@synsci/cli-darwin-x64 1.1.97 → 1.1.99

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1549) hide show
  1. package/bin/synsc +0 -0
  2. package/package.json +1 -1
  3. package/bin/skills/accelerate/SKILL.md +0 -332
  4. package/bin/skills/accelerate/references/custom-plugins.md +0 -453
  5. package/bin/skills/accelerate/references/megatron-integration.md +0 -489
  6. package/bin/skills/accelerate/references/performance.md +0 -525
  7. package/bin/skills/adaptyv/SKILL.md +0 -114
  8. package/bin/skills/adaptyv/reference/api_reference.md +0 -308
  9. package/bin/skills/adaptyv/reference/examples.md +0 -913
  10. package/bin/skills/adaptyv/reference/experiments.md +0 -360
  11. package/bin/skills/adaptyv/reference/protein_optimization.md +0 -637
  12. package/bin/skills/aeon/SKILL.md +0 -374
  13. package/bin/skills/aeon/references/anomaly_detection.md +0 -154
  14. package/bin/skills/aeon/references/classification.md +0 -144
  15. package/bin/skills/aeon/references/clustering.md +0 -123
  16. package/bin/skills/aeon/references/datasets_benchmarking.md +0 -387
  17. package/bin/skills/aeon/references/distances.md +0 -256
  18. package/bin/skills/aeon/references/forecasting.md +0 -140
  19. package/bin/skills/aeon/references/networks.md +0 -289
  20. package/bin/skills/aeon/references/regression.md +0 -118
  21. package/bin/skills/aeon/references/segmentation.md +0 -163
  22. package/bin/skills/aeon/references/similarity_search.md +0 -187
  23. package/bin/skills/aeon/references/transformations.md +0 -246
  24. package/bin/skills/alphafold-database/SKILL.md +0 -513
  25. package/bin/skills/alphafold-database/references/api_reference.md +0 -423
  26. package/bin/skills/anndata/SKILL.md +0 -400
  27. package/bin/skills/anndata/references/best_practices.md +0 -525
  28. package/bin/skills/anndata/references/concatenation.md +0 -396
  29. package/bin/skills/anndata/references/data_structure.md +0 -314
  30. package/bin/skills/anndata/references/io_operations.md +0 -404
  31. package/bin/skills/anndata/references/manipulation.md +0 -516
  32. package/bin/skills/arboreto/SKILL.md +0 -243
  33. package/bin/skills/arboreto/references/algorithms.md +0 -138
  34. package/bin/skills/arboreto/references/basic_inference.md +0 -151
  35. package/bin/skills/arboreto/references/distributed_computing.md +0 -242
  36. package/bin/skills/arboreto/scripts/basic_grn_inference.py +0 -97
  37. package/bin/skills/astropy/SKILL.md +0 -331
  38. package/bin/skills/astropy/references/coordinates.md +0 -273
  39. package/bin/skills/astropy/references/cosmology.md +0 -307
  40. package/bin/skills/astropy/references/fits.md +0 -396
  41. package/bin/skills/astropy/references/tables.md +0 -489
  42. package/bin/skills/astropy/references/time.md +0 -404
  43. package/bin/skills/astropy/references/units.md +0 -178
  44. package/bin/skills/astropy/references/wcs_and_other_modules.md +0 -373
  45. package/bin/skills/audiocraft/SKILL.md +0 -564
  46. package/bin/skills/audiocraft/references/advanced-usage.md +0 -666
  47. package/bin/skills/audiocraft/references/troubleshooting.md +0 -504
  48. package/bin/skills/autogpt/SKILL.md +0 -403
  49. package/bin/skills/autogpt/references/advanced-usage.md +0 -535
  50. package/bin/skills/autogpt/references/troubleshooting.md +0 -420
  51. package/bin/skills/awq/SKILL.md +0 -310
  52. package/bin/skills/awq/references/advanced-usage.md +0 -324
  53. package/bin/skills/awq/references/troubleshooting.md +0 -344
  54. package/bin/skills/axolotl/SKILL.md +0 -158
  55. package/bin/skills/axolotl/references/api.md +0 -5548
  56. package/bin/skills/axolotl/references/dataset-formats.md +0 -1029
  57. package/bin/skills/axolotl/references/index.md +0 -15
  58. package/bin/skills/axolotl/references/other.md +0 -3563
  59. package/bin/skills/benchling-integration/SKILL.md +0 -480
  60. package/bin/skills/benchling-integration/references/api_endpoints.md +0 -883
  61. package/bin/skills/benchling-integration/references/authentication.md +0 -379
  62. package/bin/skills/benchling-integration/references/sdk_reference.md +0 -774
  63. package/bin/skills/bigcode-evaluation-harness/SKILL.md +0 -405
  64. package/bin/skills/bigcode-evaluation-harness/references/benchmarks.md +0 -393
  65. package/bin/skills/bigcode-evaluation-harness/references/custom-tasks.md +0 -424
  66. package/bin/skills/bigcode-evaluation-harness/references/issues.md +0 -394
  67. package/bin/skills/biopython/SKILL.md +0 -443
  68. package/bin/skills/biopython/references/advanced.md +0 -577
  69. package/bin/skills/biopython/references/alignment.md +0 -362
  70. package/bin/skills/biopython/references/blast.md +0 -455
  71. package/bin/skills/biopython/references/databases.md +0 -484
  72. package/bin/skills/biopython/references/phylogenetics.md +0 -566
  73. package/bin/skills/biopython/references/sequence_io.md +0 -285
  74. package/bin/skills/biopython/references/structure.md +0 -564
  75. package/bin/skills/biorxiv-database/SKILL.md +0 -483
  76. package/bin/skills/biorxiv-database/references/api_reference.md +0 -280
  77. package/bin/skills/biorxiv-database/scripts/biorxiv_search.py +0 -445
  78. package/bin/skills/bioservices/SKILL.md +0 -361
  79. package/bin/skills/bioservices/references/identifier_mapping.md +0 -685
  80. package/bin/skills/bioservices/references/services_reference.md +0 -636
  81. package/bin/skills/bioservices/references/workflow_patterns.md +0 -811
  82. package/bin/skills/bioservices/scripts/batch_id_converter.py +0 -347
  83. package/bin/skills/bioservices/scripts/compound_cross_reference.py +0 -378
  84. package/bin/skills/bioservices/scripts/pathway_analysis.py +0 -309
  85. package/bin/skills/bioservices/scripts/protein_analysis_workflow.py +0 -408
  86. package/bin/skills/bitsandbytes/SKILL.md +0 -411
  87. package/bin/skills/bitsandbytes/references/memory-optimization.md +0 -521
  88. package/bin/skills/bitsandbytes/references/qlora-training.md +0 -521
  89. package/bin/skills/bitsandbytes/references/quantization-formats.md +0 -447
  90. package/bin/skills/blip-2/SKILL.md +0 -564
  91. package/bin/skills/blip-2/references/advanced-usage.md +0 -680
  92. package/bin/skills/blip-2/references/troubleshooting.md +0 -526
  93. package/bin/skills/brenda-database/SKILL.md +0 -719
  94. package/bin/skills/brenda-database/references/api_reference.md +0 -537
  95. package/bin/skills/brenda-database/scripts/brenda_queries.py +0 -844
  96. package/bin/skills/brenda-database/scripts/brenda_visualization.py +0 -772
  97. package/bin/skills/brenda-database/scripts/enzyme_pathway_builder.py +0 -1053
  98. package/bin/skills/cellxgene-census/SKILL.md +0 -511
  99. package/bin/skills/cellxgene-census/references/census_schema.md +0 -182
  100. package/bin/skills/cellxgene-census/references/common_patterns.md +0 -351
  101. package/bin/skills/chembl-database/SKILL.md +0 -389
  102. package/bin/skills/chembl-database/references/api_reference.md +0 -272
  103. package/bin/skills/chembl-database/scripts/example_queries.py +0 -278
  104. package/bin/skills/chroma/SKILL.md +0 -406
  105. package/bin/skills/chroma/references/integration.md +0 -38
  106. package/bin/skills/cirq/SKILL.md +0 -346
  107. package/bin/skills/cirq/references/building.md +0 -307
  108. package/bin/skills/cirq/references/experiments.md +0 -572
  109. package/bin/skills/cirq/references/hardware.md +0 -515
  110. package/bin/skills/cirq/references/noise.md +0 -515
  111. package/bin/skills/cirq/references/simulation.md +0 -350
  112. package/bin/skills/cirq/references/transformation.md +0 -416
  113. package/bin/skills/citation-management/SKILL.md +0 -1109
  114. package/bin/skills/citation-management/assets/bibtex_template.bib +0 -264
  115. package/bin/skills/citation-management/assets/citation_checklist.md +0 -386
  116. package/bin/skills/citation-management/references/bibtex_formatting.md +0 -908
  117. package/bin/skills/citation-management/references/citation_validation.md +0 -794
  118. package/bin/skills/citation-management/references/google_scholar_search.md +0 -725
  119. package/bin/skills/citation-management/references/metadata_extraction.md +0 -870
  120. package/bin/skills/citation-management/references/pubmed_search.md +0 -839
  121. package/bin/skills/citation-management/scripts/doi_to_bibtex.py +0 -182
  122. package/bin/skills/citation-management/scripts/extract_metadata.py +0 -570
  123. package/bin/skills/citation-management/scripts/format_bibtex.py +0 -349
  124. package/bin/skills/citation-management/scripts/search_google_scholar.py +0 -251
  125. package/bin/skills/citation-management/scripts/search_pubmed.py +0 -348
  126. package/bin/skills/citation-management/scripts/validate_citations.py +0 -494
  127. package/bin/skills/clinical-decision-support/README.md +0 -129
  128. package/bin/skills/clinical-decision-support/SKILL.md +0 -506
  129. package/bin/skills/clinical-decision-support/assets/biomarker_report_template.tex +0 -380
  130. package/bin/skills/clinical-decision-support/assets/clinical_pathway_template.tex +0 -222
  131. package/bin/skills/clinical-decision-support/assets/cohort_analysis_template.tex +0 -359
  132. package/bin/skills/clinical-decision-support/assets/color_schemes.tex +0 -149
  133. package/bin/skills/clinical-decision-support/assets/example_gbm_cohort.md +0 -208
  134. package/bin/skills/clinical-decision-support/assets/recommendation_strength_guide.md +0 -328
  135. package/bin/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +0 -529
  136. package/bin/skills/clinical-decision-support/references/biomarker_classification.md +0 -719
  137. package/bin/skills/clinical-decision-support/references/clinical_decision_algorithms.md +0 -604
  138. package/bin/skills/clinical-decision-support/references/evidence_synthesis.md +0 -840
  139. package/bin/skills/clinical-decision-support/references/outcome_analysis.md +0 -640
  140. package/bin/skills/clinical-decision-support/references/patient_cohort_analysis.md +0 -427
  141. package/bin/skills/clinical-decision-support/references/treatment_recommendations.md +0 -521
  142. package/bin/skills/clinical-decision-support/scripts/biomarker_classifier.py +0 -383
  143. package/bin/skills/clinical-decision-support/scripts/build_decision_tree.py +0 -417
  144. package/bin/skills/clinical-decision-support/scripts/create_cohort_tables.py +0 -509
  145. package/bin/skills/clinical-decision-support/scripts/generate_survival_analysis.py +0 -441
  146. package/bin/skills/clinical-decision-support/scripts/validate_cds_document.py +0 -326
  147. package/bin/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +0 -641
  148. package/bin/skills/clinical-reports/README.md +0 -236
  149. package/bin/skills/clinical-reports/SKILL.md +0 -1127
  150. package/bin/skills/clinical-reports/assets/case_report_template.md +0 -352
  151. package/bin/skills/clinical-reports/assets/clinical_trial_csr_template.md +0 -353
  152. package/bin/skills/clinical-reports/assets/clinical_trial_sae_template.md +0 -359
  153. package/bin/skills/clinical-reports/assets/consult_note_template.md +0 -305
  154. package/bin/skills/clinical-reports/assets/discharge_summary_template.md +0 -453
  155. package/bin/skills/clinical-reports/assets/hipaa_compliance_checklist.md +0 -395
  156. package/bin/skills/clinical-reports/assets/history_physical_template.md +0 -305
  157. package/bin/skills/clinical-reports/assets/lab_report_template.md +0 -309
  158. package/bin/skills/clinical-reports/assets/pathology_report_template.md +0 -249
  159. package/bin/skills/clinical-reports/assets/quality_checklist.md +0 -338
  160. package/bin/skills/clinical-reports/assets/radiology_report_template.md +0 -318
  161. package/bin/skills/clinical-reports/assets/soap_note_template.md +0 -253
  162. package/bin/skills/clinical-reports/references/case_report_guidelines.md +0 -570
  163. package/bin/skills/clinical-reports/references/clinical_trial_reporting.md +0 -693
  164. package/bin/skills/clinical-reports/references/data_presentation.md +0 -530
  165. package/bin/skills/clinical-reports/references/diagnostic_reports_standards.md +0 -629
  166. package/bin/skills/clinical-reports/references/medical_terminology.md +0 -588
  167. package/bin/skills/clinical-reports/references/patient_documentation.md +0 -744
  168. package/bin/skills/clinical-reports/references/peer_review_standards.md +0 -585
  169. package/bin/skills/clinical-reports/references/regulatory_compliance.md +0 -577
  170. package/bin/skills/clinical-reports/scripts/check_deidentification.py +0 -332
  171. package/bin/skills/clinical-reports/scripts/compliance_checker.py +0 -78
  172. package/bin/skills/clinical-reports/scripts/extract_clinical_data.py +0 -97
  173. package/bin/skills/clinical-reports/scripts/format_adverse_events.py +0 -97
  174. package/bin/skills/clinical-reports/scripts/generate_report_template.py +0 -149
  175. package/bin/skills/clinical-reports/scripts/terminology_validator.py +0 -126
  176. package/bin/skills/clinical-reports/scripts/validate_case_report.py +0 -323
  177. package/bin/skills/clinical-reports/scripts/validate_trial_report.py +0 -88
  178. package/bin/skills/clinicaltrials-database/SKILL.md +0 -507
  179. package/bin/skills/clinicaltrials-database/references/api_reference.md +0 -358
  180. package/bin/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +0 -215
  181. package/bin/skills/clinpgx-database/SKILL.md +0 -638
  182. package/bin/skills/clinpgx-database/references/api_reference.md +0 -757
  183. package/bin/skills/clinpgx-database/scripts/query_clinpgx.py +0 -518
  184. package/bin/skills/clinvar-database/SKILL.md +0 -362
  185. package/bin/skills/clinvar-database/references/api_reference.md +0 -227
  186. package/bin/skills/clinvar-database/references/clinical_significance.md +0 -218
  187. package/bin/skills/clinvar-database/references/data_formats.md +0 -358
  188. package/bin/skills/clip/SKILL.md +0 -253
  189. package/bin/skills/clip/references/applications.md +0 -207
  190. package/bin/skills/cobrapy/SKILL.md +0 -463
  191. package/bin/skills/cobrapy/references/api_quick_reference.md +0 -655
  192. package/bin/skills/cobrapy/references/workflows.md +0 -593
  193. package/bin/skills/colab-finetuning/SKILL.md +0 -153
  194. package/bin/skills/colab-finetuning/references/bridge-setup.md +0 -68
  195. package/bin/skills/colab-finetuning/references/gpu-tiers.md +0 -54
  196. package/bin/skills/colab-finetuning/references/troubleshooting.md +0 -79
  197. package/bin/skills/constitutional-ai/SKILL.md +0 -290
  198. package/bin/skills/cosmic-database/SKILL.md +0 -336
  199. package/bin/skills/cosmic-database/references/cosmic_data_reference.md +0 -220
  200. package/bin/skills/cosmic-database/scripts/download_cosmic.py +0 -231
  201. package/bin/skills/crewai/SKILL.md +0 -498
  202. package/bin/skills/crewai/references/flows.md +0 -438
  203. package/bin/skills/crewai/references/tools.md +0 -429
  204. package/bin/skills/crewai/references/troubleshooting.md +0 -480
  205. package/bin/skills/dask/SKILL.md +0 -456
  206. package/bin/skills/dask/references/arrays.md +0 -497
  207. package/bin/skills/dask/references/bags.md +0 -468
  208. package/bin/skills/dask/references/best-practices.md +0 -277
  209. package/bin/skills/dask/references/dataframes.md +0 -368
  210. package/bin/skills/dask/references/futures.md +0 -541
  211. package/bin/skills/dask/references/schedulers.md +0 -504
  212. package/bin/skills/datacommons-client/SKILL.md +0 -255
  213. package/bin/skills/datacommons-client/references/getting_started.md +0 -417
  214. package/bin/skills/datacommons-client/references/node.md +0 -250
  215. package/bin/skills/datacommons-client/references/observation.md +0 -185
  216. package/bin/skills/datacommons-client/references/resolve.md +0 -246
  217. package/bin/skills/datamol/SKILL.md +0 -706
  218. package/bin/skills/datamol/references/conformers_module.md +0 -131
  219. package/bin/skills/datamol/references/core_api.md +0 -130
  220. package/bin/skills/datamol/references/descriptors_viz.md +0 -195
  221. package/bin/skills/datamol/references/fragments_scaffolds.md +0 -174
  222. package/bin/skills/datamol/references/io_module.md +0 -109
  223. package/bin/skills/datamol/references/reactions_data.md +0 -218
  224. package/bin/skills/deepchem/SKILL.md +0 -597
  225. package/bin/skills/deepchem/references/api_reference.md +0 -303
  226. package/bin/skills/deepchem/references/workflows.md +0 -491
  227. package/bin/skills/deepchem/scripts/graph_neural_network.py +0 -338
  228. package/bin/skills/deepchem/scripts/predict_solubility.py +0 -224
  229. package/bin/skills/deepchem/scripts/transfer_learning.py +0 -375
  230. package/bin/skills/deepspeed/SKILL.md +0 -141
  231. package/bin/skills/deepspeed/references/08.md +0 -17
  232. package/bin/skills/deepspeed/references/09.md +0 -173
  233. package/bin/skills/deepspeed/references/2020.md +0 -378
  234. package/bin/skills/deepspeed/references/2023.md +0 -279
  235. package/bin/skills/deepspeed/references/assets.md +0 -179
  236. package/bin/skills/deepspeed/references/index.md +0 -35
  237. package/bin/skills/deepspeed/references/mii.md +0 -118
  238. package/bin/skills/deepspeed/references/other.md +0 -1191
  239. package/bin/skills/deepspeed/references/tutorials.md +0 -6554
  240. package/bin/skills/deeptools/SKILL.md +0 -531
  241. package/bin/skills/deeptools/assets/quick_reference.md +0 -58
  242. package/bin/skills/deeptools/references/effective_genome_sizes.md +0 -116
  243. package/bin/skills/deeptools/references/normalization_methods.md +0 -410
  244. package/bin/skills/deeptools/references/tools_reference.md +0 -533
  245. package/bin/skills/deeptools/references/workflows.md +0 -474
  246. package/bin/skills/deeptools/scripts/validate_files.py +0 -195
  247. package/bin/skills/deeptools/scripts/workflow_generator.py +0 -454
  248. package/bin/skills/denario/SKILL.md +0 -215
  249. package/bin/skills/denario/references/examples.md +0 -494
  250. package/bin/skills/denario/references/installation.md +0 -213
  251. package/bin/skills/denario/references/llm_configuration.md +0 -265
  252. package/bin/skills/denario/references/research_pipeline.md +0 -471
  253. package/bin/skills/diffdock/SKILL.md +0 -483
  254. package/bin/skills/diffdock/assets/batch_template.csv +0 -4
  255. package/bin/skills/diffdock/assets/custom_inference_config.yaml +0 -90
  256. package/bin/skills/diffdock/references/confidence_and_limitations.md +0 -182
  257. package/bin/skills/diffdock/references/parameters_reference.md +0 -163
  258. package/bin/skills/diffdock/references/workflows_examples.md +0 -392
  259. package/bin/skills/diffdock/scripts/analyze_results.py +0 -334
  260. package/bin/skills/diffdock/scripts/prepare_batch_csv.py +0 -254
  261. package/bin/skills/diffdock/scripts/setup_check.py +0 -278
  262. package/bin/skills/dnanexus-integration/SKILL.md +0 -383
  263. package/bin/skills/dnanexus-integration/references/app-development.md +0 -247
  264. package/bin/skills/dnanexus-integration/references/configuration.md +0 -646
  265. package/bin/skills/dnanexus-integration/references/data-operations.md +0 -400
  266. package/bin/skills/dnanexus-integration/references/job-execution.md +0 -412
  267. package/bin/skills/dnanexus-integration/references/python-sdk.md +0 -523
  268. package/bin/skills/document-skills/docx/LICENSE.txt +0 -30
  269. package/bin/skills/document-skills/docx/SKILL.md +0 -233
  270. package/bin/skills/document-skills/docx/docx-js.md +0 -350
  271. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +0 -1499
  272. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +0 -146
  273. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +0 -1085
  274. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +0 -11
  275. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +0 -3081
  276. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +0 -23
  277. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +0 -185
  278. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +0 -287
  279. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +0 -1676
  280. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +0 -28
  281. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +0 -144
  282. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +0 -174
  283. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +0 -25
  284. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +0 -18
  285. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +0 -59
  286. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +0 -56
  287. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +0 -195
  288. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +0 -582
  289. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +0 -25
  290. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +0 -4439
  291. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +0 -570
  292. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +0 -509
  293. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +0 -12
  294. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +0 -108
  295. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +0 -96
  296. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +0 -3646
  297. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +0 -116
  298. package/bin/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +0 -42
  299. package/bin/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +0 -50
  300. package/bin/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +0 -49
  301. package/bin/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +0 -33
  302. package/bin/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +0 -75
  303. package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +0 -560
  304. package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +0 -67
  305. package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +0 -14
  306. package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +0 -20
  307. package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +0 -13
  308. package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +0 -4
  309. package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +0 -8
  310. package/bin/skills/document-skills/docx/ooxml/scripts/pack.py +0 -159
  311. package/bin/skills/document-skills/docx/ooxml/scripts/unpack.py +0 -29
  312. package/bin/skills/document-skills/docx/ooxml/scripts/validate.py +0 -69
  313. package/bin/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +0 -15
  314. package/bin/skills/document-skills/docx/ooxml/scripts/validation/base.py +0 -951
  315. package/bin/skills/document-skills/docx/ooxml/scripts/validation/docx.py +0 -274
  316. package/bin/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +0 -315
  317. package/bin/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +0 -279
  318. package/bin/skills/document-skills/docx/ooxml.md +0 -610
  319. package/bin/skills/document-skills/docx/scripts/__init__.py +0 -1
  320. package/bin/skills/document-skills/docx/scripts/document.py +0 -1276
  321. package/bin/skills/document-skills/docx/scripts/templates/comments.xml +0 -3
  322. package/bin/skills/document-skills/docx/scripts/templates/commentsExtended.xml +0 -3
  323. package/bin/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +0 -3
  324. package/bin/skills/document-skills/docx/scripts/templates/commentsIds.xml +0 -3
  325. package/bin/skills/document-skills/docx/scripts/templates/people.xml +0 -3
  326. package/bin/skills/document-skills/docx/scripts/utilities.py +0 -374
  327. package/bin/skills/document-skills/pdf/LICENSE.txt +0 -30
  328. package/bin/skills/document-skills/pdf/SKILL.md +0 -330
  329. package/bin/skills/document-skills/pdf/forms.md +0 -205
  330. package/bin/skills/document-skills/pdf/reference.md +0 -612
  331. package/bin/skills/document-skills/pdf/scripts/check_bounding_boxes.py +0 -70
  332. package/bin/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +0 -226
  333. package/bin/skills/document-skills/pdf/scripts/check_fillable_fields.py +0 -12
  334. package/bin/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +0 -35
  335. package/bin/skills/document-skills/pdf/scripts/create_validation_image.py +0 -41
  336. package/bin/skills/document-skills/pdf/scripts/extract_form_field_info.py +0 -152
  337. package/bin/skills/document-skills/pdf/scripts/fill_fillable_fields.py +0 -114
  338. package/bin/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +0 -108
  339. package/bin/skills/document-skills/pptx/LICENSE.txt +0 -30
  340. package/bin/skills/document-skills/pptx/SKILL.md +0 -520
  341. package/bin/skills/document-skills/pptx/html2pptx.md +0 -625
  342. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +0 -1499
  343. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +0 -146
  344. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +0 -1085
  345. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +0 -11
  346. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +0 -3081
  347. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +0 -23
  348. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +0 -185
  349. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +0 -287
  350. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +0 -1676
  351. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +0 -28
  352. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +0 -144
  353. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +0 -174
  354. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +0 -25
  355. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +0 -18
  356. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +0 -59
  357. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +0 -56
  358. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +0 -195
  359. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +0 -582
  360. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +0 -25
  361. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +0 -4439
  362. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +0 -570
  363. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +0 -509
  364. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +0 -12
  365. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +0 -108
  366. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +0 -96
  367. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +0 -3646
  368. package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +0 -116
  369. package/bin/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +0 -42
  370. package/bin/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +0 -50
  371. package/bin/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +0 -49
  372. package/bin/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +0 -33
  373. package/bin/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +0 -75
  374. package/bin/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +0 -560
  375. package/bin/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2012.xsd +0 -67
  376. package/bin/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2018.xsd +0 -14
  377. package/bin/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cex-2018.xsd +0 -20
  378. package/bin/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-cid-2016.xsd +0 -13
  379. package/bin/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +0 -4
  380. package/bin/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-symex-2015.xsd +0 -8
  381. package/bin/skills/document-skills/pptx/ooxml/scripts/pack.py +0 -159
  382. package/bin/skills/document-skills/pptx/ooxml/scripts/unpack.py +0 -29
  383. package/bin/skills/document-skills/pptx/ooxml/scripts/validate.py +0 -69
  384. package/bin/skills/document-skills/pptx/ooxml/scripts/validation/__init__.py +0 -15
  385. package/bin/skills/document-skills/pptx/ooxml/scripts/validation/base.py +0 -951
  386. package/bin/skills/document-skills/pptx/ooxml/scripts/validation/docx.py +0 -274
  387. package/bin/skills/document-skills/pptx/ooxml/scripts/validation/pptx.py +0 -315
  388. package/bin/skills/document-skills/pptx/ooxml/scripts/validation/redlining.py +0 -279
  389. package/bin/skills/document-skills/pptx/ooxml.md +0 -427
  390. package/bin/skills/document-skills/pptx/scripts/html2pptx.js +0 -979
  391. package/bin/skills/document-skills/pptx/scripts/inventory.py +0 -1020
  392. package/bin/skills/document-skills/pptx/scripts/rearrange.py +0 -231
  393. package/bin/skills/document-skills/pptx/scripts/replace.py +0 -385
  394. package/bin/skills/document-skills/pptx/scripts/thumbnail.py +0 -450
  395. package/bin/skills/document-skills/xlsx/LICENSE.txt +0 -30
  396. package/bin/skills/document-skills/xlsx/SKILL.md +0 -325
  397. package/bin/skills/document-skills/xlsx/recalc.py +0 -178
  398. package/bin/skills/drugbank-database/SKILL.md +0 -190
  399. package/bin/skills/drugbank-database/references/chemical-analysis.md +0 -590
  400. package/bin/skills/drugbank-database/references/data-access.md +0 -242
  401. package/bin/skills/drugbank-database/references/drug-queries.md +0 -386
  402. package/bin/skills/drugbank-database/references/interactions.md +0 -425
  403. package/bin/skills/drugbank-database/references/targets-pathways.md +0 -518
  404. package/bin/skills/drugbank-database/scripts/drugbank_helper.py +0 -350
  405. package/bin/skills/dspy/SKILL.md +0 -590
  406. package/bin/skills/dspy/references/examples.md +0 -663
  407. package/bin/skills/dspy/references/modules.md +0 -475
  408. package/bin/skills/dspy/references/optimizers.md +0 -566
  409. package/bin/skills/ena-database/SKILL.md +0 -204
  410. package/bin/skills/ena-database/references/api_reference.md +0 -490
  411. package/bin/skills/ensembl-database/SKILL.md +0 -311
  412. package/bin/skills/ensembl-database/references/api_endpoints.md +0 -346
  413. package/bin/skills/ensembl-database/scripts/ensembl_query.py +0 -427
  414. package/bin/skills/esm/SKILL.md +0 -306
  415. package/bin/skills/esm/references/esm-c-api.md +0 -583
  416. package/bin/skills/esm/references/esm3-api.md +0 -452
  417. package/bin/skills/esm/references/forge-api.md +0 -657
  418. package/bin/skills/esm/references/workflows.md +0 -685
  419. package/bin/skills/etetoolkit/SKILL.md +0 -623
  420. package/bin/skills/etetoolkit/references/api_reference.md +0 -583
  421. package/bin/skills/etetoolkit/references/visualization.md +0 -783
  422. package/bin/skills/etetoolkit/references/workflows.md +0 -774
  423. package/bin/skills/etetoolkit/scripts/quick_visualize.py +0 -214
  424. package/bin/skills/etetoolkit/scripts/tree_operations.py +0 -229
  425. package/bin/skills/exploratory-data-analysis/SKILL.md +0 -446
  426. package/bin/skills/exploratory-data-analysis/assets/report_template.md +0 -196
  427. package/bin/skills/exploratory-data-analysis/references/bioinformatics_genomics_formats.md +0 -664
  428. package/bin/skills/exploratory-data-analysis/references/chemistry_molecular_formats.md +0 -664
  429. package/bin/skills/exploratory-data-analysis/references/general_scientific_formats.md +0 -518
  430. package/bin/skills/exploratory-data-analysis/references/microscopy_imaging_formats.md +0 -620
  431. package/bin/skills/exploratory-data-analysis/references/proteomics_metabolomics_formats.md +0 -517
  432. package/bin/skills/exploratory-data-analysis/references/spectroscopy_analytical_formats.md +0 -633
  433. package/bin/skills/exploratory-data-analysis/scripts/eda_analyzer.py +0 -547
  434. package/bin/skills/faiss/SKILL.md +0 -221
  435. package/bin/skills/faiss/references/index_types.md +0 -280
  436. package/bin/skills/fda-database/SKILL.md +0 -518
  437. package/bin/skills/fda-database/references/animal_veterinary.md +0 -377
  438. package/bin/skills/fda-database/references/api_basics.md +0 -687
  439. package/bin/skills/fda-database/references/devices.md +0 -632
  440. package/bin/skills/fda-database/references/drugs.md +0 -468
  441. package/bin/skills/fda-database/references/foods.md +0 -374
  442. package/bin/skills/fda-database/references/other.md +0 -472
  443. package/bin/skills/fda-database/scripts/fda_examples.py +0 -335
  444. package/bin/skills/fda-database/scripts/fda_query.py +0 -440
  445. package/bin/skills/fireworks-ai/SKILL.md +0 -665
  446. package/bin/skills/flash-attention/SKILL.md +0 -367
  447. package/bin/skills/flash-attention/references/benchmarks.md +0 -215
  448. package/bin/skills/flash-attention/references/transformers-integration.md +0 -293
  449. package/bin/skills/flowio/SKILL.md +0 -608
  450. package/bin/skills/flowio/references/api_reference.md +0 -372
  451. package/bin/skills/fluidsim/SKILL.md +0 -349
  452. package/bin/skills/fluidsim/references/advanced_features.md +0 -398
  453. package/bin/skills/fluidsim/references/installation.md +0 -68
  454. package/bin/skills/fluidsim/references/output_analysis.md +0 -283
  455. package/bin/skills/fluidsim/references/parameters.md +0 -198
  456. package/bin/skills/fluidsim/references/simulation_workflow.md +0 -172
  457. package/bin/skills/fluidsim/references/solvers.md +0 -94
  458. package/bin/skills/fred-economic-data/SKILL.md +0 -433
  459. package/bin/skills/fred-economic-data/references/api_basics.md +0 -212
  460. package/bin/skills/fred-economic-data/references/categories.md +0 -442
  461. package/bin/skills/fred-economic-data/references/geofred.md +0 -588
  462. package/bin/skills/fred-economic-data/references/releases.md +0 -642
  463. package/bin/skills/fred-economic-data/references/series.md +0 -584
  464. package/bin/skills/fred-economic-data/references/sources.md +0 -423
  465. package/bin/skills/fred-economic-data/references/tags.md +0 -485
  466. package/bin/skills/fred-economic-data/scripts/fred_examples.py +0 -354
  467. package/bin/skills/fred-economic-data/scripts/fred_query.py +0 -590
  468. package/bin/skills/gene-database/SKILL.md +0 -179
  469. package/bin/skills/gene-database/references/api_reference.md +0 -404
  470. package/bin/skills/gene-database/references/common_workflows.md +0 -428
  471. package/bin/skills/gene-database/scripts/batch_gene_lookup.py +0 -298
  472. package/bin/skills/gene-database/scripts/fetch_gene_data.py +0 -277
  473. package/bin/skills/gene-database/scripts/query_gene.py +0 -251
  474. package/bin/skills/generate-image/SKILL.md +0 -178
  475. package/bin/skills/generate-image/scripts/generate_image.py +0 -254
  476. package/bin/skills/geniml/SKILL.md +0 -318
  477. package/bin/skills/geniml/references/bedspace.md +0 -127
  478. package/bin/skills/geniml/references/consensus_peaks.md +0 -238
  479. package/bin/skills/geniml/references/region2vec.md +0 -90
  480. package/bin/skills/geniml/references/scembed.md +0 -197
  481. package/bin/skills/geniml/references/utilities.md +0 -385
  482. package/bin/skills/geo-database/SKILL.md +0 -815
  483. package/bin/skills/geo-database/references/geo_reference.md +0 -829
  484. package/bin/skills/geopandas/SKILL.md +0 -251
  485. package/bin/skills/geopandas/references/crs-management.md +0 -243
  486. package/bin/skills/geopandas/references/data-io.md +0 -165
  487. package/bin/skills/geopandas/references/data-structures.md +0 -70
  488. package/bin/skills/geopandas/references/geometric-operations.md +0 -221
  489. package/bin/skills/geopandas/references/spatial-analysis.md +0 -184
  490. package/bin/skills/geopandas/references/visualization.md +0 -243
  491. package/bin/skills/get-available-resources/SKILL.md +0 -277
  492. package/bin/skills/get-available-resources/scripts/detect_resources.py +0 -401
  493. package/bin/skills/gget/SKILL.md +0 -871
  494. package/bin/skills/gget/references/database_info.md +0 -300
  495. package/bin/skills/gget/references/module_reference.md +0 -467
  496. package/bin/skills/gget/references/workflows.md +0 -814
  497. package/bin/skills/gget/scripts/batch_sequence_analysis.py +0 -191
  498. package/bin/skills/gget/scripts/enrichment_pipeline.py +0 -235
  499. package/bin/skills/gget/scripts/gene_analysis.py +0 -161
  500. package/bin/skills/gguf/SKILL.md +0 -427
  501. package/bin/skills/gguf/references/advanced-usage.md +0 -504
  502. package/bin/skills/gguf/references/troubleshooting.md +0 -442
  503. package/bin/skills/gptq/SKILL.md +0 -450
  504. package/bin/skills/gptq/references/calibration.md +0 -337
  505. package/bin/skills/gptq/references/integration.md +0 -129
  506. package/bin/skills/gptq/references/troubleshooting.md +0 -95
  507. package/bin/skills/groq/SKILL.md +0 -347
  508. package/bin/skills/grpo-rl-training/README.md +0 -97
  509. package/bin/skills/grpo-rl-training/SKILL.md +0 -572
  510. package/bin/skills/grpo-rl-training/examples/reward_functions_library.py +0 -393
  511. package/bin/skills/grpo-rl-training/templates/basic_grpo_training.py +0 -228
  512. package/bin/skills/gtars/SKILL.md +0 -285
  513. package/bin/skills/gtars/references/cli.md +0 -222
  514. package/bin/skills/gtars/references/coverage.md +0 -172
  515. package/bin/skills/gtars/references/overlap.md +0 -156
  516. package/bin/skills/gtars/references/python-api.md +0 -211
  517. package/bin/skills/gtars/references/refget.md +0 -147
  518. package/bin/skills/gtars/references/tokenizers.md +0 -103
  519. package/bin/skills/guidance/SKILL.md +0 -572
  520. package/bin/skills/guidance/references/backends.md +0 -554
  521. package/bin/skills/guidance/references/constraints.md +0 -674
  522. package/bin/skills/guidance/references/examples.md +0 -767
  523. package/bin/skills/gwas-database/SKILL.md +0 -608
  524. package/bin/skills/gwas-database/references/api_reference.md +0 -793
  525. package/bin/skills/histolab/SKILL.md +0 -678
  526. package/bin/skills/histolab/references/filters_preprocessing.md +0 -514
  527. package/bin/skills/histolab/references/slide_management.md +0 -172
  528. package/bin/skills/histolab/references/tile_extraction.md +0 -421
  529. package/bin/skills/histolab/references/tissue_masks.md +0 -251
  530. package/bin/skills/histolab/references/visualization.md +0 -547
  531. package/bin/skills/hmdb-database/SKILL.md +0 -196
  532. package/bin/skills/hmdb-database/references/hmdb_data_fields.md +0 -267
  533. package/bin/skills/hqq/SKILL.md +0 -445
  534. package/bin/skills/hqq/references/advanced-usage.md +0 -528
  535. package/bin/skills/hqq/references/troubleshooting.md +0 -503
  536. package/bin/skills/hugging-face-cli/SKILL.md +0 -191
  537. package/bin/skills/hugging-face-cli/references/commands.md +0 -954
  538. package/bin/skills/hugging-face-cli/references/examples.md +0 -374
  539. package/bin/skills/hugging-face-datasets/SKILL.md +0 -547
  540. package/bin/skills/hugging-face-datasets/examples/diverse_training_examples.json +0 -239
  541. package/bin/skills/hugging-face-datasets/examples/system_prompt_template.txt +0 -196
  542. package/bin/skills/hugging-face-datasets/examples/training_examples.json +0 -176
  543. package/bin/skills/hugging-face-datasets/scripts/dataset_manager.py +0 -522
  544. package/bin/skills/hugging-face-datasets/scripts/sql_manager.py +0 -844
  545. package/bin/skills/hugging-face-datasets/templates/chat.json +0 -55
  546. package/bin/skills/hugging-face-datasets/templates/classification.json +0 -62
  547. package/bin/skills/hugging-face-datasets/templates/completion.json +0 -51
  548. package/bin/skills/hugging-face-datasets/templates/custom.json +0 -75
  549. package/bin/skills/hugging-face-datasets/templates/qa.json +0 -54
  550. package/bin/skills/hugging-face-datasets/templates/tabular.json +0 -81
  551. package/bin/skills/hugging-face-evaluation/SKILL.md +0 -656
  552. package/bin/skills/hugging-face-evaluation/examples/.env.example +0 -7
  553. package/bin/skills/hugging-face-evaluation/examples/USAGE_EXAMPLES.md +0 -382
  554. package/bin/skills/hugging-face-evaluation/examples/artificial_analysis_to_hub.py +0 -141
  555. package/bin/skills/hugging-face-evaluation/examples/example_readme_tables.md +0 -135
  556. package/bin/skills/hugging-face-evaluation/examples/metric_mapping.json +0 -50
  557. package/bin/skills/hugging-face-evaluation/requirements.txt +0 -20
  558. package/bin/skills/hugging-face-evaluation/scripts/evaluation_manager.py +0 -1374
  559. package/bin/skills/hugging-face-evaluation/scripts/inspect_eval_uv.py +0 -104
  560. package/bin/skills/hugging-face-evaluation/scripts/inspect_vllm_uv.py +0 -317
  561. package/bin/skills/hugging-face-evaluation/scripts/lighteval_vllm_uv.py +0 -303
  562. package/bin/skills/hugging-face-evaluation/scripts/run_eval_job.py +0 -98
  563. package/bin/skills/hugging-face-evaluation/scripts/run_vllm_eval_job.py +0 -331
  564. package/bin/skills/hugging-face-evaluation/scripts/test_extraction.py +0 -206
  565. package/bin/skills/hugging-face-jobs/SKILL.md +0 -1040
  566. package/bin/skills/hugging-face-jobs/index.html +0 -216
  567. package/bin/skills/hugging-face-jobs/references/hardware_guide.md +0 -336
  568. package/bin/skills/hugging-face-jobs/references/hub_saving.md +0 -352
  569. package/bin/skills/hugging-face-jobs/references/token_usage.md +0 -546
  570. package/bin/skills/hugging-face-jobs/references/troubleshooting.md +0 -475
  571. package/bin/skills/hugging-face-jobs/scripts/cot-self-instruct.py +0 -718
  572. package/bin/skills/hugging-face-jobs/scripts/finepdfs-stats.py +0 -546
  573. package/bin/skills/hugging-face-jobs/scripts/generate-responses.py +0 -587
  574. package/bin/skills/hugging-face-model-trainer/SKILL.md +0 -710
  575. package/bin/skills/hugging-face-model-trainer/references/gguf_conversion.md +0 -296
  576. package/bin/skills/hugging-face-model-trainer/references/hardware_guide.md +0 -283
  577. package/bin/skills/hugging-face-model-trainer/references/hub_saving.md +0 -364
  578. package/bin/skills/hugging-face-model-trainer/references/reliability_principles.md +0 -371
  579. package/bin/skills/hugging-face-model-trainer/references/trackio_guide.md +0 -189
  580. package/bin/skills/hugging-face-model-trainer/references/training_methods.md +0 -150
  581. package/bin/skills/hugging-face-model-trainer/references/training_patterns.md +0 -203
  582. package/bin/skills/hugging-face-model-trainer/references/troubleshooting.md +0 -282
  583. package/bin/skills/hugging-face-model-trainer/scripts/convert_to_gguf.py +0 -424
  584. package/bin/skills/hugging-face-model-trainer/scripts/dataset_inspector.py +0 -417
  585. package/bin/skills/hugging-face-model-trainer/scripts/estimate_cost.py +0 -150
  586. package/bin/skills/hugging-face-model-trainer/scripts/train_dpo_example.py +0 -106
  587. package/bin/skills/hugging-face-model-trainer/scripts/train_grpo_example.py +0 -89
  588. package/bin/skills/hugging-face-model-trainer/scripts/train_sft_example.py +0 -122
  589. package/bin/skills/hugging-face-paper-publisher/SKILL.md +0 -627
  590. package/bin/skills/hugging-face-paper-publisher/examples/example_usage.md +0 -327
  591. package/bin/skills/hugging-face-paper-publisher/references/quick_reference.md +0 -216
  592. package/bin/skills/hugging-face-paper-publisher/scripts/paper_manager.py +0 -508
  593. package/bin/skills/hugging-face-paper-publisher/templates/arxiv.md +0 -299
  594. package/bin/skills/hugging-face-paper-publisher/templates/ml-report.md +0 -358
  595. package/bin/skills/hugging-face-paper-publisher/templates/modern.md +0 -319
  596. package/bin/skills/hugging-face-paper-publisher/templates/standard.md +0 -201
  597. package/bin/skills/hugging-face-tool-builder/SKILL.md +0 -115
  598. package/bin/skills/hugging-face-tool-builder/references/baseline_hf_api.py +0 -57
  599. package/bin/skills/hugging-face-tool-builder/references/baseline_hf_api.sh +0 -40
  600. package/bin/skills/hugging-face-tool-builder/references/baseline_hf_api.tsx +0 -57
  601. package/bin/skills/hugging-face-tool-builder/references/find_models_by_paper.sh +0 -230
  602. package/bin/skills/hugging-face-tool-builder/references/hf_enrich_models.sh +0 -96
  603. package/bin/skills/hugging-face-tool-builder/references/hf_model_card_frontmatter.sh +0 -188
  604. package/bin/skills/hugging-face-tool-builder/references/hf_model_papers_auth.sh +0 -171
  605. package/bin/skills/hugging-face-trackio/.claude-plugin/plugin.json +0 -19
  606. package/bin/skills/hugging-face-trackio/SKILL.md +0 -65
  607. package/bin/skills/hugging-face-trackio/references/logging_metrics.md +0 -206
  608. package/bin/skills/hugging-face-trackio/references/retrieving_metrics.md +0 -223
  609. package/bin/skills/huggingface-tokenizers/SKILL.md +0 -516
  610. package/bin/skills/huggingface-tokenizers/references/algorithms.md +0 -653
  611. package/bin/skills/huggingface-tokenizers/references/integration.md +0 -637
  612. package/bin/skills/huggingface-tokenizers/references/pipeline.md +0 -723
  613. package/bin/skills/huggingface-tokenizers/references/training.md +0 -565
  614. package/bin/skills/hypogenic/SKILL.md +0 -655
  615. package/bin/skills/hypogenic/references/config_template.yaml +0 -150
  616. package/bin/skills/hypothesis-generation/SKILL.md +0 -293
  617. package/bin/skills/hypothesis-generation/assets/FORMATTING_GUIDE.md +0 -672
  618. package/bin/skills/hypothesis-generation/assets/hypothesis_generation.sty +0 -307
  619. package/bin/skills/hypothesis-generation/assets/hypothesis_report_template.tex +0 -572
  620. package/bin/skills/hypothesis-generation/references/experimental_design_patterns.md +0 -329
  621. package/bin/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +0 -198
  622. package/bin/skills/hypothesis-generation/references/literature_search_strategies.md +0 -622
  623. package/bin/skills/imaging-data-commons/SKILL.md +0 -1182
  624. package/bin/skills/imaging-data-commons/references/bigquery_guide.md +0 -556
  625. package/bin/skills/imaging-data-commons/references/cli_guide.md +0 -272
  626. package/bin/skills/imaging-data-commons/references/cloud_storage_guide.md +0 -333
  627. package/bin/skills/imaging-data-commons/references/dicomweb_guide.md +0 -399
  628. package/bin/skills/infographics/SKILL.md +0 -563
  629. package/bin/skills/infographics/references/color_palettes.md +0 -496
  630. package/bin/skills/infographics/references/design_principles.md +0 -636
  631. package/bin/skills/infographics/references/infographic_types.md +0 -907
  632. package/bin/skills/infographics/scripts/generate_infographic.py +0 -234
  633. package/bin/skills/infographics/scripts/generate_infographic_ai.py +0 -1290
  634. package/bin/skills/instructor/SKILL.md +0 -740
  635. package/bin/skills/instructor/references/examples.md +0 -107
  636. package/bin/skills/instructor/references/providers.md +0 -70
  637. package/bin/skills/instructor/references/validation.md +0 -606
  638. package/bin/skills/iso-13485-certification/SKILL.md +0 -680
  639. package/bin/skills/iso-13485-certification/assets/templates/procedures/CAPA-procedure-template.md +0 -453
  640. package/bin/skills/iso-13485-certification/assets/templates/procedures/document-control-procedure-template.md +0 -567
  641. package/bin/skills/iso-13485-certification/assets/templates/quality-manual-template.md +0 -521
  642. package/bin/skills/iso-13485-certification/references/gap-analysis-checklist.md +0 -568
  643. package/bin/skills/iso-13485-certification/references/iso-13485-requirements.md +0 -610
  644. package/bin/skills/iso-13485-certification/references/mandatory-documents.md +0 -606
  645. package/bin/skills/iso-13485-certification/references/quality-manual-guide.md +0 -688
  646. package/bin/skills/iso-13485-certification/scripts/gap_analyzer.py +0 -440
  647. package/bin/skills/kegg-database/SKILL.md +0 -377
  648. package/bin/skills/kegg-database/references/kegg_reference.md +0 -326
  649. package/bin/skills/kegg-database/scripts/kegg_api.py +0 -251
  650. package/bin/skills/knowledge-distillation/SKILL.md +0 -458
  651. package/bin/skills/knowledge-distillation/references/minillm.md +0 -334
  652. package/bin/skills/labarchive-integration/SKILL.md +0 -268
  653. package/bin/skills/labarchive-integration/references/api_reference.md +0 -342
  654. package/bin/skills/labarchive-integration/references/authentication_guide.md +0 -357
  655. package/bin/skills/labarchive-integration/references/integrations.md +0 -425
  656. package/bin/skills/labarchive-integration/scripts/entry_operations.py +0 -334
  657. package/bin/skills/labarchive-integration/scripts/notebook_operations.py +0 -269
  658. package/bin/skills/labarchive-integration/scripts/setup_config.py +0 -205
  659. package/bin/skills/lambda-labs/SKILL.md +0 -545
  660. package/bin/skills/lambda-labs/references/advanced-usage.md +0 -611
  661. package/bin/skills/lambda-labs/references/troubleshooting.md +0 -530
  662. package/bin/skills/lamindb/SKILL.md +0 -390
  663. package/bin/skills/lamindb/references/annotation-validation.md +0 -513
  664. package/bin/skills/lamindb/references/core-concepts.md +0 -380
  665. package/bin/skills/lamindb/references/data-management.md +0 -433
  666. package/bin/skills/lamindb/references/integrations.md +0 -642
  667. package/bin/skills/lamindb/references/ontologies.md +0 -497
  668. package/bin/skills/lamindb/references/setup-deployment.md +0 -733
  669. package/bin/skills/langchain/SKILL.md +0 -480
  670. package/bin/skills/langchain/references/agents.md +0 -499
  671. package/bin/skills/langchain/references/integration.md +0 -562
  672. package/bin/skills/langchain/references/rag.md +0 -600
  673. package/bin/skills/langsmith/SKILL.md +0 -422
  674. package/bin/skills/langsmith/references/advanced-usage.md +0 -548
  675. package/bin/skills/langsmith/references/troubleshooting.md +0 -537
  676. package/bin/skills/latchbio-integration/SKILL.md +0 -353
  677. package/bin/skills/latchbio-integration/references/data-management.md +0 -427
  678. package/bin/skills/latchbio-integration/references/resource-configuration.md +0 -429
  679. package/bin/skills/latchbio-integration/references/verified-workflows.md +0 -487
  680. package/bin/skills/latchbio-integration/references/workflow-creation.md +0 -254
  681. package/bin/skills/latex-posters/README.md +0 -417
  682. package/bin/skills/latex-posters/SKILL.md +0 -1602
  683. package/bin/skills/latex-posters/assets/baposter_template.tex +0 -257
  684. package/bin/skills/latex-posters/assets/beamerposter_template.tex +0 -244
  685. package/bin/skills/latex-posters/assets/poster_quality_checklist.md +0 -358
  686. package/bin/skills/latex-posters/assets/tikzposter_template.tex +0 -251
  687. package/bin/skills/latex-posters/references/latex_poster_packages.md +0 -745
  688. package/bin/skills/latex-posters/references/poster_content_guide.md +0 -748
  689. package/bin/skills/latex-posters/references/poster_design_principles.md +0 -806
  690. package/bin/skills/latex-posters/references/poster_layout_design.md +0 -900
  691. package/bin/skills/latex-posters/scripts/review_poster.sh +0 -214
  692. package/bin/skills/literature-review/SKILL.md +0 -641
  693. package/bin/skills/literature-review/assets/review_template.md +0 -412
  694. package/bin/skills/literature-review/references/citation_styles.md +0 -166
  695. package/bin/skills/literature-review/references/database_strategies.md +0 -455
  696. package/bin/skills/literature-review/scripts/generate_pdf.py +0 -184
  697. package/bin/skills/literature-review/scripts/search_databases.py +0 -310
  698. package/bin/skills/literature-review/scripts/verify_citations.py +0 -218
  699. package/bin/skills/litgpt/SKILL.md +0 -469
  700. package/bin/skills/litgpt/references/custom-models.md +0 -568
  701. package/bin/skills/litgpt/references/distributed-training.md +0 -451
  702. package/bin/skills/litgpt/references/supported-models.md +0 -336
  703. package/bin/skills/litgpt/references/training-recipes.md +0 -619
  704. package/bin/skills/llama-cpp/SKILL.md +0 -258
  705. package/bin/skills/llama-cpp/references/optimization.md +0 -89
  706. package/bin/skills/llama-cpp/references/quantization.md +0 -213
  707. package/bin/skills/llama-cpp/references/server.md +0 -125
  708. package/bin/skills/llama-factory/SKILL.md +0 -80
  709. package/bin/skills/llama-factory/references/_images.md +0 -23
  710. package/bin/skills/llama-factory/references/advanced.md +0 -1055
  711. package/bin/skills/llama-factory/references/getting_started.md +0 -349
  712. package/bin/skills/llama-factory/references/index.md +0 -19
  713. package/bin/skills/llama-factory/references/other.md +0 -31
  714. package/bin/skills/llamaguard/SKILL.md +0 -337
  715. package/bin/skills/llamaindex/SKILL.md +0 -569
  716. package/bin/skills/llamaindex/references/agents.md +0 -83
  717. package/bin/skills/llamaindex/references/data_connectors.md +0 -108
  718. package/bin/skills/llamaindex/references/query_engines.md +0 -406
  719. package/bin/skills/llava/SKILL.md +0 -304
  720. package/bin/skills/llava/references/training.md +0 -197
  721. package/bin/skills/llm-as-judge-evaluation/SKILL.md +0 -385
  722. package/bin/skills/llm-as-judge-evaluation/references/pairwise-comparison.md +0 -95
  723. package/bin/skills/llm-as-judge-evaluation/references/scoring-rubrics.md +0 -169
  724. package/bin/skills/lm-evaluation-harness/SKILL.md +0 -490
  725. package/bin/skills/lm-evaluation-harness/references/api-evaluation.md +0 -490
  726. package/bin/skills/lm-evaluation-harness/references/benchmark-guide.md +0 -488
  727. package/bin/skills/lm-evaluation-harness/references/custom-tasks.md +0 -602
  728. package/bin/skills/lm-evaluation-harness/references/distributed-eval.md +0 -519
  729. package/bin/skills/long-context/SKILL.md +0 -536
  730. package/bin/skills/long-context/references/extension_methods.md +0 -468
  731. package/bin/skills/long-context/references/fine_tuning.md +0 -611
  732. package/bin/skills/long-context/references/rope.md +0 -402
  733. package/bin/skills/mamba/SKILL.md +0 -260
  734. package/bin/skills/mamba/references/architecture-details.md +0 -206
  735. package/bin/skills/mamba/references/benchmarks.md +0 -255
  736. package/bin/skills/mamba/references/training-guide.md +0 -388
  737. package/bin/skills/market-research-reports/SKILL.md +0 -904
  738. package/bin/skills/market-research-reports/assets/FORMATTING_GUIDE.md +0 -428
  739. package/bin/skills/market-research-reports/assets/market_report_template.tex +0 -1380
  740. package/bin/skills/market-research-reports/assets/market_research.sty +0 -564
  741. package/bin/skills/market-research-reports/references/data_analysis_patterns.md +0 -548
  742. package/bin/skills/market-research-reports/references/report_structure_guide.md +0 -999
  743. package/bin/skills/market-research-reports/references/visual_generation_guide.md +0 -1077
  744. package/bin/skills/market-research-reports/scripts/generate_market_visuals.py +0 -472
  745. package/bin/skills/markitdown/INSTALLATION_GUIDE.md +0 -318
  746. package/bin/skills/markitdown/LICENSE.txt +0 -22
  747. package/bin/skills/markitdown/OPENROUTER_INTEGRATION.md +0 -359
  748. package/bin/skills/markitdown/QUICK_REFERENCE.md +0 -309
  749. package/bin/skills/markitdown/README.md +0 -184
  750. package/bin/skills/markitdown/SKILL.md +0 -486
  751. package/bin/skills/markitdown/SKILL_SUMMARY.md +0 -307
  752. package/bin/skills/markitdown/assets/example_usage.md +0 -463
  753. package/bin/skills/markitdown/references/api_reference.md +0 -399
  754. package/bin/skills/markitdown/references/file_formats.md +0 -542
  755. package/bin/skills/markitdown/scripts/batch_convert.py +0 -195
  756. package/bin/skills/markitdown/scripts/convert_literature.py +0 -262
  757. package/bin/skills/markitdown/scripts/convert_with_ai.py +0 -224
  758. package/bin/skills/matchms/SKILL.md +0 -203
  759. package/bin/skills/matchms/references/filtering.md +0 -288
  760. package/bin/skills/matchms/references/importing_exporting.md +0 -416
  761. package/bin/skills/matchms/references/similarity.md +0 -380
  762. package/bin/skills/matchms/references/workflows.md +0 -647
  763. package/bin/skills/matlab/SKILL.md +0 -376
  764. package/bin/skills/matlab/references/data-import-export.md +0 -479
  765. package/bin/skills/matlab/references/executing-scripts.md +0 -444
  766. package/bin/skills/matlab/references/graphics-visualization.md +0 -579
  767. package/bin/skills/matlab/references/mathematics.md +0 -553
  768. package/bin/skills/matlab/references/matrices-arrays.md +0 -349
  769. package/bin/skills/matlab/references/octave-compatibility.md +0 -544
  770. package/bin/skills/matlab/references/programming.md +0 -672
  771. package/bin/skills/matlab/references/python-integration.md +0 -433
  772. package/bin/skills/matplotlib/SKILL.md +0 -361
  773. package/bin/skills/matplotlib/references/api_reference.md +0 -412
  774. package/bin/skills/matplotlib/references/common_issues.md +0 -563
  775. package/bin/skills/matplotlib/references/plot_types.md +0 -476
  776. package/bin/skills/matplotlib/references/styling_guide.md +0 -589
  777. package/bin/skills/matplotlib/scripts/plot_template.py +0 -401
  778. package/bin/skills/matplotlib/scripts/style_configurator.py +0 -409
  779. package/bin/skills/medchem/SKILL.md +0 -406
  780. package/bin/skills/medchem/references/api_guide.md +0 -600
  781. package/bin/skills/medchem/references/rules_catalog.md +0 -604
  782. package/bin/skills/medchem/scripts/filter_molecules.py +0 -418
  783. package/bin/skills/megatron-core/SKILL.md +0 -366
  784. package/bin/skills/megatron-core/references/benchmarks.md +0 -249
  785. package/bin/skills/megatron-core/references/parallelism-guide.md +0 -404
  786. package/bin/skills/megatron-core/references/production-examples.md +0 -473
  787. package/bin/skills/megatron-core/references/training-recipes.md +0 -547
  788. package/bin/skills/metabolomics-workbench-database/SKILL.md +0 -259
  789. package/bin/skills/metabolomics-workbench-database/references/api_reference.md +0 -494
  790. package/bin/skills/miles/SKILL.md +0 -315
  791. package/bin/skills/miles/references/api-reference.md +0 -141
  792. package/bin/skills/miles/references/troubleshooting.md +0 -352
  793. package/bin/skills/ml-paper-writing/SKILL.md +0 -937
  794. package/bin/skills/ml-paper-writing/references/checklists.md +0 -361
  795. package/bin/skills/ml-paper-writing/references/citation-workflow.md +0 -562
  796. package/bin/skills/ml-paper-writing/references/reviewer-guidelines.md +0 -367
  797. package/bin/skills/ml-paper-writing/references/sources.md +0 -159
  798. package/bin/skills/ml-paper-writing/references/writing-guide.md +0 -476
  799. package/bin/skills/ml-paper-writing/templates/README.md +0 -251
  800. package/bin/skills/ml-paper-writing/templates/aaai2026/README.md +0 -534
  801. package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-supp.tex +0 -144
  802. package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-template.tex +0 -952
  803. package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.bib +0 -111
  804. package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.bst +0 -1493
  805. package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.sty +0 -315
  806. package/bin/skills/ml-paper-writing/templates/acl/README.md +0 -50
  807. package/bin/skills/ml-paper-writing/templates/acl/acl.sty +0 -312
  808. package/bin/skills/ml-paper-writing/templates/acl/acl_latex.tex +0 -377
  809. package/bin/skills/ml-paper-writing/templates/acl/acl_lualatex.tex +0 -101
  810. package/bin/skills/ml-paper-writing/templates/acl/acl_natbib.bst +0 -1940
  811. package/bin/skills/ml-paper-writing/templates/acl/anthology.bib.txt +0 -26
  812. package/bin/skills/ml-paper-writing/templates/acl/custom.bib +0 -70
  813. package/bin/skills/ml-paper-writing/templates/acl/formatting.md +0 -326
  814. package/bin/skills/ml-paper-writing/templates/colm2025/README.md +0 -3
  815. package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bib +0 -11
  816. package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bst +0 -1440
  817. package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.pdf +0 -0
  818. package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.sty +0 -218
  819. package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.tex +0 -305
  820. package/bin/skills/ml-paper-writing/templates/colm2025/fancyhdr.sty +0 -485
  821. package/bin/skills/ml-paper-writing/templates/colm2025/math_commands.tex +0 -508
  822. package/bin/skills/ml-paper-writing/templates/colm2025/natbib.sty +0 -1246
  823. package/bin/skills/ml-paper-writing/templates/iclr2026/fancyhdr.sty +0 -485
  824. package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bib +0 -24
  825. package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bst +0 -1440
  826. package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.pdf +0 -0
  827. package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.sty +0 -246
  828. package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.tex +0 -414
  829. package/bin/skills/ml-paper-writing/templates/iclr2026/math_commands.tex +0 -508
  830. package/bin/skills/ml-paper-writing/templates/iclr2026/natbib.sty +0 -1246
  831. package/bin/skills/ml-paper-writing/templates/icml2026/algorithm.sty +0 -79
  832. package/bin/skills/ml-paper-writing/templates/icml2026/algorithmic.sty +0 -201
  833. package/bin/skills/ml-paper-writing/templates/icml2026/example_paper.bib +0 -75
  834. package/bin/skills/ml-paper-writing/templates/icml2026/example_paper.pdf +0 -0
  835. package/bin/skills/ml-paper-writing/templates/icml2026/example_paper.tex +0 -662
  836. package/bin/skills/ml-paper-writing/templates/icml2026/fancyhdr.sty +0 -864
  837. package/bin/skills/ml-paper-writing/templates/icml2026/icml2026.bst +0 -1443
  838. package/bin/skills/ml-paper-writing/templates/icml2026/icml2026.sty +0 -767
  839. package/bin/skills/ml-paper-writing/templates/icml2026/icml_numpapers.pdf +0 -0
  840. package/bin/skills/ml-paper-writing/templates/neurips2025/Makefile +0 -36
  841. package/bin/skills/ml-paper-writing/templates/neurips2025/extra_pkgs.tex +0 -53
  842. package/bin/skills/ml-paper-writing/templates/neurips2025/main.tex +0 -38
  843. package/bin/skills/ml-paper-writing/templates/neurips2025/neurips.sty +0 -382
  844. package/bin/skills/mlflow/SKILL.md +0 -704
  845. package/bin/skills/mlflow/references/deployment.md +0 -744
  846. package/bin/skills/mlflow/references/model-registry.md +0 -770
  847. package/bin/skills/mlflow/references/tracking.md +0 -680
  848. package/bin/skills/modal/SKILL.md +0 -418
  849. package/bin/skills/modal/references/advanced-patterns.md +0 -695
  850. package/bin/skills/modal/references/examples-catalog.md +0 -423
  851. package/bin/skills/modal/references/troubleshooting.md +0 -494
  852. package/bin/skills/modal-research-gpu/SKILL.md +0 -238
  853. package/bin/skills/model-economics/SKILL.md +0 -238
  854. package/bin/skills/model-merging/SKILL.md +0 -539
  855. package/bin/skills/model-merging/references/evaluation.md +0 -462
  856. package/bin/skills/model-merging/references/examples.md +0 -428
  857. package/bin/skills/model-merging/references/methods.md +0 -352
  858. package/bin/skills/model-pruning/SKILL.md +0 -495
  859. package/bin/skills/model-pruning/references/wanda.md +0 -347
  860. package/bin/skills/moe-training/SKILL.md +0 -526
  861. package/bin/skills/moe-training/references/architectures.md +0 -432
  862. package/bin/skills/moe-training/references/inference.md +0 -348
  863. package/bin/skills/moe-training/references/training.md +0 -425
  864. package/bin/skills/molfeat/SKILL.md +0 -511
  865. package/bin/skills/molfeat/references/api_reference.md +0 -428
  866. package/bin/skills/molfeat/references/available_featurizers.md +0 -333
  867. package/bin/skills/molfeat/references/examples.md +0 -723
  868. package/bin/skills/nanogpt/SKILL.md +0 -290
  869. package/bin/skills/nanogpt/references/architecture.md +0 -382
  870. package/bin/skills/nanogpt/references/data.md +0 -476
  871. package/bin/skills/nanogpt/references/training.md +0 -564
  872. package/bin/skills/nemo-curator/SKILL.md +0 -383
  873. package/bin/skills/nemo-curator/references/deduplication.md +0 -87
  874. package/bin/skills/nemo-curator/references/filtering.md +0 -102
  875. package/bin/skills/nemo-evaluator/SKILL.md +0 -494
  876. package/bin/skills/nemo-evaluator/references/adapter-system.md +0 -340
  877. package/bin/skills/nemo-evaluator/references/configuration.md +0 -447
  878. package/bin/skills/nemo-evaluator/references/custom-benchmarks.md +0 -315
  879. package/bin/skills/nemo-evaluator/references/execution-backends.md +0 -361
  880. package/bin/skills/nemo-guardrails/SKILL.md +0 -297
  881. package/bin/skills/networkx/SKILL.md +0 -437
  882. package/bin/skills/networkx/references/algorithms.md +0 -383
  883. package/bin/skills/networkx/references/generators.md +0 -378
  884. package/bin/skills/networkx/references/graph-basics.md +0 -283
  885. package/bin/skills/networkx/references/io.md +0 -441
  886. package/bin/skills/networkx/references/visualization.md +0 -529
  887. package/bin/skills/neurokit2/SKILL.md +0 -356
  888. package/bin/skills/neurokit2/references/bio_module.md +0 -417
  889. package/bin/skills/neurokit2/references/complexity.md +0 -715
  890. package/bin/skills/neurokit2/references/ecg_cardiac.md +0 -355
  891. package/bin/skills/neurokit2/references/eda.md +0 -497
  892. package/bin/skills/neurokit2/references/eeg.md +0 -506
  893. package/bin/skills/neurokit2/references/emg.md +0 -408
  894. package/bin/skills/neurokit2/references/eog.md +0 -407
  895. package/bin/skills/neurokit2/references/epochs_events.md +0 -471
  896. package/bin/skills/neurokit2/references/hrv.md +0 -480
  897. package/bin/skills/neurokit2/references/ppg.md +0 -413
  898. package/bin/skills/neurokit2/references/rsp.md +0 -510
  899. package/bin/skills/neurokit2/references/signal_processing.md +0 -648
  900. package/bin/skills/neuropixels-analysis/SKILL.md +0 -350
  901. package/bin/skills/neuropixels-analysis/assets/analysis_template.py +0 -271
  902. package/bin/skills/neuropixels-analysis/references/AI_CURATION.md +0 -345
  903. package/bin/skills/neuropixels-analysis/references/ANALYSIS.md +0 -392
  904. package/bin/skills/neuropixels-analysis/references/AUTOMATED_CURATION.md +0 -358
  905. package/bin/skills/neuropixels-analysis/references/MOTION_CORRECTION.md +0 -323
  906. package/bin/skills/neuropixels-analysis/references/PREPROCESSING.md +0 -273
  907. package/bin/skills/neuropixels-analysis/references/QUALITY_METRICS.md +0 -359
  908. package/bin/skills/neuropixels-analysis/references/SPIKE_SORTING.md +0 -339
  909. package/bin/skills/neuropixels-analysis/references/api_reference.md +0 -415
  910. package/bin/skills/neuropixels-analysis/references/plotting_guide.md +0 -454
  911. package/bin/skills/neuropixels-analysis/references/standard_workflow.md +0 -385
  912. package/bin/skills/neuropixels-analysis/scripts/compute_metrics.py +0 -178
  913. package/bin/skills/neuropixels-analysis/scripts/explore_recording.py +0 -168
  914. package/bin/skills/neuropixels-analysis/scripts/export_to_phy.py +0 -79
  915. package/bin/skills/neuropixels-analysis/scripts/neuropixels_pipeline.py +0 -432
  916. package/bin/skills/neuropixels-analysis/scripts/preprocess_recording.py +0 -122
  917. package/bin/skills/neuropixels-analysis/scripts/run_sorting.py +0 -98
  918. package/bin/skills/nnsight/SKILL.md +0 -436
  919. package/bin/skills/nnsight/references/README.md +0 -78
  920. package/bin/skills/nnsight/references/api.md +0 -344
  921. package/bin/skills/nnsight/references/tutorials.md +0 -300
  922. package/bin/skills/offer-k-dense-web/SKILL.md +0 -21
  923. package/bin/skills/omero-integration/SKILL.md +0 -251
  924. package/bin/skills/omero-integration/references/advanced.md +0 -631
  925. package/bin/skills/omero-integration/references/connection.md +0 -369
  926. package/bin/skills/omero-integration/references/data_access.md +0 -544
  927. package/bin/skills/omero-integration/references/image_processing.md +0 -665
  928. package/bin/skills/omero-integration/references/metadata.md +0 -688
  929. package/bin/skills/omero-integration/references/rois.md +0 -648
  930. package/bin/skills/omero-integration/references/scripts.md +0 -637
  931. package/bin/skills/omero-integration/references/tables.md +0 -532
  932. package/bin/skills/openalex-database/SKILL.md +0 -494
  933. package/bin/skills/openalex-database/references/api_guide.md +0 -371
  934. package/bin/skills/openalex-database/references/common_queries.md +0 -381
  935. package/bin/skills/openalex-database/scripts/openalex_client.py +0 -337
  936. package/bin/skills/openalex-database/scripts/query_helpers.py +0 -306
  937. package/bin/skills/openrlhf/SKILL.md +0 -249
  938. package/bin/skills/openrlhf/references/algorithm-comparison.md +0 -404
  939. package/bin/skills/openrlhf/references/custom-rewards.md +0 -530
  940. package/bin/skills/openrlhf/references/hybrid-engine.md +0 -287
  941. package/bin/skills/openrlhf/references/multi-node-training.md +0 -454
  942. package/bin/skills/opentargets-database/SKILL.md +0 -373
  943. package/bin/skills/opentargets-database/references/api_reference.md +0 -249
  944. package/bin/skills/opentargets-database/references/evidence_types.md +0 -306
  945. package/bin/skills/opentargets-database/references/target_annotations.md +0 -401
  946. package/bin/skills/opentargets-database/scripts/query_opentargets.py +0 -403
  947. package/bin/skills/opentrons-integration/SKILL.md +0 -573
  948. package/bin/skills/opentrons-integration/references/api_reference.md +0 -366
  949. package/bin/skills/opentrons-integration/scripts/basic_protocol_template.py +0 -67
  950. package/bin/skills/opentrons-integration/scripts/pcr_setup_template.py +0 -154
  951. package/bin/skills/opentrons-integration/scripts/serial_dilution_template.py +0 -96
  952. package/bin/skills/outlines/SKILL.md +0 -652
  953. package/bin/skills/outlines/references/backends.md +0 -615
  954. package/bin/skills/outlines/references/examples.md +0 -773
  955. package/bin/skills/outlines/references/json_generation.md +0 -652
  956. package/bin/skills/paper-2-web/SKILL.md +0 -491
  957. package/bin/skills/paper-2-web/references/installation.md +0 -141
  958. package/bin/skills/paper-2-web/references/paper2poster.md +0 -346
  959. package/bin/skills/paper-2-web/references/paper2video.md +0 -305
  960. package/bin/skills/paper-2-web/references/paper2web.md +0 -187
  961. package/bin/skills/paper-2-web/references/usage_examples.md +0 -436
  962. package/bin/skills/pathml/SKILL.md +0 -166
  963. package/bin/skills/pathml/references/data_management.md +0 -742
  964. package/bin/skills/pathml/references/graphs.md +0 -653
  965. package/bin/skills/pathml/references/image_loading.md +0 -448
  966. package/bin/skills/pathml/references/machine_learning.md +0 -725
  967. package/bin/skills/pathml/references/multiparametric.md +0 -686
  968. package/bin/skills/pathml/references/preprocessing.md +0 -722
  969. package/bin/skills/pdb-database/SKILL.md +0 -309
  970. package/bin/skills/pdb-database/references/api_reference.md +0 -617
  971. package/bin/skills/peer-review/SKILL.md +0 -702
  972. package/bin/skills/peer-review/references/calibration_guidelines.md +0 -196
  973. package/bin/skills/peer-review/references/common_issues.md +0 -552
  974. package/bin/skills/peer-review/references/paper_mechanics.md +0 -269
  975. package/bin/skills/peer-review/references/reporting_standards.md +0 -290
  976. package/bin/skills/peer-review/references/scoring_rubric.md +0 -239
  977. package/bin/skills/peft/SKILL.md +0 -431
  978. package/bin/skills/peft/references/advanced-usage.md +0 -514
  979. package/bin/skills/peft/references/troubleshooting.md +0 -480
  980. package/bin/skills/pennylane/SKILL.md +0 -226
  981. package/bin/skills/pennylane/references/advanced_features.md +0 -667
  982. package/bin/skills/pennylane/references/devices_backends.md +0 -596
  983. package/bin/skills/pennylane/references/getting_started.md +0 -227
  984. package/bin/skills/pennylane/references/optimization.md +0 -671
  985. package/bin/skills/pennylane/references/quantum_chemistry.md +0 -567
  986. package/bin/skills/pennylane/references/quantum_circuits.md +0 -437
  987. package/bin/skills/pennylane/references/quantum_ml.md +0 -571
  988. package/bin/skills/perplexity-search/SKILL.md +0 -448
  989. package/bin/skills/perplexity-search/assets/.env.example +0 -16
  990. package/bin/skills/perplexity-search/references/model_comparison.md +0 -386
  991. package/bin/skills/perplexity-search/references/openrouter_setup.md +0 -454
  992. package/bin/skills/perplexity-search/references/search_strategies.md +0 -258
  993. package/bin/skills/perplexity-search/scripts/perplexity_search.py +0 -277
  994. package/bin/skills/perplexity-search/scripts/setup_env.py +0 -171
  995. package/bin/skills/phoenix/SKILL.md +0 -475
  996. package/bin/skills/phoenix/references/advanced-usage.md +0 -619
  997. package/bin/skills/phoenix/references/troubleshooting.md +0 -538
  998. package/bin/skills/pinecone/SKILL.md +0 -358
  999. package/bin/skills/pinecone/references/deployment.md +0 -181
  1000. package/bin/skills/plotly/SKILL.md +0 -267
  1001. package/bin/skills/plotly/references/chart-types.md +0 -488
  1002. package/bin/skills/plotly/references/export-interactivity.md +0 -453
  1003. package/bin/skills/plotly/references/graph-objects.md +0 -302
  1004. package/bin/skills/plotly/references/layouts-styling.md +0 -457
  1005. package/bin/skills/plotly/references/plotly-express.md +0 -213
  1006. package/bin/skills/polars/SKILL.md +0 -387
  1007. package/bin/skills/polars/references/best_practices.md +0 -649
  1008. package/bin/skills/polars/references/core_concepts.md +0 -378
  1009. package/bin/skills/polars/references/io_guide.md +0 -557
  1010. package/bin/skills/polars/references/operations.md +0 -602
  1011. package/bin/skills/polars/references/pandas_migration.md +0 -417
  1012. package/bin/skills/polars/references/transformations.md +0 -549
  1013. package/bin/skills/pptx-posters/SKILL.md +0 -410
  1014. package/bin/skills/pptx-posters/assets/poster_html_template.html +0 -257
  1015. package/bin/skills/pptx-posters/assets/poster_quality_checklist.md +0 -358
  1016. package/bin/skills/pptx-posters/references/poster_content_guide.md +0 -748
  1017. package/bin/skills/pptx-posters/references/poster_design_principles.md +0 -806
  1018. package/bin/skills/pptx-posters/references/poster_layout_design.md +0 -900
  1019. package/bin/skills/prime-intellect-lab/README.md +0 -69
  1020. package/bin/skills/prime-intellect-lab/SKILL.md +0 -598
  1021. package/bin/skills/prime-intellect-lab/templates/basic_rl_training.toml +0 -82
  1022. package/bin/skills/protocolsio-integration/SKILL.md +0 -421
  1023. package/bin/skills/protocolsio-integration/references/additional_features.md +0 -387
  1024. package/bin/skills/protocolsio-integration/references/authentication.md +0 -100
  1025. package/bin/skills/protocolsio-integration/references/discussions.md +0 -225
  1026. package/bin/skills/protocolsio-integration/references/file_manager.md +0 -412
  1027. package/bin/skills/protocolsio-integration/references/protocols_api.md +0 -294
  1028. package/bin/skills/protocolsio-integration/references/workspaces.md +0 -293
  1029. package/bin/skills/pubchem-database/SKILL.md +0 -574
  1030. package/bin/skills/pubchem-database/references/api_reference.md +0 -440
  1031. package/bin/skills/pubchem-database/scripts/bioactivity_query.py +0 -367
  1032. package/bin/skills/pubchem-database/scripts/compound_search.py +0 -297
  1033. package/bin/skills/pubmed-database/SKILL.md +0 -460
  1034. package/bin/skills/pubmed-database/references/api_reference.md +0 -298
  1035. package/bin/skills/pubmed-database/references/common_queries.md +0 -453
  1036. package/bin/skills/pubmed-database/references/search_syntax.md +0 -436
  1037. package/bin/skills/pufferlib/SKILL.md +0 -436
  1038. package/bin/skills/pufferlib/references/environments.md +0 -508
  1039. package/bin/skills/pufferlib/references/integration.md +0 -621
  1040. package/bin/skills/pufferlib/references/policies.md +0 -653
  1041. package/bin/skills/pufferlib/references/training.md +0 -360
  1042. package/bin/skills/pufferlib/references/vectorization.md +0 -557
  1043. package/bin/skills/pufferlib/scripts/env_template.py +0 -340
  1044. package/bin/skills/pufferlib/scripts/train_template.py +0 -239
  1045. package/bin/skills/pydeseq2/SKILL.md +0 -559
  1046. package/bin/skills/pydeseq2/references/api_reference.md +0 -228
  1047. package/bin/skills/pydeseq2/references/workflow_guide.md +0 -582
  1048. package/bin/skills/pydeseq2/scripts/run_deseq2_analysis.py +0 -353
  1049. package/bin/skills/pydicom/SKILL.md +0 -434
  1050. package/bin/skills/pydicom/references/common_tags.md +0 -228
  1051. package/bin/skills/pydicom/references/transfer_syntaxes.md +0 -352
  1052. package/bin/skills/pydicom/scripts/anonymize_dicom.py +0 -137
  1053. package/bin/skills/pydicom/scripts/dicom_to_image.py +0 -172
  1054. package/bin/skills/pydicom/scripts/extract_metadata.py +0 -173
  1055. package/bin/skills/pyhealth/SKILL.md +0 -491
  1056. package/bin/skills/pyhealth/references/datasets.md +0 -178
  1057. package/bin/skills/pyhealth/references/medical_coding.md +0 -284
  1058. package/bin/skills/pyhealth/references/models.md +0 -594
  1059. package/bin/skills/pyhealth/references/preprocessing.md +0 -638
  1060. package/bin/skills/pyhealth/references/tasks.md +0 -379
  1061. package/bin/skills/pyhealth/references/training_evaluation.md +0 -648
  1062. package/bin/skills/pylabrobot/SKILL.md +0 -185
  1063. package/bin/skills/pylabrobot/references/analytical-equipment.md +0 -464
  1064. package/bin/skills/pylabrobot/references/hardware-backends.md +0 -480
  1065. package/bin/skills/pylabrobot/references/liquid-handling.md +0 -403
  1066. package/bin/skills/pylabrobot/references/material-handling.md +0 -620
  1067. package/bin/skills/pylabrobot/references/resources.md +0 -489
  1068. package/bin/skills/pylabrobot/references/visualization.md +0 -532
  1069. package/bin/skills/pymatgen/SKILL.md +0 -691
  1070. package/bin/skills/pymatgen/references/analysis_modules.md +0 -530
  1071. package/bin/skills/pymatgen/references/core_classes.md +0 -318
  1072. package/bin/skills/pymatgen/references/io_formats.md +0 -469
  1073. package/bin/skills/pymatgen/references/materials_project_api.md +0 -517
  1074. package/bin/skills/pymatgen/references/transformations_workflows.md +0 -591
  1075. package/bin/skills/pymatgen/scripts/phase_diagram_generator.py +0 -233
  1076. package/bin/skills/pymatgen/scripts/structure_analyzer.py +0 -266
  1077. package/bin/skills/pymatgen/scripts/structure_converter.py +0 -169
  1078. package/bin/skills/pymc/SKILL.md +0 -572
  1079. package/bin/skills/pymc/assets/hierarchical_model_template.py +0 -333
  1080. package/bin/skills/pymc/assets/linear_regression_template.py +0 -241
  1081. package/bin/skills/pymc/references/distributions.md +0 -320
  1082. package/bin/skills/pymc/references/sampling_inference.md +0 -424
  1083. package/bin/skills/pymc/references/workflows.md +0 -526
  1084. package/bin/skills/pymc/scripts/model_comparison.py +0 -387
  1085. package/bin/skills/pymc/scripts/model_diagnostics.py +0 -350
  1086. package/bin/skills/pymoo/SKILL.md +0 -571
  1087. package/bin/skills/pymoo/references/algorithms.md +0 -180
  1088. package/bin/skills/pymoo/references/constraints_mcdm.md +0 -417
  1089. package/bin/skills/pymoo/references/operators.md +0 -345
  1090. package/bin/skills/pymoo/references/problems.md +0 -265
  1091. package/bin/skills/pymoo/references/visualization.md +0 -353
  1092. package/bin/skills/pymoo/scripts/custom_problem_example.py +0 -181
  1093. package/bin/skills/pymoo/scripts/decision_making_example.py +0 -161
  1094. package/bin/skills/pymoo/scripts/many_objective_example.py +0 -72
  1095. package/bin/skills/pymoo/scripts/multi_objective_example.py +0 -63
  1096. package/bin/skills/pymoo/scripts/single_objective_example.py +0 -59
  1097. package/bin/skills/pyopenms/SKILL.md +0 -217
  1098. package/bin/skills/pyopenms/references/data_structures.md +0 -497
  1099. package/bin/skills/pyopenms/references/feature_detection.md +0 -410
  1100. package/bin/skills/pyopenms/references/file_io.md +0 -349
  1101. package/bin/skills/pyopenms/references/identification.md +0 -422
  1102. package/bin/skills/pyopenms/references/metabolomics.md +0 -482
  1103. package/bin/skills/pyopenms/references/signal_processing.md +0 -433
  1104. package/bin/skills/pysam/SKILL.md +0 -265
  1105. package/bin/skills/pysam/references/alignment_files.md +0 -280
  1106. package/bin/skills/pysam/references/common_workflows.md +0 -520
  1107. package/bin/skills/pysam/references/sequence_files.md +0 -407
  1108. package/bin/skills/pysam/references/variant_files.md +0 -365
  1109. package/bin/skills/pytdc/SKILL.md +0 -460
  1110. package/bin/skills/pytdc/references/datasets.md +0 -246
  1111. package/bin/skills/pytdc/references/oracles.md +0 -400
  1112. package/bin/skills/pytdc/references/utilities.md +0 -684
  1113. package/bin/skills/pytdc/scripts/benchmark_evaluation.py +0 -327
  1114. package/bin/skills/pytdc/scripts/load_and_split_data.py +0 -214
  1115. package/bin/skills/pytdc/scripts/molecular_generation.py +0 -404
  1116. package/bin/skills/pytorch-fsdp/SKILL.md +0 -126
  1117. package/bin/skills/pytorch-fsdp/references/index.md +0 -7
  1118. package/bin/skills/pytorch-fsdp/references/other.md +0 -4249
  1119. package/bin/skills/pytorch-lightning/SKILL.md +0 -346
  1120. package/bin/skills/pytorch-lightning/references/callbacks.md +0 -436
  1121. package/bin/skills/pytorch-lightning/references/distributed.md +0 -490
  1122. package/bin/skills/pytorch-lightning/references/hyperparameter-tuning.md +0 -556
  1123. package/bin/skills/pyvene/SKILL.md +0 -473
  1124. package/bin/skills/pyvene/references/README.md +0 -73
  1125. package/bin/skills/pyvene/references/api.md +0 -383
  1126. package/bin/skills/pyvene/references/tutorials.md +0 -376
  1127. package/bin/skills/qdrant/SKILL.md +0 -493
  1128. package/bin/skills/qdrant/references/advanced-usage.md +0 -648
  1129. package/bin/skills/qdrant/references/troubleshooting.md +0 -631
  1130. package/bin/skills/qiskit/SKILL.md +0 -275
  1131. package/bin/skills/qiskit/references/algorithms.md +0 -607
  1132. package/bin/skills/qiskit/references/backends.md +0 -433
  1133. package/bin/skills/qiskit/references/circuits.md +0 -197
  1134. package/bin/skills/qiskit/references/patterns.md +0 -533
  1135. package/bin/skills/qiskit/references/primitives.md +0 -277
  1136. package/bin/skills/qiskit/references/setup.md +0 -99
  1137. package/bin/skills/qiskit/references/transpilation.md +0 -286
  1138. package/bin/skills/qiskit/references/visualization.md +0 -415
  1139. package/bin/skills/qutip/SKILL.md +0 -318
  1140. package/bin/skills/qutip/references/advanced.md +0 -555
  1141. package/bin/skills/qutip/references/analysis.md +0 -523
  1142. package/bin/skills/qutip/references/core_concepts.md +0 -293
  1143. package/bin/skills/qutip/references/time_evolution.md +0 -348
  1144. package/bin/skills/qutip/references/visualization.md +0 -431
  1145. package/bin/skills/ray-data/SKILL.md +0 -326
  1146. package/bin/skills/ray-data/references/integration.md +0 -82
  1147. package/bin/skills/ray-data/references/transformations.md +0 -83
  1148. package/bin/skills/ray-train/SKILL.md +0 -406
  1149. package/bin/skills/ray-train/references/multi-node.md +0 -628
  1150. package/bin/skills/rdkit/SKILL.md +0 -780
  1151. package/bin/skills/rdkit/references/api_reference.md +0 -432
  1152. package/bin/skills/rdkit/references/descriptors_reference.md +0 -595
  1153. package/bin/skills/rdkit/references/smarts_patterns.md +0 -668
  1154. package/bin/skills/rdkit/scripts/molecular_properties.py +0 -243
  1155. package/bin/skills/rdkit/scripts/similarity_search.py +0 -297
  1156. package/bin/skills/rdkit/scripts/substructure_filter.py +0 -386
  1157. package/bin/skills/reactome-database/SKILL.md +0 -278
  1158. package/bin/skills/reactome-database/references/api_reference.md +0 -465
  1159. package/bin/skills/reactome-database/scripts/reactome_query.py +0 -286
  1160. package/bin/skills/research-grants/README.md +0 -285
  1161. package/bin/skills/research-grants/SKILL.md +0 -938
  1162. package/bin/skills/research-grants/assets/budget_justification_template.md +0 -453
  1163. package/bin/skills/research-grants/assets/nih_specific_aims_template.md +0 -166
  1164. package/bin/skills/research-grants/assets/nsf_project_summary_template.md +0 -92
  1165. package/bin/skills/research-grants/references/broader_impacts.md +0 -392
  1166. package/bin/skills/research-grants/references/darpa_guidelines.md +0 -636
  1167. package/bin/skills/research-grants/references/doe_guidelines.md +0 -586
  1168. package/bin/skills/research-grants/references/nih_guidelines.md +0 -851
  1169. package/bin/skills/research-grants/references/nsf_guidelines.md +0 -570
  1170. package/bin/skills/research-grants/references/specific_aims_guide.md +0 -458
  1171. package/bin/skills/research-lookup/README.md +0 -156
  1172. package/bin/skills/research-lookup/SKILL.md +0 -606
  1173. package/bin/skills/research-lookup/examples.py +0 -174
  1174. package/bin/skills/research-lookup/lookup.py +0 -187
  1175. package/bin/skills/research-lookup/research_lookup.py +0 -483
  1176. package/bin/skills/research-lookup/scripts/research_lookup.py +0 -483
  1177. package/bin/skills/rowan/SKILL.md +0 -427
  1178. package/bin/skills/rowan/references/api_reference.md +0 -413
  1179. package/bin/skills/rowan/references/molecule_handling.md +0 -429
  1180. package/bin/skills/rowan/references/proteins_and_organization.md +0 -499
  1181. package/bin/skills/rowan/references/rdkit_native.md +0 -438
  1182. package/bin/skills/rowan/references/results_interpretation.md +0 -481
  1183. package/bin/skills/rowan/references/workflow_types.md +0 -591
  1184. package/bin/skills/rwkv/SKILL.md +0 -260
  1185. package/bin/skills/rwkv/references/architecture-details.md +0 -344
  1186. package/bin/skills/rwkv/references/rwkv7.md +0 -386
  1187. package/bin/skills/rwkv/references/state-management.md +0 -369
  1188. package/bin/skills/saelens/SKILL.md +0 -386
  1189. package/bin/skills/saelens/references/README.md +0 -70
  1190. package/bin/skills/saelens/references/api.md +0 -333
  1191. package/bin/skills/saelens/references/tutorials.md +0 -318
  1192. package/bin/skills/scanpy/SKILL.md +0 -386
  1193. package/bin/skills/scanpy/assets/analysis_template.py +0 -295
  1194. package/bin/skills/scanpy/references/api_reference.md +0 -251
  1195. package/bin/skills/scanpy/references/plotting_guide.md +0 -352
  1196. package/bin/skills/scanpy/references/standard_workflow.md +0 -206
  1197. package/bin/skills/scanpy/scripts/qc_analysis.py +0 -200
  1198. package/bin/skills/scholar-evaluation/SKILL.md +0 -289
  1199. package/bin/skills/scholar-evaluation/references/evaluation_framework.md +0 -663
  1200. package/bin/skills/scholar-evaluation/scripts/calculate_scores.py +0 -366
  1201. package/bin/skills/scientific-brainstorming/SKILL.md +0 -191
  1202. package/bin/skills/scientific-brainstorming/references/brainstorming_methods.md +0 -326
  1203. package/bin/skills/scientific-critical-thinking/SKILL.md +0 -566
  1204. package/bin/skills/scientific-critical-thinking/references/common_biases.md +0 -364
  1205. package/bin/skills/scientific-critical-thinking/references/evidence_hierarchy.md +0 -484
  1206. package/bin/skills/scientific-critical-thinking/references/experimental_design.md +0 -496
  1207. package/bin/skills/scientific-critical-thinking/references/logical_fallacies.md +0 -478
  1208. package/bin/skills/scientific-critical-thinking/references/scientific_method.md +0 -169
  1209. package/bin/skills/scientific-critical-thinking/references/statistical_pitfalls.md +0 -506
  1210. package/bin/skills/scientific-schematics/QUICK_REFERENCE.md +0 -207
  1211. package/bin/skills/scientific-schematics/README.md +0 -327
  1212. package/bin/skills/scientific-schematics/SKILL.md +0 -615
  1213. package/bin/skills/scientific-schematics/example_usage.sh +0 -89
  1214. package/bin/skills/scientific-schematics/references/best_practices.md +0 -559
  1215. package/bin/skills/scientific-schematics/scripts/generate_schematic.py +0 -135
  1216. package/bin/skills/scientific-schematics/scripts/generate_schematic_ai.py +0 -837
  1217. package/bin/skills/scientific-schematics/test_ai_generation.py +0 -243
  1218. package/bin/skills/scientific-slides/SKILL.md +0 -942
  1219. package/bin/skills/scientific-slides/assets/timing_guidelines.md +0 -597
  1220. package/bin/skills/scientific-slides/references/data_visualization_slides.md +0 -708
  1221. package/bin/skills/scientific-slides/references/presentation_structure.md +0 -642
  1222. package/bin/skills/scientific-slides/references/slide_design_principles.md +0 -849
  1223. package/bin/skills/scientific-slides/references/talk_types_guide.md +0 -687
  1224. package/bin/skills/scientific-slides/references/visual_review_workflow.md +0 -775
  1225. package/bin/skills/scientific-slides/scripts/generate_slide_image.py +0 -143
  1226. package/bin/skills/scientific-slides/scripts/generate_slide_image_ai.py +0 -748
  1227. package/bin/skills/scientific-slides/scripts/pdf_to_images.py +0 -201
  1228. package/bin/skills/scientific-slides/scripts/slides_to_pdf.py +0 -220
  1229. package/bin/skills/scientific-slides/scripts/validate_presentation.py +0 -367
  1230. package/bin/skills/scientific-visualization/SKILL.md +0 -779
  1231. package/bin/skills/scientific-visualization/assets/color_palettes.py +0 -197
  1232. package/bin/skills/scientific-visualization/assets/nature.mplstyle +0 -63
  1233. package/bin/skills/scientific-visualization/assets/presentation.mplstyle +0 -61
  1234. package/bin/skills/scientific-visualization/assets/publication.mplstyle +0 -68
  1235. package/bin/skills/scientific-visualization/references/color_palettes.md +0 -348
  1236. package/bin/skills/scientific-visualization/references/journal_requirements.md +0 -320
  1237. package/bin/skills/scientific-visualization/references/matplotlib_examples.md +0 -620
  1238. package/bin/skills/scientific-visualization/references/publication_guidelines.md +0 -205
  1239. package/bin/skills/scientific-visualization/scripts/figure_export.py +0 -343
  1240. package/bin/skills/scientific-visualization/scripts/style_presets.py +0 -416
  1241. package/bin/skills/scientific-writing/SKILL.md +0 -714
  1242. package/bin/skills/scientific-writing/assets/REPORT_FORMATTING_GUIDE.md +0 -574
  1243. package/bin/skills/scientific-writing/assets/scientific_report.sty +0 -606
  1244. package/bin/skills/scientific-writing/assets/scientific_report_template.tex +0 -449
  1245. package/bin/skills/scientific-writing/references/citation_styles.md +0 -720
  1246. package/bin/skills/scientific-writing/references/figures_tables.md +0 -806
  1247. package/bin/skills/scientific-writing/references/imrad_structure.md +0 -686
  1248. package/bin/skills/scientific-writing/references/professional_report_formatting.md +0 -664
  1249. package/bin/skills/scientific-writing/references/reporting_guidelines.md +0 -748
  1250. package/bin/skills/scientific-writing/references/writing_principles.md +0 -824
  1251. package/bin/skills/scikit-bio/SKILL.md +0 -437
  1252. package/bin/skills/scikit-bio/references/api_reference.md +0 -749
  1253. package/bin/skills/scikit-learn/SKILL.md +0 -521
  1254. package/bin/skills/scikit-learn/references/model_evaluation.md +0 -592
  1255. package/bin/skills/scikit-learn/references/pipelines_and_composition.md +0 -612
  1256. package/bin/skills/scikit-learn/references/preprocessing.md +0 -606
  1257. package/bin/skills/scikit-learn/references/quick_reference.md +0 -433
  1258. package/bin/skills/scikit-learn/references/supervised_learning.md +0 -378
  1259. package/bin/skills/scikit-learn/references/unsupervised_learning.md +0 -505
  1260. package/bin/skills/scikit-learn/scripts/classification_pipeline.py +0 -257
  1261. package/bin/skills/scikit-learn/scripts/clustering_analysis.py +0 -386
  1262. package/bin/skills/scikit-survival/SKILL.md +0 -399
  1263. package/bin/skills/scikit-survival/references/competing-risks.md +0 -397
  1264. package/bin/skills/scikit-survival/references/cox-models.md +0 -182
  1265. package/bin/skills/scikit-survival/references/data-handling.md +0 -494
  1266. package/bin/skills/scikit-survival/references/ensemble-models.md +0 -327
  1267. package/bin/skills/scikit-survival/references/evaluation-metrics.md +0 -378
  1268. package/bin/skills/scikit-survival/references/svm-models.md +0 -411
  1269. package/bin/skills/scvi-tools/SKILL.md +0 -190
  1270. package/bin/skills/scvi-tools/references/differential-expression.md +0 -581
  1271. package/bin/skills/scvi-tools/references/models-atac-seq.md +0 -321
  1272. package/bin/skills/scvi-tools/references/models-multimodal.md +0 -367
  1273. package/bin/skills/scvi-tools/references/models-scrna-seq.md +0 -330
  1274. package/bin/skills/scvi-tools/references/models-spatial.md +0 -438
  1275. package/bin/skills/scvi-tools/references/models-specialized.md +0 -408
  1276. package/bin/skills/scvi-tools/references/theoretical-foundations.md +0 -438
  1277. package/bin/skills/scvi-tools/references/workflows.md +0 -546
  1278. package/bin/skills/seaborn/SKILL.md +0 -673
  1279. package/bin/skills/seaborn/references/examples.md +0 -822
  1280. package/bin/skills/seaborn/references/function_reference.md +0 -770
  1281. package/bin/skills/seaborn/references/objects_interface.md +0 -964
  1282. package/bin/skills/segment-anything/SKILL.md +0 -500
  1283. package/bin/skills/segment-anything/references/advanced-usage.md +0 -589
  1284. package/bin/skills/segment-anything/references/troubleshooting.md +0 -484
  1285. package/bin/skills/sentence-transformers/SKILL.md +0 -255
  1286. package/bin/skills/sentence-transformers/references/models.md +0 -123
  1287. package/bin/skills/sentencepiece/SKILL.md +0 -235
  1288. package/bin/skills/sentencepiece/references/algorithms.md +0 -200
  1289. package/bin/skills/sentencepiece/references/training.md +0 -304
  1290. package/bin/skills/sglang/SKILL.md +0 -442
  1291. package/bin/skills/sglang/references/deployment.md +0 -490
  1292. package/bin/skills/sglang/references/radix-attention.md +0 -413
  1293. package/bin/skills/sglang/references/structured-generation.md +0 -541
  1294. package/bin/skills/shap/SKILL.md +0 -566
  1295. package/bin/skills/shap/references/explainers.md +0 -339
  1296. package/bin/skills/shap/references/plots.md +0 -507
  1297. package/bin/skills/shap/references/theory.md +0 -449
  1298. package/bin/skills/shap/references/workflows.md +0 -605
  1299. package/bin/skills/simpo/SKILL.md +0 -219
  1300. package/bin/skills/simpo/references/datasets.md +0 -478
  1301. package/bin/skills/simpo/references/hyperparameters.md +0 -452
  1302. package/bin/skills/simpo/references/loss-functions.md +0 -350
  1303. package/bin/skills/simpy/SKILL.md +0 -429
  1304. package/bin/skills/simpy/references/events.md +0 -374
  1305. package/bin/skills/simpy/references/monitoring.md +0 -475
  1306. package/bin/skills/simpy/references/process-interaction.md +0 -424
  1307. package/bin/skills/simpy/references/real-time.md +0 -395
  1308. package/bin/skills/simpy/references/resources.md +0 -275
  1309. package/bin/skills/simpy/scripts/basic_simulation_template.py +0 -193
  1310. package/bin/skills/simpy/scripts/resource_monitor.py +0 -345
  1311. package/bin/skills/skypilot/SKILL.md +0 -509
  1312. package/bin/skills/skypilot/references/advanced-usage.md +0 -491
  1313. package/bin/skills/skypilot/references/troubleshooting.md +0 -570
  1314. package/bin/skills/slime/SKILL.md +0 -464
  1315. package/bin/skills/slime/references/api-reference.md +0 -392
  1316. package/bin/skills/slime/references/troubleshooting.md +0 -386
  1317. package/bin/skills/speculative-decoding/SKILL.md +0 -467
  1318. package/bin/skills/speculative-decoding/references/lookahead.md +0 -309
  1319. package/bin/skills/speculative-decoding/references/medusa.md +0 -350
  1320. package/bin/skills/stable-baselines3/SKILL.md +0 -299
  1321. package/bin/skills/stable-baselines3/references/algorithms.md +0 -333
  1322. package/bin/skills/stable-baselines3/references/callbacks.md +0 -556
  1323. package/bin/skills/stable-baselines3/references/custom_environments.md +0 -526
  1324. package/bin/skills/stable-baselines3/references/vectorized_envs.md +0 -568
  1325. package/bin/skills/stable-baselines3/scripts/custom_env_template.py +0 -314
  1326. package/bin/skills/stable-baselines3/scripts/evaluate_agent.py +0 -245
  1327. package/bin/skills/stable-baselines3/scripts/train_rl_agent.py +0 -165
  1328. package/bin/skills/stable-diffusion/SKILL.md +0 -519
  1329. package/bin/skills/stable-diffusion/references/advanced-usage.md +0 -716
  1330. package/bin/skills/stable-diffusion/references/troubleshooting.md +0 -555
  1331. package/bin/skills/statistical-analysis/SKILL.md +0 -632
  1332. package/bin/skills/statistical-analysis/references/assumptions_and_diagnostics.md +0 -369
  1333. package/bin/skills/statistical-analysis/references/bayesian_statistics.md +0 -661
  1334. package/bin/skills/statistical-analysis/references/effect_sizes_and_power.md +0 -581
  1335. package/bin/skills/statistical-analysis/references/reporting_standards.md +0 -469
  1336. package/bin/skills/statistical-analysis/references/test_selection_guide.md +0 -129
  1337. package/bin/skills/statistical-analysis/scripts/assumption_checks.py +0 -539
  1338. package/bin/skills/statsmodels/SKILL.md +0 -614
  1339. package/bin/skills/statsmodels/references/discrete_choice.md +0 -669
  1340. package/bin/skills/statsmodels/references/glm.md +0 -619
  1341. package/bin/skills/statsmodels/references/linear_models.md +0 -447
  1342. package/bin/skills/statsmodels/references/stats_diagnostics.md +0 -859
  1343. package/bin/skills/statsmodels/references/time_series.md +0 -716
  1344. package/bin/skills/string-database/SKILL.md +0 -534
  1345. package/bin/skills/string-database/references/string_reference.md +0 -455
  1346. package/bin/skills/string-database/scripts/string_api.py +0 -369
  1347. package/bin/skills/sympy/SKILL.md +0 -500
  1348. package/bin/skills/sympy/references/advanced-topics.md +0 -635
  1349. package/bin/skills/sympy/references/code-generation-printing.md +0 -599
  1350. package/bin/skills/sympy/references/core-capabilities.md +0 -348
  1351. package/bin/skills/sympy/references/matrices-linear-algebra.md +0 -526
  1352. package/bin/skills/sympy/references/physics-mechanics.md +0 -592
  1353. package/bin/skills/tensorboard/SKILL.md +0 -629
  1354. package/bin/skills/tensorboard/references/integrations.md +0 -638
  1355. package/bin/skills/tensorboard/references/profiling.md +0 -545
  1356. package/bin/skills/tensorboard/references/visualization.md +0 -620
  1357. package/bin/skills/tensorpool/SKILL.md +0 -519
  1358. package/bin/skills/tensorrt-llm/SKILL.md +0 -187
  1359. package/bin/skills/tensorrt-llm/references/multi-gpu.md +0 -298
  1360. package/bin/skills/tensorrt-llm/references/optimization.md +0 -242
  1361. package/bin/skills/tensorrt-llm/references/serving.md +0 -470
  1362. package/bin/skills/tinker/SKILL.md +0 -466
  1363. package/bin/skills/tinker/references/api-reference.md +0 -168
  1364. package/bin/skills/tinker/references/dpo-and-preference.md +0 -174
  1365. package/bin/skills/tinker/references/evaluations.md +0 -183
  1366. package/bin/skills/tinker/references/getting-started.md +0 -157
  1367. package/bin/skills/tinker/references/loss-functions.md +0 -163
  1368. package/bin/skills/tinker/references/models-and-lora.md +0 -148
  1369. package/bin/skills/tinker/references/recipes.md +0 -326
  1370. package/bin/skills/tinker/references/reinforcement-learning.md +0 -357
  1371. package/bin/skills/tinker/references/rendering.md +0 -255
  1372. package/bin/skills/tinker/references/supervised-learning.md +0 -256
  1373. package/bin/skills/tinker-training-cost/SKILL.md +0 -187
  1374. package/bin/skills/tinker-training-cost/scripts/calculate_cost.py +0 -123
  1375. package/bin/skills/together-ai/SKILL.md +0 -722
  1376. package/bin/skills/torch_geometric/SKILL.md +0 -676
  1377. package/bin/skills/torch_geometric/references/datasets_reference.md +0 -574
  1378. package/bin/skills/torch_geometric/references/layers_reference.md +0 -485
  1379. package/bin/skills/torch_geometric/references/transforms_reference.md +0 -679
  1380. package/bin/skills/torch_geometric/scripts/benchmark_model.py +0 -309
  1381. package/bin/skills/torch_geometric/scripts/create_gnn_template.py +0 -529
  1382. package/bin/skills/torch_geometric/scripts/visualize_graph.py +0 -313
  1383. package/bin/skills/torchdrug/SKILL.md +0 -450
  1384. package/bin/skills/torchdrug/references/core_concepts.md +0 -565
  1385. package/bin/skills/torchdrug/references/datasets.md +0 -380
  1386. package/bin/skills/torchdrug/references/knowledge_graphs.md +0 -320
  1387. package/bin/skills/torchdrug/references/models_architectures.md +0 -541
  1388. package/bin/skills/torchdrug/references/molecular_generation.md +0 -352
  1389. package/bin/skills/torchdrug/references/molecular_property_prediction.md +0 -169
  1390. package/bin/skills/torchdrug/references/protein_modeling.md +0 -272
  1391. package/bin/skills/torchdrug/references/retrosynthesis.md +0 -436
  1392. package/bin/skills/torchforge/SKILL.md +0 -433
  1393. package/bin/skills/torchforge/references/api-reference.md +0 -327
  1394. package/bin/skills/torchforge/references/troubleshooting.md +0 -409
  1395. package/bin/skills/torchtitan/SKILL.md +0 -358
  1396. package/bin/skills/torchtitan/references/checkpoint.md +0 -181
  1397. package/bin/skills/torchtitan/references/custom-models.md +0 -258
  1398. package/bin/skills/torchtitan/references/float8.md +0 -133
  1399. package/bin/skills/torchtitan/references/fsdp.md +0 -126
  1400. package/bin/skills/training-data-pipeline/SKILL.md +0 -427
  1401. package/bin/skills/training-data-pipeline/references/data-quality.md +0 -136
  1402. package/bin/skills/training-data-pipeline/references/frontier-distillation.md +0 -129
  1403. package/bin/skills/training-data-pipeline/references/production-data-formatting.md +0 -126
  1404. package/bin/skills/transformer-lens/SKILL.md +0 -346
  1405. package/bin/skills/transformer-lens/references/README.md +0 -54
  1406. package/bin/skills/transformer-lens/references/api.md +0 -362
  1407. package/bin/skills/transformer-lens/references/tutorials.md +0 -339
  1408. package/bin/skills/transformers/SKILL.md +0 -164
  1409. package/bin/skills/transformers/references/generation.md +0 -467
  1410. package/bin/skills/transformers/references/models.md +0 -361
  1411. package/bin/skills/transformers/references/pipelines.md +0 -335
  1412. package/bin/skills/transformers/references/tokenizers.md +0 -447
  1413. package/bin/skills/transformers/references/training.md +0 -500
  1414. package/bin/skills/treatment-plans/README.md +0 -488
  1415. package/bin/skills/treatment-plans/SKILL.md +0 -1579
  1416. package/bin/skills/treatment-plans/assets/STYLING_QUICK_REFERENCE.md +0 -185
  1417. package/bin/skills/treatment-plans/assets/chronic_disease_management_plan.tex +0 -665
  1418. package/bin/skills/treatment-plans/assets/general_medical_treatment_plan.tex +0 -547
  1419. package/bin/skills/treatment-plans/assets/medical_treatment_plan.sty +0 -222
  1420. package/bin/skills/treatment-plans/assets/mental_health_treatment_plan.tex +0 -774
  1421. package/bin/skills/treatment-plans/assets/one_page_treatment_plan.tex +0 -193
  1422. package/bin/skills/treatment-plans/assets/pain_management_plan.tex +0 -799
  1423. package/bin/skills/treatment-plans/assets/perioperative_care_plan.tex +0 -753
  1424. package/bin/skills/treatment-plans/assets/quality_checklist.md +0 -471
  1425. package/bin/skills/treatment-plans/assets/rehabilitation_treatment_plan.tex +0 -756
  1426. package/bin/skills/treatment-plans/references/goal_setting_frameworks.md +0 -411
  1427. package/bin/skills/treatment-plans/references/intervention_guidelines.md +0 -507
  1428. package/bin/skills/treatment-plans/references/regulatory_compliance.md +0 -476
  1429. package/bin/skills/treatment-plans/references/specialty_specific_guidelines.md +0 -655
  1430. package/bin/skills/treatment-plans/references/treatment_plan_standards.md +0 -485
  1431. package/bin/skills/treatment-plans/scripts/check_completeness.py +0 -322
  1432. package/bin/skills/treatment-plans/scripts/generate_template.py +0 -233
  1433. package/bin/skills/treatment-plans/scripts/timeline_generator.py +0 -385
  1434. package/bin/skills/treatment-plans/scripts/validate_treatment_plan.py +0 -369
  1435. package/bin/skills/trl-fine-tuning/SKILL.md +0 -455
  1436. package/bin/skills/trl-fine-tuning/references/dpo-variants.md +0 -227
  1437. package/bin/skills/trl-fine-tuning/references/online-rl.md +0 -82
  1438. package/bin/skills/trl-fine-tuning/references/reward-modeling.md +0 -122
  1439. package/bin/skills/trl-fine-tuning/references/sft-training.md +0 -168
  1440. package/bin/skills/umap-learn/SKILL.md +0 -479
  1441. package/bin/skills/umap-learn/references/api_reference.md +0 -532
  1442. package/bin/skills/uniprot-database/SKILL.md +0 -195
  1443. package/bin/skills/uniprot-database/references/api_examples.md +0 -413
  1444. package/bin/skills/uniprot-database/references/api_fields.md +0 -275
  1445. package/bin/skills/uniprot-database/references/id_mapping_databases.md +0 -285
  1446. package/bin/skills/uniprot-database/references/query_syntax.md +0 -256
  1447. package/bin/skills/uniprot-database/scripts/uniprot_client.py +0 -341
  1448. package/bin/skills/unsloth/SKILL.md +0 -635
  1449. package/bin/skills/unsloth/docs/advanced-rl.md +0 -222
  1450. package/bin/skills/unsloth/docs/chat-templates.md +0 -141
  1451. package/bin/skills/unsloth/docs/datasets.md +0 -489
  1452. package/bin/skills/unsloth/docs/docker-extended.md +0 -99
  1453. package/bin/skills/unsloth/docs/dynamic-ggufs-2.0.md +0 -116
  1454. package/bin/skills/unsloth/docs/dynamic-ggufs-aider.md +0 -118
  1455. package/bin/skills/unsloth/docs/faq.md +0 -91
  1456. package/bin/skills/unsloth/docs/fp16-vs-bf16.md +0 -61
  1457. package/bin/skills/unsloth/docs/fp8-rl.md +0 -224
  1458. package/bin/skills/unsloth/docs/glm-4.7-flash.md +0 -997
  1459. package/bin/skills/unsloth/docs/inference-deployment-overview.md +0 -17
  1460. package/bin/skills/unsloth/docs/inference.md +0 -27
  1461. package/bin/skills/unsloth/docs/installation-docker.md +0 -155
  1462. package/bin/skills/unsloth/docs/installation-pip.md +0 -148
  1463. package/bin/skills/unsloth/docs/kernels-packing.md +0 -190
  1464. package/bin/skills/unsloth/docs/kimi-k2.5.md +0 -634
  1465. package/bin/skills/unsloth/docs/lm-studio.md +0 -235
  1466. package/bin/skills/unsloth/docs/lora-hot-swapping.md +0 -75
  1467. package/bin/skills/unsloth/docs/lora-hyperparameters.md +0 -363
  1468. package/bin/skills/unsloth/docs/memory-efficient-rl.md +0 -267
  1469. package/bin/skills/unsloth/docs/model-selection.md +0 -70
  1470. package/bin/skills/unsloth/docs/models.md +0 -532
  1471. package/bin/skills/unsloth/docs/multi-gpu-ddp.md +0 -90
  1472. package/bin/skills/unsloth/docs/notebooks.md +0 -223
  1473. package/bin/skills/unsloth/docs/overview.md +0 -110
  1474. package/bin/skills/unsloth/docs/qwen3-coder-next-extended.md +0 -900
  1475. package/bin/skills/unsloth/docs/qwen3-coder-next.md +0 -900
  1476. package/bin/skills/unsloth/docs/requirements.md +0 -45
  1477. package/bin/skills/unsloth/docs/reward-hacking.md +0 -25
  1478. package/bin/skills/unsloth/docs/saving-to-gguf.md +0 -138
  1479. package/bin/skills/unsloth/docs/saving-to-ollama.md +0 -46
  1480. package/bin/skills/unsloth/docs/sglang-guide.md +0 -278
  1481. package/bin/skills/unsloth/docs/speculative-decoding.md +0 -70
  1482. package/bin/skills/unsloth/docs/tool-calling.md +0 -334
  1483. package/bin/skills/unsloth/docs/troubleshooting-faq.md +0 -204
  1484. package/bin/skills/unsloth/docs/troubleshooting-inference.md +0 -26
  1485. package/bin/skills/unsloth/docs/tts-fine-tuning.md +0 -149
  1486. package/bin/skills/unsloth/docs/tutorial-grpo.md +0 -273
  1487. package/bin/skills/unsloth/docs/tutorial-llama3-ollama.md +0 -356
  1488. package/bin/skills/unsloth/docs/vision-fine-tuning.md +0 -135
  1489. package/bin/skills/unsloth/docs/vision-rl.md +0 -170
  1490. package/bin/skills/unsloth/docs/vllm-engine-arguments.md +0 -43
  1491. package/bin/skills/unsloth/docs/vllm-guide.md +0 -98
  1492. package/bin/skills/uspto-database/SKILL.md +0 -607
  1493. package/bin/skills/uspto-database/references/additional_apis.md +0 -394
  1494. package/bin/skills/uspto-database/references/patentsearch_api.md +0 -266
  1495. package/bin/skills/uspto-database/references/peds_api.md +0 -212
  1496. package/bin/skills/uspto-database/references/trademark_api.md +0 -358
  1497. package/bin/skills/uspto-database/scripts/patent_search.py +0 -290
  1498. package/bin/skills/uspto-database/scripts/peds_client.py +0 -285
  1499. package/bin/skills/uspto-database/scripts/trademark_client.py +0 -311
  1500. package/bin/skills/vaex/SKILL.md +0 -182
  1501. package/bin/skills/vaex/references/core_dataframes.md +0 -367
  1502. package/bin/skills/vaex/references/data_processing.md +0 -555
  1503. package/bin/skills/vaex/references/io_operations.md +0 -703
  1504. package/bin/skills/vaex/references/machine_learning.md +0 -728
  1505. package/bin/skills/vaex/references/performance.md +0 -571
  1506. package/bin/skills/vaex/references/visualization.md +0 -613
  1507. package/bin/skills/venue-templates/SKILL.md +0 -686
  1508. package/bin/skills/venue-templates/assets/examples/cell_summary_example.md +0 -247
  1509. package/bin/skills/venue-templates/assets/examples/medical_structured_abstract.md +0 -313
  1510. package/bin/skills/venue-templates/assets/examples/nature_abstract_examples.md +0 -213
  1511. package/bin/skills/venue-templates/assets/examples/neurips_introduction_example.md +0 -245
  1512. package/bin/skills/venue-templates/assets/grants/nih_specific_aims.tex +0 -235
  1513. package/bin/skills/venue-templates/assets/grants/nsf_proposal_template.tex +0 -375
  1514. package/bin/skills/venue-templates/assets/journals/nature_article.tex +0 -171
  1515. package/bin/skills/venue-templates/assets/journals/neurips_article.tex +0 -283
  1516. package/bin/skills/venue-templates/assets/journals/plos_one.tex +0 -317
  1517. package/bin/skills/venue-templates/assets/posters/beamerposter_academic.tex +0 -311
  1518. package/bin/skills/venue-templates/references/cell_press_style.md +0 -483
  1519. package/bin/skills/venue-templates/references/conferences_formatting.md +0 -564
  1520. package/bin/skills/venue-templates/references/cs_conference_style.md +0 -463
  1521. package/bin/skills/venue-templates/references/grants_requirements.md +0 -787
  1522. package/bin/skills/venue-templates/references/journals_formatting.md +0 -486
  1523. package/bin/skills/venue-templates/references/medical_journal_styles.md +0 -535
  1524. package/bin/skills/venue-templates/references/ml_conference_style.md +0 -556
  1525. package/bin/skills/venue-templates/references/nature_science_style.md +0 -405
  1526. package/bin/skills/venue-templates/references/posters_guidelines.md +0 -628
  1527. package/bin/skills/venue-templates/references/reviewer_expectations.md +0 -417
  1528. package/bin/skills/venue-templates/references/venue_writing_styles.md +0 -321
  1529. package/bin/skills/venue-templates/scripts/customize_template.py +0 -195
  1530. package/bin/skills/venue-templates/scripts/query_template.py +0 -266
  1531. package/bin/skills/venue-templates/scripts/validate_format.py +0 -250
  1532. package/bin/skills/verl/SKILL.md +0 -391
  1533. package/bin/skills/verl/references/api-reference.md +0 -301
  1534. package/bin/skills/verl/references/troubleshooting.md +0 -391
  1535. package/bin/skills/vllm/SKILL.md +0 -364
  1536. package/bin/skills/vllm/references/optimization.md +0 -226
  1537. package/bin/skills/vllm/references/quantization.md +0 -284
  1538. package/bin/skills/vllm/references/server-deployment.md +0 -255
  1539. package/bin/skills/vllm/references/troubleshooting.md +0 -447
  1540. package/bin/skills/weights-and-biases/SKILL.md +0 -590
  1541. package/bin/skills/weights-and-biases/references/artifacts.md +0 -584
  1542. package/bin/skills/weights-and-biases/references/integrations.md +0 -700
  1543. package/bin/skills/weights-and-biases/references/sweeps.md +0 -847
  1544. package/bin/skills/whisper/SKILL.md +0 -317
  1545. package/bin/skills/whisper/references/languages.md +0 -189
  1546. package/bin/skills/zarr-python/SKILL.md +0 -779
  1547. package/bin/skills/zarr-python/references/api_reference.md +0 -515
  1548. package/bin/skills/zinc-database/SKILL.md +0 -404
  1549. package/bin/skills/zinc-database/references/api_reference.md +0 -692
@@ -1,92 +0,0 @@
1
- # NSF Project Summary Template
2
-
3
- **IMPORTANT**: NSF requires three labeled sections in the project summary (max 1 page):
4
- 1. Overview
5
- 2. Intellectual Merit
6
- 3. Broader Impacts
7
-
8
- ---
9
-
10
- ## Overview
11
-
12
- [Write a paragraph suitable for public dissemination that explains:
13
- - The research question or problem
14
- - The approach or methods
15
- - Expected outcomes
16
- - Significance
17
-
18
- This should be accessible to a broad audience including non-scientists. Avoid jargon.]
19
-
20
- **Example:**
21
- This project investigates how coastal wetlands respond to rising sea levels and increased storm intensity caused by climate change. Using a combination of field observations, remote sensing, and computer modeling across 20 sites along the Atlantic coast, we will determine whether wetlands can migrate inland fast enough to keep pace with sea level rise. Results will inform coastal management policies and help predict the fate of critical ecosystems that protect shorelines and support fisheries. This work will train 5 graduate students and 10 undergraduates, with priority recruitment from underrepresented groups through partnerships with minority-serving institutions.
22
-
23
- ---
24
-
25
- ## Intellectual Merit
26
-
27
- [Address the question: What is the potential for the proposed activity to advance knowledge?
28
-
29
- Include:
30
- - Why the research is important scientifically
31
- - What knowledge gap it addresses
32
- - What will be learned
33
- - Novel aspects of the approach
34
- - How it advances the field]
35
-
36
- **Example:**
37
- This research addresses a critical gap in understanding coastal wetland resilience under accelerating climate change. Current models of wetland migration fail to account for biological constraints on vegetation establishment and feedbacks between sediment dynamics and plant growth. We will develop the first integrated model coupling hydrological, ecological, and geomorphological processes across multiple spatial scales. Our novel approach combines high-resolution LiDAR elevation data with experimental manipulations of sediment and salinity to parameterize vegetation response functions. Expected outcomes include quantitative predictions of wetland migration rates under different sea level rise scenarios, identification of landscape features that facilitate or impede migration, and new theory on ecosystem tipping points. This work will transform our ability to predict and manage coastal ecosystem responses to climate change.
38
-
39
- ---
40
-
41
- ## Broader Impacts
42
-
43
- [Address the question: What is the potential for the proposed activity to benefit society?
44
-
45
- Must address at least one of NSF's five broader impacts areas with specific, measurable activities:
46
- 1. Advance discovery while promoting teaching, training, and learning
47
- 2. Broaden participation of underrepresented groups
48
- 3. Enhance infrastructure for research and education
49
- 4. Broadly disseminate to enhance scientific understanding
50
- 5. Benefit society
51
-
52
- Be SPECIFIC with concrete activities, timelines, and assessment plans.]
53
-
54
- **Example:**
55
- This project will generate significant broader impacts through three integrated activities:
56
-
57
- **1. Education and Training**: We will train 5 PhD students and 10 undergraduates in interdisciplinary coastal science, emphasizing field methods, remote sensing, and quantitative modeling. Undergraduates will participate through summer research internships (10 weeks, $5,000 stipends) with mentorship from graduate students. We will recruit 50% of undergraduates from groups underrepresented in STEM through partnerships with 4 historically Black colleges and universities (HBCUs). Students will present results at the Annual Biogeographical Research Conference and co-author peer-reviewed publications.
58
-
59
- **2. Stakeholder Engagement and Policy Impact**: We will partner with 5 state coastal management agencies and The Nature Conservancy to translate research findings into management tools. Annual workshops will bring together 30 coastal managers, conservation practitioners, and researchers to co-develop decision-support frameworks. Results will inform state sea level rise adaptation plans, wetland restoration prioritization, and land acquisition strategies affecting 500,000 acres of coastal habitat.
60
-
61
- **3. Public Science Communication**: We will create a publicly accessible web-based visualization tool showing projected wetland changes under different climate scenarios for the entire Atlantic coast. The tool will be promoted through social media, state agency websites, and science museums, with expected reach of 50,000 users. We will also develop bilingual (English/Spanish) educational materials for K-12 teachers, piloted in 10 schools serving predominantly underrepresented students.
62
-
63
- Impact will be assessed through pre/post surveys of student participants, tracking of research participants into STEM careers, documentation of policy adoptions by management agencies, and analytics on public engagement platform usage.
64
-
65
- ---
66
-
67
- ## Formatting Requirements
68
-
69
- - **Page Limit**: 1 page maximum
70
- - **Margins**: 1 inch all sides
71
- - **Font**: 11-point or larger (Times Roman, Arial, Palatino, Computer Modern)
72
- - **Section Headers**: Must use exactly these three labels:
73
- - Overview
74
- - Intellectual Merit
75
- - Broader Impacts
76
- - **Public Accessibility**: Overview section suitable for general public
77
-
78
- ## Common Mistakes to Avoid
79
-
80
- ❌ **Don't** omit any of the three required section headings
81
- ❌ **Don't** make broader impacts vague ("will train students")
82
- ❌ **Don't** use jargon in the Overview
83
- ❌ **Don't** exceed 1 page
84
- ❌ **Don't** forget to mention preliminary data or team qualifications
85
- ❌ **Don't** make broader impacts an afterthought (they're equally important)
86
-
87
- ✅ **Do** make all three sections substantive
88
- ✅ **Do** be specific about broader impacts activities
89
- ✅ **Do** write Overview for broad audience
90
- ✅ **Do** convey enthusiasm and significance
91
- ✅ **Do** proofread carefully (this is the first thing reviewers see)
92
-
@@ -1,392 +0,0 @@
1
- # Broader Impacts: Strategies and Best Practices
2
-
3
- ## Overview
4
-
5
- **Broader Impacts** are one of two review criteria for NSF proposals, carrying equal weight with Intellectual Merit. Despite this, broader impacts are often treated as an afterthought—a critical mistake that costs otherwise strong proposals their funding.
6
-
7
- **NSF Definition**: "The potential to benefit society and contribute to the achievement of specific, desired societal outcomes"
8
-
9
- **Key Principle**: Broader impacts must be **specific, measurable, and integrated** with your research plan—not vague aspirations tacked onto the end.
10
-
11
- ## The Five Pillars of Broader Impacts
12
-
13
- NSF evaluates broader impacts across five main areas. **You don't need to address all five**, but you should address at least one substantively with concrete activities, timelines, and assessment plans.
14
-
15
- ### 1. Advance Discovery While Promoting Teaching, Training, and Learning
16
-
17
- **What This Means**: Integrate research and education to inspire the next generation of scientists and enhance scientific literacy.
18
-
19
- **Effective Strategies**:
20
-
21
- **Curriculum Development**:
22
- - Create new courses incorporating research findings
23
- - Develop course modules or laboratory exercises
24
- - Design online learning materials (MOOCs, videos, interactive tools)
25
- - Contribute to textbooks or educational resources
26
-
27
- *Example*: "We will develop a 10-week computational biology module for undergraduate education, incorporating real datasets from this project. The module will include Jupyter notebooks with guided analysis, video tutorials, and assessment tools. Materials will be piloted at our institution (reaching 50 students annually) and made freely available through CourseSource for national adoption."
28
-
29
- **Student Training**:
30
- - Undergraduate research experiences
31
- - Graduate student mentoring
32
- - Postdoctoral training
33
- - High school intern programs
34
- - Research experiences for teachers (RET)
35
-
36
- *Example*: "The project will support 3 PhD students and 6 undergraduate researchers over 5 years. Undergraduates will participate through our existing summer research program (10 weeks, $5,000 stipends) and will present findings at the annual undergraduate research symposium and regional conferences."
37
-
38
- **Pedagogical Innovation**:
39
- - Problem-based learning modules
40
- - Active learning strategies
41
- - Research-intensive courses
42
- - Service learning projects
43
- - Maker spaces or hands-on workshops
44
-
45
- *Example*: "We will transform our introductory physics course (250 students/year) by implementing studio-style physics instruction based on results from this research. The new curriculum will include 3D visualization tools for electromagnetic fields, inquiry-based problem sets, and peer instruction protocols."
46
-
47
- **Professional Development**:
48
- - Workshops for faculty or teachers
49
- - Training programs for early-career researchers
50
- - Mentoring programs
51
- - Career development resources
52
-
53
- *Example*: "We will host annual 3-day workshops for 25 community college faculty, providing training in genome editing techniques. Participants will receive hands-on experience with CRISPR methods developed in this project, complete teaching modules for their courses, and ongoing support through a virtual learning community."
54
-
55
- ### 2. Broaden Participation of Underrepresented Groups
56
-
57
- **What This Means**: Increase participation of groups underrepresented in STEM, including women, racial/ethnic minorities, persons with disabilities, and those from economically disadvantaged backgrounds.
58
-
59
- **Effective Strategies**:
60
-
61
- **Partnerships with Minority-Serving Institutions**:
62
- - Collaborate with HBCUs (Historically Black Colleges and Universities)
63
- - Partner with HSIs (Hispanic-Serving Institutions)
64
- - Work with TCUs (Tribal Colleges and Universities)
65
- - Engage with community colleges
66
-
67
- *Example*: "We will establish formal research partnerships with 4 regional HBCUs (North Carolina A&T, Howard University, Morehouse College, and Spelman College). Each summer, 2 students from partner institutions will participate in 10-week research internships, including stipends ($6,000), housing, travel to field sites, and participation in our weekly research seminar series. A faculty liaison from each partner institution will co-mentor students and facilitate year-round engagement."
68
-
69
- **Recruitment and Retention**:
70
- - Targeted recruitment at conferences (SACNAS, ABRCMS, NSBE, SWE)
71
- - Scholarship programs for underrepresented students
72
- - Bridge programs for community college transfers
73
- - Retention support (mentoring, peer networks, professional development)
74
-
75
- *Example*: "We will recruit 50% of summer undergraduate researchers from groups underrepresented in computer science through partnerships with SACNAS and the National Society of Black Engineers. Participants will receive mentoring from graduate students with similar backgrounds, attend professional development workshops, and join our diversity-in-computing learning community that provides year-round support and networking."
76
-
77
- **Culturally Relevant Engagement**:
78
- - Research addressing community-identified needs
79
- - Community-based participatory research
80
- - Engagement with indigenous communities
81
- - Bilingual materials and outreach
82
-
83
- *Example*: "In partnership with the Navajo Nation, we will conduct participatory research on water quality in reservation communities. Community members will co-design the research questions, participate in data collection, and contribute indigenous knowledge about local hydrology. Results will be shared through community presentations in both English and Navajo, and will inform tribal water management policies."
84
-
85
- **Addressing Systemic Barriers**:
86
- - Flexible schedules for non-traditional students
87
- - Childcare support for participants
88
- - Accessible facilities and materials
89
- - Financial support (stipends, travel, equipment)
90
- - Mentoring networks and affinity groups
91
-
92
- *Example*: "To support participation of students from low-income backgrounds, we will provide laptop computers, software licenses, and internet hotspots to all research participants. We will also offer flexible work schedules, remote participation options, and supplemental funding for students with childcare or eldercare responsibilities."
93
-
94
- ### 3. Enhance Infrastructure for Research and Education
95
-
96
- **What This Means**: Build facilities, tools, databases, or networks that enable future research and education across the broader community.
97
-
98
- **Effective Strategies**:
99
-
100
- **Shared Research Infrastructure**:
101
- - Multi-user instrumentation
102
- - Core facilities
103
- - Field stations or observatories
104
- - Computational resources
105
- - Cyberinfrastructure
106
-
107
- *Example*: "We will establish a regional Cryo-Electron Microscopy facility serving 15 institutions in the Southwest. The facility will provide training and access to state-of-the-art imaging capabilities currently unavailable in the region. We will operate a user program with subsidized rates for academic users and offer annual training workshops for 50 researchers."
108
-
109
- **Data and Software Resources**:
110
- - Open-access databases
111
- - Software tools and platforms
112
- - Analysis pipelines
113
- - Standardized protocols
114
- - Data repositories
115
-
116
- *Example*: "We will develop and maintain EcoDataHub, an open-source platform for ecological time-series analysis. The platform will include automated data cleaning, standardized analysis workflows, interactive visualization tools, and cloud computing integration. Software will be documented, version-controlled on GitHub, and supported through user forums and quarterly webinars. We expect 1,000+ users within 3 years based on community surveys."
117
-
118
- **Biological or Physical Resources**:
119
- - Living stock centers (model organisms, cell lines)
120
- - Specimen collections
121
- - Reagent repositories
122
- - Seed banks or tissue collections
123
-
124
- *Example*: "We will establish a publicly accessible repository of 500 sequenced bacterial strains isolated from extreme environments. Each strain will include full genome sequence, phenotypic characterization, and growth protocols. Materials will be available through the ATCC with metadata deposited in NCBI BioProject."
125
-
126
- **Standards and Protocols**:
127
- - Community standards
128
- - Best practices guides
129
- - Benchmarking datasets
130
- - Quality control metrics
131
- - Interoperability frameworks
132
-
133
- *Example*: "Working with 20 international laboratories, we will develop and validate standardized protocols for single-cell RNA sequencing analysis. The resulting guidelines will address batch effects, quality control, normalization methods, and statistical best practices. Protocols will be published in peer-reviewed literature and deposited in protocols.io."
134
-
135
- ### 4. Broadly Disseminate to Enhance Scientific and Technological Understanding
136
-
137
- **What This Means**: Communicate research to broader audiences including the public, K-12 students, policymakers, and stakeholders to enhance scientific literacy and informed decision-making.
138
-
139
- **Effective Strategies**:
140
-
141
- **K-12 Education Outreach**:
142
- - School visits and science demonstrations
143
- - After-school programs
144
- - Science fairs and competitions
145
- - Teacher professional development
146
- - Classroom resources and lesson plans
147
-
148
- *Example*: "We will partner with 10 local middle schools (serving 75% students from low-income families) to deliver hands-on robotics workshops. Each school will receive robot kits, and we will train teachers to lead a 12-week after-school robotics club. Students will apply concepts from this research (sensor fusion, autonomous navigation) to design robots for real-world challenges. The program will reach 200 students annually."
149
-
150
- **Public Engagement**:
151
- - Museum partnerships and exhibits
152
- - Science cafés and public lectures
153
- - Science festivals
154
- - Citizen science projects
155
- - Community workshops
156
-
157
- *Example*: "We will collaborate with the Museum of Science and Industry to create a permanent interactive exhibit on climate modeling. The exhibit will allow visitors to manipulate climate variables and observe predicted outcomes using simplified versions of our models. We anticipate 500,000 annual visitors. We will also host quarterly 'Climate Science Saturday' public lectures reaching 2,000 community members annually."
158
-
159
- **Media and Communications**:
160
- - Blog posts and articles
161
- - Podcasts or videos
162
- - Social media engagement
163
- - Press releases for major findings
164
- - Popular science writing
165
-
166
- *Example*: "We will produce a 6-episode podcast series exploring the intersection of artificial intelligence and creativity, featuring interviews with artists, musicians, and computer scientists. Episodes will be freely available on major platforms, with transcripts and educational materials on our website. Based on our existing podcast (15,000 downloads/episode), we expect to reach 100,000+ listeners."
167
-
168
- **Policy Engagement**:
169
- - Science policy fellowships
170
- - Congressional briefings
171
- - White papers for decision-makers
172
- - Stakeholder workshops
173
- - Regulatory science contributions
174
-
175
- *Example*: "We will organize annual workshops bringing together researchers, water utilities, environmental regulators, and community advocates to discuss implications of our research for drinking water policy. Findings will be synthesized into policy briefs distributed to state and federal agencies. PI will participate in the AAAS Science and Technology Policy Fellowship to engage directly with EPA rulemaking."
176
-
177
- **Citizen Science**:
178
- - Community-based data collection
179
- - Participatory research design
180
- - Volunteer monitoring programs
181
- - Crowdsourcing platforms
182
-
183
- *Example*: "We will launch a citizen science program enlisting 500 volunteers across the Midwest to monitor pollinator populations using our smartphone app. Participants will receive training materials, identification guides, and regular feedback on their observations. Data will contribute directly to our research while building public understanding of pollinator ecology. Results will be visualized on an interactive public dashboard."
184
-
185
- ### 5. Benefit Society
186
-
187
- **What This Means**: Apply research to address societal needs, improve quality of life, strengthen national security, or enhance economic competitiveness.
188
-
189
- **Effective Strategies**:
190
-
191
- **Health and Well-Being**:
192
- - Clinical applications
193
- - Public health improvements
194
- - Healthcare accessibility
195
- - Mental health resources
196
- - Environmental health
197
-
198
- *Example*: "Our diagnostic tool will reduce costs of malaria diagnosis from $10 to $0.50 per test, enabling deployment in resource-limited settings. We will partner with PATH and Médecins Sans Frontières to conduct field trials in 3 African countries and develop manufacturing partnerships for at-scale production. We project this technology could reach 10 million patients annually within 5 years."
199
-
200
- **Economic Development**:
201
- - Technology commercialization
202
- - Job creation
203
- - Industry partnerships
204
- - Workforce development
205
- - Startup formation
206
-
207
- *Example*: "We will establish an industry partnership program with 5 regional manufacturing companies to transfer our advanced materials synthesis methods. Through quarterly technical workshops and on-site consultations, we will help companies integrate these processes into production lines, potentially creating 50-100 high-skill jobs over 5 years. Two graduate students will complete internships at partner companies."
208
-
209
- **Environmental Sustainability**:
210
- - Climate change mitigation or adaptation
211
- - Conservation and biodiversity
212
- - Pollution reduction
213
- - Sustainable agriculture
214
- - Renewable energy
215
-
216
- *Example*: "Our soil carbon sequestration practices will be implemented on 1,000 acres of working farmland in partnership with 15 Iowa farmers. We will provide training, monitoring support, and carbon credit market access. If successful, practices could sequester 100,000 tons of CO2 equivalent annually if adopted across 10% of Midwest cropland, while increasing farmer income by $50-100/acre through carbon credits."
217
-
218
- **National and Homeland Security**:
219
- - Defense applications
220
- - Cybersecurity
221
- - Critical infrastructure protection
222
- - Emergency response
223
- - Intelligence capabilities
224
-
225
- *Example*: "We will work with the Department of Homeland Security to adapt our threat detection algorithms for transportation security screening. Technology will be piloted at 3 major airports, with the goal of reducing false-positive rates by 40% while maintaining security effectiveness, decreasing passenger wait times and improving screening efficiency."
226
-
227
- **Social and Cultural Benefits**:
228
- - Preservation of cultural heritage
229
- - Accessibility and inclusion
230
- - Social justice
231
- - Arts and humanities
232
- - Quality of life improvements
233
-
234
- *Example*: "Our 3D scanning and virtual reality platform will be used to digitally preserve 20 culturally significant sites threatened by climate change and development. Virtual reconstructions will be made freely available to descendant communities, schools, and the public through a web-based interface and VR experiences. We will partner with indigenous groups to ensure culturally appropriate representation."
235
-
236
- ## Best Practices for Broader Impacts
237
-
238
- ### Be Specific and Concrete
239
-
240
- **Vague** ❌:
241
- "This research will train the next generation of scientists."
242
-
243
- **Specific** ✅:
244
- "This project will support 3 PhD students, 2 postdocs, and 12 undergraduate researchers over 5 years. Undergraduates will be recruited through our partnership with the Louis Stokes Alliance for Minority Participation, with a goal of 50% participation from underrepresented groups. Students will receive training in advanced microscopy, data analysis, and scientific communication, and will present their research at the annual Emerging Researchers National Conference."
245
-
246
- ### Include Timelines and Milestones
247
-
248
- **Vague** ❌:
249
- "We will develop educational materials."
250
-
251
- **Specific** ✅:
252
- "Year 1: Develop draft curriculum modules and pilot with 50 students
253
- Year 2: Revise based on assessment data and expand to 150 students across 3 institutions
254
- Years 3-5: National dissemination through CourseSource, workshops at 2 professional conferences, and online repository. Target: Adoption by 20 institutions reaching 1,000 students annually by Year 5."
255
-
256
- ### Measure and Assess Impact
257
-
258
- **Include**:
259
- - Quantitative metrics (number of participants, downloads, users)
260
- - Qualitative assessment (surveys, interviews, focus groups)
261
- - Learning outcomes or behavioral changes
262
- - Longitudinal tracking
263
- - Comparison to baseline or control groups
264
-
265
- **Example**:
266
- "We will assess program effectiveness through: (1) Pre/post surveys measuring science self-efficacy using validated instruments, (2) Tracking participant persistence in STEM majors through institutional records, (3) Focus groups with participants and teachers, (4) Analysis of student work products. We expect to see a 30% increase in science self-efficacy scores and 90% retention in STEM majors among participants compared to 65% institutional baseline."
267
-
268
- ### Leverage Existing Infrastructure
269
-
270
- **Don't reinvent the wheel**—build on existing programs and partnerships:
271
- - Institutional programs (REU sites, AGEP, LSAMP, etc.)
272
- - Community partnerships already established
273
- - Shared facilities or resources
274
- - Professional societies and organizations
275
-
276
- **Example**:
277
- "We will integrate with our institution's existing NSF REU site in Materials Science, adding 2 additional positions focused on our research area. This leverages established recruitment pipelines with 15 partner institutions, professional development programming, and assessment infrastructure while expanding opportunities for undergraduate researchers."
278
-
279
- ### Demonstrate Institutional Commitment
280
-
281
- **Show that broader impacts will continue beyond grant period**:
282
- - Institutional cost-sharing or support
283
- - Integration into ongoing programs
284
- - Sustainability plan
285
- - Letters of commitment from partners
286
-
287
- **Example**:
288
- "The university has committed $50,000 annually in cost-share to sustain the high school outreach program beyond the grant period. The program will be integrated into our Center for STEM Education, ensuring administrative support, space, and continuity. Our partner school districts have committed teacher time and classroom access (see letters of commitment in supplementary documents)."
289
-
290
- ### Align with Research Plan
291
-
292
- **Integration examples**:
293
- - Students work on research questions from the proposal
294
- - Educational materials use data generated by the research
295
- - Outreach communicates research findings
296
- - Community needs inform research questions
297
-
298
- **Poor Integration** ❌:
299
- Research on quantum computing + Unrelated marine biology outreach for middle schoolers
300
-
301
- **Good Integration** ✅:
302
- Research on quantum computing + Develop quantum computing curriculum modules + Summer program where students program quantum simulators + Public lectures on quantum technologies
303
-
304
- ## Common Broader Impacts Mistakes
305
-
306
- ### Mistake 1: Generic and Vague Statements
307
-
308
- ❌ "This project will train graduate students and postdocs."
309
- ❌ "Results will be broadly disseminated through publications and conferences."
310
- ❌ "We will engage in outreach activities."
311
-
312
- These are baseline expectations, not broader impacts.
313
-
314
- ### Mistake 2: No Plan or Timeline
315
-
316
- ❌ "We hope to develop educational materials that could be used nationally."
317
-
318
- ✅ "Year 1: Develop and pilot 5 teaching modules. Year 2: Assess effectiveness and refine. Year 3: Publish in Journal of Chemical Education. Years 4-5: Disseminate through workshops at 3 national conferences and online repository. Target: Adoption by 30 institutions by Year 5."
319
-
320
- ### Mistake 3: No Assessment
321
-
322
- ❌ "We will run a summer camp for underrepresented students."
323
-
324
- ✅ "We will run a 4-week summer camp for 30 students (60% from underrepresented groups). We will assess impact through pre/post content knowledge tests, science identity surveys, and tracking of STEM course enrollment. We expect 80% of participants to enroll in advanced science courses the following year."
325
-
326
- ### Mistake 4: Unrealistic Scope
327
-
328
- ❌ "We will establish a national network of 100 schools, develop a comprehensive K-12 curriculum, create a museum exhibit, launch a nationwide citizen science program, and commercialize our technology" (with no budget or personnel allocated).
329
-
330
- Be realistic about what you can accomplish with the resources and time available.
331
-
332
- ### Mistake 5: Poor Integration
333
-
334
- ❌ Research on plant genomics + Unrelated robotics outreach
335
-
336
- ✅ Research on plant genomics + Develop plant biology curriculum + Engage community gardens in phenotyping citizen science
337
-
338
- ### Mistake 6: Treating as Afterthought
339
-
340
- ❌ Half-page generic statement at end of proposal with no budget allocation
341
-
342
- ✅ Integrated throughout proposal, dedicated personnel (0.5 month PI time, 10% grad student, summer coordinator), allocated budget ($15K/year), detailed plan, and assessment strategy
343
-
344
- ### Mistake 7: No Track Record
345
-
346
- If proposing extensive broader impacts activities but have no history of such work, reviewers will be skeptical.
347
-
348
- ✅ Show preliminary efforts, leverage existing programs, include collaborators with relevant expertise, cite successful prior broader impacts work
349
-
350
- ## Budgeting for Broader Impacts
351
-
352
- **NSF expects resources allocated to broader impacts activities.**
353
-
354
- **Typical Budget Items**:
355
- - **Personnel**: Program coordinator, graduate students, undergraduate assistants
356
- - **Participant support**: Stipends, travel, housing for students/teachers
357
- - **Materials and supplies**: Educational materials, outreach equipment, workshop supplies
358
- - **Travel**: Conference presentations of broader impacts work, site visits to partners
359
- - **Subawards**: Payments to partnering institutions or organizations
360
- - **Evaluation**: External evaluator for assessment
361
-
362
- **Example Budget**:
363
- - Summer program coordinator (2 months/year): $15,000/year
364
- - Undergraduate stipends (10 students × $5,000): $50,000/year
365
- - Materials and supplies for workshops: $5,000/year
366
- - Travel for recruitment and partner meetings: $3,000/year
367
- - External evaluator: $8,000/year
368
- - **Total: $81,000/year (16% of $500K budget)**
369
-
370
- ## Resources for Broader Impacts
371
-
372
- ### NSF Resources
373
- - **NSF Broader Impacts Website**: https://www.nsf.gov/od/oia/special/broaderimpacts/
374
- - **BI Examples Repository**: https://www.cmu.edu/uro/resources for undergraduate research/best practices/broader-impacts.html
375
- - **Broader Impacts Toolkit**: Many universities provide institutional resources
376
-
377
- ### Assessment Tools
378
- - **STEM-OP (STEM Outreach Program)**: Survey instruments for outreach assessment
379
- - **STELAR Network**: Resources for informal STEM education
380
- - **Evaluation frameworks**: Logic models, theory of change
381
-
382
- ### Partner Organizations
383
- - **SACNAS**: Society for Advancement of Chicanos/Hispanics and Native Americans in Science
384
- - **ABRCMS**: Annual Biomedical Research Conference for Minority Students
385
- - **NSBE, SWE, AISES**: Professional societies for underrepresented groups
386
- - **Science museums and centers**: Partner for public engagement
387
- - **School districts and community organizations**: For K-12 outreach
388
-
389
- ---
390
-
391
- **Key Takeaway**: Effective broader impacts are specific, measurable, assessed, integrated with the research plan, and demonstrate institutional commitment. They should be planned with the same rigor as the research itself, with dedicated resources, timelines, milestones, and evaluation strategies. Generic statements about "training students" or "disseminating results" are insufficient—NSF expects concrete plans that demonstrably benefit society.
392
-