@synsci/cli-darwin-x64 1.1.97 → 1.1.99
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bin/synsc +0 -0
- package/package.json +1 -1
- package/bin/skills/accelerate/SKILL.md +0 -332
- package/bin/skills/accelerate/references/custom-plugins.md +0 -453
- package/bin/skills/accelerate/references/megatron-integration.md +0 -489
- package/bin/skills/accelerate/references/performance.md +0 -525
- package/bin/skills/adaptyv/SKILL.md +0 -114
- package/bin/skills/adaptyv/reference/api_reference.md +0 -308
- package/bin/skills/adaptyv/reference/examples.md +0 -913
- package/bin/skills/adaptyv/reference/experiments.md +0 -360
- package/bin/skills/adaptyv/reference/protein_optimization.md +0 -637
- package/bin/skills/aeon/SKILL.md +0 -374
- package/bin/skills/aeon/references/anomaly_detection.md +0 -154
- package/bin/skills/aeon/references/classification.md +0 -144
- package/bin/skills/aeon/references/clustering.md +0 -123
- package/bin/skills/aeon/references/datasets_benchmarking.md +0 -387
- package/bin/skills/aeon/references/distances.md +0 -256
- package/bin/skills/aeon/references/forecasting.md +0 -140
- package/bin/skills/aeon/references/networks.md +0 -289
- package/bin/skills/aeon/references/regression.md +0 -118
- package/bin/skills/aeon/references/segmentation.md +0 -163
- package/bin/skills/aeon/references/similarity_search.md +0 -187
- package/bin/skills/aeon/references/transformations.md +0 -246
- package/bin/skills/alphafold-database/SKILL.md +0 -513
- package/bin/skills/alphafold-database/references/api_reference.md +0 -423
- package/bin/skills/anndata/SKILL.md +0 -400
- package/bin/skills/anndata/references/best_practices.md +0 -525
- package/bin/skills/anndata/references/concatenation.md +0 -396
- package/bin/skills/anndata/references/data_structure.md +0 -314
- package/bin/skills/anndata/references/io_operations.md +0 -404
- package/bin/skills/anndata/references/manipulation.md +0 -516
- package/bin/skills/arboreto/SKILL.md +0 -243
- package/bin/skills/arboreto/references/algorithms.md +0 -138
- package/bin/skills/arboreto/references/basic_inference.md +0 -151
- package/bin/skills/arboreto/references/distributed_computing.md +0 -242
- package/bin/skills/arboreto/scripts/basic_grn_inference.py +0 -97
- package/bin/skills/astropy/SKILL.md +0 -331
- package/bin/skills/astropy/references/coordinates.md +0 -273
- package/bin/skills/astropy/references/cosmology.md +0 -307
- package/bin/skills/astropy/references/fits.md +0 -396
- package/bin/skills/astropy/references/tables.md +0 -489
- package/bin/skills/astropy/references/time.md +0 -404
- package/bin/skills/astropy/references/units.md +0 -178
- package/bin/skills/astropy/references/wcs_and_other_modules.md +0 -373
- package/bin/skills/audiocraft/SKILL.md +0 -564
- package/bin/skills/audiocraft/references/advanced-usage.md +0 -666
- package/bin/skills/audiocraft/references/troubleshooting.md +0 -504
- package/bin/skills/autogpt/SKILL.md +0 -403
- package/bin/skills/autogpt/references/advanced-usage.md +0 -535
- package/bin/skills/autogpt/references/troubleshooting.md +0 -420
- package/bin/skills/awq/SKILL.md +0 -310
- package/bin/skills/awq/references/advanced-usage.md +0 -324
- package/bin/skills/awq/references/troubleshooting.md +0 -344
- package/bin/skills/axolotl/SKILL.md +0 -158
- package/bin/skills/axolotl/references/api.md +0 -5548
- package/bin/skills/axolotl/references/dataset-formats.md +0 -1029
- package/bin/skills/axolotl/references/index.md +0 -15
- package/bin/skills/axolotl/references/other.md +0 -3563
- package/bin/skills/benchling-integration/SKILL.md +0 -480
- package/bin/skills/benchling-integration/references/api_endpoints.md +0 -883
- package/bin/skills/benchling-integration/references/authentication.md +0 -379
- package/bin/skills/benchling-integration/references/sdk_reference.md +0 -774
- package/bin/skills/bigcode-evaluation-harness/SKILL.md +0 -405
- package/bin/skills/bigcode-evaluation-harness/references/benchmarks.md +0 -393
- package/bin/skills/bigcode-evaluation-harness/references/custom-tasks.md +0 -424
- package/bin/skills/bigcode-evaluation-harness/references/issues.md +0 -394
- package/bin/skills/biopython/SKILL.md +0 -443
- package/bin/skills/biopython/references/advanced.md +0 -577
- package/bin/skills/biopython/references/alignment.md +0 -362
- package/bin/skills/biopython/references/blast.md +0 -455
- package/bin/skills/biopython/references/databases.md +0 -484
- package/bin/skills/biopython/references/phylogenetics.md +0 -566
- package/bin/skills/biopython/references/sequence_io.md +0 -285
- package/bin/skills/biopython/references/structure.md +0 -564
- package/bin/skills/biorxiv-database/SKILL.md +0 -483
- package/bin/skills/biorxiv-database/references/api_reference.md +0 -280
- package/bin/skills/biorxiv-database/scripts/biorxiv_search.py +0 -445
- package/bin/skills/bioservices/SKILL.md +0 -361
- package/bin/skills/bioservices/references/identifier_mapping.md +0 -685
- package/bin/skills/bioservices/references/services_reference.md +0 -636
- package/bin/skills/bioservices/references/workflow_patterns.md +0 -811
- package/bin/skills/bioservices/scripts/batch_id_converter.py +0 -347
- package/bin/skills/bioservices/scripts/compound_cross_reference.py +0 -378
- package/bin/skills/bioservices/scripts/pathway_analysis.py +0 -309
- package/bin/skills/bioservices/scripts/protein_analysis_workflow.py +0 -408
- package/bin/skills/bitsandbytes/SKILL.md +0 -411
- package/bin/skills/bitsandbytes/references/memory-optimization.md +0 -521
- package/bin/skills/bitsandbytes/references/qlora-training.md +0 -521
- package/bin/skills/bitsandbytes/references/quantization-formats.md +0 -447
- package/bin/skills/blip-2/SKILL.md +0 -564
- package/bin/skills/blip-2/references/advanced-usage.md +0 -680
- package/bin/skills/blip-2/references/troubleshooting.md +0 -526
- package/bin/skills/brenda-database/SKILL.md +0 -719
- package/bin/skills/brenda-database/references/api_reference.md +0 -537
- package/bin/skills/brenda-database/scripts/brenda_queries.py +0 -844
- package/bin/skills/brenda-database/scripts/brenda_visualization.py +0 -772
- package/bin/skills/brenda-database/scripts/enzyme_pathway_builder.py +0 -1053
- package/bin/skills/cellxgene-census/SKILL.md +0 -511
- package/bin/skills/cellxgene-census/references/census_schema.md +0 -182
- package/bin/skills/cellxgene-census/references/common_patterns.md +0 -351
- package/bin/skills/chembl-database/SKILL.md +0 -389
- package/bin/skills/chembl-database/references/api_reference.md +0 -272
- package/bin/skills/chembl-database/scripts/example_queries.py +0 -278
- package/bin/skills/chroma/SKILL.md +0 -406
- package/bin/skills/chroma/references/integration.md +0 -38
- package/bin/skills/cirq/SKILL.md +0 -346
- package/bin/skills/cirq/references/building.md +0 -307
- package/bin/skills/cirq/references/experiments.md +0 -572
- package/bin/skills/cirq/references/hardware.md +0 -515
- package/bin/skills/cirq/references/noise.md +0 -515
- package/bin/skills/cirq/references/simulation.md +0 -350
- package/bin/skills/cirq/references/transformation.md +0 -416
- package/bin/skills/citation-management/SKILL.md +0 -1109
- package/bin/skills/citation-management/assets/bibtex_template.bib +0 -264
- package/bin/skills/citation-management/assets/citation_checklist.md +0 -386
- package/bin/skills/citation-management/references/bibtex_formatting.md +0 -908
- package/bin/skills/citation-management/references/citation_validation.md +0 -794
- package/bin/skills/citation-management/references/google_scholar_search.md +0 -725
- package/bin/skills/citation-management/references/metadata_extraction.md +0 -870
- package/bin/skills/citation-management/references/pubmed_search.md +0 -839
- package/bin/skills/citation-management/scripts/doi_to_bibtex.py +0 -182
- package/bin/skills/citation-management/scripts/extract_metadata.py +0 -570
- package/bin/skills/citation-management/scripts/format_bibtex.py +0 -349
- package/bin/skills/citation-management/scripts/search_google_scholar.py +0 -251
- package/bin/skills/citation-management/scripts/search_pubmed.py +0 -348
- package/bin/skills/citation-management/scripts/validate_citations.py +0 -494
- package/bin/skills/clinical-decision-support/README.md +0 -129
- package/bin/skills/clinical-decision-support/SKILL.md +0 -506
- package/bin/skills/clinical-decision-support/assets/biomarker_report_template.tex +0 -380
- package/bin/skills/clinical-decision-support/assets/clinical_pathway_template.tex +0 -222
- package/bin/skills/clinical-decision-support/assets/cohort_analysis_template.tex +0 -359
- package/bin/skills/clinical-decision-support/assets/color_schemes.tex +0 -149
- package/bin/skills/clinical-decision-support/assets/example_gbm_cohort.md +0 -208
- package/bin/skills/clinical-decision-support/assets/recommendation_strength_guide.md +0 -328
- package/bin/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +0 -529
- package/bin/skills/clinical-decision-support/references/biomarker_classification.md +0 -719
- package/bin/skills/clinical-decision-support/references/clinical_decision_algorithms.md +0 -604
- package/bin/skills/clinical-decision-support/references/evidence_synthesis.md +0 -840
- package/bin/skills/clinical-decision-support/references/outcome_analysis.md +0 -640
- package/bin/skills/clinical-decision-support/references/patient_cohort_analysis.md +0 -427
- package/bin/skills/clinical-decision-support/references/treatment_recommendations.md +0 -521
- package/bin/skills/clinical-decision-support/scripts/biomarker_classifier.py +0 -383
- package/bin/skills/clinical-decision-support/scripts/build_decision_tree.py +0 -417
- package/bin/skills/clinical-decision-support/scripts/create_cohort_tables.py +0 -509
- package/bin/skills/clinical-decision-support/scripts/generate_survival_analysis.py +0 -441
- package/bin/skills/clinical-decision-support/scripts/validate_cds_document.py +0 -326
- package/bin/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +0 -641
- package/bin/skills/clinical-reports/README.md +0 -236
- package/bin/skills/clinical-reports/SKILL.md +0 -1127
- package/bin/skills/clinical-reports/assets/case_report_template.md +0 -352
- package/bin/skills/clinical-reports/assets/clinical_trial_csr_template.md +0 -353
- package/bin/skills/clinical-reports/assets/clinical_trial_sae_template.md +0 -359
- package/bin/skills/clinical-reports/assets/consult_note_template.md +0 -305
- package/bin/skills/clinical-reports/assets/discharge_summary_template.md +0 -453
- package/bin/skills/clinical-reports/assets/hipaa_compliance_checklist.md +0 -395
- package/bin/skills/clinical-reports/assets/history_physical_template.md +0 -305
- package/bin/skills/clinical-reports/assets/lab_report_template.md +0 -309
- package/bin/skills/clinical-reports/assets/pathology_report_template.md +0 -249
- package/bin/skills/clinical-reports/assets/quality_checklist.md +0 -338
- package/bin/skills/clinical-reports/assets/radiology_report_template.md +0 -318
- package/bin/skills/clinical-reports/assets/soap_note_template.md +0 -253
- package/bin/skills/clinical-reports/references/case_report_guidelines.md +0 -570
- package/bin/skills/clinical-reports/references/clinical_trial_reporting.md +0 -693
- package/bin/skills/clinical-reports/references/data_presentation.md +0 -530
- package/bin/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -629
- package/bin/skills/clinical-reports/references/medical_terminology.md +0 -588
- package/bin/skills/clinical-reports/references/patient_documentation.md +0 -744
- package/bin/skills/clinical-reports/references/peer_review_standards.md +0 -585
- package/bin/skills/clinical-reports/references/regulatory_compliance.md +0 -577
- package/bin/skills/clinical-reports/scripts/check_deidentification.py +0 -332
- package/bin/skills/clinical-reports/scripts/compliance_checker.py +0 -78
- package/bin/skills/clinical-reports/scripts/extract_clinical_data.py +0 -97
- package/bin/skills/clinical-reports/scripts/format_adverse_events.py +0 -97
- package/bin/skills/clinical-reports/scripts/generate_report_template.py +0 -149
- package/bin/skills/clinical-reports/scripts/terminology_validator.py +0 -126
- package/bin/skills/clinical-reports/scripts/validate_case_report.py +0 -323
- package/bin/skills/clinical-reports/scripts/validate_trial_report.py +0 -88
- package/bin/skills/clinicaltrials-database/SKILL.md +0 -507
- package/bin/skills/clinicaltrials-database/references/api_reference.md +0 -358
- package/bin/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +0 -215
- package/bin/skills/clinpgx-database/SKILL.md +0 -638
- package/bin/skills/clinpgx-database/references/api_reference.md +0 -757
- package/bin/skills/clinpgx-database/scripts/query_clinpgx.py +0 -518
- package/bin/skills/clinvar-database/SKILL.md +0 -362
- package/bin/skills/clinvar-database/references/api_reference.md +0 -227
- package/bin/skills/clinvar-database/references/clinical_significance.md +0 -218
- package/bin/skills/clinvar-database/references/data_formats.md +0 -358
- package/bin/skills/clip/SKILL.md +0 -253
- package/bin/skills/clip/references/applications.md +0 -207
- package/bin/skills/cobrapy/SKILL.md +0 -463
- package/bin/skills/cobrapy/references/api_quick_reference.md +0 -655
- package/bin/skills/cobrapy/references/workflows.md +0 -593
- package/bin/skills/colab-finetuning/SKILL.md +0 -153
- package/bin/skills/colab-finetuning/references/bridge-setup.md +0 -68
- package/bin/skills/colab-finetuning/references/gpu-tiers.md +0 -54
- package/bin/skills/colab-finetuning/references/troubleshooting.md +0 -79
- package/bin/skills/constitutional-ai/SKILL.md +0 -290
- package/bin/skills/cosmic-database/SKILL.md +0 -336
- package/bin/skills/cosmic-database/references/cosmic_data_reference.md +0 -220
- package/bin/skills/cosmic-database/scripts/download_cosmic.py +0 -231
- package/bin/skills/crewai/SKILL.md +0 -498
- package/bin/skills/crewai/references/flows.md +0 -438
- package/bin/skills/crewai/references/tools.md +0 -429
- package/bin/skills/crewai/references/troubleshooting.md +0 -480
- package/bin/skills/dask/SKILL.md +0 -456
- package/bin/skills/dask/references/arrays.md +0 -497
- package/bin/skills/dask/references/bags.md +0 -468
- package/bin/skills/dask/references/best-practices.md +0 -277
- package/bin/skills/dask/references/dataframes.md +0 -368
- package/bin/skills/dask/references/futures.md +0 -541
- package/bin/skills/dask/references/schedulers.md +0 -504
- package/bin/skills/datacommons-client/SKILL.md +0 -255
- package/bin/skills/datacommons-client/references/getting_started.md +0 -417
- package/bin/skills/datacommons-client/references/node.md +0 -250
- package/bin/skills/datacommons-client/references/observation.md +0 -185
- package/bin/skills/datacommons-client/references/resolve.md +0 -246
- package/bin/skills/datamol/SKILL.md +0 -706
- package/bin/skills/datamol/references/conformers_module.md +0 -131
- package/bin/skills/datamol/references/core_api.md +0 -130
- package/bin/skills/datamol/references/descriptors_viz.md +0 -195
- package/bin/skills/datamol/references/fragments_scaffolds.md +0 -174
- package/bin/skills/datamol/references/io_module.md +0 -109
- package/bin/skills/datamol/references/reactions_data.md +0 -218
- package/bin/skills/deepchem/SKILL.md +0 -597
- package/bin/skills/deepchem/references/api_reference.md +0 -303
- package/bin/skills/deepchem/references/workflows.md +0 -491
- package/bin/skills/deepchem/scripts/graph_neural_network.py +0 -338
- package/bin/skills/deepchem/scripts/predict_solubility.py +0 -224
- package/bin/skills/deepchem/scripts/transfer_learning.py +0 -375
- package/bin/skills/deepspeed/SKILL.md +0 -141
- package/bin/skills/deepspeed/references/08.md +0 -17
- package/bin/skills/deepspeed/references/09.md +0 -173
- package/bin/skills/deepspeed/references/2020.md +0 -378
- package/bin/skills/deepspeed/references/2023.md +0 -279
- package/bin/skills/deepspeed/references/assets.md +0 -179
- package/bin/skills/deepspeed/references/index.md +0 -35
- package/bin/skills/deepspeed/references/mii.md +0 -118
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- package/bin/skills/deepspeed/references/tutorials.md +0 -6554
- package/bin/skills/deeptools/SKILL.md +0 -531
- package/bin/skills/deeptools/assets/quick_reference.md +0 -58
- package/bin/skills/deeptools/references/effective_genome_sizes.md +0 -116
- package/bin/skills/deeptools/references/normalization_methods.md +0 -410
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- package/bin/skills/deeptools/references/workflows.md +0 -474
- package/bin/skills/deeptools/scripts/validate_files.py +0 -195
- package/bin/skills/deeptools/scripts/workflow_generator.py +0 -454
- package/bin/skills/denario/SKILL.md +0 -215
- package/bin/skills/denario/references/examples.md +0 -494
- package/bin/skills/denario/references/installation.md +0 -213
- package/bin/skills/denario/references/llm_configuration.md +0 -265
- package/bin/skills/denario/references/research_pipeline.md +0 -471
- package/bin/skills/diffdock/SKILL.md +0 -483
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- package/bin/skills/diffdock/scripts/analyze_results.py +0 -334
- package/bin/skills/diffdock/scripts/prepare_batch_csv.py +0 -254
- package/bin/skills/diffdock/scripts/setup_check.py +0 -278
- package/bin/skills/dnanexus-integration/SKILL.md +0 -383
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# Check if we got a valid response
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|
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echo -e "${RED}No models found for search term: $SEARCH_TERM${NC}"
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|
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137
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# If arXiv search failed, try without arxiv: prefix
|
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138
|
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if [[ "$IS_ARXIV_SEARCH" == true ]]; then
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echo -e "${YELLOW}Trying broader search without arxiv: prefix...${NC}"
|
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SEARCH_QUERY="$SEARCH_TERM"
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IS_ARXIV_SEARCH=false
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|
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143
|
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if [[ -n "$HF_TOKEN" ]]; then
|
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|
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RESPONSE=$(curl -s -H "Authorization: Bearer $HF_TOKEN" "$API_URL?search=$SEARCH_QUERY&limit=50" || true)
|
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else
|
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RESPONSE=$(curl -s "$API_URL?search=$SEARCH_QUERY&limit=50" || true)
|
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fi
|
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|
-
|
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149
|
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if [[ -z "$RESPONSE" ]] || [[ "$RESPONSE" == "[]" ]]; then
|
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echo -e "${RED}Still no results found. Try a different search term.${NC}"
|
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exit 1
|
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fi
|
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else
|
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exit 1
|
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fi
|
|
156
|
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fi
|
|
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|
-
|
|
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|
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# Process the results
|
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|
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echo -e "${GREEN}Found models! Processing results...${NC}"
|
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|
-
|
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161
|
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# Use jq to process the JSON response and find models with paper associations
|
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|
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MODELS_WITH_PAPERS=$(echo "$RESPONSE" | jq -r '
|
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.[] |
|
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|
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select(.id != null) |
|
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{
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id: .id,
|
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arxiv_tags: [.tags[] | select(. | startswith("arxiv:"))] | join("; "),
|
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downloads: (.downloads // 0),
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likes: (.likes // 0),
|
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task: (.pipeline_tag // "unknown"),
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library: (.library_name // "unknown")
|
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|
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}
|
|
173
|
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| @base64' 2>/dev/null || true)
|
|
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|
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|
|
175
|
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# Count total results
|
|
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|
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TOTAL_MODELS=$(echo "$RESPONSE" | jq 'length' 2>/dev/null || echo "0")
|
|
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|
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MODELS_WITH_PAPERS_COUNT=$(echo "$MODELS_WITH_PAPERS" | wc -l)
|
|
178
|
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|
|
179
|
-
echo -e "${BLUE}Results Summary:${NC}"
|
|
180
|
-
echo -e " Total models found: $TOTAL_MODELS"
|
|
181
|
-
echo -e " Models with paper associations: $MODELS_WITH_PAPERS_COUNT"
|
|
182
|
-
echo ""
|
|
183
|
-
|
|
184
|
-
if [[ -z "$MODELS_WITH_PAPERS" ]]; then
|
|
185
|
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# Show all models even if no paper associations found
|
|
186
|
-
echo -e "${YELLOW}No explicit paper associations found. Showing all matching models:${NC}"
|
|
187
|
-
echo "$RESPONSE" | jq -r '
|
|
188
|
-
.[] |
|
|
189
|
-
select(.id != null) |
|
|
190
|
-
"📦 \(.id)
|
|
191
|
-
Task: \(.pipeline_tag // "unknown")
|
|
192
|
-
Downloads: \(.downloads // 0)
|
|
193
|
-
Likes: \(.likes // 0)
|
|
194
|
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Library: \(.library_name // "unknown")
|
|
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|
-
---"
|
|
196
|
-
' 2>/dev/null || echo "Failed to parse response"
|
|
197
|
-
else
|
|
198
|
-
# Show models with paper associations
|
|
199
|
-
echo -e "${GREEN}Models with paper associations:${NC}"
|
|
200
|
-
echo "$MODELS_WITH_PAPERS" | while read -r model_data; do
|
|
201
|
-
if [[ -n "$model_data" ]]; then
|
|
202
|
-
# Decode base64 and show formatted
|
|
203
|
-
echo "$model_data" | base64 -d | jq -r '
|
|
204
|
-
"📄 \(.id)
|
|
205
|
-
arXiv: \(.arxiv_tags)
|
|
206
|
-
Task: \(.task)
|
|
207
|
-
Downloads: \(.downloads)
|
|
208
|
-
Likes: \(.likes)
|
|
209
|
-
Library: \(.library)
|
|
210
|
-
---"
|
|
211
|
-
' 2>/dev/null || echo "Failed to parse model data"
|
|
212
|
-
fi
|
|
213
|
-
done
|
|
214
|
-
fi
|
|
215
|
-
|
|
216
|
-
# Additional search tips
|
|
217
|
-
echo ""
|
|
218
|
-
echo -e "${BLUE}Search Tips:${NC}"
|
|
219
|
-
echo "• Try searching with the full arXiv ID (e.g., 1910.01108)"
|
|
220
|
-
echo "• Try searching with the paper title keywords"
|
|
221
|
-
echo "• Try searching with the model name"
|
|
222
|
-
echo "• Use HF_TOKEN for private models or higher rate limits"
|
|
223
|
-
echo ""
|
|
224
|
-
echo -e "${BLUE}Examples to try:${NC}"
|
|
225
|
-
echo " $0 1910.01108 # DistilBERT paper"
|
|
226
|
-
echo " $0 1810.04805 # BERT paper"
|
|
227
|
-
echo " $0 1706.03762 # Attention is All You Need paper"
|
|
228
|
-
echo " $0 roberta # RoBERTa models"
|
|
229
|
-
echo " $0 transformer # Transformer models"
|
|
230
|
-
echo " HF_TOKEN=your_token $0 1910.01108 # Use authentication"
|
|
@@ -1,96 +0,0 @@
|
|
|
1
|
-
#!/usr/bin/env bash
|
|
2
|
-
|
|
3
|
-
set -euo pipefail
|
|
4
|
-
|
|
5
|
-
show_help() {
|
|
6
|
-
cat << 'USAGE'
|
|
7
|
-
Stream model IDs on stdin, emit one JSON object per line (NDJSON).
|
|
8
|
-
|
|
9
|
-
Usage:
|
|
10
|
-
hf_enrich_models.sh [MODEL_ID ...]
|
|
11
|
-
cat ids.txt | hf_enrich_models.sh
|
|
12
|
-
baseline_hf_api.sh 50 | jq -r '.[].id' | hf_enrich_models.sh
|
|
13
|
-
|
|
14
|
-
Description:
|
|
15
|
-
Reads newline-separated model IDs and fetches basic metadata for each.
|
|
16
|
-
Outputs NDJSON with id, downloads, likes, pipeline_tag, tags.
|
|
17
|
-
Uses HF_TOKEN for auth if the environment variable is set.
|
|
18
|
-
|
|
19
|
-
Examples:
|
|
20
|
-
hf_enrich_models.sh gpt2 distilbert-base-uncased
|
|
21
|
-
baseline_hf_api.sh 50 | jq -r '.[].id' | hf_enrich_models.sh | jq -s 'sort_by(.downloads)'
|
|
22
|
-
HF_TOKEN=your_token hf_enrich_models.sh microsoft/DialoGPT-medium
|
|
23
|
-
USAGE
|
|
24
|
-
}
|
|
25
|
-
|
|
26
|
-
if [[ "${1:-}" == "--help" ]]; then
|
|
27
|
-
show_help
|
|
28
|
-
exit 0
|
|
29
|
-
fi
|
|
30
|
-
|
|
31
|
-
if ! command -v jq >/dev/null 2>&1; then
|
|
32
|
-
echo "Error: jq is required but not installed" >&2
|
|
33
|
-
exit 1
|
|
34
|
-
fi
|
|
35
|
-
|
|
36
|
-
headers=()
|
|
37
|
-
if [[ -n "${HF_TOKEN:-}" ]]; then
|
|
38
|
-
headers=(-H "Authorization: Bearer ${HF_TOKEN}")
|
|
39
|
-
fi
|
|
40
|
-
|
|
41
|
-
emit_error() {
|
|
42
|
-
local model_id="$1"
|
|
43
|
-
local message="$2"
|
|
44
|
-
jq -cn --arg id "$model_id" --arg error "$message" '{id: $id, error: $error}'
|
|
45
|
-
}
|
|
46
|
-
|
|
47
|
-
process_id() {
|
|
48
|
-
local model_id="$1"
|
|
49
|
-
|
|
50
|
-
if [[ -z "$model_id" ]]; then
|
|
51
|
-
return 0
|
|
52
|
-
fi
|
|
53
|
-
|
|
54
|
-
local url="https://huggingface.co/api/models/${model_id}"
|
|
55
|
-
local response
|
|
56
|
-
response=$(curl -s "${headers[@]}" "$url" 2>/dev/null || true)
|
|
57
|
-
|
|
58
|
-
if [[ -z "$response" ]]; then
|
|
59
|
-
emit_error "$model_id" "request_failed"
|
|
60
|
-
return 0
|
|
61
|
-
fi
|
|
62
|
-
|
|
63
|
-
if ! jq -e . >/dev/null 2>&1 <<<"$response"; then
|
|
64
|
-
emit_error "$model_id" "invalid_json"
|
|
65
|
-
return 0
|
|
66
|
-
fi
|
|
67
|
-
|
|
68
|
-
if jq -e '.error' >/dev/null 2>&1 <<<"$response"; then
|
|
69
|
-
emit_error "$model_id" "not_found"
|
|
70
|
-
return 0
|
|
71
|
-
fi
|
|
72
|
-
|
|
73
|
-
jq -c --arg id "$model_id" '{
|
|
74
|
-
id: (.id // $id),
|
|
75
|
-
downloads: (.downloads // 0),
|
|
76
|
-
likes: (.likes // 0),
|
|
77
|
-
pipeline_tag: (.pipeline_tag // "unknown"),
|
|
78
|
-
tags: (.tags // [])
|
|
79
|
-
}' <<<"$response" 2>/dev/null || emit_error "$model_id" "parse_failed"
|
|
80
|
-
}
|
|
81
|
-
|
|
82
|
-
if [[ $# -gt 0 ]]; then
|
|
83
|
-
for model_id in "$@"; do
|
|
84
|
-
process_id "$model_id"
|
|
85
|
-
done
|
|
86
|
-
exit 0
|
|
87
|
-
fi
|
|
88
|
-
|
|
89
|
-
if [[ -t 0 ]]; then
|
|
90
|
-
show_help
|
|
91
|
-
exit 1
|
|
92
|
-
fi
|
|
93
|
-
|
|
94
|
-
while IFS= read -r model_id; do
|
|
95
|
-
process_id "$model_id"
|
|
96
|
-
done
|
|
@@ -1,188 +0,0 @@
|
|
|
1
|
-
#!/usr/bin/env bash
|
|
2
|
-
|
|
3
|
-
set -euo pipefail
|
|
4
|
-
|
|
5
|
-
show_help() {
|
|
6
|
-
cat << 'USAGE'
|
|
7
|
-
Fetch Hugging Face model cards via the hf CLI and summarize frontmatter.
|
|
8
|
-
|
|
9
|
-
Usage:
|
|
10
|
-
hf_model_card_frontmatter.sh [MODEL_ID ...]
|
|
11
|
-
cat ids.txt | hf_model_card_frontmatter.sh
|
|
12
|
-
|
|
13
|
-
Description:
|
|
14
|
-
Downloads README.md for each model via `hf download`, extracts YAML
|
|
15
|
-
frontmatter, and emits one JSON object per line (NDJSON) with key fields.
|
|
16
|
-
Uses HF_TOKEN if set (passed to the hf CLI).
|
|
17
|
-
|
|
18
|
-
Output fields:
|
|
19
|
-
id, license, pipeline_tag, library_name, tags, language,
|
|
20
|
-
new_version, has_extra_gated_prompt
|
|
21
|
-
|
|
22
|
-
Examples:
|
|
23
|
-
hf_model_card_frontmatter.sh openai/gpt-oss-120b
|
|
24
|
-
cat ids.txt | hf_model_card_frontmatter.sh | jq -s '.'
|
|
25
|
-
hf_model_card_frontmatter.sh meta-llama/Meta-Llama-3-8B \
|
|
26
|
-
| jq -s 'map({id, license, has_extra_gated_prompt})'
|
|
27
|
-
USAGE
|
|
28
|
-
}
|
|
29
|
-
|
|
30
|
-
if [[ "${1:-}" == "--help" ]]; then
|
|
31
|
-
show_help
|
|
32
|
-
exit 0
|
|
33
|
-
fi
|
|
34
|
-
|
|
35
|
-
if ! command -v hf >/dev/null 2>&1; then
|
|
36
|
-
echo "Error: hf CLI is required but not installed" >&2
|
|
37
|
-
exit 1
|
|
38
|
-
fi
|
|
39
|
-
|
|
40
|
-
if ! command -v python3 >/dev/null 2>&1; then
|
|
41
|
-
echo "Error: python3 is required but not installed" >&2
|
|
42
|
-
exit 1
|
|
43
|
-
fi
|
|
44
|
-
|
|
45
|
-
token_args=()
|
|
46
|
-
if [[ -n "${HF_TOKEN:-}" ]]; then
|
|
47
|
-
token_args=(--token "$HF_TOKEN")
|
|
48
|
-
fi
|
|
49
|
-
|
|
50
|
-
tmp_dir=$(mktemp -d)
|
|
51
|
-
cleanup() {
|
|
52
|
-
rm -rf "$tmp_dir"
|
|
53
|
-
}
|
|
54
|
-
trap cleanup EXIT
|
|
55
|
-
|
|
56
|
-
emit_error() {
|
|
57
|
-
local model_id="$1"
|
|
58
|
-
local message="$2"
|
|
59
|
-
python3 - << 'PY' "$model_id" "$message"
|
|
60
|
-
import json
|
|
61
|
-
import sys
|
|
62
|
-
|
|
63
|
-
model_id = sys.argv[1]
|
|
64
|
-
message = sys.argv[2]
|
|
65
|
-
print(json.dumps({"id": model_id, "error": message}))
|
|
66
|
-
PY
|
|
67
|
-
}
|
|
68
|
-
|
|
69
|
-
parse_readme() {
|
|
70
|
-
local model_id="$1"
|
|
71
|
-
local readme_path="$2"
|
|
72
|
-
|
|
73
|
-
MODEL_ID="$model_id" README_PATH="$readme_path" python3 - << 'PY'
|
|
74
|
-
import json
|
|
75
|
-
import os
|
|
76
|
-
import sys
|
|
77
|
-
|
|
78
|
-
model_id = os.environ.get("MODEL_ID", "")
|
|
79
|
-
readme_path = os.environ.get("README_PATH", "")
|
|
80
|
-
|
|
81
|
-
try:
|
|
82
|
-
with open(readme_path, "r", encoding="utf-8") as f:
|
|
83
|
-
lines = f.read().splitlines()
|
|
84
|
-
except OSError:
|
|
85
|
-
print(json.dumps({"id": model_id, "error": "readme_missing"}))
|
|
86
|
-
sys.exit(0)
|
|
87
|
-
|
|
88
|
-
frontmatter = []
|
|
89
|
-
in_block = False
|
|
90
|
-
for line in lines:
|
|
91
|
-
if line.strip() == "---":
|
|
92
|
-
if in_block:
|
|
93
|
-
break
|
|
94
|
-
in_block = True
|
|
95
|
-
continue
|
|
96
|
-
if in_block:
|
|
97
|
-
frontmatter.append(line)
|
|
98
|
-
|
|
99
|
-
if not frontmatter:
|
|
100
|
-
print(json.dumps({"id": model_id, "error": "frontmatter_missing"}))
|
|
101
|
-
sys.exit(0)
|
|
102
|
-
|
|
103
|
-
key = None
|
|
104
|
-
out = {}
|
|
105
|
-
|
|
106
|
-
for line in frontmatter:
|
|
107
|
-
stripped = line.strip()
|
|
108
|
-
if not stripped or line.lstrip().startswith("#"):
|
|
109
|
-
continue
|
|
110
|
-
|
|
111
|
-
if ":" in line and not line.lstrip().startswith("- "):
|
|
112
|
-
key_candidate, value = line.split(":", 1)
|
|
113
|
-
key_candidate = key_candidate.strip()
|
|
114
|
-
value = value.strip()
|
|
115
|
-
if key_candidate and all(c.isalnum() or c in "_-" for c in key_candidate):
|
|
116
|
-
key = key_candidate
|
|
117
|
-
if value in ("|", "|-", ">", ">-") or value == "":
|
|
118
|
-
out[key] = None
|
|
119
|
-
continue
|
|
120
|
-
if value.startswith("[") and value.endswith("]"):
|
|
121
|
-
items = [v.strip() for v in value.strip("[]").split(",") if v.strip()]
|
|
122
|
-
out[key] = items
|
|
123
|
-
else:
|
|
124
|
-
out[key] = value
|
|
125
|
-
continue
|
|
126
|
-
|
|
127
|
-
if line.lstrip().startswith("- ") and key:
|
|
128
|
-
item = line.strip()[2:]
|
|
129
|
-
if key not in out or out[key] is None:
|
|
130
|
-
out[key] = []
|
|
131
|
-
if isinstance(out[key], list):
|
|
132
|
-
out[key].append(item)
|
|
133
|
-
|
|
134
|
-
result = {
|
|
135
|
-
"id": model_id,
|
|
136
|
-
"license": out.get("license"),
|
|
137
|
-
"pipeline_tag": out.get("pipeline_tag"),
|
|
138
|
-
"library_name": out.get("library_name"),
|
|
139
|
-
"tags": out.get("tags", []),
|
|
140
|
-
"language": out.get("language", []),
|
|
141
|
-
"new_version": out.get("new_version"),
|
|
142
|
-
"has_extra_gated_prompt": "extra_gated_prompt" in out,
|
|
143
|
-
}
|
|
144
|
-
|
|
145
|
-
print(json.dumps(result))
|
|
146
|
-
PY
|
|
147
|
-
}
|
|
148
|
-
|
|
149
|
-
process_id() {
|
|
150
|
-
local model_id="$1"
|
|
151
|
-
|
|
152
|
-
if [[ -z "$model_id" ]]; then
|
|
153
|
-
return 0
|
|
154
|
-
fi
|
|
155
|
-
|
|
156
|
-
local safe_id
|
|
157
|
-
safe_id=$(printf '%s' "$model_id" | tr '/' '_')
|
|
158
|
-
local local_dir="$tmp_dir/$safe_id"
|
|
159
|
-
|
|
160
|
-
if ! hf download "$model_id" README.md --repo-type model --local-dir "$local_dir" "${token_args[@]}" >/dev/null 2>&1; then
|
|
161
|
-
emit_error "$model_id" "download_failed"
|
|
162
|
-
return 0
|
|
163
|
-
fi
|
|
164
|
-
|
|
165
|
-
local readme_path="$local_dir/README.md"
|
|
166
|
-
if [[ ! -f "$readme_path" ]]; then
|
|
167
|
-
emit_error "$model_id" "readme_missing"
|
|
168
|
-
return 0
|
|
169
|
-
fi
|
|
170
|
-
|
|
171
|
-
parse_readme "$model_id" "$readme_path"
|
|
172
|
-
}
|
|
173
|
-
|
|
174
|
-
if [[ $# -gt 0 ]]; then
|
|
175
|
-
for model_id in "$@"; do
|
|
176
|
-
process_id "$model_id"
|
|
177
|
-
done
|
|
178
|
-
exit 0
|
|
179
|
-
fi
|
|
180
|
-
|
|
181
|
-
if [[ -t 0 ]]; then
|
|
182
|
-
show_help
|
|
183
|
-
exit 1
|
|
184
|
-
fi
|
|
185
|
-
|
|
186
|
-
while IFS= read -r model_id; do
|
|
187
|
-
process_id "$model_id"
|
|
188
|
-
done
|