaai}{Package balance is forbbidden.}{Package balance is forbbiden. You must find an alternative.}
252
- }{}%
253
- \@ifpackageloaded{CJK}%
254
- {%
255
- \PackageError{aaai}{Package CJK is forbbidden.}{Package CJK is forbbiden. You must find an alternative.}
256
- }{}%
257
- \@ifpackageloaded{flushend}%
258
- {%
259
- \PackageError{aaai}{Package flushend is forbbidden.}{Package flushend is forbbiden. You must find an alternative.}
260
- }{}%
261
- \@ifpackageloaded{fontenc}%
262
- {%
263
- \PackageError{aaai}{Package fontenc is forbbidden.}{Package fontenc is forbbiden. You must find an alternative.}
264
- }{}%
265
- \@ifpackageloaded{fullpage}%
266
- {%
267
- \PackageError{aaai}{Package fullpage is forbbidden.}{Package fullpage is forbbiden. You must find an alternative.}
268
- }{}%
269
- \@ifpackageloaded{geometry}%
270
- {%
271
- \PackageError{aaai}{Package geometry is forbbidden.}{Package geometry is forbbiden. You must find an alternative.}
272
- }{}%
273
- \@ifpackageloaded{grffile}%
274
- {%
275
- \PackageError{aaai}{Package grffile is forbbidden.}{Package grffile is forbbiden. You must find an alternative.}
276
- }{}%
277
- \@ifpackageloaded{navigator}%
278
- {%
279
- \PackageError{aaai}{Package navigator is forbbidden.}{Package navigator is forbbiden. You must find an alternative.}
280
- }{}%
281
- \@ifpackageloaded{savetrees}%
282
- {%
283
- \PackageError{aaai}{Package savetrees is forbbidden.}{Package savetrees is forbbiden. You must find an alternative.}
284
- }{}%
285
- \@ifpackageloaded{setspace}%
286
- {%
287
- \PackageError{aaai}{Package setspace is forbbidden.}{Package setspace is forbbiden. You must find an alternative.}
288
- }{}%
289
- \@ifpackageloaded{stfloats}%
290
- {%
291
- \PackageError{aaai}{Package stfloats is forbbidden.}{Package stfloats is forbbiden. You must find an alternative.}
292
- }{}%
293
- \@ifpackageloaded{tabu}%
294
- {%
295
- \PackageError{aaai}{Package tabu is forbbidden.}{Package tabu is forbbiden. You must find an alternative.}
296
- }{}%
297
- \@ifpackageloaded{titlesec}%
298
- {%
299
- \PackageError{aaai}{Package titlesec is forbbidden.}{Package titlesec is forbbiden. You must find an alternative.}
300
- }{}%
301
- \@ifpackageloaded{tocbibind}%
302
- {%
303
- \PackageError{aaai}{Package tocbibind is forbbidden.}{Package tocbibind is forbbiden. You must find an alternative.}
304
- }{}%
305
- \@ifpackageloaded{ulem}%
306
- {%
307
- \PackageError{aaai}{Package ulem is forbbidden.}{Package ulem is forbbiden. You must find an alternative.}
308
- }{}%
309
- \@ifpackageloaded{wrapfig}%
310
- {%
311
- \PackageError{aaai}{Package wrapfig is forbbidden.}{Package wrapfig is forbbiden. You must find an alternative.}
312
- }{}%
313
- }
314
-
315
- \let\endthebibliography=\endlist
@@ -1,50 +0,0 @@
1
- # *ACL Paper Styles
2
-
3
- This directory contains the latest LaTeX templates for *ACL conferences.
4
-
5
- ## Instructions for authors
6
-
7
- Paper submissions to *ACL conferences must use the official ACL style
8
- templates.
9
-
10
- The LaTeX style files are available
11
-
12
- - as an [Overleaf template](https://www.overleaf.com/latex/templates/association-for-computational-linguistics-acl-conference/jvxskxpnznfj)
13
- - in this repository
14
- - as a [.zip file](https://github.com/acl-org/acl-style-files/archive/refs/heads/master.zip)
15
-
16
- Please see [`acl_latex.tex`](https://github.com/acl-org/acl-style-files/blob/master/acl_latex.tex) for an example.
17
-
18
- Please follow the paper formatting guidelines general to *ACL
19
- conferences:
20
-
21
- - [Paper formatting guidelines](https://acl-org.github.io/ACLPUB/formatting.html)
22
-
23
- Authors may not modify these style files or use templates designed for
24
- other conferences.
25
-
26
- ## Instructions for publications chairs
27
-
28
- To adapt the style files for your conference, please fork this repository and
29
- make necessary changes. Minimally, you'll need to update the name of
30
- the conference and rename the files.
31
-
32
- If you make improvements to the templates that should be propagated to
33
- future conferences, please submit a pull request. Thank you in
34
- advance!
35
-
36
- In older versions of the templates, authors were asked to fill in the
37
- START submission ID so that it would be stamped at the top of each
38
- page of the anonymized version. This is no longer needed, because it
39
- is now possible to do this stamping automatically within
40
- START. Currently, the way to do this is for the program chair to email
41
- support@softconf.com and request it.
42
-
43
- ## Instructions for making changes to style files
44
-
45
- - merge pull request in github, or push to github
46
- - git pull from github to a local repository
47
- - then, git push from your local repository to overleaf project
48
- - Overleaf project is https://www.overleaf.com/project/5f64f1fb97c4c50001b60549
49
- - Overleaf git url is https://git.overleaf.com/5f64f1fb97c4c50001b60549
50
- - then, click "Submit" and then "Submit as Template" in overleaf in order to ask overleaf to update the overleaf template from the overleaf project
@@ -1,312 +0,0 @@
1
- % This is the LaTex style file for *ACL.
2
- % The official sources can be found at
3
- %
4
- % https://github.com/acl-org/acl-style-files/
5
- %
6
- % This package is activated by adding
7
- %
8
- % \usepackage{acl}
9
- %
10
- % to your LaTeX file. When submitting your paper for review, add the "review" option:
11
- %
12
- % \usepackage[review]{acl}
13
-
14
- \newif\ifacl@finalcopy
15
- \newif\ifacl@anonymize
16
- \newif\ifacl@linenumbers
17
- \newif\ifacl@pagenumbers
18
- \DeclareOption{final}{\acl@finalcopytrue\acl@anonymizefalse\acl@linenumbersfalse\acl@pagenumbersfalse}
19
- \DeclareOption{review}{\acl@finalcopyfalse\acl@anonymizetrue\acl@linenumberstrue\acl@pagenumberstrue}
20
- \DeclareOption{preprint}{\acl@finalcopytrue\acl@anonymizefalse\acl@linenumbersfalse\acl@pagenumberstrue}
21
- \ExecuteOptions{final} % final copy is the default
22
-
23
- % include hyperref, unless user specifies nohyperref option like this:
24
- % \usepackage[nohyperref]{acl}
25
- \newif\ifacl@hyperref
26
- \DeclareOption{hyperref}{\acl@hyperreftrue}
27
- \DeclareOption{nohyperref}{\acl@hyperreffalse}
28
- \ExecuteOptions{hyperref} % default is to use hyperref
29
- \ProcessOptions\relax
30
-
31
- \typeout{Conference Style for ACL}
32
-
33
- \usepackage{xcolor}
34
-
35
- \ifacl@linenumbers
36
- % Add draft line numbering via the lineno package
37
- % https://texblog.org/2012/02/08/adding-line-numbers-to-documents/
38
- \usepackage[switch,mathlines]{lineno}
39
-
40
- % Line numbers in gray Helvetica 8pt
41
- \font\aclhv = phvb at 8pt
42
- \renewcommand\linenumberfont{\aclhv\color{lightgray}}
43
-
44
- % Zero-fill line numbers
45
- % NUMBER with left flushed zeros \fillzeros[<WIDTH>]<NUMBER>
46
- \newcount\cv@tmpc@ \newcount\cv@tmpc
47
- \def\fillzeros[#1]#2{\cv@tmpc@=#2\relax\ifnum\cv@tmpc@<0\cv@tmpc@=-\cv@tmpc@\fi
48
- \cv@tmpc=1 %
49
- \loop\ifnum\cv@tmpc@<10 \else \divide\cv@tmpc@ by 10 \advance\cv@tmpc by 1 \fi
50
- \ifnum\cv@tmpc@=10\relax\cv@tmpc@=11\relax\fi \ifnum\cv@tmpc@>10 \repeat
51
- \ifnum#2<0\advance\cv@tmpc1\relax-\fi
52
- \loop\ifnum\cv@tmpc<#1\relax0\advance\cv@tmpc1\relax\fi \ifnum\cv@tmpc<#1 \repeat
53
- \cv@tmpc@=#2\relax\ifnum\cv@tmpc@<0\cv@tmpc@=-\cv@tmpc@\fi \relax\the\cv@tmpc@}%
54
- \renewcommand\thelinenumber{\fillzeros[3]{\arabic{linenumber}}}
55
- \AtBeginDocument{\linenumbers}
56
-
57
- \setlength{\linenumbersep}{1.6cm}
58
-
59
- % Bug: An equation with $$ ... $$ isn't numbered, nor is the previous line.
60
-
61
- % Patch amsmath commands so that the previous line and the equation itself
62
- % are numbered. Bug: multline has an extra line number.
63
- % https://tex.stackexchange.com/questions/461186/how-to-use-lineno-with-amsmath-align
64
- \usepackage{etoolbox} %% <- for \pretocmd, \apptocmd and \patchcmd
65
-
66
- \newcommand*\linenomathpatch[1]{%
67
- \expandafter\pretocmd\csname #1\endcsname {\linenomath}{}{}%
68
- \expandafter\pretocmd\csname #1*\endcsname {\linenomath}{}{}%
69
- \expandafter\apptocmd\csname end#1\endcsname {\endlinenomath}{}{}%
70
- \expandafter\apptocmd\csname end#1*\endcsname {\endlinenomath}{}{}%
71
- }
72
- \newcommand*\linenomathpatchAMS[1]{%
73
- \expandafter\pretocmd\csname #1\endcsname {\linenomathAMS}{}{}%
74
- \expandafter\pretocmd\csname #1*\endcsname {\linenomathAMS}{}{}%
75
- \expandafter\apptocmd\csname end#1\endcsname {\endlinenomath}{}{}%
76
- \expandafter\apptocmd\csname end#1*\endcsname {\endlinenomath}{}{}%
77
- }
78
-
79
- %% Definition of \linenomathAMS depends on whether the mathlines option is provided
80
- \expandafter\ifx\linenomath\linenomathWithnumbers
81
- \let\linenomathAMS\linenomathWithnumbers
82
- %% The following line gets rid of an extra line numbers at the bottom:
83
- \patchcmd\linenomathAMS{\advance\postdisplaypenalty\linenopenalty}{}{}{}
84
- \else
85
- \let\linenomathAMS\linenomathNonumbers
86
- \fi
87
-
88
- \AtBeginDocument{%
89
- \linenomathpatch{equation}%
90
- \linenomathpatchAMS{gather}%
91
- \linenomathpatchAMS{multline}%
92
- \linenomathpatchAMS{align}%
93
- \linenomathpatchAMS{alignat}%
94
- \linenomathpatchAMS{flalign}%
95
- }
96
- \else
97
- % Hack to ignore these commands, which review mode puts into the .aux file.
98
- \newcommand{\@LN@col}[1]{}
99
- \newcommand{\@LN}[2]{}
100
- \newcommand{\nolinenumbers}{}
101
- \fi
102
-
103
- \PassOptionsToPackage{a4paper,margin=2.5cm,heightrounded=true}{geometry}
104
- \RequirePackage{geometry}
105
-
106
- \setlength\columnsep{0.6cm}
107
- \newlength\titlebox
108
- \setlength\titlebox{11\baselineskip}
109
- % \titlebox should be a multiple of \baselineskip so that
110
- % column height remaining fits an exact number of lines of text
111
-
112
- \flushbottom \twocolumn \sloppy
113
-
114
- % We're never going to need a table of contents, so just flush it to
115
- % save space --- suggested by drstrip@sandia-2
116
- \def\addcontentsline#1#2#3{}
117
-
118
- \ifacl@pagenumbers
119
- \pagenumbering{arabic}
120
- \else
121
- \thispagestyle{empty}
122
- \pagestyle{empty}
123
- \fi
124
-
125
- %% Title and Authors %%
126
-
127
- \let\Thanks\thanks % \Thanks and \thanks used to be different, but keep this for backwards compatibility.
128
-
129
- \newcommand\outauthor{%
130
- \begin{tabular}[t]{c}
131
- \ifacl@anonymize
132
- \bfseries Anonymous ACL submission
133
- \else
134
- \bfseries\@author
135
- \fi
136
- \end{tabular}}
137
-
138
- % Mostly taken from deproc.
139
- \AtBeginDocument{
140
- \def\maketitle{\par
141
- \begingroup
142
- \def\thefootnote{\fnsymbol{footnote}}
143
- \twocolumn[\@maketitle]
144
- \@thanks
145
- \endgroup
146
- \setcounter{footnote}{0}
147
- \let\maketitle\relax
148
- \let\@maketitle\relax
149
- \gdef\@thanks{}\gdef\@author{}\gdef\@title{}\let\thanks\relax}
150
- \def\@maketitle{\vbox to \titlebox{\hsize\textwidth
151
- \linewidth\hsize \vskip 0.125in minus 0.125in \centering
152
- {\Large\bfseries \@title \par} \vskip 0.2in plus 1fil minus 0.1in
153
- {\def\and{\unskip\enspace{\rmfamily and}\enspace}%
154
- \def\And{\end{tabular}\hss \egroup \hskip 1in plus 2fil
155
- \hbox to 0pt\bgroup\hss \begin{tabular}[t]{c}\bfseries}%
156
- \def\AND{\end{tabular}\hss\egroup \hfil\hfil\egroup
157
- \vskip 0.25in plus 1fil minus 0.125in
158
- \hbox to \linewidth\bgroup\large \hfil\hfil
159
- \hbox to 0pt\bgroup\hss \begin{tabular}[t]{c}\bfseries}
160
- \hbox to \linewidth\bgroup\large \hfil\hfil
161
- \hbox to 0pt\bgroup\hss
162
- \outauthor
163
- \hss\egroup
164
- \hfil\hfil\egroup}
165
- \vskip 0.3in plus 2fil minus 0.1in
166
- }}
167
- }
168
-
169
- % margins and font size for abstract
170
- \renewenvironment{abstract}%
171
- {\begin{center}\large\textbf{\abstractname}\end{center}%
172
- \begin{list}{}%
173
- {\setlength{\rightmargin}{0.6cm}%
174
- \setlength{\leftmargin}{0.6cm}}%
175
- \item[]\ignorespaces%
176
- \@setsize\normalsize{12pt}\xpt\@xpt
177
- }%
178
- {\unskip\end{list}}
179
-
180
- % Resizing figure and table captions - SL
181
- % Support for interacting with the caption, subfigure, and subcaption packages - SL
182
- \RequirePackage{caption}
183
- \DeclareCaptionFont{10pt}{\fontsize{10pt}{12pt}\selectfont}
184
- \captionsetup{font=10pt}
185
-
186
- \RequirePackage{natbib}
187
- % for citation commands in the .tex, authors can use:
188
- % \citep, \citet, and \citeyearpar for compatibility with natbib, or
189
- % \cite, \newcite, and \shortcite for compatibility with older ACL .sty files
190
- \renewcommand\cite{\citep} % to get "(Author Year)" with natbib
191
- \newcommand\shortcite{\citeyearpar}% to get "(Year)" with natbib
192
- \newcommand\newcite{\citet} % to get "Author (Year)" with natbib
193
- \newcommand{\citeposs}[1]{\citeauthor{#1}'s (\citeyear{#1})} % to get "Author's (Year)"
194
-
195
- \bibliographystyle{acl_natbib}
196
-
197
- % Bibliography
198
-
199
- % Don't put a label in the bibliography at all. Just use the unlabeled format
200
- % instead.
201
- \def\thebibliography#1{\vskip\parskip%
202
- \vskip\baselineskip%
203
- \def\baselinestretch{1}%
204
- \ifx\@currsize\normalsize\@normalsize\else\@currsize\fi%
205
- \vskip-\parskip%
206
- \vskip-\baselineskip%
207
- \section*{References\@mkboth
208
- {References}{References}}\list
209
- {}{\setlength{\labelwidth}{0pt}\setlength{\leftmargin}{\parindent}
210
- \setlength{\itemindent}{-\parindent}}
211
- \def\newblock{\hskip .11em plus .33em minus -.07em}
212
- \sloppy\clubpenalty4000\widowpenalty4000
213
- \sfcode`\.=1000\relax}
214
- \let\endthebibliography=\endlist
215
-
216
-
217
- % Allow for a bibliography of sources of attested examples
218
- \def\thesourcebibliography#1{\vskip\parskip%
219
- \vskip\baselineskip%
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- \def\baselinestretch{1}%
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- \ifx\@currsize\normalsize\@normalsize\else\@currsize\fi%
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- \vskip-\parskip%
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- \vskip-\baselineskip%
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- \section*{Sources of Attested Examples\@mkboth
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- {Sources of Attested Examples}{Sources of Attested Examples}}\list
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- {}{\setlength{\labelwidth}{0pt}\setlength{\leftmargin}{\parindent}
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- \setlength{\itemindent}{-\parindent}}
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- \def\newblock{\hskip .11em plus .33em minus -.07em}
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- \sloppy\clubpenalty4000\widowpenalty4000
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- \sfcode`\.=1000\relax}
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- \let\endthesourcebibliography=\endlist
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-
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- % sections with less space
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- \def\section{\@startsection {section}{1}{\z@}{-2.0ex plus
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- -0.5ex minus -.2ex}{1.5ex plus 0.3ex minus .2ex}{\large\bfseries\raggedright}}
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- \def\subsection{\@startsection{subsection}{2}{\z@}{-1.8ex plus
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- -0.5ex minus -.2ex}{0.8ex plus .2ex}{\normalsize\bfseries\raggedright}}
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- %% changed by KO to - values to get the initial parindent right
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- \def\subsubsection{\@startsection{subsubsection}{3}{\z@}{-1.5ex plus
240
- -0.5ex minus -.2ex}{0.5ex plus .2ex}{\normalsize\bfseries\raggedright}}
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- \def\paragraph{\@startsection{paragraph}{4}{\z@}{1.5ex plus
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- 0.5ex minus .2ex}{-1em}{\normalsize\bfseries}}
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- \def\subparagraph{\@startsection{subparagraph}{5}{\parindent}{1.5ex plus
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- 0.5ex minus .2ex}{-1em}{\normalsize\bfseries}}
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-
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- % Footnotes
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- \footnotesep 6.65pt %
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- \skip\footins 9pt plus 4pt minus 2pt
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- \def\footnoterule{\kern-3pt \hrule width 5pc \kern 2.6pt }
250
- \setcounter{footnote}{0}
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-
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- % Lists and paragraphs
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- \parindent 1em
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- \topsep 4pt plus 1pt minus 2pt
255
- \partopsep 1pt plus 0.5pt minus 0.5pt
256
- \itemsep 2pt plus 1pt minus 0.5pt
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- \parsep 2pt plus 1pt minus 0.5pt
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-
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- \leftmargin 2em \leftmargini\leftmargin \leftmarginii 2em
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- \leftmarginiii 1.5em \leftmarginiv 1.0em \leftmarginv .5em \leftmarginvi .5em
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- \labelwidth\leftmargini\advance\labelwidth-\labelsep \labelsep 5pt
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-
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- \def\@listi{\leftmargin\leftmargini}
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- \def\@listii{\leftmargin\leftmarginii
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- \labelwidth\leftmarginii\advance\labelwidth-\labelsep
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- \topsep 2pt plus 1pt minus 0.5pt
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- \parsep 1pt plus 0.5pt minus 0.5pt
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- \itemsep \parsep}
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- \def\@listiii{\leftmargin\leftmarginiii
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- \labelwidth\leftmarginiii\advance\labelwidth-\labelsep
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- \topsep 1pt plus 0.5pt minus 0.5pt
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- \parsep \z@ \partopsep 0.5pt plus 0pt minus 0.5pt
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- \itemsep \topsep}
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- \def\@listiv{\leftmargin\leftmarginiv
275
- \labelwidth\leftmarginiv\advance\labelwidth-\labelsep}
276
- \def\@listv{\leftmargin\leftmarginv
277
- \labelwidth\leftmarginv\advance\labelwidth-\labelsep}
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- \def\@listvi{\leftmargin\leftmarginvi
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- \labelwidth\leftmarginvi\advance\labelwidth-\labelsep}
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-
281
- \abovedisplayskip 7pt plus2pt minus5pt%
282
- \belowdisplayskip \abovedisplayskip
283
- \abovedisplayshortskip 0pt plus3pt%
284
- \belowdisplayshortskip 4pt plus3pt minus3pt%
285
-
286
- % Less leading in most fonts (due to the narrow columns)
287
- % The choices were between 1-pt and 1.5-pt leading
288
- \def\@normalsize{\@setsize\normalsize{11pt}\xpt\@xpt}
289
- \def\small{\@setsize\small{10pt}\ixpt\@ixpt}
290
- \def\footnotesize{\@setsize\footnotesize{10pt}\ixpt\@ixpt}
291
- \def\scriptsize{\@setsize\scriptsize{8pt}\viipt\@viipt}
292
- \def\tiny{\@setsize\tiny{7pt}\vipt\@vipt}
293
- \def\large{\@setsize\large{14pt}\xiipt\@xiipt}
294
- \def\Large{\@setsize\Large{16pt}\xivpt\@xivpt}
295
- \def\LARGE{\@setsize\LARGE{20pt}\xviipt\@xviipt}
296
- \def\huge{\@setsize\huge{23pt}\xxpt\@xxpt}
297
- \def\Huge{\@setsize\Huge{28pt}\xxvpt\@xxvpt}
298
-
299
- % The hyperref manual (section 9) says hyperref should be loaded after natbib
300
- \ifacl@hyperref
301
- \PassOptionsToPackage{breaklinks}{hyperref}
302
- \RequirePackage{hyperref}
303
- % make links dark blue
304
- \definecolor{darkblue}{rgb}{0, 0, 0.5}
305
- \hypersetup{colorlinks=true, citecolor=darkblue, linkcolor=darkblue, urlcolor=darkblue}
306
- \else
307
- % This definition is used if the hyperref package is not loaded.
308
- % It provides a backup, no-op definiton of \href.
309
- % This is necessary because \href command is used in the acl_natbib.bst file.
310
- \def\href#1#2{{#2}}
311
- \usepackage{url}
312
- \fi