@synsci/cli-darwin-x64 1.1.97 → 1.1.99

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1549) hide show
  1. package/bin/synsc +0 -0
  2. package/package.json +1 -1
  3. package/bin/skills/accelerate/SKILL.md +0 -332
  4. package/bin/skills/accelerate/references/custom-plugins.md +0 -453
  5. package/bin/skills/accelerate/references/megatron-integration.md +0 -489
  6. package/bin/skills/accelerate/references/performance.md +0 -525
  7. package/bin/skills/adaptyv/SKILL.md +0 -114
  8. package/bin/skills/adaptyv/reference/api_reference.md +0 -308
  9. package/bin/skills/adaptyv/reference/examples.md +0 -913
  10. package/bin/skills/adaptyv/reference/experiments.md +0 -360
  11. package/bin/skills/adaptyv/reference/protein_optimization.md +0 -637
  12. package/bin/skills/aeon/SKILL.md +0 -374
  13. package/bin/skills/aeon/references/anomaly_detection.md +0 -154
  14. package/bin/skills/aeon/references/classification.md +0 -144
  15. package/bin/skills/aeon/references/clustering.md +0 -123
  16. package/bin/skills/aeon/references/datasets_benchmarking.md +0 -387
  17. package/bin/skills/aeon/references/distances.md +0 -256
  18. package/bin/skills/aeon/references/forecasting.md +0 -140
  19. package/bin/skills/aeon/references/networks.md +0 -289
  20. package/bin/skills/aeon/references/regression.md +0 -118
  21. package/bin/skills/aeon/references/segmentation.md +0 -163
  22. package/bin/skills/aeon/references/similarity_search.md +0 -187
  23. package/bin/skills/aeon/references/transformations.md +0 -246
  24. package/bin/skills/alphafold-database/SKILL.md +0 -513
  25. package/bin/skills/alphafold-database/references/api_reference.md +0 -423
  26. package/bin/skills/anndata/SKILL.md +0 -400
  27. package/bin/skills/anndata/references/best_practices.md +0 -525
  28. package/bin/skills/anndata/references/concatenation.md +0 -396
  29. package/bin/skills/anndata/references/data_structure.md +0 -314
  30. package/bin/skills/anndata/references/io_operations.md +0 -404
  31. package/bin/skills/anndata/references/manipulation.md +0 -516
  32. package/bin/skills/arboreto/SKILL.md +0 -243
  33. package/bin/skills/arboreto/references/algorithms.md +0 -138
  34. package/bin/skills/arboreto/references/basic_inference.md +0 -151
  35. package/bin/skills/arboreto/references/distributed_computing.md +0 -242
  36. package/bin/skills/arboreto/scripts/basic_grn_inference.py +0 -97
  37. package/bin/skills/astropy/SKILL.md +0 -331
  38. package/bin/skills/astropy/references/coordinates.md +0 -273
  39. package/bin/skills/astropy/references/cosmology.md +0 -307
  40. package/bin/skills/astropy/references/fits.md +0 -396
  41. package/bin/skills/astropy/references/tables.md +0 -489
  42. package/bin/skills/astropy/references/time.md +0 -404
  43. package/bin/skills/astropy/references/units.md +0 -178
  44. package/bin/skills/astropy/references/wcs_and_other_modules.md +0 -373
  45. package/bin/skills/audiocraft/SKILL.md +0 -564
  46. package/bin/skills/audiocraft/references/advanced-usage.md +0 -666
  47. package/bin/skills/audiocraft/references/troubleshooting.md +0 -504
  48. package/bin/skills/autogpt/SKILL.md +0 -403
  49. package/bin/skills/autogpt/references/advanced-usage.md +0 -535
  50. package/bin/skills/autogpt/references/troubleshooting.md +0 -420
  51. package/bin/skills/awq/SKILL.md +0 -310
  52. package/bin/skills/awq/references/advanced-usage.md +0 -324
  53. package/bin/skills/awq/references/troubleshooting.md +0 -344
  54. package/bin/skills/axolotl/SKILL.md +0 -158
  55. package/bin/skills/axolotl/references/api.md +0 -5548
  56. package/bin/skills/axolotl/references/dataset-formats.md +0 -1029
  57. package/bin/skills/axolotl/references/index.md +0 -15
  58. package/bin/skills/axolotl/references/other.md +0 -3563
  59. package/bin/skills/benchling-integration/SKILL.md +0 -480
  60. package/bin/skills/benchling-integration/references/api_endpoints.md +0 -883
  61. package/bin/skills/benchling-integration/references/authentication.md +0 -379
  62. package/bin/skills/benchling-integration/references/sdk_reference.md +0 -774
  63. package/bin/skills/bigcode-evaluation-harness/SKILL.md +0 -405
  64. package/bin/skills/bigcode-evaluation-harness/references/benchmarks.md +0 -393
  65. package/bin/skills/bigcode-evaluation-harness/references/custom-tasks.md +0 -424
  66. package/bin/skills/bigcode-evaluation-harness/references/issues.md +0 -394
  67. package/bin/skills/biopython/SKILL.md +0 -443
  68. package/bin/skills/biopython/references/advanced.md +0 -577
  69. package/bin/skills/biopython/references/alignment.md +0 -362
  70. package/bin/skills/biopython/references/blast.md +0 -455
  71. package/bin/skills/biopython/references/databases.md +0 -484
  72. package/bin/skills/biopython/references/phylogenetics.md +0 -566
  73. package/bin/skills/biopython/references/sequence_io.md +0 -285
  74. package/bin/skills/biopython/references/structure.md +0 -564
  75. package/bin/skills/biorxiv-database/SKILL.md +0 -483
  76. package/bin/skills/biorxiv-database/references/api_reference.md +0 -280
  77. package/bin/skills/biorxiv-database/scripts/biorxiv_search.py +0 -445
  78. package/bin/skills/bioservices/SKILL.md +0 -361
  79. package/bin/skills/bioservices/references/identifier_mapping.md +0 -685
  80. package/bin/skills/bioservices/references/services_reference.md +0 -636
  81. package/bin/skills/bioservices/references/workflow_patterns.md +0 -811
  82. package/bin/skills/bioservices/scripts/batch_id_converter.py +0 -347
  83. package/bin/skills/bioservices/scripts/compound_cross_reference.py +0 -378
  84. package/bin/skills/bioservices/scripts/pathway_analysis.py +0 -309
  85. package/bin/skills/bioservices/scripts/protein_analysis_workflow.py +0 -408
  86. package/bin/skills/bitsandbytes/SKILL.md +0 -411
  87. package/bin/skills/bitsandbytes/references/memory-optimization.md +0 -521
  88. package/bin/skills/bitsandbytes/references/qlora-training.md +0 -521
  89. package/bin/skills/bitsandbytes/references/quantization-formats.md +0 -447
  90. package/bin/skills/blip-2/SKILL.md +0 -564
  91. package/bin/skills/blip-2/references/advanced-usage.md +0 -680
  92. package/bin/skills/blip-2/references/troubleshooting.md +0 -526
  93. package/bin/skills/brenda-database/SKILL.md +0 -719
  94. package/bin/skills/brenda-database/references/api_reference.md +0 -537
  95. package/bin/skills/brenda-database/scripts/brenda_queries.py +0 -844
  96. package/bin/skills/brenda-database/scripts/brenda_visualization.py +0 -772
  97. package/bin/skills/brenda-database/scripts/enzyme_pathway_builder.py +0 -1053
  98. package/bin/skills/cellxgene-census/SKILL.md +0 -511
  99. package/bin/skills/cellxgene-census/references/census_schema.md +0 -182
  100. package/bin/skills/cellxgene-census/references/common_patterns.md +0 -351
  101. package/bin/skills/chembl-database/SKILL.md +0 -389
  102. package/bin/skills/chembl-database/references/api_reference.md +0 -272
  103. package/bin/skills/chembl-database/scripts/example_queries.py +0 -278
  104. package/bin/skills/chroma/SKILL.md +0 -406
  105. package/bin/skills/chroma/references/integration.md +0 -38
  106. package/bin/skills/cirq/SKILL.md +0 -346
  107. package/bin/skills/cirq/references/building.md +0 -307
  108. package/bin/skills/cirq/references/experiments.md +0 -572
  109. package/bin/skills/cirq/references/hardware.md +0 -515
  110. package/bin/skills/cirq/references/noise.md +0 -515
  111. package/bin/skills/cirq/references/simulation.md +0 -350
  112. package/bin/skills/cirq/references/transformation.md +0 -416
  113. package/bin/skills/citation-management/SKILL.md +0 -1109
  114. package/bin/skills/citation-management/assets/bibtex_template.bib +0 -264
  115. package/bin/skills/citation-management/assets/citation_checklist.md +0 -386
  116. package/bin/skills/citation-management/references/bibtex_formatting.md +0 -908
  117. package/bin/skills/citation-management/references/citation_validation.md +0 -794
  118. package/bin/skills/citation-management/references/google_scholar_search.md +0 -725
  119. package/bin/skills/citation-management/references/metadata_extraction.md +0 -870
  120. package/bin/skills/citation-management/references/pubmed_search.md +0 -839
  121. package/bin/skills/citation-management/scripts/doi_to_bibtex.py +0 -182
  122. package/bin/skills/citation-management/scripts/extract_metadata.py +0 -570
  123. package/bin/skills/citation-management/scripts/format_bibtex.py +0 -349
  124. package/bin/skills/citation-management/scripts/search_google_scholar.py +0 -251
  125. package/bin/skills/citation-management/scripts/search_pubmed.py +0 -348
  126. package/bin/skills/citation-management/scripts/validate_citations.py +0 -494
  127. package/bin/skills/clinical-decision-support/README.md +0 -129
  128. package/bin/skills/clinical-decision-support/SKILL.md +0 -506
  129. package/bin/skills/clinical-decision-support/assets/biomarker_report_template.tex +0 -380
  130. package/bin/skills/clinical-decision-support/assets/clinical_pathway_template.tex +0 -222
  131. package/bin/skills/clinical-decision-support/assets/cohort_analysis_template.tex +0 -359
  132. package/bin/skills/clinical-decision-support/assets/color_schemes.tex +0 -149
  133. package/bin/skills/clinical-decision-support/assets/example_gbm_cohort.md +0 -208
  134. package/bin/skills/clinical-decision-support/assets/recommendation_strength_guide.md +0 -328
  135. package/bin/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +0 -529
  136. package/bin/skills/clinical-decision-support/references/biomarker_classification.md +0 -719
  137. package/bin/skills/clinical-decision-support/references/clinical_decision_algorithms.md +0 -604
  138. package/bin/skills/clinical-decision-support/references/evidence_synthesis.md +0 -840
  139. package/bin/skills/clinical-decision-support/references/outcome_analysis.md +0 -640
  140. package/bin/skills/clinical-decision-support/references/patient_cohort_analysis.md +0 -427
  141. package/bin/skills/clinical-decision-support/references/treatment_recommendations.md +0 -521
  142. package/bin/skills/clinical-decision-support/scripts/biomarker_classifier.py +0 -383
  143. package/bin/skills/clinical-decision-support/scripts/build_decision_tree.py +0 -417
  144. package/bin/skills/clinical-decision-support/scripts/create_cohort_tables.py +0 -509
  145. package/bin/skills/clinical-decision-support/scripts/generate_survival_analysis.py +0 -441
  146. package/bin/skills/clinical-decision-support/scripts/validate_cds_document.py +0 -326
  147. package/bin/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +0 -641
  148. package/bin/skills/clinical-reports/README.md +0 -236
  149. package/bin/skills/clinical-reports/SKILL.md +0 -1127
  150. package/bin/skills/clinical-reports/assets/case_report_template.md +0 -352
  151. package/bin/skills/clinical-reports/assets/clinical_trial_csr_template.md +0 -353
  152. package/bin/skills/clinical-reports/assets/clinical_trial_sae_template.md +0 -359
  153. package/bin/skills/clinical-reports/assets/consult_note_template.md +0 -305
  154. package/bin/skills/clinical-reports/assets/discharge_summary_template.md +0 -453
  155. package/bin/skills/clinical-reports/assets/hipaa_compliance_checklist.md +0 -395
  156. package/bin/skills/clinical-reports/assets/history_physical_template.md +0 -305
  157. package/bin/skills/clinical-reports/assets/lab_report_template.md +0 -309
  158. package/bin/skills/clinical-reports/assets/pathology_report_template.md +0 -249
  159. package/bin/skills/clinical-reports/assets/quality_checklist.md +0 -338
  160. package/bin/skills/clinical-reports/assets/radiology_report_template.md +0 -318
  161. package/bin/skills/clinical-reports/assets/soap_note_template.md +0 -253
  162. package/bin/skills/clinical-reports/references/case_report_guidelines.md +0 -570
  163. package/bin/skills/clinical-reports/references/clinical_trial_reporting.md +0 -693
  164. package/bin/skills/clinical-reports/references/data_presentation.md +0 -530
  165. package/bin/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -629
  166. package/bin/skills/clinical-reports/references/medical_terminology.md +0 -588
  167. package/bin/skills/clinical-reports/references/patient_documentation.md +0 -744
  168. package/bin/skills/clinical-reports/references/peer_review_standards.md +0 -585
  169. package/bin/skills/clinical-reports/references/regulatory_compliance.md +0 -577
  170. package/bin/skills/clinical-reports/scripts/check_deidentification.py +0 -332
  171. package/bin/skills/clinical-reports/scripts/compliance_checker.py +0 -78
  172. package/bin/skills/clinical-reports/scripts/extract_clinical_data.py +0 -97
  173. package/bin/skills/clinical-reports/scripts/format_adverse_events.py +0 -97
  174. package/bin/skills/clinical-reports/scripts/generate_report_template.py +0 -149
  175. package/bin/skills/clinical-reports/scripts/terminology_validator.py +0 -126
  176. package/bin/skills/clinical-reports/scripts/validate_case_report.py +0 -323
  177. package/bin/skills/clinical-reports/scripts/validate_trial_report.py +0 -88
  178. package/bin/skills/clinicaltrials-database/SKILL.md +0 -507
  179. package/bin/skills/clinicaltrials-database/references/api_reference.md +0 -358
  180. package/bin/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +0 -215
  181. package/bin/skills/clinpgx-database/SKILL.md +0 -638
  182. package/bin/skills/clinpgx-database/references/api_reference.md +0 -757
  183. package/bin/skills/clinpgx-database/scripts/query_clinpgx.py +0 -518
  184. package/bin/skills/clinvar-database/SKILL.md +0 -362
  185. package/bin/skills/clinvar-database/references/api_reference.md +0 -227
  186. package/bin/skills/clinvar-database/references/clinical_significance.md +0 -218
  187. package/bin/skills/clinvar-database/references/data_formats.md +0 -358
  188. package/bin/skills/clip/SKILL.md +0 -253
  189. package/bin/skills/clip/references/applications.md +0 -207
  190. package/bin/skills/cobrapy/SKILL.md +0 -463
  191. package/bin/skills/cobrapy/references/api_quick_reference.md +0 -655
  192. package/bin/skills/cobrapy/references/workflows.md +0 -593
  193. package/bin/skills/colab-finetuning/SKILL.md +0 -153
  194. package/bin/skills/colab-finetuning/references/bridge-setup.md +0 -68
  195. package/bin/skills/colab-finetuning/references/gpu-tiers.md +0 -54
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  197. package/bin/skills/constitutional-ai/SKILL.md +0 -290
  198. package/bin/skills/cosmic-database/SKILL.md +0 -336
  199. package/bin/skills/cosmic-database/references/cosmic_data_reference.md +0 -220
  200. package/bin/skills/cosmic-database/scripts/download_cosmic.py +0 -231
  201. package/bin/skills/crewai/SKILL.md +0 -498
  202. package/bin/skills/crewai/references/flows.md +0 -438
  203. package/bin/skills/crewai/references/tools.md +0 -429
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  205. package/bin/skills/dask/SKILL.md +0 -456
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  209. package/bin/skills/dask/references/dataframes.md +0 -368
  210. package/bin/skills/dask/references/futures.md +0 -541
  211. package/bin/skills/dask/references/schedulers.md +0 -504
  212. package/bin/skills/datacommons-client/SKILL.md +0 -255
  213. package/bin/skills/datacommons-client/references/getting_started.md +0 -417
  214. package/bin/skills/datacommons-client/references/node.md +0 -250
  215. package/bin/skills/datacommons-client/references/observation.md +0 -185
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  217. package/bin/skills/datamol/SKILL.md +0 -706
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  224. package/bin/skills/deepchem/SKILL.md +0 -597
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  227. package/bin/skills/deepchem/scripts/graph_neural_network.py +0 -338
  228. package/bin/skills/deepchem/scripts/predict_solubility.py +0 -224
  229. package/bin/skills/deepchem/scripts/transfer_learning.py +0 -375
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@@ -1,394 +0,0 @@
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- # Additional USPTO APIs Reference
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-
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- ## Overview
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-
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- Beyond patent search, PEDS, and trademarks, USPTO provides specialized APIs for citations, office actions, assignments, litigation, and other patent data.
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-
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- ## 1. Enriched Citation API
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-
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- ### Overview
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-
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- Provides insights into patent evaluation processes and cited references for the IP5 (USPTO, EPO, JPO, KIPO, CNIPA) and public use.
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-
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- **Versions:** v3, v2, v1
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-
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- **Base URL:** Access through USPTO Open Data Portal
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-
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- ### Purpose
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-
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- Analyze which references examiners cite during patent examination and how patents cite prior art.
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-
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- ### Key Features
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-
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- - **Forward citations** - Patents that cite a given patent
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- - **Backward citations** - References cited by a patent
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- - **Examiner citations** - References cited by examiner vs. applicant
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- - **Citation context** - How and why references are cited
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-
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- ### Use Cases
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-
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- - Prior art analysis
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- - Patent landscape analysis
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- - Identifying related technologies
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- - Assessing patent strength based on citations
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-
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- ## 2. Office Action APIs
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-
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- ### 2.1 Office Action Text Retrieval API
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-
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- **Version:** v1
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-
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- ### Purpose
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-
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- Retrieves complete full-text office action correspondence documents for patent applications.
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-
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- ### Features
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-
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- - Full text of office actions
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- - Restrictions, rejections, objections
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- - Examiner amendments
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- - Search information
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-
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- ### Example Use
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-
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- ```python
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- # Retrieve office action text by application number
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- def get_office_action_text(app_number, api_key):
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- """
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- Fetch full text of office actions for an application.
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- Note: Integrate with PEDS to identify which office actions exist.
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- """
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- # API implementation
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- pass
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- ```
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-
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- ### 2.2 Office Action Citations API
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-
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- **Versions:** v2, beta v1
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-
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- ### Purpose
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-
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- Provides patent citation data extracted from office actions, showing which references examiners used during examination.
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-
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- ### Key Data
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-
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- - Patent and non-patent literature citations
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- - Citation context (rejection, information, etc.)
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- - Examiner search strategies
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- - Prosecution research dataset
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-
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- ### 2.3 Office Action Rejection API
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-
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- **Versions:** v2, beta v1
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-
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- ### Purpose
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-
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- Details rejection reasons and examination outcomes with bulk rejection data through March 2025.
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-
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- ### Rejection Types
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-
90
- - **35 U.S.C. § 102** - Anticipation (lack of novelty)
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- - **35 U.S.C. § 103** - Obviousness
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- - **35 U.S.C. § 112** - Enablement, written description, indefiniteness
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- - **35 U.S.C. § 101** - Subject matter eligibility
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-
95
- ### Use Cases
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-
97
- - Analyze common rejection reasons
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- - Identify problematic claim language
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- - Prepare responses based on historical data
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- - Portfolio analysis of rejection patterns
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-
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- ### 2.4 Office Action Weekly Zips API
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-
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- **Version:** v1
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-
106
- ### Purpose
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-
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- Delivers bulk downloads of full-text office action documents organized by weekly release schedules.
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-
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- ### Features
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-
112
- - Weekly archive downloads
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- - Complete office action text
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- - Bulk access for large-scale analysis
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-
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- ## 3. Patent Assignment Search API
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-
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- ### Overview
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-
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- **Version:** v1.4
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-
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- Accesses USPTO patent assignment database for ownership records and transfers.
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-
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- **Base URL:** `https://assignment-api.uspto.gov/patent/`
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-
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- ### Purpose
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-
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- Track patent ownership, assignments, security interests, and corporate transactions.
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-
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- ### Search Methods
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-
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- #### By Patent Number
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-
134
- ```
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- GET /v1.4/assignment/patent/{patent_number}
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- ```
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-
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- #### By Application Number
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-
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- ```
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- GET /v1.4/assignment/application/{application_number}
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- ```
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-
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- #### By Assignee Name
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-
146
- ```
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- POST /v1.4/assignment/search
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- {
149
- "criteria": {
150
- "assigneeName": "Company Name"
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- }
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- }
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- ```
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-
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- ### Response Format
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-
157
- Returns XML with assignment records similar to trademark assignments:
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-
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- - Reel/frame numbers
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- - Conveyance type
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- - Dates (execution and recorded)
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- - Assignors and assignees
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- - Affected patents/applications
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-
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- ### Common Uses
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-
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- ```python
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- def track_patent_ownership(patent_number, api_key):
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- """Track ownership history of a patent."""
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- url = f"https://assignment-api.uspto.gov/patent/v1.4/assignment/patent/{patent_number}"
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- headers = {"X-Api-Key": api_key}
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-
173
- response = requests.get(url, headers=headers)
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- if response.status_code == 200:
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- # Parse XML to extract assignment history
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- return response.text
177
- return None
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-
179
- def find_company_patents(company_name, api_key):
180
- """Find patents assigned to a company."""
181
- url = "https://assignment-api.uspto.gov/patent/v1.4/assignment/search"
182
- headers = {"X-Api-Key": api_key}
183
- data = {"criteria": {"assigneeName": company_name}}
184
-
185
- response = requests.post(url, headers=headers, json=data)
186
- return response.text
187
- ```
188
-
189
- ## 4. PTAB API (Patent Trial and Appeal Board)
190
-
191
- ### Overview
192
-
193
- **Version:** v2
194
-
195
- Access to Patent Trial and Appeal Board proceedings data.
196
-
197
- ### Purpose
198
-
199
- Retrieve information about:
200
- - Inter partes review (IPR)
201
- - Post-grant review (PGR)
202
- - Covered business method (CBM) review
203
- - Ex parte appeals
204
-
205
- ### Data Available
206
-
207
- - Petition information
208
- - Trial decisions
209
- - Final written decisions
210
- - Petitioner and patent owner information
211
- - Claims challenged
212
- - Trial outcomes
213
-
214
- ### Note
215
-
216
- Currently migrating to new Open Data Portal. Check current documentation for access details.
217
-
218
- ## 5. Patent Litigation Cases API
219
-
220
- ### Overview
221
-
222
- **Version:** v1
223
-
224
- Contains 74,623+ district court litigation records covering patent litigation data.
225
-
226
- ### Purpose
227
-
228
- Access federal district court patent infringement cases.
229
-
230
- ### Key Data
231
-
232
- - Case numbers and filing dates
233
- - Patents asserted
234
- - Parties (plaintiffs and defendants)
235
- - Venues
236
- - Case outcomes
237
-
238
- ### Use Cases
239
-
240
- - Litigation risk analysis
241
- - Identify frequently litigated patents
242
- - Track litigation trends
243
- - Analyze venue preferences
244
- - Assess patent enforcement patterns
245
-
246
- ## 6. Cancer Moonshot Patent Data Set API
247
-
248
- ### Overview
249
-
250
- **Version:** v1.0.1
251
-
252
- Specialized dataset for cancer-related patent discoveries.
253
-
254
- ### Purpose
255
-
256
- Search and download patents related to cancer research, treatment, and diagnostics.
257
-
258
- ### Features
259
-
260
- - Curated cancer-related patents
261
- - Bulk data download
262
- - Classification by cancer type
263
- - Treatment modality categorization
264
-
265
- ### Use Cases
266
-
267
- - Cancer research prior art
268
- - Technology landscape analysis
269
- - Identify research trends
270
- - Licensing opportunities
271
-
272
- ## 7. OCE Patent Examination Status/Event Codes APIs
273
-
274
- ### Overview
275
-
276
- **Version:** v1
277
-
278
- Provides official descriptions of USPTO status and event codes used in patent examination.
279
-
280
- ### Purpose
281
-
282
- Decode transaction codes and status codes found in PEDS and other examination data.
283
-
284
- ### Data Provided
285
-
286
- - **Status codes** - Application status descriptions
287
- - **Event codes** - Transaction/event descriptions
288
- - **Code definitions** - Official meanings
289
-
290
- ### Integration
291
-
292
- Use with PEDS data to interpret transaction codes:
293
-
294
- ```python
295
- def get_code_description(code, api_key):
296
- """Get human-readable description of USPTO code."""
297
- # Fetch from OCE API
298
- pass
299
-
300
- def enrich_peds_data(peds_transactions, api_key):
301
- """Add descriptions to PEDS transaction codes."""
302
- for trans in peds_transactions:
303
- trans['description'] = get_code_description(trans['code'], api_key)
304
- return peds_transactions
305
- ```
306
-
307
- ## API Integration Patterns
308
-
309
- ### Combined Workflow Example
310
-
311
- ```python
312
- def comprehensive_patent_analysis(patent_number, api_key):
313
- """
314
- Comprehensive analysis combining multiple APIs.
315
- """
316
- results = {}
317
-
318
- # 1. Get patent details from PatentSearch
319
- results['patent_data'] = search_patent(patent_number, api_key)
320
-
321
- # 2. Get examination history from PEDS
322
- results['prosecution'] = get_peds_data(patent_number, api_key)
323
-
324
- # 3. Get assignment history
325
- results['assignments'] = get_assignments(patent_number, api_key)
326
-
327
- # 4. Get citation data
328
- results['citations'] = get_citations(patent_number, api_key)
329
-
330
- # 5. Check litigation history
331
- results['litigation'] = get_litigation(patent_number, api_key)
332
-
333
- # 6. Get PTAB challenges
334
- results['ptab'] = get_ptab_proceedings(patent_number, api_key)
335
-
336
- return results
337
- ```
338
-
339
- ### Portfolio Analysis Example
340
-
341
- ```python
342
- def analyze_company_portfolio(company_name, api_key):
343
- """
344
- Analyze a company's patent portfolio using multiple APIs.
345
- """
346
- # 1. Find all assigned patents
347
- assignments = find_company_patents(company_name, api_key)
348
- patent_numbers = extract_patent_numbers(assignments)
349
-
350
- # 2. Get details for each patent
351
- portfolio = []
352
- for patent_num in patent_numbers:
353
- patent_data = {
354
- 'number': patent_num,
355
- 'details': search_patent(patent_num, api_key),
356
- 'citations': get_citations(patent_num, api_key),
357
- 'litigation': get_litigation(patent_num, api_key)
358
- }
359
- portfolio.append(patent_data)
360
-
361
- # 3. Aggregate statistics
362
- stats = {
363
- 'total_patents': len(portfolio),
364
- 'cited_by_count': sum(len(p['citations']) for p in portfolio),
365
- 'litigated_count': sum(1 for p in portfolio if p['litigation']),
366
- 'technology_areas': aggregate_tech_areas(portfolio)
367
- }
368
-
369
- return {'portfolio': portfolio, 'statistics': stats}
370
- ```
371
-
372
- ## Best Practices
373
-
374
- 1. **API Key Management** - Use environment variables, never hardcode
375
- 2. **Rate Limiting** - Implement exponential backoff for all APIs
376
- 3. **Caching** - Cache API responses to minimize redundant calls
377
- 4. **Error Handling** - Gracefully handle API errors and missing data
378
- 5. **Data Validation** - Validate input formats before API calls
379
- 6. **Combining APIs** - Use appropriate APIs together for comprehensive analysis
380
- 7. **Documentation** - Keep track of API versions and changes
381
-
382
- ## API Key Registration
383
-
384
- All APIs require registration at:
385
- **https://account.uspto.gov/api-manager/**
386
-
387
- Single API key works across most USPTO APIs.
388
-
389
- ## Resources
390
-
391
- - **Developer Portal**: https://developer.uspto.gov/
392
- - **Open Data Portal**: https://data.uspto.gov/
393
- - **API Catalog**: https://developer.uspto.gov/api-catalog
394
- - **Swagger Docs**: Available for individual APIs
@@ -1,266 +0,0 @@
1
- # PatentSearch API Reference
2
-
3
- ## Overview
4
-
5
- The PatentSearch API is USPTO's modern ElasticSearch-based patent search system that replaced the legacy PatentsView API in May 2025. It provides access to patent data through June 30, 2025, with regular updates.
6
-
7
- **Base URL:** `https://search.patentsview.org/api/v1/`
8
-
9
- ## Authentication
10
-
11
- All API requests require authentication using an API key in the request header:
12
-
13
- ```
14
- X-Api-Key: YOUR_API_KEY
15
- ```
16
-
17
- Register for an API key at: https://account.uspto.gov/api-manager/
18
-
19
- ## Rate Limits
20
-
21
- - **45 requests per minute** per API key
22
- - Exceeding rate limits results in HTTP 429 errors
23
-
24
- ## Available Endpoints
25
-
26
- ### Core Patent & Publication Endpoints
27
-
28
- - **`/patent`** - General patent data (granted patents)
29
- - **`/publication`** - Pregrant publication data
30
- - **`/publication/rel_app_text`** - Related application data for publications
31
-
32
- ### Entity Endpoints
33
-
34
- - **`/inventor`** - Inventor information with location and gender code fields
35
- - **`/assignee`** - Assignee details with location identifiers
36
- - **`/location`** - Geographic data including latitude/longitude coordinates
37
- - **`/attorney`** - Legal representative information
38
-
39
- ### Classification Endpoints
40
-
41
- - **`/cpc_subclass`** - Cooperative Patent Classification at subclass level
42
- - **`/cpc_at_issue`** - CPC classification as of patent issue date
43
- - **`/uspc`** - US Patent Classification data
44
- - **`/wipo`** - World Intellectual Property Organization classifications
45
- - **`/ipc`** - International Patent Classification
46
-
47
- ### Text Data Endpoints (Beta)
48
-
49
- - **`/brief_summary_text`** - Patent brief summaries (granted and pre-grant)
50
- - **`/claims`** - Patent claims text
51
- - **`/drawing_description_text`** - Drawing descriptions
52
- - **`/detail_description_text`** - Detailed description text
53
-
54
- *Note: Text endpoints are in beta with data primarily from 2023 onward. Historical backfilling is in progress.*
55
-
56
- ### Supporting Endpoints
57
-
58
- - **`/other_reference`** - Patent reference materials
59
- - **`/related_document`** - Cross-references between patents
60
-
61
- ## Query Parameters
62
-
63
- All endpoints support four main parameters:
64
-
65
- ### 1. Query String (`q`)
66
-
67
- Filters data using JSON query objects. **Required parameter.**
68
-
69
- **Query Operators:**
70
-
71
- - **Equality**: `{"field": "value"}` or `{"field": {"_eq": "value"}}`
72
- - **Not equal**: `{"field": {"_neq": "value"}}`
73
- - **Comparison**: `_gt`, `_gte`, `_lt`, `_lte`
74
- - **String matching**:
75
- - `_begins` - starts with
76
- - `_contains` - substring match
77
- - **Full-text search** (recommended for text fields):
78
- - `_text_all` - all terms must match
79
- - `_text_any` - any term matches
80
- - `_text_phrase` - exact phrase match
81
- - **Logical operators**: `_and`, `_or`, `_not`
82
- - **Array matching**: Use arrays for OR conditions
83
-
84
- **Examples:**
85
-
86
- ```json
87
- // Simple equality
88
- {"patent_number": "11234567"}
89
-
90
- // Date range
91
- {"patent_date": {"_gte": "2020-01-01", "_lte": "2020-12-31"}}
92
-
93
- // Text search (preferred for text fields)
94
- {"patent_abstract": {"_text_all": ["machine", "learning"]}}
95
-
96
- // Inventor name
97
- {"inventor_name": {"_text_phrase": "John Smith"}}
98
-
99
- // Complex query with logical operators
100
- {
101
- "_and": [
102
- {"patent_date": {"_gte": "2020-01-01"}},
103
- {"assignee_organization": {"_text_any": ["Google", "Alphabet"]}}
104
- ]
105
- }
106
-
107
- // Array for OR conditions
108
- {"cpc_subclass_id": ["H04N", "H04L"]}
109
- ```
110
-
111
- ### 2. Field List (`f`)
112
-
113
- Specifies which fields to return in the response. Optional - each endpoint has default fields.
114
-
115
- **Format:** JSON array of field names
116
-
117
- ```json
118
- ["patent_number", "patent_title", "patent_date", "inventor_name"]
119
- ```
120
-
121
- ### 3. Sorting (`s`)
122
-
123
- Orders results by specified fields. Optional.
124
-
125
- **Format:** JSON array with field name and direction
126
-
127
- ```json
128
- [{"patent_date": "desc"}]
129
- ```
130
-
131
- ### 4. Options (`o`)
132
-
133
- Controls pagination and additional settings. Optional.
134
-
135
- **Available options:**
136
-
137
- - `page` - Page number (default: 1)
138
- - `per_page` - Records per page (default: 100, max: 1,000)
139
- - `pad_patent_id` - Pad patent IDs with leading zeros (default: false)
140
- - `exclude_withdrawn` - Exclude withdrawn patents (default: true)
141
-
142
- **Format:** JSON object
143
-
144
- ```json
145
- {
146
- "page": 1,
147
- "per_page": 500,
148
- "exclude_withdrawn": false
149
- }
150
- ```
151
-
152
- ## Response Format
153
-
154
- All responses follow this structure:
155
-
156
- ```json
157
- {
158
- "error": false,
159
- "count": 100,
160
- "total_hits": 5432,
161
- "patents": [...],
162
- // or "inventors": [...], "assignees": [...], etc.
163
- }
164
- ```
165
-
166
- - `error` - Boolean indicating if an error occurred
167
- - `count` - Number of records in current response
168
- - `total_hits` - Total number of matching records
169
- - Endpoint-specific data array (e.g., `patents`, `inventors`)
170
-
171
- ## Complete Request Example
172
-
173
- ### Using curl
174
-
175
- ```bash
176
- curl -X POST "https://search.patentsview.org/api/v1/patent" \
177
- -H "X-Api-Key: YOUR_API_KEY" \
178
- -H "Content-Type: application/json" \
179
- -d '{
180
- "q": {
181
- "_and": [
182
- {"patent_date": {"_gte": "2024-01-01"}},
183
- {"patent_abstract": {"_text_all": ["artificial", "intelligence"]}}
184
- ]
185
- },
186
- "f": ["patent_number", "patent_title", "patent_date", "assignee_organization"],
187
- "s": [{"patent_date": "desc"}],
188
- "o": {"per_page": 100}
189
- }'
190
- ```
191
-
192
- ### Using Python
193
-
194
- ```python
195
- import requests
196
-
197
- url = "https://search.patentsview.org/api/v1/patent"
198
- headers = {
199
- "X-Api-Key": "YOUR_API_KEY",
200
- "Content-Type": "application/json"
201
- }
202
- data = {
203
- "q": {
204
- "_and": [
205
- {"patent_date": {"_gte": "2024-01-01"}},
206
- {"patent_abstract": {"_text_all": ["artificial", "intelligence"]}}
207
- ]
208
- },
209
- "f": ["patent_number", "patent_title", "patent_date", "assignee_organization"],
210
- "s": [{"patent_date": "desc"}],
211
- "o": {"per_page": 100}
212
- }
213
-
214
- response = requests.post(url, headers=headers, json=data)
215
- results = response.json()
216
- ```
217
-
218
- ## Common Field Names
219
-
220
- ### Patent Endpoint Fields
221
-
222
- - `patent_number` - Patent number
223
- - `patent_title` - Title of the patent
224
- - `patent_date` - Grant date
225
- - `patent_abstract` - Abstract text
226
- - `patent_type` - Type of patent
227
- - `inventor_name` - Inventor names (array)
228
- - `assignee_organization` - Assignee company names (array)
229
- - `cpc_subclass_id` - CPC classification codes
230
- - `uspc_class` - US classification codes
231
- - `cited_patent_number` - Citations to other patents
232
- - `citedby_patent_number` - Patents citing this patent
233
-
234
- Refer to the full field dictionary at: https://search.patentsview.org/docs/
235
-
236
- ## Best Practices
237
-
238
- 1. **Use `_text*` operators for text fields** - More performant than `_contains` or `_begins`
239
- 2. **Request only needed fields** - Reduces response size and improves performance
240
- 3. **Implement pagination** - Handle large result sets efficiently
241
- 4. **Respect rate limits** - Implement backoff/retry logic for 429 errors
242
- 5. **Cache results** - Reduce redundant API calls
243
- 6. **Use date ranges** - Narrow searches to improve performance
244
-
245
- ## Error Handling
246
-
247
- Common HTTP status codes:
248
-
249
- - **200** - Success
250
- - **400** - Bad request (invalid query syntax)
251
- - **401** - Unauthorized (missing or invalid API key)
252
- - **429** - Too many requests (rate limit exceeded)
253
- - **500** - Server error
254
-
255
- ## Recent Updates (February 2025)
256
-
257
- - Data updated through December 31, 2024
258
- - New `pad_patent_id` option for formatting patent IDs
259
- - New `exclude_withdrawn` option to show withdrawn patents
260
- - Text endpoints continue beta backfilling
261
-
262
- ## Resources
263
-
264
- - **Official Documentation**: https://search.patentsview.org/docs/
265
- - **API Key Registration**: https://account.uspto.gov/api-manager/
266
- - **Legacy API Notice**: The old PatentsView API was discontinued May 1, 2025